Query 036079
Match_columns 1399
No_of_seqs 835 out of 5817
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 15:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3E-50 1E-54 519.6 31.1 666 539-1397 69-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.2E-46 7.4E-51 483.5 31.6 612 539-1284 92-722 (768)
3 2a5y_B CED-4; apoptosis; HET: 100.0 5.2E-45 1.8E-49 448.0 28.7 317 152-491 131-473 (549)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-36 4.9E-41 389.6 40.2 430 547-1114 25-490 (680)
5 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-35 7.5E-40 378.6 41.3 292 549-1017 6-307 (680)
6 1vt4_I APAF-1 related killer D 100.0 4.8E-37 1.6E-41 374.1 17.4 286 150-482 129-436 (1221)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.9E-35 2E-39 369.4 36.8 142 961-1114 263-409 (606)
8 3t6q_A CD180 antigen; protein- 100.0 6.8E-35 2.3E-39 368.8 37.1 291 939-1277 255-558 (606)
9 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-35 6E-40 408.9 25.2 314 144-489 119-452 (1249)
10 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-34 1.5E-38 361.5 31.6 244 959-1279 307-558 (606)
11 3t6q_A CD180 antigen; protein- 100.0 4.1E-34 1.4E-38 361.8 30.6 104 548-652 34-140 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-32 3.7E-37 359.6 43.0 84 1191-1279 477-560 (844)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-31 5.8E-36 348.3 41.5 517 546-1230 23-559 (844)
14 1z6t_A APAF-1, apoptotic prote 100.0 1.1E-32 3.6E-37 345.9 23.6 307 146-486 121-449 (591)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-31 3.6E-36 335.4 26.8 450 547-1116 26-509 (549)
16 2z63_A TOLL-like receptor 4, v 100.0 1.9E-30 6.6E-35 326.0 34.8 266 961-1279 259-531 (570)
17 2z81_A CD282 antigen, TOLL-lik 100.0 2E-30 6.9E-35 323.8 33.2 404 546-1091 4-441 (549)
18 2z63_A TOLL-like receptor 4, v 100.0 5.2E-30 1.8E-34 322.0 30.1 103 548-651 29-134 (570)
19 4eco_A Uncharacterized protein 100.0 5.9E-31 2E-35 331.0 21.2 412 530-1065 88-597 (636)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-29 3.6E-34 314.5 28.9 449 531-1115 8-479 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 3.8E-30 1.3E-34 326.7 24.9 222 530-815 330-630 (876)
22 2z7x_B TOLL-like receptor 1, v 100.0 4.7E-30 1.6E-34 317.7 24.7 426 529-1095 27-482 (520)
23 4eco_A Uncharacterized protein 100.0 7.1E-29 2.4E-33 312.1 22.7 183 547-791 81-347 (636)
24 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-27 5.4E-32 304.4 32.8 111 539-653 46-160 (635)
25 4ecn_A Leucine-rich repeat pro 100.0 1.4E-28 4.8E-33 312.4 22.1 120 532-653 434-585 (876)
26 1jl5_A Outer protein YOPM; leu 100.0 1.9E-28 6.6E-33 293.5 21.0 412 545-1115 9-427 (454)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-27 6.7E-32 296.4 29.8 437 547-1115 52-508 (562)
28 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-27 6.4E-32 303.7 29.1 125 529-654 58-186 (635)
29 1jl5_A Outer protein YOPM; leu 99.9 1.2E-27 3.9E-32 286.8 19.8 156 935-1114 192-347 (454)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.4E-26 1.2E-30 285.1 24.4 425 529-1067 58-509 (562)
31 1o6v_A Internalin A; bacterial 99.9 1.5E-24 5.2E-29 263.2 26.2 103 546-654 45-147 (466)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-24 4.7E-29 260.4 22.5 101 542-651 37-137 (457)
33 3bz5_A Internalin-J, INLJ; leu 99.9 7E-24 2.4E-28 254.2 25.0 81 563-650 35-115 (457)
34 3v47_A TOLL-like receptor 5B a 99.9 2E-23 6.7E-28 253.7 26.4 372 943-1356 15-412 (455)
35 3v47_A TOLL-like receptor 5B a 99.9 6.1E-23 2.1E-27 249.4 27.0 375 838-1277 15-406 (455)
36 1o6v_A Internalin A; bacterial 99.9 1.3E-22 4.5E-27 246.0 28.6 341 936-1350 44-386 (466)
37 4fmz_A Internalin; leucine ric 99.9 1.6E-22 5.5E-27 235.7 22.1 101 543-649 40-140 (347)
38 3o6n_A APL1; leucine-rich repe 99.9 3.5E-22 1.2E-26 236.7 25.3 299 546-1065 44-349 (390)
39 2id5_A Lingo-1, leucine rich r 99.9 1.6E-22 5.3E-27 247.0 20.6 104 547-651 32-138 (477)
40 4fmz_A Internalin; leucine ric 99.9 9.1E-22 3.1E-26 229.3 22.7 301 935-1303 41-343 (347)
41 3oja_B Anopheles plasmodium-re 99.9 2.6E-21 8.9E-26 242.0 25.6 102 958-1065 253-355 (597)
42 2id5_A Lingo-1, leucine rich r 99.9 2.4E-20 8.2E-25 227.6 28.1 310 942-1278 15-332 (477)
43 3o6n_A APL1; leucine-rich repe 99.9 1.2E-20 4.1E-25 223.4 23.4 280 937-1277 44-329 (390)
44 3oja_B Anopheles plasmodium-re 99.8 2.8E-20 9.7E-25 232.6 24.5 280 937-1277 50-335 (597)
45 4fcg_A Uncharacterized protein 99.8 2.3E-20 7.7E-25 213.9 18.0 229 545-864 79-310 (328)
46 1xku_A Decorin; proteoglycan, 99.8 7E-20 2.4E-24 211.3 20.5 282 548-887 32-330 (330)
47 1ogq_A PGIP-2, polygalacturona 99.8 3.5E-20 1.2E-24 211.1 13.3 102 547-648 50-156 (313)
48 2ft3_A Biglycan; proteoglycan, 99.8 1.6E-19 5.4E-24 208.4 18.5 282 548-887 34-331 (332)
49 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-20 4.4E-25 214.7 7.7 242 530-847 57-305 (313)
50 3ogk_B Coronatine-insensitive 99.8 3.7E-20 1.3E-24 233.3 7.5 86 543-628 69-175 (592)
51 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-18 6.1E-23 212.9 22.2 88 548-648 41-128 (622)
52 4fcg_A Uncharacterized protein 99.8 2.6E-18 9E-23 196.7 20.9 228 959-1275 81-310 (328)
53 1xku_A Decorin; proteoglycan, 99.8 1.8E-17 6.1E-22 191.1 26.1 284 960-1302 32-328 (330)
54 3ogk_B Coronatine-insensitive 99.8 1.1E-20 3.7E-25 238.2 -3.8 91 1262-1355 432-528 (592)
55 2ft3_A Biglycan; proteoglycan, 99.8 2.7E-17 9.2E-22 189.6 24.6 108 1192-1302 215-329 (332)
56 3g06_A SSPH2 (leucine-rich rep 99.8 3.4E-17 1.2E-21 201.5 25.5 258 939-1281 41-299 (622)
57 2z80_A TOLL-like receptor 2, v 99.7 4.2E-18 1.5E-22 198.3 14.9 99 548-648 53-156 (353)
58 1z7x_W Ribonuclease inhibitor; 99.7 2.6E-20 8.9E-25 226.7 -4.2 105 547-651 3-123 (461)
59 3zyi_A Leucine-rich repeat-con 99.7 2E-16 7E-21 190.7 23.0 146 941-1091 57-206 (452)
60 3zyj_A Leucine-rich repeat-con 99.7 2.1E-16 7.1E-21 189.9 23.0 145 941-1091 46-195 (440)
61 1z7x_W Ribonuclease inhibitor; 99.7 7E-20 2.4E-24 222.9 -8.8 121 531-651 11-152 (461)
62 3zyi_A Leucine-rich repeat-con 99.7 1.5E-16 5.1E-21 191.9 19.8 100 547-648 75-178 (452)
63 2z66_A Variable lymphocyte rec 99.7 3E-17 1E-21 187.0 13.0 101 547-649 28-134 (306)
64 3o53_A Protein LRIM1, AGAP0063 99.7 4E-18 1.4E-22 194.7 4.7 264 530-853 17-282 (317)
65 2z66_A Variable lymphocyte rec 99.7 8.5E-17 2.9E-21 183.3 15.7 242 550-887 10-259 (306)
66 3zyj_A Leucine-rich repeat-con 99.7 2.4E-16 8.1E-21 189.4 19.6 176 547-787 64-244 (440)
67 2z80_A TOLL-like receptor 2, v 99.7 1E-16 3.4E-21 186.7 15.5 107 543-650 72-183 (353)
68 3o53_A Protein LRIM1, AGAP0063 99.7 2.1E-17 7.1E-22 188.8 8.6 241 958-1280 33-276 (317)
69 2p1m_B Transport inhibitor res 99.7 3E-19 1E-23 225.2 -7.4 130 959-1091 105-245 (594)
70 2p1m_B Transport inhibitor res 99.7 2.6E-18 9E-23 216.6 -0.5 175 935-1115 102-300 (594)
71 1ozn_A Reticulon 4 receptor; N 99.7 2.2E-16 7.4E-21 177.7 14.0 179 546-786 31-213 (285)
72 1ozn_A Reticulon 4 receptor; N 99.7 6.5E-16 2.2E-20 173.8 16.7 177 549-789 13-192 (285)
73 1wwl_A Monocyte differentiatio 99.7 5.5E-17 1.9E-21 184.8 7.7 203 545-785 93-307 (312)
74 1wwl_A Monocyte differentiatio 99.7 8.4E-18 2.9E-22 191.6 0.8 53 832-887 252-307 (312)
75 1w5s_A Origin recognition comp 99.6 2.8E-15 9.7E-20 179.0 20.1 316 148-478 21-387 (412)
76 3oja_A Leucine-rich immune mol 99.6 6E-16 2.1E-20 187.2 12.9 235 958-1274 33-270 (487)
77 2qen_A Walker-type ATPase; unk 99.6 5.7E-15 2E-19 172.1 20.0 292 146-482 9-348 (350)
78 3rfs_A Internalin B, repeat mo 99.6 2.6E-15 8.9E-20 167.1 15.2 106 543-651 37-143 (272)
79 1p9a_G Platelet glycoprotein I 99.6 3.3E-15 1.1E-19 167.3 15.3 176 543-785 6-183 (290)
80 2o6q_A Variable lymphocyte rec 99.6 6.9E-15 2.4E-19 163.5 16.8 98 548-649 17-117 (270)
81 3oja_A Leucine-rich immune mol 99.6 8.7E-16 3E-20 185.8 10.2 232 831-1113 32-271 (487)
82 2xwt_C Thyrotropin receptor; s 99.6 1.4E-14 4.8E-19 157.9 16.8 138 951-1091 23-166 (239)
83 4ay9_X Follicle-stimulating ho 99.6 2.9E-14 1E-18 165.1 20.3 238 941-1275 12-255 (350)
84 2xwt_C Thyrotropin receptor; s 99.6 4E-15 1.4E-19 162.3 11.4 174 548-786 32-217 (239)
85 1h6u_A Internalin H; cell adhe 99.6 4.7E-15 1.6E-19 168.0 12.3 102 545-652 39-140 (308)
86 2o6q_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 161.7 14.5 175 547-785 37-216 (270)
87 1p9a_G Platelet glycoprotein I 99.6 6.5E-15 2.2E-19 165.0 12.3 181 539-786 25-207 (290)
88 2z62_A TOLL-like receptor 4, v 99.6 7.9E-15 2.7E-19 164.0 13.0 106 547-653 28-136 (276)
89 2z62_A TOLL-like receptor 4, v 99.6 5.4E-15 1.8E-19 165.4 11.5 194 530-787 35-237 (276)
90 2fna_A Conserved hypothetical 99.6 5.7E-14 1.9E-18 164.2 20.3 291 147-481 11-355 (357)
91 4ay9_X Follicle-stimulating ho 99.5 1.2E-13 4.2E-18 159.8 20.5 230 836-1113 12-255 (350)
92 4glp_A Monocyte differentiatio 99.5 5.2E-14 1.8E-18 160.1 13.2 109 545-653 89-209 (310)
93 2ast_B S-phase kinase-associat 99.5 2E-15 6.8E-20 174.8 1.1 235 543-854 64-313 (336)
94 1h6u_A Internalin H; cell adhe 99.5 4.6E-14 1.6E-18 159.9 11.8 172 542-786 58-229 (308)
95 3rfs_A Internalin B, repeat mo 99.5 4.9E-14 1.7E-18 156.8 11.2 182 541-792 57-240 (272)
96 3m19_A Variable lymphocyte rec 99.5 2.1E-13 7.2E-18 149.7 14.5 175 547-786 14-191 (251)
97 3qfl_A MLA10; coiled-coil, (CC 99.5 2.8E-13 9.5E-18 124.6 11.6 78 10-89 4-83 (115)
98 2v1u_A Cell division control p 99.4 2.1E-12 7.2E-17 152.7 21.6 296 148-465 18-351 (387)
99 2qby_B CDC6 homolog 3, cell di 99.4 2.6E-12 8.9E-17 151.4 22.0 293 148-465 19-339 (384)
100 1h6t_A Internalin B; cell adhe 99.4 1.5E-13 5.3E-18 154.0 10.7 170 544-786 43-212 (291)
101 1fnn_A CDC6P, cell division co 99.4 6.3E-12 2.2E-16 148.6 25.0 299 148-466 16-352 (389)
102 2ca6_A RAN GTPase-activating p 99.4 1.7E-14 6E-19 170.0 2.8 37 567-603 91-132 (386)
103 2ast_B S-phase kinase-associat 99.4 1E-13 3.6E-18 160.2 8.5 124 961-1091 49-178 (336)
104 2ca6_A RAN GTPase-activating p 99.4 8.4E-15 2.9E-19 172.7 -1.5 91 539-629 24-134 (386)
105 3goz_A Leucine-rich repeat-con 99.4 1E-13 3.4E-18 161.6 5.3 123 530-653 5-150 (362)
106 4glp_A Monocyte differentiatio 99.4 1.7E-12 5.8E-17 147.5 14.8 173 935-1115 114-305 (310)
107 3m19_A Variable lymphocyte rec 99.4 2.1E-12 7.3E-17 141.6 13.8 153 570-787 14-168 (251)
108 4ezg_A Putative uncharacterize 99.4 3.5E-13 1.2E-17 141.5 7.0 103 545-649 42-144 (197)
109 3cvr_A Invasion plasmid antige 99.4 1.8E-12 6.2E-17 157.2 14.0 92 548-652 60-151 (571)
110 3cvr_A Invasion plasmid antige 99.4 5.8E-13 2E-17 161.6 9.6 177 530-793 66-249 (571)
111 3goz_A Leucine-rich repeat-con 99.4 4.2E-14 1.4E-18 164.7 -0.6 102 551-652 2-120 (362)
112 1m9s_A Internalin B; cell inva 99.4 6.5E-13 2.2E-17 163.4 9.8 172 543-787 39-210 (605)
113 1xeu_A Internalin C; cellular 99.4 3.4E-13 1.2E-17 148.5 5.7 167 546-786 18-184 (263)
114 2qby_A CDC6 homolog 1, cell di 99.3 1.7E-11 5.9E-16 144.8 19.7 296 148-465 19-348 (386)
115 2v9t_B SLIT homolog 2 protein 99.3 7.9E-12 2.7E-16 133.4 14.1 98 550-650 14-113 (220)
116 1h6t_A Internalin B; cell adhe 99.3 7.7E-12 2.6E-16 140.1 14.2 167 935-1115 43-211 (291)
117 2o6s_A Variable lymphocyte rec 99.3 4.4E-12 1.5E-16 134.7 10.9 61 725-792 123-183 (208)
118 1m9s_A Internalin B; cell inva 99.3 9.1E-12 3.1E-16 153.2 12.3 167 935-1115 40-208 (605)
119 3e6j_A Variable lymphocyte rec 99.3 2.3E-11 7.9E-16 130.8 13.9 82 549-634 21-104 (229)
120 2ell_A Acidic leucine-rich nuc 99.3 4.3E-12 1.5E-16 129.4 7.8 107 544-652 21-131 (168)
121 2v9t_B SLIT homolog 2 protein 99.3 4E-12 1.4E-16 135.8 7.6 130 530-660 39-171 (220)
122 2xot_A Amphoterin-induced prot 99.3 4.9E-12 1.7E-16 146.9 8.8 98 550-651 21-122 (361)
123 2v70_A SLIT-2, SLIT homolog 2 99.3 2.8E-11 9.5E-16 129.2 13.3 95 550-648 14-112 (220)
124 1dce_A Protein (RAB geranylger 99.2 2.2E-13 7.5E-18 166.6 -4.0 177 543-787 345-546 (567)
125 2o6s_A Variable lymphocyte rec 99.2 6.4E-12 2.2E-16 133.4 7.5 106 546-653 27-136 (208)
126 2v70_A SLIT-2, SLIT homolog 2 99.2 6.5E-12 2.2E-16 134.1 7.0 131 530-660 39-172 (220)
127 4ezg_A Putative uncharacterize 99.2 3.6E-11 1.2E-15 126.1 12.4 146 960-1114 45-191 (197)
128 1xeu_A Internalin C; cellular 99.2 8.6E-12 2.9E-16 137.3 6.7 105 542-653 36-140 (263)
129 1njg_A DNA polymerase III subu 99.2 1.3E-10 4.4E-15 127.7 16.1 199 149-363 23-231 (250)
130 3e6j_A Variable lymphocyte rec 99.2 1.6E-11 5.6E-16 132.0 8.2 124 530-655 47-173 (229)
131 2ell_A Acidic leucine-rich nuc 99.2 1.1E-11 3.8E-16 126.3 6.5 122 530-654 31-160 (168)
132 2je0_A Acidic leucine-rich nuc 99.2 9.8E-12 3.4E-16 123.8 5.8 115 531-648 25-147 (149)
133 2je0_A Acidic leucine-rich nuc 99.2 1.4E-11 4.7E-16 122.8 6.7 110 544-655 14-127 (149)
134 1w8a_A SLIT protein; signaling 99.2 2.4E-11 8.2E-16 126.6 7.2 119 538-658 22-143 (192)
135 1dce_A Protein (RAB geranylger 99.2 1.9E-12 6.5E-17 158.3 -1.6 183 529-780 355-566 (567)
136 2wfh_A SLIT homolog 2 protein 99.1 4.9E-11 1.7E-15 124.1 8.6 114 547-661 31-146 (193)
137 2xot_A Amphoterin-induced prot 99.1 4.1E-11 1.4E-15 139.2 8.0 105 547-652 39-147 (361)
138 2chg_A Replication factor C sm 99.1 6.1E-10 2.1E-14 120.1 16.2 186 149-361 17-205 (226)
139 4b8c_D Glucose-repressible alc 99.1 4.8E-11 1.6E-15 151.0 8.4 114 539-654 216-329 (727)
140 1a9n_A U2A', U2A'; complex (nu 99.1 7E-11 2.4E-15 121.3 7.1 102 548-652 43-151 (176)
141 1w8a_A SLIT protein; signaling 99.1 1.2E-10 4.2E-15 121.2 8.4 100 550-652 11-113 (192)
142 4b8c_D Glucose-repressible alc 99.1 1.5E-11 5E-16 155.7 0.6 101 551-653 205-305 (727)
143 1a9n_A U2A', U2A'; complex (nu 99.1 1.3E-10 4.5E-15 119.2 7.1 108 543-654 15-126 (176)
144 1ds9_A Outer arm dynein; leuci 99.0 4.5E-12 1.5E-16 133.1 -6.0 110 541-654 42-153 (198)
145 1hqc_A RUVB; extended AAA-ATPa 99.0 1.4E-09 5E-14 124.3 14.3 268 149-464 12-324 (324)
146 2wfh_A SLIT homolog 2 protein 99.0 4.9E-10 1.7E-14 116.5 9.3 102 550-654 13-115 (193)
147 2r9u_A Variable lymphocyte rec 99.0 6E-10 2.1E-14 113.5 8.3 102 550-655 15-119 (174)
148 3g39_A Variable lymphocyte rec 99.0 6.4E-10 2.2E-14 112.9 8.2 104 548-655 10-116 (170)
149 2o6r_A Variable lymphocyte rec 98.9 1.3E-09 4.5E-14 111.9 9.1 107 547-655 28-138 (177)
150 1sxj_B Activator 1 37 kDa subu 98.9 4.8E-09 1.7E-13 120.0 14.0 185 149-360 21-210 (323)
151 3sb4_A Hypothetical leucine ri 98.9 4.5E-09 1.5E-13 120.2 13.4 121 1171-1299 202-327 (329)
152 3sb4_A Hypothetical leucine ri 98.9 1.2E-09 4E-14 125.1 7.7 27 870-896 118-144 (329)
153 2r9u_A Variable lymphocyte rec 98.9 1.7E-09 5.9E-14 110.1 6.5 99 538-640 26-127 (174)
154 2o6r_A Variable lymphocyte rec 98.9 7.8E-09 2.7E-13 106.1 11.1 96 548-647 8-106 (177)
155 1ds9_A Outer arm dynein; leuci 98.8 1.2E-10 4.2E-15 122.1 -4.4 104 548-655 24-129 (198)
156 3g39_A Variable lymphocyte rec 98.8 4.4E-09 1.5E-13 106.7 6.7 92 539-634 24-118 (170)
157 3te6_A Regulatory protein SIR3 98.8 3.3E-08 1.1E-12 108.9 13.0 173 150-327 21-212 (318)
158 1iqp_A RFCS; clamp loader, ext 98.7 2.3E-08 7.9E-13 114.6 11.1 185 149-363 25-215 (327)
159 2ifg_A High affinity nerve gro 98.7 2E-08 6.7E-13 116.1 8.1 107 551-660 12-122 (347)
160 1jr3_A DNA polymerase III subu 98.6 2E-07 6.8E-12 108.9 14.9 197 149-361 16-222 (373)
161 2chq_A Replication factor C sm 98.6 1.8E-07 6.3E-12 106.6 13.9 182 149-360 17-204 (319)
162 4fdw_A Leucine rich hypothetic 98.4 1.3E-05 4.5E-10 93.2 23.5 59 1213-1276 295-355 (401)
163 4fdw_A Leucine rich hypothetic 98.4 1.3E-05 4.4E-10 93.3 22.6 118 982-1113 112-235 (401)
164 4fs7_A Uncharacterized protein 98.4 4.1E-06 1.4E-10 98.2 18.2 58 1214-1275 316-375 (394)
165 3pfi_A Holliday junction ATP-d 98.4 3.3E-06 1.1E-10 96.7 17.0 177 148-360 28-227 (338)
166 3bos_A Putative DNA replicatio 98.4 3.8E-07 1.3E-11 99.1 8.5 175 149-361 28-218 (242)
167 1sxj_D Activator 1 41 kDa subu 98.4 2E-06 6.8E-11 99.5 14.7 196 149-360 37-235 (353)
168 4fs7_A Uncharacterized protein 98.4 1.8E-05 6E-10 92.8 22.9 124 977-1112 65-193 (394)
169 2ifg_A High affinity nerve gro 98.3 4.5E-07 1.5E-11 104.6 7.6 89 538-628 23-114 (347)
170 1jbk_A CLPB protein; beta barr 98.3 5.1E-07 1.7E-11 94.2 7.0 45 149-199 22-66 (195)
171 3uk6_A RUVB-like 2; hexameric 98.2 1E-05 3.5E-10 94.0 16.2 198 148-360 43-303 (368)
172 2z4s_A Chromosomal replication 98.2 4.2E-06 1.4E-10 98.5 12.9 181 176-378 130-331 (440)
173 1a5t_A Delta prime, HOLB; zinc 98.2 1.5E-05 5E-10 90.6 16.3 173 154-360 7-205 (334)
174 3un9_A NLR family member X1; l 98.2 1.6E-07 5.4E-12 108.3 -0.5 34 570-603 101-136 (372)
175 3pvs_A Replication-associated 98.2 1E-05 3.4E-10 94.9 14.4 178 149-360 26-215 (447)
176 1d2n_A N-ethylmaleimide-sensit 98.2 2.3E-05 7.8E-10 86.3 15.8 171 149-351 33-228 (272)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1.7E-05 5.7E-10 87.2 14.5 187 149-359 6-221 (262)
178 1sxj_E Activator 1 40 kDa subu 98.1 5.6E-06 1.9E-10 95.6 11.1 195 149-360 14-237 (354)
179 3u61_B DNA polymerase accessor 98.1 8.4E-06 2.9E-10 92.7 12.1 174 149-356 26-212 (324)
180 3h4m_A Proteasome-activating n 98.1 1.5E-05 5E-10 88.8 13.8 186 148-359 16-230 (285)
181 1sxj_A Activator 1 95 kDa subu 98.1 7.8E-06 2.7E-10 98.8 11.3 199 148-361 38-254 (516)
182 1sxj_C Activator 1 40 kDa subu 98.1 1.4E-05 4.8E-10 91.3 12.8 177 149-358 25-210 (340)
183 3un9_A NLR family member X1; l 98.1 5.3E-07 1.8E-11 103.9 0.6 106 545-651 99-221 (372)
184 3e4g_A ATP synthase subunit S, 98.1 2.7E-06 9.2E-11 84.2 5.5 65 1054-1118 84-153 (176)
185 4gt6_A Cell surface protein; l 98.0 0.0002 7E-09 83.6 21.7 105 977-1090 81-191 (394)
186 3e4g_A ATP synthase subunit S, 98.0 3.1E-06 1.1E-10 83.7 4.5 94 1242-1355 61-155 (176)
187 1l8q_A Chromosomal replication 98.0 5.1E-05 1.8E-09 86.0 15.3 156 175-355 36-203 (324)
188 3syl_A Protein CBBX; photosynt 98.0 2.7E-05 9.4E-10 87.8 12.3 159 150-327 32-218 (309)
189 2p65_A Hypothetical protein PF 98.0 6.2E-06 2.1E-10 85.2 6.3 45 149-199 22-66 (187)
190 3n70_A Transport activator; si 98.0 6E-06 2.1E-10 80.7 5.6 114 150-295 2-115 (145)
191 3eie_A Vacuolar protein sortin 97.9 0.00013 4.6E-09 82.2 17.0 187 148-361 17-229 (322)
192 2qp9_X Vacuolar protein sortin 97.9 0.00014 4.8E-09 83.0 16.4 186 148-360 50-261 (355)
193 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00031 1.1E-08 78.9 18.9 190 148-361 11-224 (322)
194 2ra8_A Uncharacterized protein 97.9 2.6E-05 8.8E-10 88.8 9.2 138 975-1115 164-318 (362)
195 4gt6_A Cell surface protein; l 97.8 0.00081 2.8E-08 78.5 22.1 104 977-1090 108-214 (394)
196 3d8b_A Fidgetin-like protein 1 97.8 0.00022 7.6E-09 81.6 16.6 188 149-361 84-296 (357)
197 2gno_A DNA polymerase III, gam 97.8 6.3E-05 2.2E-09 83.2 10.9 149 153-326 1-152 (305)
198 4h09_A Hypothetical leucine ri 97.8 0.0026 9E-08 73.8 25.1 58 977-1041 63-122 (379)
199 3rw6_A Nuclear RNA export fact 97.8 1.5E-05 5E-10 85.7 5.0 79 544-623 167-257 (267)
200 4h09_A Hypothetical leucine ri 97.8 0.0028 9.6E-08 73.5 25.1 100 978-1089 41-143 (379)
201 2ra8_A Uncharacterized protein 97.8 6.5E-05 2.2E-09 85.5 10.4 58 934-992 168-228 (362)
202 3ec2_A DNA replication protein 97.8 2.9E-05 9.8E-10 79.4 6.8 121 154-295 19-142 (180)
203 2zan_A Vacuolar protein sortin 97.8 0.0004 1.4E-08 81.8 17.5 190 148-361 133-346 (444)
204 1in4_A RUVB, holliday junction 97.7 0.00036 1.2E-08 79.1 16.3 177 149-359 25-222 (334)
205 3pxg_A Negative regulator of g 97.7 6.8E-05 2.3E-09 89.1 10.8 145 149-326 180-338 (468)
206 1io0_A Tropomodulin; LRR prote 97.7 1.1E-05 3.9E-10 82.6 3.3 112 540-651 29-161 (185)
207 3b9p_A CG5977-PA, isoform A; A 97.7 0.00039 1.3E-08 77.7 15.9 185 149-360 21-233 (297)
208 1qvr_A CLPB protein; coiled co 97.7 3.3E-05 1.1E-09 99.6 7.5 155 149-325 170-344 (854)
209 2w58_A DNAI, primosome compone 97.7 3.1E-05 1.1E-09 80.9 5.7 118 157-295 37-158 (202)
210 3vfd_A Spastin; ATPase, microt 97.7 0.00034 1.2E-08 81.2 14.6 188 148-360 114-326 (389)
211 3co5_A Putative two-component 97.6 2.3E-05 8E-10 76.2 3.5 110 150-295 5-115 (143)
212 3cf0_A Transitional endoplasmi 97.6 0.00038 1.3E-08 77.5 13.7 181 149-355 15-223 (301)
213 3rw6_A Nuclear RNA export fact 97.6 1.3E-05 4.4E-10 86.1 0.9 103 544-648 138-258 (267)
214 2c9o_A RUVB-like 1; hexameric 97.6 0.00028 9.6E-09 83.7 12.5 94 258-359 297-409 (456)
215 3hu3_A Transitional endoplasmi 97.5 0.00034 1.2E-08 82.8 12.5 185 149-359 204-414 (489)
216 4fcw_A Chaperone protein CLPB; 97.5 0.00047 1.6E-08 77.7 13.1 121 150-279 18-142 (311)
217 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00091 3.1E-08 85.4 15.9 155 149-326 186-362 (758)
218 2bjv_A PSP operon transcriptio 97.5 0.0002 6.9E-09 78.4 8.5 46 150-199 7-52 (265)
219 4b4t_J 26S protease regulatory 97.4 0.00091 3.1E-08 75.4 13.6 179 149-353 148-354 (405)
220 1io0_A Tropomodulin; LRR prote 97.4 0.00017 5.8E-09 73.7 6.4 111 512-628 31-162 (185)
221 1ojl_A Transcriptional regulat 97.4 0.00031 1E-08 78.1 8.7 46 149-198 2-47 (304)
222 3pxi_A Negative regulator of g 97.4 0.00034 1.2E-08 89.1 10.3 149 149-326 180-338 (758)
223 4b4t_L 26S protease subunit RP 97.4 0.0014 4.9E-08 75.3 14.3 179 149-353 181-387 (437)
224 1lv7_A FTSH; alpha/beta domain 97.3 0.0011 3.9E-08 71.9 12.3 185 148-358 11-223 (257)
225 1ofh_A ATP-dependent HSL prote 97.3 0.00055 1.9E-08 77.1 10.1 50 149-198 15-72 (310)
226 3pxi_A Negative regulator of g 97.3 0.00031 1.1E-08 89.4 8.3 154 149-326 491-675 (758)
227 4b4t_K 26S protease regulatory 97.3 0.0015 5.3E-08 74.9 13.0 51 148-198 171-228 (428)
228 1qvr_A CLPB protein; coiled co 97.2 0.0079 2.7E-07 77.4 20.7 137 149-295 558-710 (854)
229 2r62_A Cell division protease 97.2 0.0004 1.4E-08 76.2 7.5 157 149-326 11-196 (268)
230 2kjq_A DNAA-related protein; s 97.2 0.00013 4.3E-09 71.3 3.0 24 176-199 36-59 (149)
231 4b4t_H 26S protease regulatory 97.2 0.0026 9E-08 72.7 13.4 178 149-352 209-414 (467)
232 4b4t_M 26S protease regulatory 97.1 0.002 6.8E-08 74.0 11.9 179 148-352 180-386 (434)
233 4b4t_I 26S protease regulatory 97.1 0.0044 1.5E-07 70.1 13.7 178 149-352 182-387 (437)
234 2ce7_A Cell division protein F 97.1 0.0036 1.2E-07 73.2 13.7 179 149-353 16-221 (476)
235 2r44_A Uncharacterized protein 97.0 0.003 1E-07 71.6 12.2 149 150-327 28-199 (331)
236 3m6a_A ATP-dependent protease 97.0 0.0022 7.4E-08 77.5 11.2 162 149-326 81-266 (543)
237 2cvh_A DNA repair and recombin 96.8 0.0038 1.3E-07 65.9 9.7 87 175-267 19-116 (220)
238 2qgz_A Helicase loader, putati 96.7 0.00066 2.3E-08 75.4 3.3 42 155-199 134-175 (308)
239 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0037 1.3E-07 79.7 9.9 120 149-280 458-581 (758)
240 3cf2_A TER ATPase, transitiona 96.6 0.016 5.4E-07 72.0 14.9 179 149-353 204-407 (806)
241 3t15_A Ribulose bisphosphate c 96.6 0.014 4.8E-07 64.4 13.2 25 174-198 34-58 (293)
242 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.0086 2.9E-07 70.7 11.7 42 150-199 23-64 (500)
243 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0013 4.3E-08 71.5 4.2 69 176-267 123-193 (331)
244 2b8t_A Thymidine kinase; deoxy 96.5 0.0014 4.9E-08 68.0 4.2 116 175-298 11-128 (223)
245 1ixz_A ATP-dependent metallopr 96.3 0.037 1.3E-06 59.7 14.1 180 148-353 15-221 (254)
246 2dhr_A FTSH; AAA+ protein, hex 96.1 0.036 1.2E-06 65.2 13.7 177 147-353 29-236 (499)
247 1g8p_A Magnesium-chelatase 38 96.1 0.013 4.5E-07 66.9 9.6 44 149-198 24-67 (350)
248 1ypw_A Transitional endoplasmi 96.1 0.018 6.1E-07 73.0 11.4 158 148-326 203-385 (806)
249 1iy2_A ATP-dependent metallopr 96.0 0.064 2.2E-06 58.6 14.3 181 147-353 38-245 (278)
250 3hr8_A Protein RECA; alpha and 96.0 0.012 4E-07 65.9 8.2 86 175-267 60-150 (356)
251 3io5_A Recombination and repai 96.0 0.013 4.4E-07 63.2 8.0 85 178-267 30-122 (333)
252 1jr3_D DNA polymerase III, del 95.9 0.042 1.5E-06 62.3 12.9 157 176-359 18-184 (343)
253 1um8_A ATP-dependent CLP prote 95.9 0.026 8.9E-07 65.0 11.1 50 149-198 21-94 (376)
254 1g5t_A COB(I)alamin adenosyltr 95.9 0.0039 1.3E-07 62.5 3.4 114 177-296 29-163 (196)
255 1v5w_A DMC1, meiotic recombina 95.9 0.021 7.1E-07 64.4 9.6 92 174-266 120-229 (343)
256 2x8a_A Nuclear valosin-contain 95.6 0.032 1.1E-06 60.6 9.6 155 149-326 10-191 (274)
257 2z43_A DNA repair and recombin 95.6 0.026 8.8E-07 63.2 9.0 90 175-265 106-212 (324)
258 1n0w_A DNA repair protein RAD5 95.6 0.021 7.3E-07 61.1 8.0 92 175-267 23-130 (243)
259 2zr9_A Protein RECA, recombina 95.3 0.028 9.7E-07 63.2 8.0 86 175-267 60-150 (349)
260 1u94_A RECA protein, recombina 95.3 0.029 1E-06 63.1 8.0 85 175-266 62-151 (356)
261 1xp8_A RECA protein, recombina 95.2 0.031 1.1E-06 63.1 8.0 85 175-266 73-162 (366)
262 3rfe_A Platelet glycoprotein I 95.2 0.022 7.4E-07 53.7 5.6 53 550-604 11-66 (130)
263 2px0_A Flagellar biosynthesis 95.1 0.035 1.2E-06 60.8 7.9 87 175-265 104-191 (296)
264 3ice_A Transcription terminati 95.1 0.019 6.5E-07 63.5 5.6 98 160-266 163-271 (422)
265 1odf_A YGR205W, hypothetical 3 95.1 0.087 3E-06 57.4 11.0 83 173-255 28-117 (290)
266 2i1q_A DNA repair and recombin 95.1 0.029 1E-06 62.9 7.4 90 175-265 97-213 (322)
267 1rz3_A Hypothetical protein rb 95.0 0.021 7.2E-07 58.9 5.5 42 154-198 3-44 (201)
268 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.035 1.2E-06 59.0 7.5 116 176-296 23-168 (235)
269 3tqc_A Pantothenate kinase; bi 94.4 0.1 3.5E-06 57.5 9.3 99 151-256 69-171 (321)
270 3bh0_A DNAB-like replicative h 94.4 0.11 3.9E-06 57.6 9.8 52 175-230 67-118 (315)
271 2orw_A Thymidine kinase; TMTK, 94.4 0.0065 2.2E-07 61.5 -0.4 108 177-295 4-112 (184)
272 1pzn_A RAD51, DNA repair and r 94.3 0.066 2.3E-06 60.3 7.7 93 174-267 129-242 (349)
273 4a74_A DNA repair and recombin 94.3 0.11 3.8E-06 54.8 9.2 45 175-219 24-72 (231)
274 1sky_E F1-ATPase, F1-ATP synth 94.2 0.068 2.3E-06 61.5 7.5 90 177-267 152-256 (473)
275 1vma_A Cell division protein F 94.1 0.15 5.1E-06 55.9 9.7 90 174-266 102-196 (306)
276 3l0o_A Transcription terminati 94.0 0.021 7.1E-07 63.1 2.6 54 159-218 163-217 (427)
277 3cf2_A TER ATPase, transitiona 93.9 0.18 6.3E-06 62.6 11.2 100 147-267 475-581 (806)
278 3c8u_A Fructokinase; YP_612366 93.9 0.044 1.5E-06 56.9 4.9 38 157-198 7-44 (208)
279 3dm5_A SRP54, signal recogniti 93.9 0.39 1.3E-05 55.1 12.9 24 175-198 99-122 (443)
280 3lda_A DNA repair protein RAD5 93.8 0.11 3.9E-06 59.2 8.3 91 175-266 177-283 (400)
281 1gvn_B Zeta; postsegregational 93.7 0.057 2E-06 59.0 5.6 40 158-198 16-55 (287)
282 1qhx_A CPT, protein (chloramph 93.7 0.029 1E-06 56.5 3.0 22 177-198 4-25 (178)
283 1zp6_A Hypothetical protein AT 93.5 0.039 1.3E-06 56.4 3.6 25 175-199 8-32 (191)
284 1ypw_A Transitional endoplasmi 93.4 0.042 1.4E-06 69.6 4.3 52 147-198 475-533 (806)
285 3kl4_A SRP54, signal recogniti 93.3 0.39 1.3E-05 55.2 11.6 91 174-266 95-189 (433)
286 3uie_A Adenylyl-sulfate kinase 93.2 0.051 1.7E-06 56.0 3.9 24 175-198 24-47 (200)
287 3upu_A ATP-dependent DNA helic 93.2 0.082 2.8E-06 62.5 6.2 108 178-298 47-167 (459)
288 3kb2_A SPBC2 prophage-derived 93.2 0.036 1.2E-06 55.5 2.8 22 177-198 2-23 (173)
289 1ly1_A Polynucleotide kinase; 93.2 0.042 1.5E-06 55.5 3.3 22 177-198 3-24 (181)
290 3hws_A ATP-dependent CLP prote 93.2 0.056 1.9E-06 61.8 4.5 49 150-198 16-73 (363)
291 3lw7_A Adenylate kinase relate 93.2 0.042 1.4E-06 55.3 3.2 20 177-196 2-21 (179)
292 1kgd_A CASK, peripheral plasma 93.1 0.048 1.6E-06 55.0 3.4 23 176-198 5-27 (180)
293 3vaa_A Shikimate kinase, SK; s 93.1 0.044 1.5E-06 56.4 3.2 23 176-198 25-47 (199)
294 2p5t_B PEZT; postsegregational 93.1 0.07 2.4E-06 57.3 4.9 40 158-198 15-54 (253)
295 2ga8_A Hypothetical 39.9 kDa p 93.0 0.098 3.3E-06 57.8 5.8 45 152-198 2-46 (359)
296 2q6t_A DNAB replication FORK h 93.0 1.1 3.7E-05 52.5 15.3 53 175-230 199-251 (444)
297 2xxa_A Signal recognition part 93.0 0.21 7.1E-06 57.8 8.9 41 174-215 98-138 (433)
298 2ck3_D ATP synthase subunit be 93.0 0.19 6.6E-06 57.5 8.4 65 160-230 142-207 (482)
299 3fwy_A Light-independent proto 92.9 0.091 3.1E-06 58.0 5.6 41 174-216 46-86 (314)
300 3tau_A Guanylate kinase, GMP k 92.7 0.057 2E-06 55.9 3.4 25 175-199 7-31 (208)
301 1kag_A SKI, shikimate kinase I 92.7 0.044 1.5E-06 54.9 2.5 22 177-198 5-26 (173)
302 1tue_A Replication protein E1; 92.6 0.075 2.6E-06 53.4 3.9 36 158-198 45-80 (212)
303 1knq_A Gluconate kinase; ALFA/ 92.6 0.079 2.7E-06 53.1 4.2 24 175-198 7-30 (175)
304 2dr3_A UPF0273 protein PH0284; 92.6 0.19 6.4E-06 53.7 7.5 40 175-216 22-61 (247)
305 3cmu_A Protein RECA, recombina 92.6 0.17 5.9E-06 68.7 8.5 85 175-266 1426-1515(2050)
306 3trf_A Shikimate kinase, SK; a 92.6 0.051 1.7E-06 55.2 2.8 23 176-198 5-27 (185)
307 2ffh_A Protein (FFH); SRP54, s 92.6 0.31 1.1E-05 55.9 9.5 25 175-199 97-121 (425)
308 4eun_A Thermoresistant glucoki 92.6 0.058 2E-06 55.5 3.2 24 175-198 28-51 (200)
309 2rhm_A Putative kinase; P-loop 92.5 0.06 2E-06 55.1 3.3 24 175-198 4-27 (193)
310 2r6a_A DNAB helicase, replicat 92.5 1.5 5E-05 51.5 15.6 51 175-228 202-252 (454)
311 1j8m_F SRP54, signal recogniti 92.4 0.29 1E-05 53.4 8.8 88 176-265 98-189 (297)
312 4gp7_A Metallophosphoesterase; 92.4 0.069 2.3E-06 53.3 3.4 24 175-198 8-31 (171)
313 1ex7_A Guanylate kinase; subst 92.4 0.04 1.4E-06 55.4 1.6 22 177-198 2-23 (186)
314 3e70_C DPA, signal recognition 92.3 0.46 1.6E-05 52.7 10.2 25 174-198 127-151 (328)
315 3tr0_A Guanylate kinase, GMP k 92.3 0.069 2.4E-06 55.2 3.4 23 176-198 7-29 (205)
316 3a00_A Guanylate kinase, GMP k 92.2 0.057 2E-06 54.8 2.5 22 177-198 2-23 (186)
317 3t61_A Gluconokinase; PSI-biol 92.2 0.062 2.1E-06 55.4 2.8 23 176-198 18-40 (202)
318 2bdt_A BH3686; alpha-beta prot 92.2 0.077 2.6E-06 54.0 3.5 22 177-198 3-24 (189)
319 1uj2_A Uridine-cytidine kinase 92.1 0.073 2.5E-06 57.1 3.4 25 174-198 20-44 (252)
320 4a1f_A DNAB helicase, replicat 92.1 0.32 1.1E-05 53.9 8.6 53 175-231 45-97 (338)
321 3ney_A 55 kDa erythrocyte memb 92.1 0.082 2.8E-06 53.4 3.5 24 175-198 18-41 (197)
322 2qor_A Guanylate kinase; phosp 92.1 0.061 2.1E-06 55.6 2.7 24 175-198 11-34 (204)
323 3jvv_A Twitching mobility prot 92.1 0.062 2.1E-06 60.4 2.8 110 177-299 124-234 (356)
324 1y63_A LMAJ004144AAA protein; 92.1 0.072 2.5E-06 53.9 3.1 24 175-198 9-32 (184)
325 1nks_A Adenylate kinase; therm 92.1 0.066 2.3E-06 54.7 2.9 22 177-198 2-23 (194)
326 3iij_A Coilin-interacting nucl 92.0 0.064 2.2E-06 54.1 2.7 23 176-198 11-33 (180)
327 1ls1_A Signal recognition part 92.0 0.3 1E-05 53.5 8.2 25 175-199 97-121 (295)
328 2ze6_A Isopentenyl transferase 92.0 0.08 2.7E-06 56.7 3.5 22 177-198 2-23 (253)
329 1pgv_A TMD-1, tropomodulin TMD 91.9 0.18 6.1E-06 50.8 5.7 85 543-627 37-136 (197)
330 1ye8_A Protein THEP1, hypothet 91.9 0.082 2.8E-06 52.9 3.3 22 178-199 2-23 (178)
331 2qt1_A Nicotinamide riboside k 91.9 0.089 3E-06 54.5 3.7 25 174-198 19-43 (207)
332 1zuh_A Shikimate kinase; alpha 91.8 0.072 2.5E-06 53.0 2.8 23 176-198 7-29 (168)
333 1tev_A UMP-CMP kinase; ploop, 91.8 0.081 2.8E-06 54.2 3.3 23 176-198 3-25 (196)
334 3umf_A Adenylate kinase; rossm 91.8 0.088 3E-06 54.3 3.4 25 174-198 27-51 (217)
335 2yvu_A Probable adenylyl-sulfa 91.8 0.11 3.6E-06 52.8 4.1 26 174-199 11-36 (186)
336 2j41_A Guanylate kinase; GMP, 91.8 0.085 2.9E-06 54.7 3.4 24 176-199 6-29 (207)
337 1ukz_A Uridylate kinase; trans 91.8 0.11 3.6E-06 53.7 4.1 25 174-198 13-37 (203)
338 3asz_A Uridine kinase; cytidin 91.8 0.086 2.9E-06 54.8 3.4 24 175-198 5-28 (211)
339 1kht_A Adenylate kinase; phosp 91.8 0.076 2.6E-06 54.2 3.0 22 177-198 4-25 (192)
340 1zu4_A FTSY; GTPase, signal re 91.7 0.5 1.7E-05 52.2 9.7 25 174-198 103-127 (320)
341 2j37_W Signal recognition part 91.7 0.72 2.5E-05 54.2 11.4 25 174-198 99-123 (504)
342 1lvg_A Guanylate kinase, GMP k 91.7 0.069 2.4E-06 54.7 2.5 22 177-198 5-26 (198)
343 1uf9_A TT1252 protein; P-loop, 91.6 0.095 3.2E-06 54.1 3.5 25 174-198 6-30 (203)
344 1via_A Shikimate kinase; struc 91.6 0.071 2.4E-06 53.5 2.5 21 178-198 6-26 (175)
345 3llm_A ATP-dependent RNA helic 91.6 0.3 1E-05 51.6 7.5 91 177-268 77-188 (235)
346 3rfe_A Platelet glycoprotein I 91.6 0.16 5.5E-06 47.6 4.8 53 573-628 11-66 (130)
347 1fx0_B ATP synthase beta chain 91.6 0.32 1.1E-05 56.0 8.0 65 160-230 154-219 (498)
348 1pgv_A TMD-1, tropomodulin TMD 91.6 0.16 5.6E-06 51.0 5.0 90 539-628 62-168 (197)
349 3a4m_A L-seryl-tRNA(SEC) kinas 91.5 0.1 3.4E-06 56.3 3.7 23 176-198 4-26 (260)
350 1htw_A HI0065; nucleotide-bind 91.5 0.12 4E-06 50.5 3.8 24 175-198 32-55 (158)
351 1xjc_A MOBB protein homolog; s 91.5 0.096 3.3E-06 51.4 3.1 24 175-198 3-26 (169)
352 3cm0_A Adenylate kinase; ATP-b 91.5 0.11 3.6E-06 52.8 3.6 23 176-198 4-26 (186)
353 1jjv_A Dephospho-COA kinase; P 91.5 0.1 3.5E-06 54.0 3.6 22 177-198 3-24 (206)
354 2cdn_A Adenylate kinase; phosp 91.4 0.098 3.3E-06 53.9 3.4 24 175-198 19-42 (201)
355 2c95_A Adenylate kinase 1; tra 91.4 0.084 2.9E-06 54.1 2.8 23 176-198 9-31 (196)
356 3tlx_A Adenylate kinase 2; str 91.3 0.14 4.9E-06 54.3 4.6 24 175-198 28-51 (243)
357 2plr_A DTMP kinase, probable t 91.3 0.1 3.5E-06 54.3 3.4 24 176-199 4-27 (213)
358 3aez_A Pantothenate kinase; tr 91.3 0.11 3.9E-06 57.2 3.8 25 174-198 88-112 (312)
359 2jaq_A Deoxyguanosine kinase; 91.3 0.091 3.1E-06 54.3 3.0 21 178-198 2-22 (205)
360 2iyv_A Shikimate kinase, SK; t 91.3 0.07 2.4E-06 54.1 2.0 22 177-198 3-24 (184)
361 2bbw_A Adenylate kinase 4, AK4 91.2 0.099 3.4E-06 55.9 3.3 23 176-198 27-49 (246)
362 1rj9_A FTSY, signal recognitio 91.2 0.11 3.8E-06 57.0 3.7 24 175-198 101-124 (304)
363 1znw_A Guanylate kinase, GMP k 91.2 0.11 3.6E-06 53.9 3.3 23 176-198 20-42 (207)
364 2qe7_A ATP synthase subunit al 91.1 0.21 7.3E-06 57.5 6.0 98 160-266 151-264 (502)
365 2pez_A Bifunctional 3'-phospho 91.1 0.12 4.3E-06 51.9 3.7 24 175-198 4-27 (179)
366 3mfy_A V-type ATP synthase alp 91.1 0.51 1.7E-05 54.8 8.9 59 160-227 216-275 (588)
367 2jeo_A Uridine-cytidine kinase 91.1 0.13 4.3E-06 55.0 3.9 24 175-198 24-47 (245)
368 1z6g_A Guanylate kinase; struc 91.0 0.093 3.2E-06 54.8 2.7 23 176-198 23-45 (218)
369 1s96_A Guanylate kinase, GMP k 91.0 0.11 3.8E-06 54.0 3.2 24 175-198 15-38 (219)
370 2if2_A Dephospho-COA kinase; a 91.0 0.1 3.5E-06 53.9 3.0 21 178-198 3-23 (204)
371 3e1s_A Exodeoxyribonuclease V, 91.0 0.38 1.3E-05 58.1 8.3 106 177-296 205-316 (574)
372 2r9v_A ATP synthase subunit al 91.0 0.24 8.3E-06 57.1 6.2 98 160-266 164-277 (515)
373 1e6c_A Shikimate kinase; phosp 91.0 0.083 2.9E-06 52.8 2.2 22 177-198 3-24 (173)
374 2z0h_A DTMP kinase, thymidylat 91.0 0.23 7.9E-06 50.8 5.7 21 178-198 2-22 (197)
375 4edh_A DTMP kinase, thymidylat 91.0 0.53 1.8E-05 48.5 8.3 25 175-199 5-29 (213)
376 1cke_A CK, MSSA, protein (cyti 91.0 0.11 3.8E-06 54.7 3.3 22 177-198 6-27 (227)
377 3zvl_A Bifunctional polynucleo 90.9 0.39 1.3E-05 55.6 8.2 25 174-198 256-280 (416)
378 1qf9_A UMP/CMP kinase, protein 90.9 0.13 4.3E-06 52.6 3.6 24 175-198 5-28 (194)
379 2yhs_A FTSY, cell division pro 90.9 0.57 2E-05 54.3 9.2 43 174-219 291-333 (503)
380 1nn5_A Similar to deoxythymidy 90.9 0.21 7.2E-06 51.9 5.4 23 176-198 9-31 (215)
381 2bwj_A Adenylate kinase 5; pho 90.8 0.095 3.3E-06 53.8 2.6 22 177-198 13-34 (199)
382 2vli_A Antibiotic resistance p 90.8 0.081 2.8E-06 53.5 1.9 23 176-198 5-27 (183)
383 2pt5_A Shikimate kinase, SK; a 90.7 0.12 3.9E-06 51.5 3.0 21 178-198 2-22 (168)
384 2grj_A Dephospho-COA kinase; T 90.7 0.13 4.3E-06 52.2 3.2 24 175-198 11-34 (192)
385 2hf9_A Probable hydrogenase ni 90.6 0.15 5E-06 53.7 3.8 25 175-199 37-61 (226)
386 1aky_A Adenylate kinase; ATP:A 90.5 0.12 4.1E-06 54.1 3.0 23 176-198 4-26 (220)
387 3cmu_A Protein RECA, recombina 90.4 0.4 1.4E-05 65.2 8.5 86 175-267 382-472 (2050)
388 2f6r_A COA synthase, bifunctio 90.4 0.15 5E-06 55.6 3.6 25 174-198 73-97 (281)
389 3hjn_A DTMP kinase, thymidylat 90.3 0.39 1.3E-05 48.9 6.6 49 178-228 2-50 (197)
390 4e22_A Cytidylate kinase; P-lo 90.3 0.14 4.7E-06 54.8 3.4 23 176-198 27-49 (252)
391 2wwf_A Thymidilate kinase, put 90.3 0.12 4E-06 53.8 2.7 24 175-198 9-32 (212)
392 1sq5_A Pantothenate kinase; P- 90.3 0.26 9E-06 54.4 5.7 25 174-198 78-102 (308)
393 2pbr_A DTMP kinase, thymidylat 90.2 0.13 4.5E-06 52.5 3.0 21 178-198 2-22 (195)
394 1g41_A Heat shock protein HSLU 90.2 0.2 7E-06 57.5 4.7 50 149-198 15-72 (444)
395 3vr4_D V-type sodium ATPase su 90.0 0.3 1E-05 55.6 5.8 88 177-266 152-258 (465)
396 2j9r_A Thymidine kinase; TK1, 90.0 0.29 9.8E-06 49.8 5.1 113 175-298 27-140 (214)
397 2ck3_A ATP synthase subunit al 90.0 0.38 1.3E-05 55.5 6.7 102 160-266 151-272 (510)
398 1m7g_A Adenylylsulfate kinase; 90.0 0.18 6.1E-06 52.3 3.8 24 175-198 24-47 (211)
399 2wsm_A Hydrogenase expression/ 90.0 0.13 4.6E-06 53.8 2.8 41 153-199 13-53 (221)
400 2v54_A DTMP kinase, thymidylat 89.9 0.14 4.9E-06 52.7 3.0 24 176-199 4-27 (204)
401 3end_A Light-independent proto 89.9 0.3 1E-05 54.1 5.8 45 173-219 38-82 (307)
402 3vr4_A V-type sodium ATPase ca 89.9 0.6 2E-05 54.5 8.2 58 160-226 221-279 (600)
403 1zd8_A GTP:AMP phosphotransfer 89.8 0.14 4.8E-06 53.9 2.8 23 176-198 7-29 (227)
404 3b9q_A Chloroplast SRP recepto 89.7 0.18 6.2E-06 55.3 3.7 24 175-198 99-122 (302)
405 3cmw_A Protein RECA, recombina 89.7 0.39 1.3E-05 64.5 7.5 86 175-267 382-472 (1706)
406 4akg_A Glutathione S-transfera 89.7 1.4 4.8E-05 62.4 13.2 80 177-267 1268-1347(2695)
407 1zak_A Adenylate kinase; ATP:A 89.7 0.12 4.3E-06 54.1 2.3 23 176-198 5-27 (222)
408 1vht_A Dephospho-COA kinase; s 89.6 0.2 6.8E-06 52.3 3.8 23 176-198 4-26 (218)
409 3a8t_A Adenylate isopentenyltr 89.6 0.21 7E-06 54.9 4.0 24 175-198 39-62 (339)
410 3fb4_A Adenylate kinase; psych 89.5 0.16 5.5E-06 52.9 3.0 21 178-198 2-22 (216)
411 1ny5_A Transcriptional regulat 89.5 0.97 3.3E-05 51.7 9.8 45 150-198 138-182 (387)
412 2i3b_A HCR-ntpase, human cance 89.4 0.16 5.3E-06 51.4 2.7 22 178-199 3-24 (189)
413 3tif_A Uncharacterized ABC tra 89.4 0.19 6.4E-06 53.0 3.3 23 176-198 31-53 (235)
414 3dl0_A Adenylate kinase; phosp 89.3 0.17 5.8E-06 52.8 3.0 21 178-198 2-22 (216)
415 3p32_A Probable GTPase RV1496/ 89.3 0.33 1.1E-05 54.9 5.6 25 174-198 77-101 (355)
416 3nwj_A ATSK2; P loop, shikimat 89.3 0.15 5.3E-06 54.0 2.7 22 177-198 49-70 (250)
417 3d3q_A TRNA delta(2)-isopenten 89.2 0.2 6.8E-06 55.3 3.5 22 177-198 8-29 (340)
418 3lnc_A Guanylate kinase, GMP k 89.2 0.13 4.5E-06 54.3 2.1 23 176-198 27-50 (231)
419 3exa_A TRNA delta(2)-isopenten 89.2 0.21 7.3E-06 53.9 3.7 23 176-198 3-25 (322)
420 2ehv_A Hypothetical protein PH 89.2 0.16 5.6E-06 54.4 2.9 24 175-198 29-52 (251)
421 2ged_A SR-beta, signal recogni 89.2 0.28 9.5E-06 49.9 4.5 26 174-199 46-71 (193)
422 2onk_A Molybdate/tungstate ABC 89.2 0.19 6.3E-06 53.1 3.2 22 177-198 25-46 (240)
423 2f1r_A Molybdopterin-guanine d 89.1 0.12 4.1E-06 51.2 1.5 22 177-198 3-24 (171)
424 3k1j_A LON protease, ATP-depen 89.1 0.21 7.2E-06 61.2 4.1 43 149-199 41-83 (604)
425 3oaa_A ATP synthase subunit al 89.0 0.67 2.3E-05 53.2 7.7 98 160-266 151-264 (513)
426 4eaq_A DTMP kinase, thymidylat 88.9 0.33 1.1E-05 50.8 4.9 25 175-199 25-49 (229)
427 3r20_A Cytidylate kinase; stru 88.9 0.21 7.2E-06 52.0 3.3 23 176-198 9-31 (233)
428 1q57_A DNA primase/helicase; d 88.9 0.91 3.1E-05 54.2 9.4 54 175-231 241-294 (503)
429 2cbz_A Multidrug resistance-as 88.8 0.21 7.3E-06 52.6 3.3 24 176-199 31-54 (237)
430 2qmh_A HPR kinase/phosphorylas 88.8 0.22 7.6E-06 49.7 3.1 24 176-199 34-57 (205)
431 1np6_A Molybdopterin-guanine d 88.7 0.23 7.8E-06 49.3 3.2 24 175-198 5-28 (174)
432 3foz_A TRNA delta(2)-isopenten 88.7 0.25 8.5E-06 53.4 3.7 24 175-198 9-32 (316)
433 1yrb_A ATP(GTP)binding protein 88.7 0.28 9.5E-06 52.9 4.2 25 174-198 12-36 (262)
434 1b0u_A Histidine permease; ABC 88.6 0.22 7.5E-06 53.4 3.3 24 175-198 31-54 (262)
435 1gtv_A TMK, thymidylate kinase 88.6 0.11 3.7E-06 54.1 0.9 21 178-198 2-22 (214)
436 3b85_A Phosphate starvation-in 88.6 0.3 1E-05 50.1 4.2 22 177-198 23-44 (208)
437 1xx6_A Thymidine kinase; NESG, 88.6 0.17 5.8E-06 51.1 2.3 111 175-297 7-119 (191)
438 2pcj_A ABC transporter, lipopr 88.6 0.2 6.8E-06 52.3 2.9 23 176-198 30-52 (224)
439 3crm_A TRNA delta(2)-isopenten 88.6 0.21 7.3E-06 54.6 3.2 23 176-198 5-27 (323)
440 2vp4_A Deoxynucleoside kinase; 88.6 0.24 8.3E-06 52.1 3.6 25 174-198 18-42 (230)
441 2og2_A Putative signal recogni 88.5 0.24 8.4E-06 55.4 3.7 24 175-198 156-179 (359)
442 3be4_A Adenylate kinase; malar 88.5 0.16 5.6E-06 52.9 2.1 22 177-198 6-27 (217)
443 2r8r_A Sensor protein; KDPD, P 88.5 0.44 1.5E-05 48.8 5.2 40 178-219 8-47 (228)
444 2olj_A Amino acid ABC transpor 88.5 0.23 7.9E-06 53.1 3.3 24 175-198 49-72 (263)
445 1mv5_A LMRA, multidrug resista 88.4 0.26 9.1E-06 52.2 3.7 24 175-198 27-50 (243)
446 3ake_A Cytidylate kinase; CMP 88.4 0.23 8E-06 51.3 3.3 21 178-198 4-24 (208)
447 3ld9_A DTMP kinase, thymidylat 88.4 0.48 1.6E-05 49.0 5.5 26 174-199 19-44 (223)
448 3cmw_A Protein RECA, recombina 88.3 0.56 1.9E-05 63.0 7.5 85 174-265 1429-1518(1706)
449 3sr0_A Adenylate kinase; phosp 88.3 0.23 7.8E-06 50.9 3.0 21 178-198 2-22 (206)
450 3gfo_A Cobalt import ATP-bindi 88.2 0.23 8E-06 53.4 3.2 23 176-198 34-56 (275)
451 2xb4_A Adenylate kinase; ATP-b 88.1 0.23 7.8E-06 52.0 3.0 21 178-198 2-22 (223)
452 2c61_A A-type ATP synthase non 88.0 0.3 1E-05 56.0 4.1 101 160-265 141-258 (469)
453 1vpl_A ABC transporter, ATP-bi 88.0 0.26 8.8E-06 52.6 3.3 24 175-198 40-63 (256)
454 1ak2_A Adenylate kinase isoenz 88.0 0.24 8.3E-06 52.2 3.1 23 176-198 16-38 (233)
455 1sgw_A Putative ABC transporte 87.9 0.22 7.5E-06 51.4 2.6 22 177-198 36-57 (214)
456 2wji_A Ferrous iron transport 87.8 0.32 1.1E-05 47.9 3.8 23 177-199 4-26 (165)
457 2ghi_A Transport protein; mult 87.8 0.27 9.2E-06 52.6 3.3 23 176-198 46-68 (260)
458 2v9p_A Replication protein E1; 87.8 0.26 8.8E-06 53.7 3.2 24 175-198 125-148 (305)
459 1ji0_A ABC transporter; ATP bi 87.8 0.26 9.1E-06 52.0 3.2 23 176-198 32-54 (240)
460 2zej_A Dardarin, leucine-rich 87.8 0.26 8.9E-06 49.7 3.1 22 178-199 4-25 (184)
461 3bgw_A DNAB-like replicative h 87.7 1.3 4.3E-05 51.6 9.2 52 175-230 196-247 (444)
462 4g1u_C Hemin import ATP-bindin 87.7 0.26 8.9E-06 52.9 3.2 23 176-198 37-59 (266)
463 2zu0_C Probable ATP-dependent 87.7 0.28 9.5E-06 52.8 3.4 24 175-198 45-68 (267)
464 3gqb_B V-type ATP synthase bet 87.7 0.28 9.7E-06 55.8 3.5 91 176-266 147-261 (464)
465 2pze_A Cystic fibrosis transme 87.6 0.27 9.3E-06 51.5 3.2 23 176-198 34-56 (229)
466 3vkw_A Replicase large subunit 87.6 0.97 3.3E-05 51.6 7.9 27 172-198 157-183 (446)
467 1g6h_A High-affinity branched- 87.6 0.27 9.3E-06 52.6 3.2 23 176-198 33-55 (257)
468 1e4v_A Adenylate kinase; trans 87.6 0.24 8.1E-06 51.5 2.7 21 178-198 2-22 (214)
469 2ixe_A Antigen peptide transpo 87.6 0.28 9.7E-06 52.8 3.3 24 175-198 44-67 (271)
470 1a7j_A Phosphoribulokinase; tr 87.5 0.14 4.9E-06 55.9 1.0 24 175-198 4-27 (290)
471 2ff7_A Alpha-hemolysin translo 87.5 0.28 9.6E-06 52.0 3.2 23 176-198 35-57 (247)
472 2eyu_A Twitching motility prot 87.5 0.33 1.1E-05 51.9 3.8 109 175-298 24-135 (261)
473 1fx0_A ATP synthase alpha chai 87.5 0.36 1.2E-05 55.7 4.3 88 175-266 162-265 (507)
474 2d2e_A SUFC protein; ABC-ATPas 87.4 0.29 9.9E-06 52.1 3.3 23 176-198 29-51 (250)
475 2yz2_A Putative ABC transporte 87.3 0.3 1E-05 52.5 3.3 23 176-198 33-55 (266)
476 2qi9_C Vitamin B12 import ATP- 87.2 0.3 1E-05 51.8 3.2 23 176-198 26-48 (249)
477 1u0j_A DNA replication protein 87.1 0.49 1.7E-05 50.0 4.7 36 159-198 91-126 (267)
478 1ltq_A Polynucleotide kinase; 87.1 0.32 1.1E-05 53.8 3.6 22 177-198 3-24 (301)
479 1svm_A Large T antigen; AAA+ f 87.1 0.31 1E-05 55.1 3.4 25 174-198 167-191 (377)
480 1oix_A RAS-related protein RAB 87.0 0.29 1E-05 49.7 3.0 24 176-199 29-52 (191)
481 1cp2_A CP2, nitrogenase iron p 87.0 0.52 1.8E-05 51.0 5.1 40 177-218 2-41 (269)
482 4hlc_A DTMP kinase, thymidylat 86.8 0.92 3.2E-05 46.4 6.6 23 177-199 3-25 (205)
483 2nq2_C Hypothetical ABC transp 86.8 0.32 1.1E-05 51.8 3.1 23 176-198 31-53 (253)
484 1q3t_A Cytidylate kinase; nucl 86.7 0.35 1.2E-05 51.1 3.4 25 174-198 14-38 (236)
485 2ihy_A ABC transporter, ATP-bi 86.7 0.32 1.1E-05 52.5 3.2 23 176-198 47-69 (279)
486 2f9l_A RAB11B, member RAS onco 86.6 0.33 1.1E-05 49.7 3.1 23 177-199 6-28 (199)
487 1cr0_A DNA primase/helicase; R 86.5 0.32 1.1E-05 53.6 3.1 25 175-199 34-58 (296)
488 2v3c_C SRP54, signal recogniti 86.5 0.36 1.2E-05 55.8 3.6 25 175-199 98-122 (432)
489 3f9v_A Minichromosome maintena 86.4 0.23 8E-06 60.3 2.1 22 178-199 329-350 (595)
490 1w36_D RECD, exodeoxyribonucle 86.4 1.3 4.5E-05 54.0 8.8 22 177-198 165-186 (608)
491 2fz4_A DNA repair protein RAD2 86.4 1.6 5.5E-05 45.9 8.4 105 179-294 111-227 (237)
492 1nlf_A Regulatory protein REPA 86.3 0.31 1.1E-05 53.1 2.8 23 176-198 30-52 (279)
493 2afh_E Nitrogenase iron protei 86.1 0.61 2.1E-05 51.0 5.2 40 177-218 3-42 (289)
494 3v9p_A DTMP kinase, thymidylat 86.1 0.56 1.9E-05 48.7 4.5 25 175-199 24-48 (227)
495 3dzd_A Transcriptional regulat 86.0 0.79 2.7E-05 51.9 6.1 46 149-198 129-174 (368)
496 3lv8_A DTMP kinase, thymidylat 86.0 0.7 2.4E-05 48.3 5.2 36 176-212 27-62 (236)
497 2wjg_A FEOB, ferrous iron tran 85.9 0.46 1.6E-05 48.0 3.8 25 175-199 6-30 (188)
498 3nh6_A ATP-binding cassette SU 85.8 0.34 1.1E-05 53.0 2.8 24 175-198 79-102 (306)
499 2lkc_A Translation initiation 85.8 0.53 1.8E-05 46.9 4.1 26 174-199 6-31 (178)
500 2f7s_A C25KG, RAS-related prot 85.7 1.7 5.9E-05 44.9 8.2 23 177-199 26-48 (217)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-50 Score=519.55 Aligned_cols=666 Identities=17% Similarity=0.081 Sum_probs=392.7
Q ss_pred HhhhcCCCCcccEEEecCCcccccCccccCccccceeeccCcccc-ccch--hhhccccccEEEcCCccccccchhhh-c
Q 036079 539 VLQMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQ-ILPE--SINSLYNLHTILLENCHRLKKLCKDM-G 614 (1399)
Q Consensus 539 ~~~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~-~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i-~ 614 (1399)
+++.+.++++|+.++++.+.+..+|+.|+++++|++|+|++|.+. .+|. .++++++|++|++++|......|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 666677777777777777777666777777777777777777776 5666 77777777777777766555566554 6
Q ss_pred ccCcccEEEcCCCcccccCCcc---cccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhc
Q 036079 615 NLIKLHHLRNSNVDSLEEMPKG---FGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQL 691 (1399)
Q Consensus 615 ~L~~L~~L~l~~n~~~~~lp~~---~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 691 (1399)
++++|++|++++|.+....|.. ++++++|++|++.++...+.
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------------------- 193 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD----------------------------------- 193 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC-----------------------------------
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc-----------------------------------
Confidence 7777777777777744444443 55666666665543322100
Q ss_pred cCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCC-CC
Q 036079 692 NGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-SV 770 (1399)
Q Consensus 692 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l 770 (1399)
..+..+++|++|++++|.+...+..+ ..+++|++|++++|.+...+| .+
T Consensus 194 ----------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~l 243 (768)
T 3rgz_A 194 ----------------------------VDVSRCVNLEFLDVSSNNFSTGIPFL--GDCSALQHLDISGNKLSGDFSRAI 243 (768)
T ss_dssp ----------------------------CBCTTCTTCCEEECCSSCCCSCCCBC--TTCCSCCEEECCSSCCCSCHHHHT
T ss_pred ----------------------------CCcccCCcCCEEECcCCcCCCCCccc--ccCCCCCEEECcCCcCCCcccHHH
Confidence 01133556777777777666433333 346677777777766655544 56
Q ss_pred CCCCccceeeecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccC-CCCccceeeecCCcCcccC
Q 036079 771 GQLPLLKHLEISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVD-GFPKLRTLSLVCCSKLQGT 849 (1399)
Q Consensus 771 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~-~~~~L~~L~L~~c~~l~~~ 849 (1399)
+.+++|++|++++|...+.++.. .+++|++|++.++..... .+. .+. .+++|++|++++| .+++.
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~--------~l~~L~~L~L~~n~l~~~-ip~----~~~~~~~~L~~L~Ls~n-~l~~~ 309 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPL--------PLKSLQYLSLAENKFTGE-IPD----FLSGACDTLTGLDLSGN-HFYGA 309 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCC--------CCTTCCEEECCSSEEEES-CCC----CSCTTCTTCSEEECCSS-EEEEC
T ss_pred hcCCCCCEEECCCCcccCccCcc--------ccCCCCEEECcCCccCCc-cCH----HHHhhcCcCCEEECcCC-cCCCc
Confidence 66777777777766554433321 155666666655432211 111 111 2356666666653 44444
Q ss_pred CCC---CCCCcceEEecccC---ccccc-CCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeeccc
Q 036079 850 LPE---CLPLLEVLDIQCCG---QLLVT-IKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRE 922 (1399)
Q Consensus 850 ~p~---~l~~L~~L~l~~~~---~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 922 (1399)
+|. .+++|++|++++|. .+|.. +..+++|++|++++|... +..+..
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~---~~~p~~------------------------ 362 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS---GELPES------------------------ 362 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE---ECCCTT------------------------
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC---ccccHH------------------------
Confidence 443 24555555555552 22322 455555555555555411 111100
Q ss_pred ccccccccccccccCC-cCcEEEeecCCCCCCCccc-----cccccEEEEeecCCCCccchhhccCCCccEEEEccCCCc
Q 036079 923 LTYLWWSETRLLQDVR-SLNRLQISRCPQLLSLPEL-----QCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSL 996 (1399)
Q Consensus 923 L~~L~l~~n~l~~~l~-~L~~L~l~~~~~~~~~~~~-----~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l 996 (1399)
+..++ +|+.|++++|.....+|.. .++|++|++++|.+.+.+|..+..+++|+.|++++|...
T Consensus 363 -----------l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 363 -----------LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp -----------HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred -----------HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 23344 7888888888765555542 467999999999988889999999999999999998666
Q ss_pred cccC-CccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCC-CCCCCCCcEEEecCCCCCcccchh
Q 036079 997 ISFP-EAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE-VSLPSRLRTIEIEGCYALKCLPEA 1074 (1399)
Q Consensus 997 ~~~~-~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~ 1074 (1399)
..+| .+..+++|++|++++|...+.+|..+.. +++|++|++++|.....+|. +..+++|++|++++|.....+|..
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY--VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG--CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcC--CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 5666 4667889999999999877778877655 88999999999876655654 566789999999996655567766
Q ss_pred hhhcCCCCccEEeecCCCCcccccc-ccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceee
Q 036079 1075 WMENSSTSLESLNIYNCNSLTHIAR-IQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLE 1153 (1399)
Q Consensus 1075 ~~~~~l~~L~~L~L~~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 1153 (1399)
+ ..+++|++|++++|...+.+|. +..+++|+.|++++|.-...++.. ......+..+.
T Consensus 510 ~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-------------------~~~~~~~~~~~ 568 (768)
T 3rgz_A 510 I--GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA-------------------MFKQSGKIAAN 568 (768)
T ss_dssp G--GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG-------------------GGTTTTCBCCS
T ss_pred H--hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH-------------------Hhcccchhhhh
Confidence 5 5689999999999877766664 788899999999887644333311 00111111111
Q ss_pred ecccccccccccCC--Ccccc-CceEEeeccCCcccccccccccccccccccccccccccCCcccCCCCCceEeeccCCC
Q 036079 1154 VSYCLNLAFLSRNG--NLPQA-LKCLRVRFCSKLESFAESLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPN 1230 (1399)
Q Consensus 1154 l~~~~~l~~~~~~~--~~~~~-L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~ 1230 (1399)
+............. ..+.. -..+.+.+.. ......++.+..++++.+...+.+|..+..+++|+.|++++|..
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR----SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCC----GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred cccccccccccccccccccccccccccccccc----chhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 11111000000000 00000 0000110000 00112234455555555555566666677777777777777665
Q ss_pred ccccCCCCCCCCCccEEEecCCcCcccCccccCCCCCccEEEecCCCCCcccccccccccccCcccccccccCCCCcccC
Q 036079 1231 LESFPEGGLPYAKLTKLEILDCENLKALPNCMHNLTSLLCLEIGLCPRLICKPLFEWGLNRFTSLKRLEICEGCPDLVSS 1310 (1399)
Q Consensus 1231 l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~~ 1310 (1399)
.+.+|..+..+++|+.|++++|...+.+|..++++++|+.|+|++|....
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g------------------------------ 694 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG------------------------------ 694 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE------------------------------
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC------------------------------
Confidence 56677666667777777777766666677777777667766666654333
Q ss_pred CCCCCCccEEecCCCCCccccccCCCCCCCCCeeeccCCCCCCcCCCCCCccccccccccCCchHH----HHhhccCCCc
Q 036079 1311 PRFPASLTVLRISSMPNLICLSSIGENLTSLETLDLHFCPKLKYFPEQGLPKSLLQLIIHDCPLIE----KRCRKYKRKY 1386 (1399)
Q Consensus 1311 ~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~sL~~L~i~~c~~l~----~~~~~~~~~~ 1386 (1399)
.+|..+.++++|++|++++|+--..+|.++.+.++....+.|||.|- ..|.+..+++
T Consensus 695 -------------------~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~ 755 (768)
T 3rgz_A 695 -------------------RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADG 755 (768)
T ss_dssp -------------------CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC---
T ss_pred -------------------cCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCC
Confidence 33444445555555555555444555555445555555555554321 2689999999
Q ss_pred CCcccCCCceE
Q 036079 1387 WPMITHIPYVK 1397 (1399)
Q Consensus 1387 w~~~~~~~~~~ 1397 (1399)
|++|+|+|++.
T Consensus 756 ~~~~~~~~~~~ 766 (768)
T 3rgz_A 756 YAHHQRSHHHH 766 (768)
T ss_dssp -----------
T ss_pred CCCCCCccccC
Confidence 99999999874
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-46 Score=483.48 Aligned_cols=612 Identities=16% Similarity=0.093 Sum_probs=350.0
Q ss_pred HhhhcCCCCcccEEEecCCccc-ccCc--cccCccccceeeccCcccc-ccchhh-hccccccEEEcCCccccccchhh-
Q 036079 539 VLQMLLNLPRLRVFSLHGYCVS-KLPN--EIGNLKHLRFLNLSGTEIQ-ILPESI-NSLYNLHTILLENCHRLKKLCKD- 612 (1399)
Q Consensus 539 ~~~~~~~l~~Lr~L~L~~n~i~-~lp~--~~~~l~~L~~L~Ls~n~i~-~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~- 612 (1399)
++..|..+++|++|+|++|.+. .+|. .|+++++|++|+|++|.+. .+|..+ .++++|++|++++|......|..
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence 3467999999999999999998 4677 8999999999999999998 556665 89999999999998776777766
Q ss_pred --hcccCcccEEEcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhh
Q 036079 613 --MGNLIKLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQ 690 (1399)
Q Consensus 613 --i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~ 690 (1399)
+.++++|++|++++|.+....| ++.+++|++|++.+|...+... .
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~-------------------------------~ 218 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-------------------------------F 218 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCC-------------------------------B
T ss_pred hhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCc-------------------------------c
Confidence 7899999999999998544444 4888999999887665432100 0
Q ss_pred ccCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCC-CCCcccCcCCCcceeEEEeeCCCCCCCCC-
Q 036079 691 LNGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGT-KFPNWLGESSFLKLLFLRFEGCGKCTSLP- 768 (1399)
Q Consensus 691 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~l~- 768 (1399)
+..+++|+.|+++.+.... ..+..+..+++|+.|++++|.+. .+|.. .+++|++|++++|.+...+|
T Consensus 219 l~~l~~L~~L~Ls~n~l~~-------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~ 287 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSG-------DFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPD 287 (768)
T ss_dssp CTTCCSCCEEECCSSCCCS-------CHHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCC
T ss_pred cccCCCCCEEECcCCcCCC-------cccHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccCCccCH
Confidence 2233344444444332211 12334455555566665555544 22221 34555555555555443443
Q ss_pred CCCC-CCccceeeecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcc
Q 036079 769 SVGQ-LPLLKHLEISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQ 847 (1399)
Q Consensus 769 ~l~~-l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 847 (1399)
.+.. +++|++|++++|...+.++..+.. +++|++|++.++.....+.. ..+..+++|++|++++| .++
T Consensus 288 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~L~~n~l~~~ip~----~~l~~l~~L~~L~Ls~n-~l~ 356 (768)
T 3rgz_A 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGS------CSLLESLALSSNNFSGELPM----DTLLKMRGLKVLDLSFN-EFS 356 (768)
T ss_dssp CSCTTCTTCSEEECCSSEEEECCCGGGGG------CTTCCEEECCSSEEEEECCH----HHHTTCTTCCEEECCSS-EEE
T ss_pred HHHhhcCcCCEEECcCCcCCCccchHHhc------CCCccEEECCCCcccCcCCH----HHHhcCCCCCEEeCcCC-ccC
Confidence 3333 255555555555444443333322 44555555544332111100 01233444555555442 333
Q ss_pred cCCCCCCCCcceEEecccCcccccCCCCC-ccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeeccccccc
Q 036079 848 GTLPECLPLLEVLDIQCCGQLLVTIKYLP-ALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYL 926 (1399)
Q Consensus 848 ~~~p~~l~~L~~L~l~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L 926 (1399)
+.+| ..+..++ +|+.|++++|... +..+...
T Consensus 357 ~~~p------------------~~l~~l~~~L~~L~Ls~N~l~---~~~~~~~--------------------------- 388 (768)
T 3rgz_A 357 GELP------------------ESLTNLSASLLTLDLSSNNFS---GPILPNL--------------------------- 388 (768)
T ss_dssp ECCC------------------TTHHHHTTTCSEEECCSSEEE---EECCTTT---------------------------
T ss_pred cccc------------------HHHHhhhcCCcEEEccCCCcC---CCcChhh---------------------------
Confidence 3344 3444444 5666666665521 1111000
Q ss_pred ccccccccccCCcCcEEEeecCCCCCCCcc---ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC-Cc
Q 036079 927 WWSETRLLQDVRSLNRLQISRCPQLLSLPE---LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP-EA 1002 (1399)
Q Consensus 927 ~l~~n~l~~~l~~L~~L~l~~~~~~~~~~~---~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~ 1002 (1399)
....+++|+.|++++|.....+|. .+++|++|++++|.+.+.+|..+..+++|+.|++++|.....+| .+
T Consensus 389 ------~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 462 (768)
T 3rgz_A 389 ------CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462 (768)
T ss_dssp ------TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ------hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 001134455555555543333443 22455555666555555556566666666666666655444444 24
Q ss_pred cCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCC-CCCCCCCcEEEecCCCCCcccchhhhhcCCC
Q 036079 1003 ALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE-VSLPSRLRTIEIEGCYALKCLPEAWMENSST 1081 (1399)
Q Consensus 1003 ~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 1081 (1399)
..+++|++|++++|...+.+|..+.. +++|++|++++|.....+|. +..+++|++|++++|.....+|..+ ..++
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~ 538 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLSN--CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCR 538 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGG--CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCT
T ss_pred cCCCCceEEEecCCcccCcCCHHHhc--CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCC
Confidence 44556666666666544455554433 56666666666554434443 3445566666666654444555544 4566
Q ss_pred CccEEeecCCCCcccccc-ccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccc
Q 036079 1082 SLESLNIYNCNSLTHIAR-IQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNL 1160 (1399)
Q Consensus 1082 ~L~~L~L~~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 1160 (1399)
+|+.|++++|+....+|. +.....+..+.+.....+..+... ... .... ..-..+.+.+....
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~-----~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND--------GMK---KECH-----GAGNLLEFQGIRSE 602 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC--------SCC---TTCC-----SSEEEEECTTCCGG
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc--------ccc---cccc-----ccccccccccccch
Confidence 666666666655555543 222333333222221111111000 000 0000 00000111111000
Q ss_pred cccccCCCccccCceEEeeccCCcccccc-cccccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCC
Q 036079 1161 AFLSRNGNLPQALKCLRVRFCSKLESFAE-SLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGL 1239 (1399)
Q Consensus 1161 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 1239 (1399)
. ......+..+++..+..-+.++. ...+++|+.|++++|...+.+|..++++++|+.|+|++|...+.+|..+.
T Consensus 603 ~-----~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 677 (768)
T 3rgz_A 603 Q-----LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677 (768)
T ss_dssp G-----GGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred h-----hhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh
Confidence 0 00001122222222221122222 33568999999999998889999999999999999999988889999999
Q ss_pred CCCCccEEEecCCcCcccCccccCCCCCccEEEecCCCCCccccc
Q 036079 1240 PYAKLTKLEILDCENLKALPNCMHNLTSLLCLEIGLCPRLICKPL 1284 (1399)
Q Consensus 1240 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~ 1284 (1399)
.+++|+.|++++|...+.+|..++.+++|++|++++|+....+|.
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 999999999999988889999999999999999999877666763
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.2e-45 Score=447.99 Aligned_cols=317 Identities=17% Similarity=0.231 Sum_probs=257.2
Q ss_pred ccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc--CcchhccCCceEEEEeCCCC--CHHHHHHHH
Q 036079 152 YGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN--DDRVQRHFEIKAWTCVSEEF--DVFRISKSI 227 (1399)
Q Consensus 152 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 227 (1399)
|||++++++|.++|... .+...++|+|+||||+||||||+++|+ +.+++.+|++++||++++.. ++.+++.+|
T Consensus 131 ~GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 59999999999999754 234679999999999999999999997 66889999999999999885 789999999
Q ss_pred HHhccCCCC------CCcccHHHHHHHHHHHhcCC-eEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhhh
Q 036079 228 LNSVASDQC------TDKDDLNLLQEKLKKQLSGK-KFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVTV 300 (1399)
Q Consensus 228 l~~l~~~~~------~~~~~~~~~~~~l~~~l~~k-~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~ 300 (1399)
+.+++.... .+..+.+.+...+++.++++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 12234567889999999996 9999999999865433442 27999999999999988
Q ss_pred ccCCC-CceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhhh
Q 036079 301 NMGAD-PAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKDDPRDWEFVLNTD 379 (1399)
Q Consensus 301 ~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~ 379 (1399)
.++.. ..|++++|+.++||+||.+.+++.. .++..++++.+|+++|+|+||||+++|+.++.+ . ..|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 77533 5699999999999999999987643 246778899999999999999999999999765 2 2333444433
Q ss_pred hcccccccCCchhhhhccccCCchhhhhhhh-----------hccccCCCcccChHHHHHHHHHc--CCccccCCcccHH
Q 036079 380 IWDLQEHKCDIIPALGVSYHFLPPQLKQCFA-----------YCSLFPKDYEFHEEEIILLWIAE--GFLHQANSRRKLE 446 (1399)
Q Consensus 380 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~-----------~~a~fp~~~~i~~~~l~~~w~~~--g~i~~~~~~~~~~ 446 (1399)
.+.. ...++.+++.+||+.||+++|.||+ |||+||+++.|+ +++|+|+ ||+........++
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3322 2456899999999999999999999 999999999999 8999999 9998654455677
Q ss_pred HHHHHHHHHHHhcccccccCC-CCCeEEEcchhHHHHHHHhCCcee
Q 036079 447 DLGRDFVRELYSRSLFQQSSK-DASLFVMHDLINDLTQWAAGGRCF 491 (1399)
Q Consensus 447 ~~~~~~~~~L~~~~l~~~~~~-~~~~~~~H~lv~~~~~~~~~~~~~ 491 (1399)
++++ ||++|+++||++.... ....|+|||+||+||++++.+++.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8887 9999999999998653 346799999999999999887654
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-36 Score=389.59 Aligned_cols=430 Identities=17% Similarity=0.115 Sum_probs=235.6
Q ss_pred CcccEEEecCCcccccC-ccccCccccceeeccCcccccc-chhhhccccccEEEcCCccccccchh-hhcccCcccEEE
Q 036079 547 PRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKKLCK-DMGNLIKLHHLR 623 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 623 (1399)
+++++|+|++|.++.+| ..|+++++|++|+|++|.++.+ |..|+++++|++|++++| .+..+|. .|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 56777777777777664 3577777777777777777755 556777777777777775 4455554 477777777777
Q ss_pred cCCCcccccCC-cccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEe
Q 036079 624 NSNVDSLEEMP-KGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLL 702 (1399)
Q Consensus 624 l~~n~~~~~lp-~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 702 (1399)
+++|. +..+| ..|+++++|++|++.+|....
T Consensus 104 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~----------------------------------------------- 135 (680)
T 1ziw_A 104 LMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSS----------------------------------------------- 135 (680)
T ss_dssp CCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSC-----------------------------------------------
T ss_pred CCCCc-cCccChhHccccCCCCEEECCCCcccc-----------------------------------------------
Confidence 77776 44444 456777777777664443211
Q ss_pred eecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcc-cCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceee
Q 036079 703 EWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNW-LGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLE 780 (1399)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~ 780 (1399)
..+..+..+++|+.|++++|.+..++.. +.....++|+.|++++|.+....| .+..+++|+.|+
T Consensus 136 --------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 136 --------------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201 (680)
T ss_dssp --------------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred --------------cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhh
Confidence 0112344566777888888877766543 211234677777777776655555 466667777777
Q ss_pred ecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCCCC-----C
Q 036079 781 ISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPECL-----P 855 (1399)
Q Consensus 781 Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~~l-----~ 855 (1399)
++++.........+.. ....++|+.|++++| .+++..|..+ +
T Consensus 202 l~~~~l~~~~~~~~~~--------------------------------~l~~~~L~~L~L~~n-~l~~~~~~~~~~l~~~ 248 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCL--------------------------------ELANTSIRNLSLSNS-QLSTTSNTTFLGLKWT 248 (680)
T ss_dssp CTTCCCHHHHHHHHHH--------------------------------HHTTSCCCEEECTTS-CCCEECTTTTGGGGGS
T ss_pred ccccccChhhHHHHHH--------------------------------HhhhccccEEEccCC-cccccChhHhhccCcC
Confidence 7665432111100000 001245555555552 4443333322 2
Q ss_pred CcceEEecccCc---ccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeeccccccccccccc
Q 036079 856 LLEVLDIQCCGQ---LLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYLWWSETR 932 (1399)
Q Consensus 856 ~L~~L~l~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L~l~~n~ 932 (1399)
+|++|++++|.. .+..+..+++|++|++++|.........
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------------------- 291 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS------------------------------------- 291 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT-------------------------------------
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh-------------------------------------
Confidence 355555555532 1244566677777777776633221111
Q ss_pred ccccCCcCcEEEeecCCCCC-----CCcc-------ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCC-cccc
Q 036079 933 LLQDVRSLNRLQISRCPQLL-----SLPE-------LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTS-LISF 999 (1399)
Q Consensus 933 l~~~l~~L~~L~l~~~~~~~-----~~~~-------~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~ 999 (1399)
+..+++|+.|++++|.... .+|. .+++|++|++++|.+.+..+..+..+++|++|++++|.. ...+
T Consensus 292 -~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l 370 (680)
T 1ziw_A 292 -LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370 (680)
T ss_dssp -TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE
T ss_pred -hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc
Confidence 2334444444444432111 1111 235677777777776666666677777788887777642 2222
Q ss_pred CCc--c--CCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccC--CCCCCCCCcEEEecCCCCCcccch
Q 036079 1000 PEA--A--LPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFP--EVSLPSRLRTIEIEGCYALKCLPE 1073 (1399)
Q Consensus 1000 ~~~--~--~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~--~~~~~~~L~~L~l~~c~~l~~~~~ 1073 (1399)
+.. . ..++|+.|++++|......|..+.. +++|+.|++++|.....++ .+..+++|++|++++| .+..++.
T Consensus 371 ~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 447 (680)
T 1ziw_A 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSW--LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTR 447 (680)
T ss_dssp CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC-SEEECCT
T ss_pred chhhhcccccCcCceEECCCCCCCeEChhhhhC--CCCCCEEeCCCCcCccccCcccccCcccccEEecCCC-CcceeCh
Confidence 221 1 1246777777777644333433332 6677777777765433443 2344566666666664 3444433
Q ss_pred hhhhcCCCCccEEeecCCCCc--cccc-cccccCccceeeeccc
Q 036079 1074 AWMENSSTSLESLNIYNCNSL--THIA-RIQLAPSLKRLIINSC 1114 (1399)
Q Consensus 1074 ~~~~~~l~~L~~L~L~~c~~l--~~~~-~~~~~~~L~~L~l~~c 1114 (1399)
..+ ..+++|+.|++++|... ...| .+..+++|+.|++++|
T Consensus 448 ~~~-~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N 490 (680)
T 1ziw_A 448 NSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490 (680)
T ss_dssp TTT-TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS
T ss_pred hhh-hcCcccccchhccccccccccCCcccccCCCCCEEECCCC
Confidence 332 34566666666665321 1222 2344455555555543
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-35 Score=378.60 Aligned_cols=292 Identities=17% Similarity=0.115 Sum_probs=181.2
Q ss_pred ccEEEecCCcccccCccccCccccceeeccCccccccch-hhhccccccEEEcCCccccccchhhhcccCcccEEEcCCC
Q 036079 549 LRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPE-SINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNV 627 (1399)
Q Consensus 549 Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n 627 (1399)
-++++++++.++.+|..+. ++|++|+|++|.|+.+|. .|+++++|++|++++|......|..|+++++|++|++++|
T Consensus 6 ~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CCeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 3689999999999998776 799999999999998865 6999999999999997666666788999999999999999
Q ss_pred cccccCCc-ccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEeeecC
Q 036079 628 DSLEEMPK-GFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLEWST 706 (1399)
Q Consensus 628 ~~~~~lp~-~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 706 (1399)
. +..+|. .|+++++|++|++.
T Consensus 84 ~-l~~l~~~~~~~l~~L~~L~L~--------------------------------------------------------- 105 (680)
T 1ziw_A 84 E-LSQLSDKTFAFCTNLTELHLM--------------------------------------------------------- 105 (680)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECC---------------------------------------------------------
T ss_pred c-cCccChhhhccCCCCCEEECC---------------------------------------------------------
Confidence 8 666665 36666666555543
Q ss_pred CCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCc-ccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceeeeccc
Q 036079 707 DISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPN-WLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLEISRM 784 (1399)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~Ls~~ 784 (1399)
+|.+..+|. .+ ..+++|++|++++|......+ .++++++|++|++++|
T Consensus 106 ----------------------------~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 106 ----------------------------SNSIQKIKNNPF--VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp ----------------------------SSCCCCCCSCTT--TTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred ----------------------------CCccCccChhHc--cccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 333333332 22 234556666666655544444 4667777777777776
Q ss_pred ccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCCCCCCcceEEecc
Q 036079 785 DRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPECLPLLEVLDIQC 864 (1399)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~~l~~L~~L~l~~ 864 (1399)
......+..+. ...+++|++|++++| .+++..|
T Consensus 156 ~l~~~~~~~~~---------------------------------~~~~~~L~~L~L~~n-~l~~~~~------------- 188 (680)
T 1ziw_A 156 KIQALKSEELD---------------------------------IFANSSLKKLELSSN-QIKEFSP------------- 188 (680)
T ss_dssp CCCCBCHHHHG---------------------------------GGTTCEESEEECTTC-CCCCBCT-------------
T ss_pred cccccCHHHhh---------------------------------ccccccccEEECCCC-cccccCh-------------
Confidence 43222111110 113467777777774 5553333
Q ss_pred cCcccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeecccccccccccccccccCCcCcEEE
Q 036079 865 CGQLLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYLWWSETRLLQDVRSLNRLQ 944 (1399)
Q Consensus 865 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~l~~L~~L~ 944 (1399)
..+..+++|+.|++.++.... ... .. -...-..++|+.|+
T Consensus 189 -----~~~~~l~~L~~L~l~~~~l~~---~~~---------------------------~~-----~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 189 -----GCFHAIGRLFGLFLNNVQLGP---SLT---------------------------EK-----LCLELANTSIRNLS 228 (680)
T ss_dssp -----TGGGGSSEECEEECTTCCCHH---HHH---------------------------HH-----HHHHHTTSCCCEEE
T ss_pred -----hhhhhhhhhhhhhccccccCh---hhH---------------------------HH-----HHHHhhhccccEEE
Confidence 234455666666666555110 000 00 00001235677777
Q ss_pred eecCCCCCCCcccc-----ccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC-CccCCCcccEEEccCCC
Q 036079 945 ISRCPQLLSLPELQ-----CRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP-EAALPSRLRTIDIEGCN 1017 (1399)
Q Consensus 945 l~~~~~~~~~~~~~-----~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~Ls~~~ 1017 (1399)
+++|......|..+ ++|++|++++|.+.+..|..+..+++|++|++++|......+ .+..+++|++|++++|.
T Consensus 229 L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp CTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB
T ss_pred ccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchh
Confidence 77776444333322 237777777777666556666667777777777654443333 34556666666666553
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.8e-37 Score=374.14 Aligned_cols=286 Identities=20% Similarity=0.220 Sum_probs=228.5
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCc-eEEEEeCCCCCHHHHHHHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEI-KAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il 228 (1399)
..|||++++++|.++|... +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++..+...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3599999999999999752 24689999999999999999999987778899986 89999999999888888877
Q ss_pred HhccCCC------CC----CcccHHHHHHHHHHHh---cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC
Q 036079 229 NSVASDQ------CT----DKDDLNLLQEKLKKQL---SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN 295 (1399)
Q Consensus 229 ~~l~~~~------~~----~~~~~~~~~~~l~~~l---~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~ 295 (1399)
+.++... .. ...+.+++.+.+++.+ ++||+||||||||+. ..|+.+ .+||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f-------~pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF-------NLSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH-------HSSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh-------CCCeEEEEeccC
Confidence 7543211 00 1224456667777766 689999999999984 556653 268999999999
Q ss_pred hhhhhccCCCCceecC------CCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCCC-C
Q 036079 296 LGVTVNMGADPAYQLK------ELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKD-D 368 (1399)
Q Consensus 296 ~~~~~~~~~~~~~~l~------~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~-~ 368 (1399)
+.++..+.....++++ +|+.+||++||.+.. +.. .+++..+| |+|+||||+++|+.|+.+. .
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9887544333356666 999999999999884 322 12233333 9999999999999999874 5
Q ss_pred hhHHHHHHhhhhcccccccCCchhhhhccccCCchhh-hhhhhhccccCCCcccChHHHHHHHHHcCCccccCCcccHHH
Q 036079 369 PRDWEFVLNTDIWDLQEHKCDIIPALGVSYHFLPPQL-KQCFAYCSLFPKDYEFHEEEIILLWIAEGFLHQANSRRKLED 447 (1399)
Q Consensus 369 ~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~~f~~~a~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~~ 447 (1399)
.+.|+.. ....+.++|.+||+.||++. |+||++||+||+++.|+++.++.+|+++| ++
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------ee 402 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KS 402 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HH
Confidence 6778753 12468899999999999999 99999999999999999999999998876 13
Q ss_pred HHHHHHHHHHhcccccccCCCCCeEEEcchhHHHH
Q 036079 448 LGRDFVRELYSRSLFQQSSKDASLFVMHDLINDLT 482 (1399)
Q Consensus 448 ~~~~~~~~L~~~~l~~~~~~~~~~~~~H~lv~~~~ 482 (1399)
.++.++++|+++|||+.. ....+|+|||++++++
T Consensus 403 dAe~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEe-CCCCEEEehHHHHHHh
Confidence 578899999999999985 2456899999999865
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.9e-35 Score=369.43 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=92.1
Q ss_pred ccEEEE-eecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEEEccCCCccccCccccccCccCCcceEEe
Q 036079 961 LRFLEL-SYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKI 1039 (1399)
Q Consensus 961 L~~L~l-s~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~l 1039 (1399)
++.+++ ..+.+.+.+|. +..+++|+.|++++|. +..++.+..+++|++|++++|.. +.+|. + .+++|+.|++
T Consensus 263 l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~---~l~~L~~L~l 335 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L---DLPFLKSLTL 335 (606)
T ss_dssp EEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSCCC-C---CCSSCCEEEE
T ss_pred Hhheeccccccccccccc-cccCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-ccccc-C---CCCccceeec
Confidence 445555 34444555555 7778888888888854 45566666777888888888874 77773 3 2788888888
Q ss_pred cCCCCccccCCCCCCCCCcEEEecCCCCCccc---chhhhhcCCCCccEEeecCCCCccccc-cccccCccceeeeccc
Q 036079 1040 RYCKSLVSFPEVSLPSRLRTIEIEGCYALKCL---PEAWMENSSTSLESLNIYNCNSLTHIA-RIQLAPSLKRLIINSC 1114 (1399)
Q Consensus 1040 s~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~---~~~~~~~~l~~L~~L~L~~c~~l~~~~-~~~~~~~L~~L~l~~c 1114 (1399)
++|..+..+ ....+++|++|++++| .++.+ +..+ ..+++|++|++++|. ++.++ .+..+++|++|++++|
T Consensus 336 ~~n~~~~~~-~~~~l~~L~~L~ls~n-~l~~~~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n 409 (606)
T 3vq2_A 336 TMNKGSISF-KKVALPSLSYLDLSRN-ALSFSGCCSYSD--LGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHS 409 (606)
T ss_dssp ESCSSCEEC-CCCCCTTCCEEECCSS-CEEEEEECCHHH--HCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTS
T ss_pred cCCcCccch-hhccCCCCCEEECcCC-ccCCCcchhhhh--ccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCC
Confidence 887655555 3456678888888884 44444 3333 467788888888765 33333 3455555555555554
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.8e-35 Score=368.84 Aligned_cols=291 Identities=16% Similarity=0.080 Sum_probs=133.9
Q ss_pred cCcEEEeecCCCCCCCcc---ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC-CccCCCcccEEEcc
Q 036079 939 SLNRLQISRCPQLLSLPE---LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP-EAALPSRLRTIDIE 1014 (1399)
Q Consensus 939 ~L~~L~l~~~~~~~~~~~---~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~Ls 1014 (1399)
+|+.|++++|......+. .+++|++|++++|.+. .+|..+..+++|++|++++|......+ .+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 455555555543222221 2245555555555432 444455555555555555543322222 23444555555555
Q ss_pred CCCccccCccccccCccCCcceEEecCCCCcccc--C-CCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCC
Q 036079 1015 GCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSF--P-EVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNC 1091 (1399)
Q Consensus 1015 ~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~--~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c 1091 (1399)
+|.....+|...+. .+++|++|++++|...... + .+..+++|++|++++| .++.++...+ ..+++|++|++++|
T Consensus 334 ~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 334 GNTKRLELGTGCLE-NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAF-KECPQLELLDLAFT 410 (606)
T ss_dssp SCSSCCBCCSSTTT-TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTT-TTCTTCSEEECTTC
T ss_pred CCCcccccchhhhh-ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHh-cCCccCCeEECCCC
Confidence 55433344333221 1455555555554422211 1 2333445555555552 2333222211 23444555555544
Q ss_pred CCcccccc--ccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCc
Q 036079 1092 NSLTHIAR--IQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNL 1169 (1399)
Q Consensus 1092 ~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 1169 (1399)
......+. +..+++|++|++ ++|......+.....
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l-------------------------------------------~~n~l~~~~~~~~~~ 447 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNL-------------------------------------------SHSLLDISSEQLFDG 447 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEEC-------------------------------------------TTCCCBTTCTTTTTT
T ss_pred cCCCcccchhhhCcccCCEEEC-------------------------------------------CCCccCCcCHHHHhC
Confidence 32222111 333344444444 443322222221222
Q ss_pred cccCceEEeeccCCccc-c---cccccccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCcc
Q 036079 1170 PQALKCLRVRFCSKLES-F---AESLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLT 1245 (1399)
Q Consensus 1170 ~~~L~~L~l~~c~~l~~-~---~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 1245 (1399)
.++|+.|++++|..... + .....+++|++|++++|...+..|..+..+++|++|++++|......|..+..+++|
T Consensus 448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L- 526 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526 (606)
T ss_dssp CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-
Confidence 23455555555443221 1 112344666666666665544455566666666666666665444445555556666
Q ss_pred EEEecCCcCcccCccccCCCCCccEEEecCCC
Q 036079 1246 KLEILDCENLKALPNCMHNLTSLLCLEIGLCP 1277 (1399)
Q Consensus 1246 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 1277 (1399)
.|++++|......|..+..+++|+.|++++|+
T Consensus 527 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 527 YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 66666665444444455666666666666654
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-35 Score=408.92 Aligned_cols=314 Identities=21% Similarity=0.322 Sum_probs=249.0
Q ss_pred ccccCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcch-hccC-CceEEEEeCCCCC--
Q 036079 144 SLVNEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV-QRHF-EIKAWTCVSEEFD-- 219 (1399)
Q Consensus 144 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~-- 219 (1399)
.+.++..||||++++++|.++|... ++..++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc----cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchH
Confidence 3445677999999999999999753 346799999999999999999999997543 4445 5677999988543
Q ss_pred HHHHHHHHHHhccCCCC---CCcccHHHHHHHHHHHhcCC--eEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecC
Q 036079 220 VFRISKSILNSVASDQC---TDKDDLNLLQEKLKKQLSGK--KFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTR 294 (1399)
Q Consensus 220 ~~~~~~~il~~l~~~~~---~~~~~~~~~~~~l~~~l~~k--~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr 294 (1399)
....+..++..+..... ....+.+++.+.++..+.++ ||||||||||+. ..|..+ ++|++||||||
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR 265 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEES
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcC
Confidence 44556677777765432 23467788889999999877 999999999976 334432 57899999999
Q ss_pred Chhhhhc-cCCCCceecCC-CChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHH
Q 036079 295 NLGVTVN-MGADPAYQLKE-LSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKDDPRDW 372 (1399)
Q Consensus 295 ~~~~~~~-~~~~~~~~l~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w 372 (1399)
++.++.. .+....+.+++ |+++||+++|...++.. .+..++.+++|+++|+|+||||+++|++|+.++ ..|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~ 338 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH
T ss_pred CHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHH
Confidence 9998754 44456789996 99999999999988432 233456789999999999999999999998765 457
Q ss_pred HHHHhhhhccc----c----cccCCchhhhhccccCCchhhhhhhhhccccCCCcccChHHHHHHHHHcCCccccCCccc
Q 036079 373 EFVLNTDIWDL----Q----EHKCDIIPALGVSYHFLPPQLKQCFAYCSLFPKDYEFHEEEIILLWIAEGFLHQANSRRK 444 (1399)
Q Consensus 373 ~~~l~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~~ 444 (1399)
+..++...... . .....+.+++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------- 407 (1249)
T 3sfz_A 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------- 407 (1249)
T ss_dssp HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------
Confidence 77665432211 1 1113588999999999999999999999999999999999999999543
Q ss_pred HHHHHHHHHHHHHhcccccccCCC-CCeEEEcchhHHHHHHHhCCc
Q 036079 445 LEDLGRDFVRELYSRSLFQQSSKD-ASLFVMHDLINDLTQWAAGGR 489 (1399)
Q Consensus 445 ~~~~~~~~~~~L~~~~l~~~~~~~-~~~~~~H~lv~~~~~~~~~~~ 489 (1399)
++.+++++++|++++|++....+ ...|+||+++|+|++..+.++
T Consensus 408 -~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred -HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 46789999999999999876433 236999999999999987765
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.3e-34 Score=361.49 Aligned_cols=244 Identities=17% Similarity=0.150 Sum_probs=142.3
Q ss_pred ccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEEEccCCCcccc--CccccccCccCCcce
Q 036079 959 CRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCNALKS--LPEAWMHNSYSSLQS 1036 (1399)
Q Consensus 959 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~~l~~--~~~~~~~~~l~~L~~ 1036 (1399)
++|++|++++|.+ +.+|. + .+++|+.|++++|...... ....+++|++|++++|..... +|..+.. +++|++
T Consensus 307 ~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~--~~~L~~ 380 (606)
T 3vq2_A 307 FKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLG--TNSLRH 380 (606)
T ss_dssp CCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHC--CSCCCE
T ss_pred ccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhcc--CCcccE
Confidence 4566666666665 55663 4 7777888888777555444 345677788888887763222 1444333 777788
Q ss_pred EEecCCCCccccC-CCCCCCCCcEEEecCCCCCcccch-hhhhcCCCCccEEeecCCCCcccccc-ccccCccceeeecc
Q 036079 1037 LKIRYCKSLVSFP-EVSLPSRLRTIEIEGCYALKCLPE-AWMENSSTSLESLNIYNCNSLTHIAR-IQLAPSLKRLIINS 1113 (1399)
Q Consensus 1037 L~ls~~~~l~~~~-~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~L~~c~~l~~~~~-~~~~~~L~~L~l~~ 1113 (1399)
|++++|. +..+| .+..+++|+.|++++| .+...+. ..+ ..+++|++|++++|......+. +..+++|++|++++
T Consensus 381 L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 381 LDLSFNG-AIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAF-LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp EECCSCS-EEEECCCCTTCTTCCEEECTTS-EEESTTTTTTT-TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred eECCCCc-cccchhhccCCCCCCeeECCCC-ccCCccChhhh-hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 8877765 44443 3455667777777774 3333332 222 4566777777776643332221 23333333333333
Q ss_pred ccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCccccCceEEeeccCCccc-ccc-cc
Q 036079 1114 CHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQALKCLRVRFCSKLES-FAE-SL 1191 (1399)
Q Consensus 1114 c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~-~~ 1191 (1399)
| ..... ++. ..
T Consensus 458 n-------------------------------------------------------------------~l~~~~~~~~~~ 470 (606)
T 3vq2_A 458 N-------------------------------------------------------------------SFKDNTLSNVFA 470 (606)
T ss_dssp C-------------------------------------------------------------------EEGGGEECSCCT
T ss_pred C-------------------------------------------------------------------cCCCcchHHhhc
Confidence 2 11110 111 12
Q ss_pred cccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcCcccCccccCCCC-CccE
Q 036079 1192 DNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCENLKALPNCMHNLT-SLLC 1270 (1399)
Q Consensus 1192 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~ 1270 (1399)
.+++|++|++++|...+..|..+..+++|++|++++|......|..+..+++|+.|++++|. ++.+|..+..++ +|+.
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAF 549 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCE
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcE
Confidence 34556666666665555556667777777777777776545456666677777777777765 456777777775 4777
Q ss_pred EEecCCCCC
Q 036079 1271 LEIGLCPRL 1279 (1399)
Q Consensus 1271 L~l~~c~~l 1279 (1399)
|++++|+-.
T Consensus 550 l~l~~N~~~ 558 (606)
T 3vq2_A 550 FNLTNNSVA 558 (606)
T ss_dssp EECCSCCCC
T ss_pred EEccCCCcc
Confidence 777776543
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.1e-34 Score=361.75 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=81.1
Q ss_pred cccEEEecCCccccc-CccccCccccceeeccCcccccc-chhhhccccccEEEcCCccccccchhhhcccCcccEEEcC
Q 036079 548 RLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNS 625 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 625 (1399)
.+++|+|++|.++.+ |..|+++++|++|+|++|.+..+ |..|+++++|++|++++|......|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 678888888888877 67788888888888888888855 6778888888888888876555567778888888888888
Q ss_pred CCcccccC-CcccccccccCccceEEec
Q 036079 626 NVDSLEEM-PKGFGKLTCLLTLCTFVVG 652 (1399)
Q Consensus 626 ~n~~~~~l-p~~~~~L~~L~~L~l~~~~ 652 (1399)
+|. +..+ |..++++++|++|++.+|.
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L~L~~n~ 140 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESLYLGSNH 140 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEEECCSSC
T ss_pred ccC-cccCCcchhccCCcccEEECCCCc
Confidence 887 4444 4567777777777765543
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=359.58 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=66.5
Q ss_pred ccccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcCcccCccccCCCCCccE
Q 036079 1191 LDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCENLKALPNCMHNLTSLLC 1270 (1399)
Q Consensus 1191 ~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 1270 (1399)
..+++|++|++++|...+..|..+..+++|++|+|++|. +..+|..... ++|+.|++++|...+..|..+ .+|+.
T Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~---~~L~~ 551 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHNDLP-ANLEILDISRNQLLAPNPDVF---VSLSV 551 (844)
T ss_dssp SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC-CSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC---SSCCE
T ss_pred cCcccccEEECCCCcccccChhHccchhhhheeECCCCC-CCccChhhhh-ccccEEECCCCcCCCCChhHh---CCcCE
Confidence 355889999999986666666778999999999999975 7778876665 899999999987666555544 57899
Q ss_pred EEecCCCCC
Q 036079 1271 LEIGLCPRL 1279 (1399)
Q Consensus 1271 L~l~~c~~l 1279 (1399)
|++++++-.
T Consensus 552 l~l~~Np~~ 560 (844)
T 3j0a_A 552 LDITHNKFI 560 (844)
T ss_dssp EEEEEECCC
T ss_pred EEecCCCcc
Confidence 999987644
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=348.29 Aligned_cols=517 Identities=15% Similarity=0.085 Sum_probs=261.5
Q ss_pred CCcccEEEecCCccccc-CccccCccccceeeccCcc-cccc-chhhhccccccEEEcCCccccccchhhhcccCcccEE
Q 036079 546 LPRLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTE-IQIL-PESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHL 622 (1399)
Q Consensus 546 l~~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~-i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 622 (1399)
.++|++|||++|.++.+ |..|.++++|++|+|++|. +..+ |..|+++++|++|+|++|......|..|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 46788888888888876 6788888888888888884 4466 6778888888888888876555557888888888888
Q ss_pred EcCCCcccccCCcc--cccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCce
Q 036079 623 RNSNVDSLEEMPKG--FGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKAL 700 (1399)
Q Consensus 623 ~l~~n~~~~~lp~~--~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 700 (1399)
++++|.+...+|.. ++++++|++|++.+|...+...
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~------------------------------------------ 140 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL------------------------------------------ 140 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC------------------------------------------
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCccccccc------------------------------------------
Confidence 88888854545654 7888888888877665432100
Q ss_pred EeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCC-CcccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCc---
Q 036079 701 LLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKF-PNWLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPL--- 775 (1399)
Q Consensus 701 ~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~--- 775 (1399)
...+..+++|+.|++++|.+..+ |..+.....++|+.|++++|......| .++.+++
T Consensus 141 ------------------~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 141 ------------------HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp ------------------CGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred ------------------chhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence 01233455666666666666543 333321111567777777766555444 3444443
Q ss_pred ---cceeeecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCC
Q 036079 776 ---LKHLEISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPE 852 (1399)
Q Consensus 776 ---L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~ 852 (1399)
|+.|++++|......+..+... ....+++.|.+.+......+ .+.++.... . ..+.+ -
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~~---l~~~~l~~L~l~~~~~~~~~----------~~~~l~~~~--~-~~f~~---l 263 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSNA---ISKSQAFSLILAHHIMGAGF----------GFHNIKDPD--Q-NTFAG---L 263 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGGT---SCSCCBSEEECCSSCCBCSS----------SCSSSTTGG--G-TTTTT---T
T ss_pred cCceeEEecCCCcCchhHHHHHHhh---cCcccccceecccccccccc----------cccccCCCC--h-hhhhc---c
Confidence 7777777775444433333221 01234444444321100000 000000000 0 00000 0
Q ss_pred CCCCcceEEecccCc---ccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeecccccccccc
Q 036079 853 CLPLLEVLDIQCCGQ---LLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYLWWS 929 (1399)
Q Consensus 853 ~l~~L~~L~l~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L~l~ 929 (1399)
..++|+.|++++|.. .+..+..+++|+.|++++|.+..+....
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~---------------------------------- 309 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA---------------------------------- 309 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT----------------------------------
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH----------------------------------
Confidence 013344444443321 1233445555555555555522211110
Q ss_pred cccccccCCcCcEEEeecCCCCCCCccccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC--CccCCCc
Q 036079 930 ETRLLQDVRSLNRLQISRCPQLLSLPELQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP--EAALPSR 1007 (1399)
Q Consensus 930 ~n~l~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~ 1007 (1399)
+..+++|+ +|++++|.+.+..|..+..+++|+.|++++|. +..++ .+..+++
T Consensus 310 ----~~~l~~L~---------------------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 310 ----FYGLDNLQ---------------------VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEK 363 (844)
T ss_dssp ----TTTCSSCC---------------------EEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCC
T ss_pred ----hcCCCCCC---------------------EEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCC
Confidence 22333444 44444444434444445555555555555542 22222 1334455
Q ss_pred ccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEe
Q 036079 1008 LRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLN 1087 (1399)
Q Consensus 1008 L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 1087 (1399)
|++|++++|. ++.++. +++|+.|++++|+ +..+|.. ..+++.|++++ +.++.++.......+++|+.|+
T Consensus 364 L~~L~Ls~N~-l~~i~~------~~~L~~L~l~~N~-l~~l~~~--~~~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 364 LQTLDLRDNA-LTTIHF------IPSIPDIFLSGNK-LVTLPKI--NLTANLIHLSE-NRLENLDILYFLLRVPHLQILI 432 (844)
T ss_dssp CCEEEEETCC-SCCCSS------CCSCSEEEEESCC-CCCCCCC--CTTCCEEECCS-CCCCSSTTHHHHTTCTTCCEEE
T ss_pred CCEEECCCCC-CCcccC------CCCcchhccCCCC-ccccccc--ccccceeeccc-CccccCchhhhhhcCCccceee
Confidence 5555555554 332221 4455555555543 3333332 34555666665 3455544433334556666666
Q ss_pred ecCCCCcccccc--ccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeeccccccccccc
Q 036079 1088 IYNCNSLTHIAR--IQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSR 1165 (1399)
Q Consensus 1088 L~~c~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 1165 (1399)
+++|......+. +..+++|+.|+++++.- ...+.. ...+.....+++|+.|++++|......+.
T Consensus 433 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l-~~~~~~-------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 498 (844)
T 3j0a_A 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENML-QLAWET-------------ELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498 (844)
T ss_dssp EESCCCCCCCSSSSSCSCTTCCBCEEESCCC-SSSCCS-------------CCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred CCCCcccccccccccccCCccccccCCCCcc-cccccc-------------ccchhhhcCcccccEEECCCCcccccChh
Confidence 666543221111 23355666666665421 110000 00011112235566666666643333333
Q ss_pred CCCccccCceEEeeccCCcccccccccccccccccccccccccccCCcccCCCCCceEeeccCCC
Q 036079 1166 NGNLPQALKCLRVRFCSKLESFAESLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPN 1230 (1399)
Q Consensus 1166 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~ 1230 (1399)
.....++|+.|++++|. ++.++.....++|+.|++++|...+..|..+ ++|+.|++++|+.
T Consensus 499 ~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 499 VFSHLTALRGLSLNSNR-LTVLSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKF 559 (844)
T ss_dssp SSSSCCSCSEEEEESCC-CSSCCCCCCCSCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECC
T ss_pred HccchhhhheeECCCCC-CCccChhhhhccccEEECCCCcCCCCChhHh---CCcCEEEecCCCc
Confidence 33334566666666663 3333332222666666666665555545433 4666667766653
No 14
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=345.90 Aligned_cols=307 Identities=23% Similarity=0.349 Sum_probs=234.6
Q ss_pred ccCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcch-hccCC-ceEEEEeCCCCCHHHH
Q 036079 146 VNEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV-QRHFE-IKAWTCVSEEFDVFRI 223 (1399)
Q Consensus 146 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~f~-~~~wv~~~~~~~~~~~ 223 (1399)
..+..||||+.+++++.++|... .++.++|+|+||||+||||||.+++++.++ +.+|+ .++|++++.. +...+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHH
Confidence 34567999999999999999642 245789999999999999999999997665 78894 7999999765 33333
Q ss_pred HHH---HHHhccCCC---CCCcccHHHHHHHHHHHhcC--CeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC
Q 036079 224 SKS---ILNSVASDQ---CTDKDDLNLLQEKLKKQLSG--KKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN 295 (1399)
Q Consensus 224 ~~~---il~~l~~~~---~~~~~~~~~~~~~l~~~l~~--k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~ 295 (1399)
+.. ++..++... .....+.+.....+...+.+ +|+||||||+|+.. .++. + +.|++||||||+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--~l~~----l---~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--VLKA----F---DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--HHHT----T---CSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--HHHH----h---cCCCeEEEECCC
Confidence 333 344444211 12345667777888888775 79999999998753 2332 2 568999999999
Q ss_pred hhhhhccCCCCceec---CCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHH
Q 036079 296 LGVTVNMGADPAYQL---KELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKDDPRDW 372 (1399)
Q Consensus 296 ~~~~~~~~~~~~~~l---~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w 372 (1399)
+.++..+. ...+++ ++|+.+|++++|...++.. .....+.+.+|+++|+|+|+||.++|+.++..+ ..|
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w 338 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCH
T ss_pred cHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhH
Confidence 98876543 233444 5899999999999988542 122346789999999999999999999998764 368
Q ss_pred HHHHhhhhccc--------ccccCCchhhhhccccCCchhhhhhhhhccccCCCcccChHHHHHHHHHcCCccccCCccc
Q 036079 373 EFVLNTDIWDL--------QEHKCDIIPALGVSYHFLPPQLKQCFAYCSLFPKDYEFHEEEIILLWIAEGFLHQANSRRK 444 (1399)
Q Consensus 373 ~~~l~~~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~~ 444 (1399)
...++...... ......+..++..||+.||++.|.||++||+||+|+.|+.+.+..+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------- 407 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----------- 407 (591)
T ss_dssp HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------
Confidence 77665432211 11123578899999999999999999999999999999999999999532
Q ss_pred HHHHHHHHHHHHHhcccccccCC-CCCeEEEcchhHHHHHHHh
Q 036079 445 LEDLGRDFVRELYSRSLFQQSSK-DASLFVMHDLINDLTQWAA 486 (1399)
Q Consensus 445 ~~~~~~~~~~~L~~~~l~~~~~~-~~~~~~~H~lv~~~~~~~~ 486 (1399)
.+.+.+++++|+++|||+.... ....|+||+++|++++...
T Consensus 408 -~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 -TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 3457889999999999986542 2357999999999999874
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=1.1e-31 Score=335.36 Aligned_cols=450 Identities=17% Similarity=0.169 Sum_probs=244.7
Q ss_pred CcccEEEecCCccccc-CccccCccccceeeccCccccccc-hhhhccccccEEEcCCccccccchhhhcccCcccEEEc
Q 036079 547 PRLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQILP-ESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRN 624 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 624 (1399)
++|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+| ..|+++++|++|++++|......|..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 6899999999999987 678999999999999999999775 67999999999999997554444556999999999999
Q ss_pred CCCcccc-cCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEee
Q 036079 625 SNVDSLE-EMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLE 703 (1399)
Q Consensus 625 ~~n~~~~-~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 703 (1399)
++|.+.. .+|..++++++|++|++.+|...+... ...+.++++|+.|+++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-----------------------------~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-----------------------------RIDFAGLTSLNELEIK 156 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-----------------------------TTTTTTCCEEEEEEEE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccC-----------------------------HhhhhcccccCeeecc
Confidence 9998332 456789999999999988775221100 1122333344444444
Q ss_pred ecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCC----CCCCCCCCcccee
Q 036079 704 WSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTS----LPSVGQLPLLKHL 779 (1399)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~----l~~l~~l~~L~~L 779 (1399)
.+.... ..+..+..+++|+.|++++|....+|.++. ..+++|+.|++++|.+... .+....+++|+.|
T Consensus 157 ~n~l~~-------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 157 ALSLRN-------YQSQSLKSIRDIHHLTLHLSESAFLLEIFA-DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp ETTCCE-------ECTTTTTTCSEEEEEEEECSBSTTHHHHHH-HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred CCcccc-------cChhhhhccccCceEecccCcccccchhhH-hhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 332111 122344555566666666665555555442 2345666666666554332 1122345556666
Q ss_pred eecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCccc---------CC
Q 036079 780 EISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQG---------TL 850 (1399)
Q Consensus 780 ~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~---------~~ 850 (1399)
++++|......+..+.. ....+++|+.+++++| .+.+ ..
T Consensus 229 ~l~~n~l~~~~~~~l~~-------------------------------~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~ 276 (549)
T 2z81_A 229 AFRGSVLTDESFNELLK-------------------------------LLRYILELSEVEFDDC-TLNGLGDFNPSESDV 276 (549)
T ss_dssp EEESCEEEHHHHHHHHG-------------------------------GGGGCTTCCEEEEESC-EEECCSCCCCCTTTC
T ss_pred eccccccchhHHHHHHH-------------------------------Hhhhhccccccccccc-cccccccccccchhh
Confidence 66555332221111100 1122444444444443 2221 01
Q ss_pred CCCCCCcceEEecccCcc--------cccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeeccc
Q 036079 851 PECLPLLEVLDIQCCGQL--------LVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRE 922 (1399)
Q Consensus 851 p~~l~~L~~L~l~~~~~~--------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 922 (1399)
+..+++|+.|.+.++..- +......++|+.|++++|.+..++.
T Consensus 277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~----------------------------- 327 (549)
T 2z81_A 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC----------------------------- 327 (549)
T ss_dssp CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCH-----------------------------
T ss_pred hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCH-----------------------------
Confidence 123344444444433210 0011223455555555555221110
Q ss_pred ccccccccccccccCCcCcEEEeecCCCCCCCcc------ccccccEEEEeecCCCCccc--hhhccCCCccEEEEccCC
Q 036079 923 LTYLWWSETRLLQDVRSLNRLQISRCPQLLSLPE------LQCRLRFLELSYCEGLTRLP--QALLTLSSLTEMRIAHCT 994 (1399)
Q Consensus 923 L~~L~l~~n~l~~~l~~L~~L~l~~~~~~~~~~~------~~~~L~~L~ls~n~~~~~~~--~~~~~l~~L~~L~l~~~~ 994 (1399)
.++..+++|+.|++++|.....+|. .+++|++|++++|.+.+..+ ..+..+++|++|++++|
T Consensus 328 ---------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N- 397 (549)
T 2z81_A 328 ---------SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN- 397 (549)
T ss_dssp ---------HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-
T ss_pred ---------HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-
Confidence 1123455555555555554333221 23556666666665443221 34555666666666664
Q ss_pred CccccCC-ccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCcccch
Q 036079 995 SLISFPE-AALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPE 1073 (1399)
Q Consensus 995 ~l~~~~~-~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 1073 (1399)
.+..+|. +..+++|++|++++|. ++.+|..+ .++|++|++++|. ++.++ ..+++|++|++++ +.++.+|.
T Consensus 398 ~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~----~~~L~~L~Ls~N~-l~~~~--~~l~~L~~L~Ls~-N~l~~ip~ 468 (549)
T 2z81_A 398 TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCI----PQTLEVLDVSNNN-LDSFS--LFLPRLQELYISR-NKLKTLPD 468 (549)
T ss_dssp CCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTS----CTTCSEEECCSSC-CSCCC--CCCTTCCEEECCS-SCCSSCCC
T ss_pred CCccCChhhcccccccEEECCCCC-cccccchh----cCCceEEECCCCC-hhhhc--ccCChhcEEECCC-CccCcCCC
Confidence 3334442 4445666666666665 44444332 2456666666654 33332 2445666666666 35555554
Q ss_pred hhhhcCCCCccEEeecCCCCcccccc-ccccCccceeeeccccC
Q 036079 1074 AWMENSSTSLESLNIYNCNSLTHIAR-IQLAPSLKRLIINSCHN 1116 (1399)
Q Consensus 1074 ~~~~~~l~~L~~L~L~~c~~l~~~~~-~~~~~~L~~L~l~~c~~ 1116 (1399)
. ..+++|+.|++++|...+..+. +..+++|+.|++++|+-
T Consensus 469 ~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 469 A---SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp G---GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred c---ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 2 2356666666666533322222 45566666666666553
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=326.01 Aligned_cols=266 Identities=16% Similarity=0.134 Sum_probs=171.5
Q ss_pred ccEEEEeec-CCCCccchhhccCCCccEEEEccCCCccccCC-ccCCCcccEEEccCCCccccCccccccCccCCcceEE
Q 036079 961 LRFLELSYC-EGLTRLPQALLTLSSLTEMRIAHCTSLISFPE-AALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLK 1038 (1399)
Q Consensus 961 L~~L~ls~n-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ 1038 (1399)
++.++++++ .+.+..|..+..+++|+.|++++|. +..+|. ...+ +|++|++++|. +..+|.. .+++|+.|+
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~~----~l~~L~~L~ 331 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCK-FGQFPTL----KLKSLKRLT 331 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCB-CSSCCBC----BCSSCCEEE
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccCc-ccccCcc----cccccCEEe
Confidence 455666666 4455667777888888888888864 445553 3445 88888888887 4566653 278888999
Q ss_pred ecCCCCccccCCCCCCCCCcEEEecCCCCCccc---chhhhhcCCCCccEEeecCCCCccccccccccCccceeeecccc
Q 036079 1039 IRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCL---PEAWMENSSTSLESLNIYNCNSLTHIARIQLAPSLKRLIINSCH 1115 (1399)
Q Consensus 1039 ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~---~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~L~~L~l~~c~ 1115 (1399)
+++|.....++. ..+++|++|++++| .++.. +..+ ..+++|++|++++|......+.+..+++|++|++++|.
T Consensus 332 l~~n~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 332 FTSNKGGNAFSE-VDLPSLEFLDLSRN-GLSFKGCCSQSD--FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407 (570)
T ss_dssp EESCBSCCBCCC-CBCTTCCEEECCSS-CCBEEEEEEHHH--HTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE
T ss_pred CcCCcccccccc-ccCCCCCEEeCcCC-ccCccccccccc--cccCccCEEECCCCccccccccccccCCCCEEEccCCc
Confidence 888775544444 56788889999884 45544 3333 46888999999987644443446777788888877754
Q ss_pred CcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCccccCceEEeeccCCcccccc-ccccc
Q 036079 1116 NLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQALKCLRVRFCSKLESFAE-SLDNT 1194 (1399)
Q Consensus 1116 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~ 1194 (1399)
-....+ ......++ +|+.|++++|......+. ...++
T Consensus 408 l~~~~~------------------~~~~~~l~------------------------~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 408 LKQMSE------------------FSVFLSLR------------------------NLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp EESCTT------------------SCTTTTCT------------------------TCCEEECTTSCCEECCTTTTTTCT
T ss_pred cccccc------------------hhhhhcCC------------------------CCCEEeCcCCcccccchhhhhcCC
Confidence 111000 00001122 344444444433332222 23456
Q ss_pred ccccccccccccc-cccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcCcccCccccCCCCCccEEEe
Q 036079 1195 SLEEITISWLENL-KILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCENLKALPNCMHNLTSLLCLEI 1273 (1399)
Q Consensus 1195 ~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 1273 (1399)
+|++|++++|... +.+|..+..+++|++|++++|......|..+..+++|+.|++++|......|..+.++++|+.|++
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 7777777777654 357777888888888888887654444667777788888888887544444456788888888888
Q ss_pred cCCCCC
Q 036079 1274 GLCPRL 1279 (1399)
Q Consensus 1274 ~~c~~l 1279 (1399)
++|+-.
T Consensus 526 ~~N~~~ 531 (570)
T 2z63_A 526 HTNPWD 531 (570)
T ss_dssp CSSCBC
T ss_pred cCCccc
Confidence 887543
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2e-30 Score=323.78 Aligned_cols=404 Identities=16% Similarity=0.193 Sum_probs=241.9
Q ss_pred CCcccEEEecCCcccccCccccCccccceeeccCcccccc-chhhhccccccEEEcCCccccccchhhhcccCcccEEEc
Q 036079 546 LPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRN 624 (1399)
Q Consensus 546 l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 624 (1399)
|+...+.|.+++.++.+|..+. ++|++|+|++|.|+.+ |..|.++++|++|++++|......|..|+++++|++|++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 3445567889999999998775 7999999999999976 678999999999999997655555678999999999999
Q ss_pred CCCcccccCCc-ccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEee
Q 036079 625 SNVDSLEEMPK-GFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLE 703 (1399)
Q Consensus 625 ~~n~~~~~lp~-~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 703 (1399)
++|. +..+|. .|+++++|++|++.+|......
T Consensus 82 s~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------------------------------------- 114 (549)
T 2z81_A 82 SDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLG---------------------------------------------- 114 (549)
T ss_dssp TTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSC----------------------------------------------
T ss_pred CCCc-cCccCHHHhccCCCCcEEECCCCcccccc----------------------------------------------
Confidence 9998 556654 4899999999988655432100
Q ss_pred ecCCCCchhHHHHHHhccCCCCCCCceEEEeecC-CCCCCc-ccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceee
Q 036079 704 WSTDISDAAEVETRVLDKLEPHQKLEKLTITGYG-GTKFPN-WLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLE 780 (1399)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~ 780 (1399)
.+..+..+++|+.|++++|. ...+|. .+ ..+++|+.|++++|.+....| .++.+++|++|+
T Consensus 115 --------------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 115 --------------VTSLFPNLTNLQTLRIGNVETFSEIRRIDF--AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp --------------SSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred --------------hhhhhhccCCccEEECCCCccccccCHhhh--hcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 01123445567777777776 445543 33 346677777777776655444 566777777777
Q ss_pred ecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccC------CCCCC
Q 036079 781 ISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGT------LPECL 854 (1399)
Q Consensus 781 Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~------~p~~l 854 (1399)
+++|... .++..+ ...+++|++|++++| .+++. +...+
T Consensus 179 l~~n~~~-~~~~~~----------------------------------~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~ 222 (549)
T 2z81_A 179 LHLSESA-FLLEIF----------------------------------ADILSSVRYLELRDT-NLARFQFSPLPVDEVS 222 (549)
T ss_dssp EECSBST-THHHHH----------------------------------HHSTTTBSEEEEESC-BCTTCCCCCCSSCCCC
T ss_pred cccCccc-ccchhh----------------------------------HhhcccccEEEccCC-ccccccccccchhhhh
Confidence 7665321 111111 112455555555552 33321 11234
Q ss_pred CCcceEEecccCc-------ccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeecccccccc
Q 036079 855 PLLEVLDIQCCGQ-------LLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYLW 927 (1399)
Q Consensus 855 ~~L~~L~l~~~~~-------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L~ 927 (1399)
++|+.|++++|.. ++..+..+++|+.+++++|....+.. +....
T Consensus 223 ~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-----------------------------~~~~~ 273 (549)
T 2z81_A 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-----------------------------FNPSE 273 (549)
T ss_dssp CCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-----------------------------CCCCT
T ss_pred hcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-----------------------------ccccc
Confidence 5566666665532 22344567778888888776322111 00000
Q ss_pred cccccccccCCcCcEEEeecCCCCCC-----Cc---cccccccEEEEeecCCCCccchhh-ccCCCccEEEEccCCCccc
Q 036079 928 WSETRLLQDVRSLNRLQISRCPQLLS-----LP---ELQCRLRFLELSYCEGLTRLPQAL-LTLSSLTEMRIAHCTSLIS 998 (1399)
Q Consensus 928 l~~n~l~~~l~~L~~L~l~~~~~~~~-----~~---~~~~~L~~L~ls~n~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~ 998 (1399)
...+..+++|+.|++.++..... ++ ...++|++|++++|.+ +.+|..+ ..+++|+.|++++|.....
T Consensus 274 ---~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~ 349 (549)
T 2z81_A 274 ---SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEE 349 (549)
T ss_dssp ---TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHH
T ss_pred ---hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccc
Confidence 01123455666666665542211 11 1235677777777764 4555554 4677777777777655443
Q ss_pred cC----CccCCCcccEEEccCCCccccCcc--ccccCccCCcceEEecCCCCccccCC-CCCCCCCcEEEecCCCCCccc
Q 036079 999 FP----EAALPSRLRTIDIEGCNALKSLPE--AWMHNSYSSLQSLKIRYCKSLVSFPE-VSLPSRLRTIEIEGCYALKCL 1071 (1399)
Q Consensus 999 ~~----~~~~~~~L~~L~Ls~~~~l~~~~~--~~~~~~l~~L~~L~ls~~~~l~~~~~-~~~~~~L~~L~l~~c~~l~~~ 1071 (1399)
++ ....+++|++|++++|. ++.++. ..+ ..+++|++|++++|. ++.+|. +..+++|++|++++| .++.+
T Consensus 350 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N-~l~~l 425 (549)
T 2z81_A 350 YLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEIL-LTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSST-GIRVV 425 (549)
T ss_dssp HHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHG-GGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTS-CCSCC
T ss_pred cccchhhhhccccCcEEEccCCc-ccccccchhhh-hcCCCCCEEECCCCC-CccCChhhcccccccEEECCCC-Ccccc
Confidence 32 24456777777777776 444432 111 126777777777764 444443 334456666666663 34444
Q ss_pred chhhhhcCCCCccEEeecCC
Q 036079 1072 PEAWMENSSTSLESLNIYNC 1091 (1399)
Q Consensus 1072 ~~~~~~~~l~~L~~L~L~~c 1091 (1399)
+... .++|+.|++++|
T Consensus 426 ~~~~----~~~L~~L~Ls~N 441 (549)
T 2z81_A 426 KTCI----PQTLEVLDVSNN 441 (549)
T ss_dssp CTTS----CTTCSEEECCSS
T ss_pred cchh----cCCceEEECCCC
Confidence 4321 234555555544
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.2e-30 Score=322.04 Aligned_cols=103 Identities=21% Similarity=0.216 Sum_probs=61.8
Q ss_pred cccEEEecCCccccc-CccccCccccceeeccCccccccc-hhhhccccccEEEcCCccccccchhhhcccCcccEEEcC
Q 036079 548 RLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQILP-ESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNS 625 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 625 (1399)
++++|+|++|.++.+ +.+|.++++|++|+|++|.++.+| ..|+++++|++|++++|......|..|+++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 566666666666665 345666666666666666666553 446666666666666654333333556666666666666
Q ss_pred CCcccccCCc-ccccccccCccceEEe
Q 036079 626 NVDSLEEMPK-GFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 626 ~n~~~~~lp~-~~~~L~~L~~L~l~~~ 651 (1399)
+|. +..+|. .++++++|++|++.+|
T Consensus 109 ~n~-l~~l~~~~~~~l~~L~~L~L~~n 134 (570)
T 2z63_A 109 ETN-LASLENFPIGHLKTLKELNVAHN 134 (570)
T ss_dssp TSC-CCCSTTCSCTTCTTCCEEECCSS
T ss_pred ccc-cccCCCccccccccccEEecCCC
Confidence 665 444443 3566666666655444
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=5.9e-31 Score=330.95 Aligned_cols=412 Identities=17% Similarity=0.186 Sum_probs=248.9
Q ss_pred CCCcchhhHHhhhcCCCCcccEEEecCCcccccC----------------------------------cccc--------
Q 036079 530 YEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKLP----------------------------------NEIG-------- 567 (1399)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~lp----------------------------------~~~~-------- 567 (1399)
++++.+.+.+|+.|.++++|++|+|++|.+..-+ ..+.
T Consensus 88 L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~ 167 (636)
T 4eco_A 88 LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167 (636)
T ss_dssp CTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred ecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhh
Confidence 5567788889999999999999999999752111 1111
Q ss_pred -----------Cccccceeecc--CccccccchhhhccccccEEEcCCcccccc-----------------chhhhc--c
Q 036079 568 -----------NLKHLRFLNLS--GTEIQILPESINSLYNLHTILLENCHRLKK-----------------LCKDMG--N 615 (1399)
Q Consensus 568 -----------~l~~L~~L~Ls--~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~-----------------lp~~i~--~ 615 (1399)
....++.+.+. +|+++.+|+.|+++++|++|+|++|...+. +|..++ +
T Consensus 168 ~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~ 247 (636)
T 4eco_A 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247 (636)
T ss_dssp HCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred cCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc
Confidence 01112222222 577888999999999999999999764443 999988 9
Q ss_pred cCcccEEEcCCCcccccCCcccccccccCccceEEec-cCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCc
Q 036079 616 LIKLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVG-KDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGK 694 (1399)
Q Consensus 616 L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~-~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 694 (1399)
+++|++|++++|.+...+|..++++++|++|++.+|. ..+.. .+.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~-----------------------------lp~----- 293 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ-----------------------------LKD----- 293 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHH-----------------------------HHH-----
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcccc-----------------------------chH-----
Confidence 9999999999999888999999999999999886554 21100 000
Q ss_pred cCcCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCc--ccCcCCCcceeEEEeeCCCCCCCCCCCCC
Q 036079 695 LNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPN--WLGESSFLKLLFLRFEGCGKCTSLPSVGQ 772 (1399)
Q Consensus 695 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~l~~~~~~~~l~~l~~ 772 (1399)
....+..+..+++|+.|++++|.+..+|. .+. .+++|+.|++++|.+.+.+|.++.
T Consensus 294 --------------------~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~ 351 (636)
T 4eco_A 294 --------------------DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGS 351 (636)
T ss_dssp --------------------HHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEE
T ss_pred --------------------HHHhhhccccCCCCCEEECCCCcCCccCchhhhc--cCCCCCEEeCcCCcCccchhhhCC
Confidence 00011122334678888888888888887 663 577888888888887756777888
Q ss_pred CCccceeeecccccceecCccccCCCCCCCCCC-ccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCC
Q 036079 773 LPLLKHLEISRMDRVKSVGPEFYGNSCSMPFPS-LETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLP 851 (1399)
Q Consensus 773 l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p 851 (1399)
+++|+.|++++|... .++..+.. +++ |++|+++++... .+ +... ....+++|++|++++ +.+++.+|
T Consensus 352 l~~L~~L~L~~N~l~-~lp~~l~~------l~~~L~~L~Ls~N~l~-~l-p~~~--~~~~l~~L~~L~Ls~-N~l~~~~p 419 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-EIPANFCG------FTEQVENLSFAHNKLK-YI-PNIF--DAKSVSVMSAIDFSY-NEIGSVDG 419 (636)
T ss_dssp EEEESEEECCSSEEE-ECCTTSEE------ECTTCCEEECCSSCCS-SC-CSCC--CTTCSSCEEEEECCS-SCTTTTTT
T ss_pred CCCCCEEECCCCccc-cccHhhhh------hcccCcEEEccCCcCc-cc-chhh--hhcccCccCEEECcC-CcCCCcch
Confidence 888888888887544 55444433 555 666666654422 11 1100 111234666666666 35554455
Q ss_pred CCCCCcceEEecccCcccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeecccccccccccc
Q 036079 852 ECLPLLEVLDIQCCGQLLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYLWWSET 931 (1399)
Q Consensus 852 ~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L~l~~n 931 (1399)
..++.. ......+++|+.|++++|.+..++.
T Consensus 420 ~~l~~~-----------~~~~~~~~~L~~L~Ls~N~l~~lp~-------------------------------------- 450 (636)
T 4eco_A 420 KNFDPL-----------DPTPFKGINVSSINLSNNQISKFPK-------------------------------------- 450 (636)
T ss_dssp CSSCTT-----------CSSCCCCCCEEEEECCSSCCCSCCT--------------------------------------
T ss_pred hhhccc-----------ccccccCCCCCEEECcCCccCcCCH--------------------------------------
Confidence 433200 0001134556666666665221111
Q ss_pred cccccCCcCcEEEeecCCCCCCCcc-ccc----------cccEEEEeecCCCCccchhhc--cCCCccEEEEccCCCccc
Q 036079 932 RLLQDVRSLNRLQISRCPQLLSLPE-LQC----------RLRFLELSYCEGLTRLPQALL--TLSSLTEMRIAHCTSLIS 998 (1399)
Q Consensus 932 ~l~~~l~~L~~L~l~~~~~~~~~~~-~~~----------~L~~L~ls~n~~~~~~~~~~~--~l~~L~~L~l~~~~~l~~ 998 (1399)
.++..+++|+.|++++|... .+|. .+. +|++|++++|.+. .+|..+. .+++|+.|++++|....
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-
Confidence 11234555666666666533 4443 111 5666666666544 4555554 56666666666643333
Q ss_pred cC-CccCCCcccEEEcc------CCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCC
Q 036079 999 FP-EAALPSRLRTIDIE------GCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGC 1065 (1399)
Q Consensus 999 ~~-~~~~~~~L~~L~Ls------~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c 1065 (1399)
+| .+..+++|++|+++ +|...+.+|..+.. +++|++|++++|.. +.+|.. ..++|+.|++++|
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N 597 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL--CPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDN 597 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSC
T ss_pred cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc--CCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCC
Confidence 44 34445666666663 34445556655543 66677777766553 555543 2256666666663
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=314.49 Aligned_cols=449 Identities=18% Similarity=0.131 Sum_probs=260.1
Q ss_pred CCcchhhHHhhhcCCCCcccEEEecCCcccccC-ccccCccccceeeccCcccccc-chhhhccccccEEEcCCcccccc
Q 036079 531 EGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKK 608 (1399)
Q Consensus 531 ~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~ 608 (1399)
++|.++ .+|..+. ++|++|+|++|.+..+| ..|.++++|++|+|++|+|+.+ |..|+++++|++|++++| .+..
T Consensus 8 s~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 83 (520)
T 2z7x_B 8 SKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVK 83 (520)
T ss_dssp TTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCE
T ss_pred CCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceee
Confidence 344443 3444443 66777777777666653 5666677777777777776655 556666777777777764 3455
Q ss_pred chhhhcccCcccEEEcCCCcccc-cCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhh
Q 036079 609 LCKDMGNLIKLHHLRNSNVDSLE-EMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAR 687 (1399)
Q Consensus 609 lp~~i~~L~~L~~L~l~~n~~~~-~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~ 687 (1399)
+|.. .+++|++|++++|.+.. .+|..++++++|++|++.+|.+..
T Consensus 84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-------------------------------- 129 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-------------------------------- 129 (520)
T ss_dssp EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--------------------------------
T ss_pred cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--------------------------------
Confidence 6655 66677777777666322 345566666666666665544321
Q ss_pred hhhccCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCC--ceEEEeecCC--C-CCCcccCcCCCcceeEEEeeCCC
Q 036079 688 EAQLNGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKL--EKLTITGYGG--T-KFPNWLGESSFLKLLFLRFEGCG 762 (1399)
Q Consensus 688 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~-~~p~~~~~~~~~~L~~L~l~~~~ 762 (1399)
..+..+++| +.|++++|.+ . ..|.++..... +...+++++|.
T Consensus 130 --------------------------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-~~l~l~l~~n~ 176 (520)
T 2z7x_B 130 --------------------------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT-ESLHIVFPTNK 176 (520)
T ss_dssp --------------------------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-EEEEEECCSSS
T ss_pred --------------------------------hhccccccceeeEEEeeccccccccccccccccccc-ceEEEEeccCc
Confidence 011222334 7888888876 3 45665543222 45567777777
Q ss_pred CCCCCC--CCCCCCccceeeecccc-------cceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCC
Q 036079 763 KCTSLP--SVGQLPLLKHLEISRMD-------RVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFP 833 (1399)
Q Consensus 763 ~~~~l~--~l~~l~~L~~L~Ls~~~-------~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 833 (1399)
....++ .+..+++|+.|++++|. ..+.++ .+.. +++|+.|.+.++........ +. .....++
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~------l~~L~~L~l~~~~l~~~~~~-~~-~~~~~~~ 247 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQT------NPKLSNLTLNNIETTWNSFI-RI-LQLVWHT 247 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGG------CTTCCEEEEEEEEEEHHHHH-HH-HHHHHTS
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchh-hhcc------ccchhhccccccccCHHHHH-HH-HHHhhhC
Confidence 666555 46778899999998874 222211 2221 55666666554332111000 00 0000123
Q ss_pred ccceeeecCCcCcccCCCCCCCCcceEEecccCcccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcc
Q 036079 834 KLRTLSLVCCSKLQGTLPECLPLLEVLDIQCCGQLLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLE 913 (1399)
Q Consensus 834 ~L~~L~L~~c~~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~ 913 (1399)
+|++|++++| .++|.+|..+-. .....+++|+.+++++|.. .++...
T Consensus 248 ~L~~L~l~~n-~l~~~~p~~~~~-------------~~~~~l~~L~~l~l~~n~~-~~p~~~------------------ 294 (520)
T 2z7x_B 248 TVWYFSISNV-KLQGQLDFRDFD-------------YSGTSLKALSIHQVVSDVF-GFPQSY------------------ 294 (520)
T ss_dssp SCSEEEEEEE-EEESCCCCCCCC-------------CCSCCCCEEEEEEEEECCC-CSCTHH------------------
T ss_pred cccEEEeecc-cccCccccchhh-------------cccccCceeEeccccccce-ecchhh------------------
Confidence 5555555552 444444432200 0016677777777777763 111000
Q ss_pred eEEEeecccccccccccccccccCCcCcEEEeecCCCCCCC-ccccccccEEEEeecCCCCccchhhccCCCccEEEEcc
Q 036079 914 KVGIVNVRELTYLWWSETRLLQDVRSLNRLQISRCPQLLSL-PELQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAH 992 (1399)
Q Consensus 914 ~l~l~~~~~L~~L~l~~n~l~~~l~~L~~L~l~~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 992 (1399)
+.. ...-++|+.|++++|...... +..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 295 ---~~~--------------~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 357 (520)
T 2z7x_B 295 ---IYE--------------IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357 (520)
T ss_dssp ---HHH--------------HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred ---hhc--------------ccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence 000 001135677777777643322 24556778888888877777777777788888888887
Q ss_pred CCCcc--ccC-CccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCc
Q 036079 993 CTSLI--SFP-EAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALK 1069 (1399)
Q Consensus 993 ~~~l~--~~~-~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~ 1069 (1399)
|.... .+| .+..+++|++|++++|.....+|...+. .+++|++|++++|.....+|. ..+++|+.|++++ +.++
T Consensus 358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~-~l~~~L~~L~Ls~-N~l~ 434 (520)
T 2z7x_B 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS-WTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHS-NKIK 434 (520)
T ss_dssp SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC-CCTTCCEEECCSSCCCGGGGG-SCCTTCCEEECCS-SCCC
T ss_pred CccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc-cCccCCEEECcCCCCCcchhh-hhcccCCEEECCC-Cccc
Confidence 64432 222 2556778888888887744446654332 267888888888765444443 2236788888888 4677
Q ss_pred ccchhhhhcCCCCccEEeecCCCCcccccc--ccccCccceeeecccc
Q 036079 1070 CLPEAWMENSSTSLESLNIYNCNSLTHIAR--IQLAPSLKRLIINSCH 1115 (1399)
Q Consensus 1070 ~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~--~~~~~~L~~L~l~~c~ 1115 (1399)
.+|..+. .+++|++|++++| .++.+|. +..+++|++|++++++
T Consensus 435 ~ip~~~~--~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 435 SIPKQVV--KLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCCGGGG--GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccchhhh--cCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 7777653 6788888888876 4445654 5677888888887765
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.8e-30 Score=326.69 Aligned_cols=222 Identities=19% Similarity=0.180 Sum_probs=159.8
Q ss_pred CCCcchhhHHhhhcCCCCcccEEEe-cCCccccc-Ccc------------------------------------------
Q 036079 530 YEGNYLAWSVLQMLLNLPRLRVFSL-HGYCVSKL-PNE------------------------------------------ 565 (1399)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~Lr~L~L-~~n~i~~l-p~~------------------------------------------ 565 (1399)
++++.+.+.+|+.|.++++|++|+| ++|.+... |-.
T Consensus 330 Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~ 409 (876)
T 4ecn_A 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409 (876)
T ss_dssp CTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred CccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence 5667788899999999999999999 77765321 100
Q ss_pred ---------ccCccccceeeccC--ccccccchhhhccccccEEEcCCccccc-----------------cchhhhc--c
Q 036079 566 ---------IGNLKHLRFLNLSG--TEIQILPESINSLYNLHTILLENCHRLK-----------------KLCKDMG--N 615 (1399)
Q Consensus 566 ---------~~~l~~L~~L~Ls~--n~i~~lp~~i~~L~~L~~L~L~~~~~l~-----------------~lp~~i~--~ 615 (1399)
......++.+.+.. |+++.+|..|++|++|++|+|++|...+ .+|..++ +
T Consensus 410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~ 489 (876)
T 4ecn_A 410 RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489 (876)
T ss_dssp TCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred hCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc
Confidence 01222344444443 7788899999999999999999976554 2899887 9
Q ss_pred cCcccEEEcCCCcccccCCcccccccccCccceEEec-cCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCc
Q 036079 616 LIKLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVG-KDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGK 694 (1399)
Q Consensus 616 L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~-~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 694 (1399)
+++|++|++++|.+...+|..++++++|++|++.+|. ..+.. + +.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~----i-------------------------P~----- 535 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ----L-------------------------KA----- 535 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHH----H-------------------------HH-----
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccccc----c-------------------------hH-----
Confidence 9999999999998888999999999999999886553 21100 0 00
Q ss_pred cCcCceEeeecCCCCchhHHHHHHh-ccCCCCCCCceEEEeecCCCCCCc--ccCcCCCcceeEEEeeCCCCCCCCCCCC
Q 036079 695 LNLKALLLEWSTDISDAAEVETRVL-DKLEPHQKLEKLTITGYGGTKFPN--WLGESSFLKLLFLRFEGCGKCTSLPSVG 771 (1399)
Q Consensus 695 ~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~l~~~~~~~~l~~l~ 771 (1399)
....+ ..+..+++|+.|++++|.+..+|. .+ ..+++|+.|++++|.+. .+|.++
T Consensus 536 --------------------~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l--~~L~~L~~L~Ls~N~l~-~lp~~~ 592 (876)
T 4ecn_A 536 --------------------DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL--QKMVKLGLLDCVHNKVR-HLEAFG 592 (876)
T ss_dssp --------------------HHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH--TTCTTCCEEECTTSCCC-BCCCCC
T ss_pred --------------------HHHhhhhcccccCCccEEEeeCCcCCccCChhhh--hcCCCCCEEECCCCCcc-cchhhc
Confidence 00011 144566788899999998888888 66 35788999999988876 677888
Q ss_pred CCCccceeeecccccceecCccccCCCCCCCCCC-ccEEeccccc
Q 036079 772 QLPLLKHLEISRMDRVKSVGPEFYGNSCSMPFPS-LETLSFFHMR 815 (1399)
Q Consensus 772 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~ 815 (1399)
.+++|+.|++++|... .++..+.. +++ |+.|+++++.
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~------l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCA------FTDQVEGLGFSHNK 630 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCE------ECTTCCEEECCSSC
T ss_pred CCCcceEEECcCCccc-cchHHHhh------ccccCCEEECcCCC
Confidence 8899999999888655 55444333 555 6666666654
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=4.7e-30 Score=317.67 Aligned_cols=426 Identities=13% Similarity=0.128 Sum_probs=267.5
Q ss_pred CCCCcchhhHHhhhcCCCCcccEEEecCCccccc-CccccCccccceeeccCccccccchhhhccccccEEEcCCccccc
Q 036079 529 NYEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLK 607 (1399)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~ 607 (1399)
++++|.+....+..|..+++|++|+|++|.++.+ |..|+++++|++|+|++|+|+.+|.. .+++|++|++++|....
T Consensus 27 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 27 NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp ECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSS
T ss_pred ECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCcccc
Confidence 3566777766677899999999999999999988 78999999999999999999999987 89999999999976544
Q ss_pred -cchhhhcccCcccEEEcCCCcccccCCccccccccc--CccceEEeccCCC-CChhcccCcccccCceEEeccCCCCCc
Q 036079 608 -KLCKDMGNLIKLHHLRNSNVDSLEEMPKGFGKLTCL--LTLCTFVVGKDGG-SGLRELKSLTHLQGTLKISKLENVKDV 683 (1399)
Q Consensus 608 -~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L--~~L~l~~~~~~~~-~~~~~L~~L~~L~~~l~~~~l~~~~~~ 683 (1399)
.+|..|+++++|++|++++|. +.. ..+..+++| ++|++..+..... .....+..+..
T Consensus 105 ~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~---------------- 165 (520)
T 2z7x_B 105 LPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT---------------- 165 (520)
T ss_dssp CCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE----------------
T ss_pred ccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccccccc----------------
Confidence 478899999999999999998 433 457777777 8888877755210 00011111100
Q ss_pred chhhhhhccCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCC-CCCcccCcCCCcceeEEEeeCCC
Q 036079 684 GDAREAQLNGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGT-KFPNWLGESSFLKLLFLRFEGCG 762 (1399)
Q Consensus 684 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~ 762 (1399)
+...+++++|.+. .++.... ..+++|+.|++++|.
T Consensus 166 -------------------------------------------~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~ 201 (520)
T 2z7x_B 166 -------------------------------------------ESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVL 201 (520)
T ss_dssp -------------------------------------------EEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECC
T ss_pred -------------------------------------------ceEEEEeccCcchhhhhhhhh-hcccceeeccccccc
Confidence 1112344445443 3343333 468899999999986
Q ss_pred -------CCCCCCCCCCCCccceeeecccccceecCccccCCCCCCCCCCccEEecccccccccccccCC-CcccCCCCc
Q 036079 763 -------KCTSLPSVGQLPLLKHLEISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGA-GQEVDGFPK 834 (1399)
Q Consensus 763 -------~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~-~~~~~~~~~ 834 (1399)
..+.++.++.+++|+.|++++|.........+... ...++|++|++.++...... +... ....+.+++
T Consensus 202 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~-p~~~~~~~~~~l~~ 277 (520)
T 2z7x_B 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL---VWHTTVWYFSISNVKLQGQL-DFRDFDYSGTSLKA 277 (520)
T ss_dssp STTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH---HHTSSCSEEEEEEEEEESCC-CCCCCCCCSCCCCE
T ss_pred cccccceeecchhhhccccchhhccccccccCHHHHHHHHHH---hhhCcccEEEeecccccCcc-ccchhhcccccCce
Confidence 44455678899999999999876544322211110 01468999999987532221 1110 001166888
Q ss_pred cceeeecCCcCcccCCCC-CC------CCcceEEecccCcccccC-CCCCccceEEEeCCCCccccCCCCCCCccceeec
Q 036079 835 LRTLSLVCCSKLQGTLPE-CL------PLLEVLDIQCCGQLLVTI-KYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFE 906 (1399)
Q Consensus 835 L~~L~L~~c~~l~~~~p~-~l------~~L~~L~l~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 906 (1399)
|+.++++++ .+ .+|. .+ .+|+.|++++|+..+..+ ..+++|++|++++|.
T Consensus 278 L~~l~l~~n-~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~------------------- 335 (520)
T 2z7x_B 278 LSIHQVVSD-VF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL------------------- 335 (520)
T ss_dssp EEEEEEEEC-CC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-------------------
T ss_pred eEecccccc-ce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCc-------------------
Confidence 888888884 43 3442 11 345555555554332222 344444444444444
Q ss_pred cCCCCcceEEEeecccccccccccccccccCCcCcEEEeecCCCCCCCcc---ccccccEEEEeecCCCC--ccchhhcc
Q 036079 907 KGLPKLEKVGIVNVRELTYLWWSETRLLQDVRSLNRLQISRCPQLLSLPE---LQCRLRFLELSYCEGLT--RLPQALLT 981 (1399)
Q Consensus 907 ~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~l~~L~~L~l~~~~~~~~~~~---~~~~L~~L~ls~n~~~~--~~~~~~~~ 981 (1399)
....+|. .+++|++|++++|.+.+ .+|..+..
T Consensus 336 -------------------------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 336 -------------------------------------------LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372 (520)
T ss_dssp -------------------------------------------CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred -------------------------------------------cChhhhhhhccCCCCCEEEccCCccCccccchHHHhh
Confidence 3332332 22455555555555544 34555666
Q ss_pred CCCccEEEEccCCCccccCC--ccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCC-CCCCCCCc
Q 036079 982 LSSLTEMRIAHCTSLISFPE--AALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE-VSLPSRLR 1058 (1399)
Q Consensus 982 l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~-~~~~~~L~ 1058 (1399)
+++|+.|++++|.....+|. +..+++|++|++++|...+.+|..+ .++|+.|++++|. ++.+|. ...+++|+
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL----PPRIKVLDLHSNK-IKSIPKQVVKLEALQ 447 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC----CTTCCEEECCSSC-CCCCCGGGGGCTTCC
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh----cccCCEEECCCCc-ccccchhhhcCCCCC
Confidence 67777777776544433442 4456667777777766444444432 1467777777654 445553 34566777
Q ss_pred EEEecCCCCCcccchhhhhcCCCCccEEeecCCCCcc
Q 036079 1059 TIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLT 1095 (1399)
Q Consensus 1059 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~ 1095 (1399)
+|++++ +.++.+|...+ ..+++|+.|++++|+...
T Consensus 448 ~L~L~~-N~l~~l~~~~~-~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 448 ELNVAS-NQLKSVPDGIF-DRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp EEECCS-SCCCCCCTTTT-TTCTTCCEEECCSSCBCC
T ss_pred EEECCC-CcCCccCHHHh-ccCCcccEEECcCCCCcc
Confidence 777777 35666666522 457778888888775443
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=7.1e-29 Score=312.05 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=132.7
Q ss_pred CcccEEEecCCccc-ccCccccCccccceeeccCcccc-------------ccch---------------------hhh-
Q 036079 547 PRLRVFSLHGYCVS-KLPNEIGNLKHLRFLNLSGTEIQ-------------ILPE---------------------SIN- 590 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~-~lp~~~~~l~~L~~L~Ls~n~i~-------------~lp~---------------------~i~- 590 (1399)
.+++.|+|+++.+. .+|.+|++|++|++|+|++|.+. .+|. .+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57999999999998 67999999999999999999762 1121 111
Q ss_pred ------------------ccccccEEEcCC-ccccccchhhhcccCcccEEEcCCCccccc-----------------CC
Q 036079 591 ------------------SLYNLHTILLEN-CHRLKKLCKDMGNLIKLHHLRNSNVDSLEE-----------------MP 634 (1399)
Q Consensus 591 ------------------~L~~L~~L~L~~-~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~-----------------lp 634 (1399)
....++.+.+.. ++.+..+|..|+++++|++|++++|.+... +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 011122222222 234555999999999999999999994443 99
Q ss_pred cccc--cccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEeeecCCCCchh
Q 036079 635 KGFG--KLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLEWSTDISDAA 712 (1399)
Q Consensus 635 ~~~~--~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 712 (1399)
..++ ++++|++|++.+|...+.
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~-------------------------------------------------------- 264 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTK-------------------------------------------------------- 264 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSS--------------------------------------------------------
T ss_pred hhhhhcccCCCCEEEecCCcCCcc--------------------------------------------------------
Confidence 9999 999999999988865421
Q ss_pred HHHHHHhccCCCCCCCceEEEeecC-CCC--CCcccCc----CCCcceeEEEeeCCCCCCCCC---CCCCCCccceeeec
Q 036079 713 EVETRVLDKLEPHQKLEKLTITGYG-GTK--FPNWLGE----SSFLKLLFLRFEGCGKCTSLP---SVGQLPLLKHLEIS 782 (1399)
Q Consensus 713 ~~~~~~~~~l~~~~~L~~L~l~~~~-~~~--~p~~~~~----~~~~~L~~L~l~~~~~~~~l~---~l~~l~~L~~L~Ls 782 (1399)
.+..+..+++|+.|++++|. ++. +|..++. ..+++|+.|++++|.+. .+| .++.+++|++|+++
T Consensus 265 -----~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 265 -----LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp -----CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECC
T ss_pred -----ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCc
Confidence 12234556677888888887 663 7766642 12378999999998877 555 48889999999999
Q ss_pred ccccceecC
Q 036079 783 RMDRVKSVG 791 (1399)
Q Consensus 783 ~~~~~~~~~ 791 (1399)
+|...+.++
T Consensus 339 ~N~l~g~ip 347 (636)
T 4eco_A 339 YNQLEGKLP 347 (636)
T ss_dssp SCCCEEECC
T ss_pred CCcCccchh
Confidence 887655554
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.6e-27 Score=304.38 Aligned_cols=111 Identities=22% Similarity=0.228 Sum_probs=91.5
Q ss_pred HhhhcCCCCcccEEEecCCcccccC-ccccCccccceeeccCccccccch-hhhccccccEEEcCCccccccchh-hhcc
Q 036079 539 VLQMLLNLPRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQILPE-SINSLYNLHTILLENCHRLKKLCK-DMGN 615 (1399)
Q Consensus 539 ~~~~~~~l~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~ 615 (1399)
+|..+. +++++|||++|.|+.+| .+|.++++|++|+|++|+|+.+|+ +|.+|++|++|+|++| .+..+|. .|.+
T Consensus 46 vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~ 122 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG 122 (635)
T ss_dssp CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTT
T ss_pred cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcC
Confidence 444443 47899999999999995 679999999999999999998865 6899999999999996 4666664 5899
Q ss_pred cCcccEEEcCCCcccccCCc-ccccccccCccceEEecc
Q 036079 616 LIKLHHLRNSNVDSLEEMPK-GFGKLTCLLTLCTFVVGK 653 (1399)
Q Consensus 616 L~~L~~L~l~~n~~~~~lp~-~~~~L~~L~~L~l~~~~~ 653 (1399)
|++|++|++++|. +..+|. .|+++++|++|++.+|.+
T Consensus 123 L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 123 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCcc
Confidence 9999999999998 666765 488888888888866644
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.4e-28 Score=312.38 Aligned_cols=120 Identities=20% Similarity=0.219 Sum_probs=106.4
Q ss_pred CcchhhHHhhhcCCCCcccEEEecCCcccc------------------cCcccc--CccccceeeccCcccc-ccchhhh
Q 036079 532 GNYLAWSVLQMLLNLPRLRVFSLHGYCVSK------------------LPNEIG--NLKHLRFLNLSGTEIQ-ILPESIN 590 (1399)
Q Consensus 532 ~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~------------------lp~~~~--~l~~L~~L~Ls~n~i~-~lp~~i~ 590 (1399)
.|.+.+ +|..|.++++|++|+|++|.++. +|+.++ ++++|++|+|++|.+. .+|..|+
T Consensus 434 ~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 434 TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred cCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 366766 88889999999999999999998 999988 9999999999999876 8899999
Q ss_pred ccccccEEEcCCcc-ccc-cchhhhcccC-------cccEEEcCCCcccccCCc--ccccccccCccceEEecc
Q 036079 591 SLYNLHTILLENCH-RLK-KLCKDMGNLI-------KLHHLRNSNVDSLEEMPK--GFGKLTCLLTLCTFVVGK 653 (1399)
Q Consensus 591 ~L~~L~~L~L~~~~-~l~-~lp~~i~~L~-------~L~~L~l~~n~~~~~lp~--~~~~L~~L~~L~l~~~~~ 653 (1399)
++++|++|+|++|. ... .+|..++.++ +|++|++++|. +..+|. .++++++|++|++.+|.+
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKV 585 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCC
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCc
Confidence 99999999999986 444 6999888877 99999999999 569998 899999999998866544
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.9e-28 Score=293.50 Aligned_cols=412 Identities=22% Similarity=0.233 Sum_probs=194.0
Q ss_pred CCCcccEEEecCCcccccCccccCccccceeeccCcccc-ccchhhhccccccEEEcCCccccccchhhhcccCcccEEE
Q 036079 545 NLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQ-ILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLR 623 (1399)
Q Consensus 545 ~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 623 (1399)
+.++|++|++++|.+..+|++|+++++|++|++++|.+. .+|.+++++++|+++++++|.. .+|++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 357899999999999999999999999999999999998 8899999999987777766531 4567777
Q ss_pred cCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEee
Q 036079 624 NSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLE 703 (1399)
Q Consensus 624 l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 703 (1399)
+++|. +..+|.. .++|++|++.+|...+.
T Consensus 78 l~~~~-l~~lp~~---~~~L~~L~l~~n~l~~l----------------------------------------------- 106 (454)
T 1jl5_A 78 LNNLG-LSSLPEL---PPHLESLVASCNSLTEL----------------------------------------------- 106 (454)
T ss_dssp CTTSC-CSCCCSC---CTTCSEEECCSSCCSSC-----------------------------------------------
T ss_pred ecCCc-cccCCCC---cCCCCEEEccCCcCCcc-----------------------------------------------
Confidence 77776 5556542 24555555533322110
Q ss_pred ecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCCCCccceeeecc
Q 036079 704 WSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQLPLLKHLEISR 783 (1399)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~Ls~ 783 (1399)
+ ..+++|+.|++++|.+..+|.. .++|++|++++|.+.. +|.++.+++|++|++++
T Consensus 107 ---------------p---~~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 107 ---------------P---ELPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDN 162 (454)
T ss_dssp ---------------C---CCCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCS
T ss_pred ---------------c---cccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCC
Confidence 0 0013566666666666665542 1467777777776554 55677777777777777
Q ss_pred cccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCCCCCCcceEEec
Q 036079 784 MDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPECLPLLEVLDIQ 863 (1399)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~~l~~L~~L~l~ 863 (1399)
|...+ ++. .+++|++|++.++.. ... + .++.+++|++|++++ +.++ .+|...++|++|+++
T Consensus 163 N~l~~-lp~---------~~~~L~~L~L~~n~l-~~l-~-----~~~~l~~L~~L~l~~-N~l~-~l~~~~~~L~~L~l~ 223 (454)
T 1jl5_A 163 NSLKK-LPD---------LPPSLEFIAAGNNQL-EEL-P-----ELQNLPFLTAIYADN-NSLK-KLPDLPLSLESIVAG 223 (454)
T ss_dssp SCCSC-CCC---------CCTTCCEEECCSSCC-SSC-C-----CCTTCTTCCEEECCS-SCCS-SCCCCCTTCCEEECC
T ss_pred CcCcc-cCC---------CcccccEEECcCCcC-CcC-c-----cccCCCCCCEEECCC-CcCC-cCCCCcCcccEEECc
Confidence 65332 221 145777777776532 221 1 356788888999888 4676 477767788888888
Q ss_pred ccC--cccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeeccccccccccccccc---ccCC
Q 036079 864 CCG--QLLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYLWWSETRLL---QDVR 938 (1399)
Q Consensus 864 ~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L~l~~n~l~---~~l~ 938 (1399)
+|. .+| .+..+++|++|++++|....++.. +++|+.|++++|.+. ..++
T Consensus 224 ~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~-------------------------~~~L~~L~l~~N~l~~l~~~~~ 277 (454)
T 1jl5_A 224 NNILEELP-ELQNLPFLTTIYADNNLLKTLPDL-------------------------PPSLEALNVRDNYLTDLPELPQ 277 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC-------------------------CTTCCEEECCSSCCSCCCCCCT
T ss_pred CCcCCccc-ccCCCCCCCEEECCCCcCCccccc-------------------------ccccCEEECCCCcccccCcccC
Confidence 874 344 477888999999998874322110 122333333333321 1234
Q ss_pred cCcEEEeecCCCCCCCccccccccEEEEeecCCCCccchhhccC-CCccEEEEccCCCccccCCccCCCcccEEEccCCC
Q 036079 939 SLNRLQISRCPQLLSLPELQCRLRFLELSYCEGLTRLPQALLTL-SSLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCN 1017 (1399)
Q Consensus 939 ~L~~L~l~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~ 1017 (1399)
+|+.|++++|. +..+|..+++|++|++++|.+.+ ++ .+ ++|+.|++++|. +..+|.. +++|++|++++|.
T Consensus 278 ~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~-l~~lp~~--~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 278 SLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNK-LIELPAL--PPRLERLIASFNH 348 (454)
T ss_dssp TCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSC
T ss_pred cCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCc-ccccccc--CCcCCEEECCCCc
Confidence 55555555554 23333333455555555555432 11 12 355555555532 2233321 3555555555554
Q ss_pred ccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCcccc
Q 036079 1018 ALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHI 1097 (1399)
Q Consensus 1018 ~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~ 1097 (1399)
++.+|. . +++|++|++++|+ +..+|. .+..+..|. .|+....+|. .+++|+.|++++|+..+ +
T Consensus 349 -l~~lp~-~----l~~L~~L~L~~N~-l~~l~~--ip~~l~~L~--~n~~~~~i~~-----~~~~L~~L~ls~N~l~~-~ 411 (454)
T 1jl5_A 349 -LAEVPE-L----PQNLKQLHVEYNP-LREFPD--IPESVEDLR--MNSHLAEVPE-----LPQNLKQLHVETNPLRE-F 411 (454)
T ss_dssp -CSCCCC-C----CTTCCEEECCSSC-CSSCCC--CCTTCCEEE--CCC-------------------------------
T ss_pred -cccccc-h----hhhccEEECCCCC-CCcCCC--ChHHHHhhh--hccccccccc-----ccCcCCEEECCCCcCCc-c
Confidence 334444 1 4455555555543 222221 122333322 2223333332 13678888888765332 2
Q ss_pred ccccccCccceeeecccc
Q 036079 1098 ARIQLAPSLKRLIINSCH 1115 (1399)
Q Consensus 1098 ~~~~~~~~L~~L~l~~c~ 1115 (1399)
+. ..++++.|.+.+|.
T Consensus 412 ~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 412 PD--IPESVEDLRMNSER 427 (454)
T ss_dssp ------------------
T ss_pred cc--chhhHhheeCcCcc
Confidence 21 12456667766653
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.9e-27 Score=296.37 Aligned_cols=437 Identities=18% Similarity=0.131 Sum_probs=233.3
Q ss_pred CcccEEEecCCcccccC-ccccCccccceeeccCcccccc-chhhhccccccEEEcCCccccccchhhhcccCcccEEEc
Q 036079 547 PRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRN 624 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 624 (1399)
++|++|+|++|.++.+| ..|.++++|++|+|++|.|+.+ |..|.++++|++|++++| .+..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEEC
Confidence 56666666666666653 4566666666666666666655 455666666666666664 34556655 5666666666
Q ss_pred CCCcccccC--CcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEe
Q 036079 625 SNVDSLEEM--PKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLL 702 (1399)
Q Consensus 625 ~~n~~~~~l--p~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 702 (1399)
++|. +..+ |..|+++++|++|++.+|.+.. .
T Consensus 129 s~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~--------------------------------------------- 161 (562)
T 3a79_B 129 SFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L--------------------------------------------- 161 (562)
T ss_dssp CSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-T---------------------------------------------
T ss_pred CCCC-ccccCchHhhcccCcccEEecCCCcccc-C---------------------------------------------
Confidence 6666 3333 3456666666666665443321 0
Q ss_pred eecCCCCchhHHHHHHhccCCCCCCCceEEEeecCC--C-CCCcccCcCCCcceeEEEeeCCCCCCCCC--CCCCCCccc
Q 036079 703 EWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGG--T-KFPNWLGESSFLKLLFLRFEGCGKCTSLP--SVGQLPLLK 777 (1399)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~-~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~ 777 (1399)
.+..+..+ +|+.|++++|.+ . ..|.++..... ....+++++|.....++ .+..+++|+
T Consensus 162 ---------------~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 224 (562)
T 3a79_B 162 ---------------DLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQ 224 (562)
T ss_dssp ---------------TTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred ---------------chhhhhhc-eeeEEEeecccccccccCcccccccCc-ceEEEEecCccchhhhhhhcccccceEE
Confidence 01112222 347778888776 3 33444432222 23355677776665555 456788888
Q ss_pred eeeeccccc----ceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCCC
Q 036079 778 HLEISRMDR----VKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPEC 853 (1399)
Q Consensus 778 ~L~Ls~~~~----~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~~ 853 (1399)
.|++++|.. .......+.+ .++|+.|.+.++......... . ......++|++|++++ +.++|.+|..
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~------l~~L~~L~L~~~~l~~~~~~~-~-~~~~~~~~L~~L~l~~-n~l~~~ip~~ 295 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTR------GPTLLNVTLQHIETTWKCSVK-L-FQFFWPRPVEYLNIYN-LTITERIDRE 295 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHS------CSSCEEEEEEEEEECHHHHHH-H-HHHHTTSSEEEEEEEE-EEECSCCCCC
T ss_pred EecccccccccchHHHHHHHHhc------cCcceEEEecCCcCcHHHHHH-H-HHhhhcccccEEEEec-cEeeccccch
Confidence 888887631 1111112222 567777776654321110000 0 0011234777777777 3566566654
Q ss_pred CCCcceEEecccCcccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeecccccccccccccc
Q 036079 854 LPLLEVLDIQCCGQLLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYLWWSETRL 933 (1399)
Q Consensus 854 l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L~l~~n~l 933 (1399)
+-. .....++.|+.+++..+.. .+++... ..
T Consensus 296 ~~~-------------~~~~~L~~L~~~~~~~~~~-~~p~~~~----------------------------------~~- 326 (562)
T 3a79_B 296 EFT-------------YSETALKSLMIEHVKNQVF-LFSKEAL----------------------------------YS- 326 (562)
T ss_dssp CCC-------------CCSCSCCEEEEEEEEECCC-SSCHHHH----------------------------------HH-
T ss_pred hhh-------------cccccchheehhhccccee-ecChhhh----------------------------------hh-
Confidence 300 0012333333333333331 0000000 00
Q ss_pred cccCCcCcEEEeecCCCCCCC-ccccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC----CccCCCcc
Q 036079 934 LQDVRSLNRLQISRCPQLLSL-PELQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP----EAALPSRL 1008 (1399)
Q Consensus 934 ~~~l~~L~~L~l~~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~----~~~~~~~L 1008 (1399)
+....+|+.|++++|...... +..+++|++|++++|.+.+..|..+..+++|+.|++++|. +..++ .+..+++|
T Consensus 327 ~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L 405 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSL 405 (562)
T ss_dssp HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTC
T ss_pred hhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCC
Confidence 001134555556555532221 1344566667777666666666666777777777777743 33322 24556677
Q ss_pred cEEEccCCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEee
Q 036079 1009 RTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNI 1088 (1399)
Q Consensus 1009 ~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L 1088 (1399)
++|++++|.....+|...+. .+++|++|++++|.....+|. ..+++|+.|++++ +.++.+|...+ .+++|+.|++
T Consensus 406 ~~L~l~~N~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~-~l~~~L~~L~L~~-N~l~~ip~~~~--~l~~L~~L~L 480 (562)
T 3a79_B 406 ETLDVSLNSLNSHAYDRTCA-WAESILVLNLSSNMLTGSVFR-CLPPKVKVLDLHN-NRIMSIPKDVT--HLQALQELNV 480 (562)
T ss_dssp CEEECTTSCCBSCCSSCCCC-CCTTCCEEECCSSCCCGGGGS-SCCTTCSEEECCS-SCCCCCCTTTT--SSCCCSEEEC
T ss_pred CEEECCCCcCCCccChhhhc-CcccCCEEECCCCCCCcchhh-hhcCcCCEEECCC-CcCcccChhhc--CCCCCCEEEC
Confidence 77777777644435554332 266777777777654333332 2225777777777 36666766553 5677777777
Q ss_pred cCCCCcccccc--ccccCccceeeecccc
Q 036079 1089 YNCNSLTHIAR--IQLAPSLKRLIINSCH 1115 (1399)
Q Consensus 1089 ~~c~~l~~~~~--~~~~~~L~~L~l~~c~ 1115 (1399)
++|. ++.+|. +..+++|+.|++++++
T Consensus 481 ~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 481 ASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 7653 445554 5666777777777654
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.9e-27 Score=303.71 Aligned_cols=125 Identities=23% Similarity=0.263 Sum_probs=106.2
Q ss_pred CCCCcchhhHHhhhcCCCCcccEEEecCCcccccC-ccccCccccceeeccCccccccch-hhhccccccEEEcCCcccc
Q 036079 529 NYEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQILPE-SINSLYNLHTILLENCHRL 606 (1399)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l 606 (1399)
++++|.++...+.+|.++++|++|+|++|.|+.+| .+|.++++|++|+|++|+|+.+|. .|.++++|++|+|++|. +
T Consensus 58 dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l 136 (635)
T 4g8a_A 58 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-L 136 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC-C
T ss_pred EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-C
Confidence 46778887655567999999999999999999995 579999999999999999999975 58999999999999964 5
Q ss_pred ccchh-hhcccCcccEEEcCCCcccc-cCCcccccccccCccceEEeccC
Q 036079 607 KKLCK-DMGNLIKLHHLRNSNVDSLE-EMPKGFGKLTCLLTLCTFVVGKD 654 (1399)
Q Consensus 607 ~~lp~-~i~~L~~L~~L~l~~n~~~~-~lp~~~~~L~~L~~L~l~~~~~~ 654 (1399)
..+|. .|+++++|++|++++|.+.. .+|..++.+++|++|++.+|.+.
T Consensus 137 ~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 66665 59999999999999998322 45677899999999998776553
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.2e-27 Score=286.78 Aligned_cols=156 Identities=27% Similarity=0.373 Sum_probs=93.5
Q ss_pred ccCCcCcEEEeecCCCCCCCccccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEEEcc
Q 036079 935 QDVRSLNRLQISRCPQLLSLPELQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTIDIE 1014 (1399)
Q Consensus 935 ~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls 1014 (1399)
..+++|+.|++++|. +..+|..+++|++|++++|.+. .+|. +..+++|+.|++++| .+..+|. .+++|++|+++
T Consensus 192 ~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N-~l~~l~~--~~~~L~~L~l~ 265 (454)
T 1jl5_A 192 QNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNN-LLKTLPD--LPPSLEALNVR 265 (454)
T ss_dssp TTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSS-CCSSCCS--CCTTCCEEECC
T ss_pred cCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCC-cCCcccc--cccccCEEECC
Confidence 344556666666655 3335555567777777777654 5663 777888888888875 3444553 34778888888
Q ss_pred CCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCc
Q 036079 1015 GCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSL 1094 (1399)
Q Consensus 1015 ~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l 1094 (1399)
+|. +..+|.. +++|+.|++++|. ++.++. .+++|+.|++++| .++.++. ..++|++|++++|. +
T Consensus 266 ~N~-l~~l~~~-----~~~L~~L~ls~N~-l~~l~~--~~~~L~~L~l~~N-~l~~i~~-----~~~~L~~L~Ls~N~-l 329 (454)
T 1jl5_A 266 DNY-LTDLPEL-----PQSLTFLDVSENI-FSGLSE--LPPNLYYLNASSN-EIRSLCD-----LPPSLEELNVSNNK-L 329 (454)
T ss_dssp SSC-CSCCCCC-----CTTCCEEECCSSC-CSEESC--CCTTCCEEECCSS-CCSEECC-----CCTTCCEEECCSSC-C
T ss_pred CCc-ccccCcc-----cCcCCEEECcCCc-cCcccC--cCCcCCEEECcCC-cCCcccC-----CcCcCCEEECCCCc-c
Confidence 876 5556543 4678888887765 444443 2367777777773 4554432 12467777777653 3
Q ss_pred cccccccccCccceeeeccc
Q 036079 1095 THIARIQLAPSLKRLIINSC 1114 (1399)
Q Consensus 1095 ~~~~~~~~~~~L~~L~l~~c 1114 (1399)
+.++.. +++|++|++++|
T Consensus 330 ~~lp~~--~~~L~~L~L~~N 347 (454)
T 1jl5_A 330 IELPAL--PPRLERLIASFN 347 (454)
T ss_dssp SCCCCC--CTTCCEEECCSS
T ss_pred cccccc--CCcCCEEECCCC
Confidence 333321 345555555443
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=3.4e-26 Score=285.13 Aligned_cols=425 Identities=16% Similarity=0.124 Sum_probs=238.3
Q ss_pred CCCCcchhhHHhhhcCCCCcccEEEecCCccccc-CccccCccccceeeccCccccccchhhhccccccEEEcCCccccc
Q 036079 529 NYEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLK 607 (1399)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~ 607 (1399)
++++|.+....+..|.++++|++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|.. .+++|++|++++|. +.
T Consensus 58 ~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~ 134 (562)
T 3a79_B 58 SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FD 134 (562)
T ss_dssp ECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CS
T ss_pred ECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-cc
Confidence 3566777766667899999999999999999988 78899999999999999999999987 89999999999975 54
Q ss_pred c--chhhhcccCcccEEEcCCCcccccCCccccccccc--CccceEEecc--CCCCChhcccCcc--cccCceEEeccCC
Q 036079 608 K--LCKDMGNLIKLHHLRNSNVDSLEEMPKGFGKLTCL--LTLCTFVVGK--DGGSGLRELKSLT--HLQGTLKISKLEN 679 (1399)
Q Consensus 608 ~--lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L--~~L~l~~~~~--~~~~~~~~L~~L~--~L~~~l~~~~l~~ 679 (1399)
. +|..|+++++|++|++++|. +.. ..+..+++| ++|++..|.. .. .....+..+. .+ .+.+...
T Consensus 135 ~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~-~~~~~l~~l~~~~l--~l~l~~n-- 206 (562)
T 3a79_B 135 VLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKG-GETESLQIPNTTVL--HLVFHPN-- 206 (562)
T ss_dssp BCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCS-SSCCEEEECCEEEE--EEEECSS--
T ss_pred ccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccc-cCcccccccCcceE--EEEecCc--
Confidence 4 45789999999999999998 433 346666666 9999988876 22 1222333322 22 1111111
Q ss_pred CCCcchhhhhhccCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCC-----CCCcccCcCCCccee
Q 036079 680 VKDVGDAREAQLNGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGT-----KFPNWLGESSFLKLL 754 (1399)
Q Consensus 680 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~~~~L~ 754 (1399)
..........+..+.+|+.++++++.... ..-...+..+..+++|+.+++.++.+. .++.+. ...+|+
T Consensus 207 -~~~~~~~~~~~~~l~~L~~L~l~~n~~~~---~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~---~~~~L~ 279 (562)
T 3a79_B 207 -SLFSVQVNMSVNALGHLQLSNIKLNDENC---QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF---WPRPVE 279 (562)
T ss_dssp -SCCCCCCEEEESSEEEEEEEEEECCSTTH---HHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH---TTSSEE
T ss_pred -cchhhhhhhcccccceEEEeccccccccc---chHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh---hccccc
Confidence 11111222345567778888887543111 111223334556677777777765543 122222 123677
Q ss_pred EEEeeCCCCCCCCC-CC-----CCCCccceeeecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcc
Q 036079 755 FLRFEGCGKCTSLP-SV-----GQLPLLKHLEISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQE 828 (1399)
Q Consensus 755 ~L~l~~~~~~~~l~-~l-----~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~ 828 (1399)
+|++++|.+.+.+| .+ ..++.|+.++++.+.. .++..... .
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~-------------------------------~ 326 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALY-------------------------------S 326 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHH-------------------------------H
T ss_pred EEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhh-------------------------------h
Confidence 77777666554444 22 3333333333333221 11100000 0
Q ss_pred cCCCCccceeeecCCcCccc-CCCCCCCCcceEEecccCc---ccccCCCCCccceEEEeCCCCccccCCCCCCCcccee
Q 036079 829 VDGFPKLRTLSLVCCSKLQG-TLPECLPLLEVLDIQCCGQ---LLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVI 904 (1399)
Q Consensus 829 ~~~~~~L~~L~L~~c~~l~~-~~p~~l~~L~~L~l~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 904 (1399)
....++|++|++++| .+.. .++..+++|++|++++|.. .+..+..+++|+.|++++|.+..++.
T Consensus 327 ~~~~~~L~~L~l~~n-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------- 394 (562)
T 3a79_B 327 VFAEMNIKMLSISDT-PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK----------- 394 (562)
T ss_dssp HHHTCCCSEEEEESS-CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH-----------
T ss_pred hhccCcceEEEccCC-CcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc-----------
Confidence 000133555555553 2221 1112333344444433311 22334444555555555544211000
Q ss_pred eccCCCCcceEEEeecccccccccccccccccCCcCcEEEeecCCCCCCCccccccccEEEEeecCCCCccch-hhccCC
Q 036079 905 FEKGLPKLEKVGIVNVRELTYLWWSETRLLQDVRSLNRLQISRCPQLLSLPELQCRLRFLELSYCEGLTRLPQ-ALLTLS 983 (1399)
Q Consensus 905 ~~~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~-~~~~l~ 983 (1399)
....+..+ ++|++|++++|.+.+.+|. .+..++
T Consensus 395 -------------------------~~~~~~~l---------------------~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 395 -------------------------VALMTKNM---------------------SSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp -------------------------HHHTTTTC---------------------TTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred -------------------------chhhhcCC---------------------CCCCEEECCCCcCCCccChhhhcCcc
Confidence 00002233 3444555555554443333 355566
Q ss_pred CccEEEEccCCCccccCCccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCC--CCCCCCCcEEE
Q 036079 984 SLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE--VSLPSRLRTIE 1061 (1399)
Q Consensus 984 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~--~~~~~~L~~L~ 1061 (1399)
+|+.|++++|......+.. .+++|++|++++|. ++.+|..+.. +++|++|++++|. ++.+|. +..+++|+.|+
T Consensus 429 ~L~~L~l~~n~l~~~~~~~-l~~~L~~L~L~~N~-l~~ip~~~~~--l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRC-LPPKVKVLDLHNNR-IMSIPKDVTH--LQALQELNVASNQ-LKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp TCCEEECCSSCCCGGGGSS-CCTTCSEEECCSSC-CCCCCTTTTS--SCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEE
T ss_pred cCCEEECCCCCCCcchhhh-hcCcCCEEECCCCc-CcccChhhcC--CCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEE
Confidence 6777777665543333321 12577777777775 5667766553 7777777777765 445654 45567788888
Q ss_pred ecCCCC
Q 036079 1062 IEGCYA 1067 (1399)
Q Consensus 1062 l~~c~~ 1067 (1399)
+++|+-
T Consensus 504 l~~N~~ 509 (562)
T 3a79_B 504 LHDNPW 509 (562)
T ss_dssp CCSCCB
T ss_pred ecCCCc
Confidence 887543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.5e-24 Score=263.16 Aligned_cols=103 Identities=18% Similarity=0.266 Sum_probs=77.5
Q ss_pred CCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcC
Q 036079 546 LPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNS 625 (1399)
Q Consensus 546 l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 625 (1399)
+++|+.|+++++.+..+|. +..+++|++|+|++|.++.+|. +..+++|++|++++| .+..+|. ++++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECC
Confidence 4567888888888887764 7778888888888888887776 888888888888875 4555555 8888888888888
Q ss_pred CCcccccCCcccccccccCccceEEeccC
Q 036079 626 NVDSLEEMPKGFGKLTCLLTLCTFVVGKD 654 (1399)
Q Consensus 626 ~n~~~~~lp~~~~~L~~L~~L~l~~~~~~ 654 (1399)
+|. +..+|. ++++++|++|++.++...
T Consensus 121 ~n~-l~~~~~-~~~l~~L~~L~l~~n~l~ 147 (466)
T 1o6v_A 121 NNQ-ITDIDP-LKNLTNLNRLELSSNTIS 147 (466)
T ss_dssp SSC-CCCCGG-GTTCTTCSEEEEEEEEEC
T ss_pred CCC-CCCChH-HcCCCCCCEEECCCCccC
Confidence 887 556654 777777777777666543
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.4e-24 Score=260.36 Aligned_cols=101 Identities=20% Similarity=0.178 Sum_probs=84.2
Q ss_pred hcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccE
Q 036079 542 MLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHH 621 (1399)
Q Consensus 542 ~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 621 (1399)
.+.++++|++|++++|.++.+| .|+.+++|++|+|++|.++.+| ++.+++|++|++++|. +..+| ++.+++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCE
Confidence 4667889999999999999887 6899999999999999999886 8899999999999964 56665 889999999
Q ss_pred EEcCCCcccccCCcccccccccCccceEEe
Q 036079 622 LRNSNVDSLEEMPKGFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 622 L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~ 651 (1399)
|++++|. +..+| ++.+++|++|++.+|
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLNCARN 137 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEECTTS
T ss_pred EECCCCc-CCeec--CCCCCcCCEEECCCC
Confidence 9999998 55565 777777777766443
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=7e-24 Score=254.20 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=63.3
Q ss_pred CccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcCCCcccccCCcccccccc
Q 036079 563 PNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNVDSLEEMPKGFGKLTC 642 (1399)
Q Consensus 563 p~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~ 642 (1399)
+..++++++|++|++++|.++.+| .++.+++|++|++++| .+..+| ++.+++|++|++++|. +..+| ++.+++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCc
Confidence 456788999999999999999887 6899999999999986 466665 8889999999999887 55554 566666
Q ss_pred cCccceEE
Q 036079 643 LLTLCTFV 650 (1399)
Q Consensus 643 L~~L~l~~ 650 (1399)
|++|++.+
T Consensus 108 L~~L~L~~ 115 (457)
T 3bz5_A 108 LTYLNCDT 115 (457)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 66665533
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2e-23 Score=253.74 Aligned_cols=372 Identities=13% Similarity=0.066 Sum_probs=224.5
Q ss_pred EEeecCCCCCCCccccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC--CccCCCcccEEEccCCCccc
Q 036079 943 LQISRCPQLLSLPELQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP--EAALPSRLRTIDIEGCNALK 1020 (1399)
Q Consensus 943 L~l~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~Ls~~~~l~ 1020 (1399)
++.+++ .+..+|..+++|++|++++|.+.+..|..+..+++|++|++++|.....++ .+..+++|++|++++|....
T Consensus 15 ~~c~~~-~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 15 AICINR-GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp EECCSS-CCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred cCcCCC-CcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence 444444 367777777889999999999877778889999999999999987655554 36778999999999998544
Q ss_pred cCccccccCccCCcceEEecCCCCccccC-C--CCCCCCCcEEEecCCCCCccc-chhhhhcCCCCccEEeecCCCCccc
Q 036079 1021 SLPEAWMHNSYSSLQSLKIRYCKSLVSFP-E--VSLPSRLRTIEIEGCYALKCL-PEAWMENSSTSLESLNIYNCNSLTH 1096 (1399)
Q Consensus 1021 ~~~~~~~~~~l~~L~~L~ls~~~~l~~~~-~--~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~l~~L~~L~L~~c~~l~~ 1096 (1399)
..|..+.. +++|++|++++|.....++ . +..+++|++|++++| .++.+ |..++ ..+++|++|++++|.....
T Consensus 94 ~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 94 LETGAFNG--LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFF-LNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp ECTTTTTT--CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGG-GGCTTCCEEECTTCCBSCC
T ss_pred cChhhccC--cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCccccc-CCCCcccEEeCCCCccccc
Confidence 45655544 8999999999987543332 2 566789999999995 55555 44323 5689999999998764443
Q ss_pred ccc-cccc--CccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCC---Ccc
Q 036079 1097 IAR-IQLA--PSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNG---NLP 1170 (1399)
Q Consensus 1097 ~~~-~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~ 1170 (1399)
.+. +..+ ++|+.|+++++.-. .+.... .... ........++|+.|++++|......+... ...
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~-~~~~~~---~~~~-------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 238 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQ-DMNEYW---LGWE-------KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCT-TCSTTC---TTHH-------HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTT
T ss_pred ChhhhhccccccccccccccCccc-ccchhh---cccc-------ccccccccceeeeEecCCCcccccchhhhhccccc
Confidence 332 3333 67888888776421 111000 0000 00001123567777777774432222110 011
Q ss_pred ccCceEEeeccCCcccccc-------------cccccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCC
Q 036079 1171 QALKCLRVRFCSKLESFAE-------------SLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEG 1237 (1399)
Q Consensus 1171 ~~L~~L~l~~c~~l~~~~~-------------~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~ 1237 (1399)
.+|+.|++++|........ ....++|++|++++|...+..|..+..+++|++|++++|......|..
T Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 318 (455)
T 3v47_A 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318 (455)
T ss_dssp CCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred cceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence 4577777776643332111 011245666666665555555555666666666666665433333444
Q ss_pred CCCCCCccEEEecCCcCcccCccccCCCCCccEEEecCCCCCcccccccccccccCcccccccccCCCCcccCCCCCCCc
Q 036079 1238 GLPYAKLTKLEILDCENLKALPNCMHNLTSLLCLEIGLCPRLICKPLFEWGLNRFTSLKRLEICEGCPDLVSSPRFPASL 1317 (1399)
Q Consensus 1238 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~~~~~~~~L 1317 (1399)
+..+++|++|++++|......|..++.+++|++|++++|......|. .+. .+++|
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~----------------------~l~~L 373 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ---SFL----------------------GLPNL 373 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT---TTT----------------------TCTTC
T ss_pred hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh---hcc----------------------ccccc
Confidence 45556666666666544333344556666666666665532211111 122 34567
Q ss_pred cEEecCCCCCccccccCC-CCCCCCCeeeccCCCCCCcCC
Q 036079 1318 TVLRISSMPNLICLSSIG-ENLTSLETLDLHFCPKLKYFP 1356 (1399)
Q Consensus 1318 ~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~~~ 1356 (1399)
++|++++ +.++.+|... ..+++|++|++++|+--...|
T Consensus 374 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 374 KELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cEEECCC-CccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7777777 4577777654 788889999998876555444
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=6.1e-23 Score=249.40 Aligned_cols=375 Identities=15% Similarity=0.079 Sum_probs=162.6
Q ss_pred eeecCCcCcccCCCCCCCCcceEEecccCc---ccccCCCCCccceEEEeCCCCcc-ccCCCCCCCccceeeccCCCCcc
Q 036079 838 LSLVCCSKLQGTLPECLPLLEVLDIQCCGQ---LLVTIKYLPALSGLQINGCKGVV-FSSPIVPSSNQVVIFEKGLPKLE 913 (1399)
Q Consensus 838 L~L~~c~~l~~~~p~~l~~L~~L~l~~~~~---~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~~~~L~ 913 (1399)
++.++ ..++ .+|.-.++|++|++++|.. .+..+..+++|++|++++|.... ++.
T Consensus 15 ~~c~~-~~l~-~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~-------------------- 72 (455)
T 3v47_A 15 AICIN-RGLH-QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-------------------- 72 (455)
T ss_dssp EECCS-SCCS-SCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT--------------------
T ss_pred cCcCC-CCcc-cCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECc--------------------
Confidence 44444 3454 5565345667777766632 24556677777777777776321 110
Q ss_pred eEEEeecccccccccccccccccCCcCcEEEeecCCCCCCCcc---ccccccEEEEeecCCCCccchh--hccCCCccEE
Q 036079 914 KVGIVNVRELTYLWWSETRLLQDVRSLNRLQISRCPQLLSLPE---LQCRLRFLELSYCEGLTRLPQA--LLTLSSLTEM 988 (1399)
Q Consensus 914 ~l~l~~~~~L~~L~l~~n~l~~~l~~L~~L~l~~~~~~~~~~~---~~~~L~~L~ls~n~~~~~~~~~--~~~l~~L~~L 988 (1399)
..+..+++|++|++++|......|. .+++|++|++++|.+.+..+.. +..+++|++|
T Consensus 73 ------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 134 (455)
T 3v47_A 73 ------------------NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134 (455)
T ss_dssp ------------------TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred ------------------ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEE
Confidence 0134455666666666653333232 2345556666665554433333 5556666666
Q ss_pred EEccCCCccccCC--ccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCC
Q 036079 989 RIAHCTSLISFPE--AALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCY 1066 (1399)
Q Consensus 989 ~l~~~~~l~~~~~--~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~ 1066 (1399)
++++|......|. +..+++|++|++++|......+..+..-...+|+.|++++|. +..++......
T Consensus 135 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~----------- 202 (455)
T 3v47_A 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGW----------- 202 (455)
T ss_dssp ECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTH-----------
T ss_pred ECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc-ccccchhhccc-----------
Confidence 6666443333232 344555666666665533333333222112455555555544 22222110000
Q ss_pred CCcccchhhhhcCCCCccEEeecCCCCcccccc----ccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCC
Q 036079 1067 ALKCLPEAWMENSSTSLESLNIYNCNSLTHIAR----IQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSE 1142 (1399)
Q Consensus 1067 ~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~----~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 1142 (1399)
..... ...+++|++|++++|......+. ....++|+.|++++|........ .............
T Consensus 203 ---~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~~~~~~~~~~~~~ 270 (455)
T 3v47_A 203 ---EKCGN--PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-------HTNFKDPDNFTFK 270 (455)
T ss_dssp ---HHHCC--TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-------CCSSCCCCTTTTG
T ss_pred ---ccccc--ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-------hhhhccCcccccc
Confidence 00000 01224444444444433222221 11124455555554432211100 0000011111111
Q ss_pred CCCccccceeeecccccccccccCCCccccCceEEeeccCCcccccc-cccccccccccccccccccccCCcccCCCCCc
Q 036079 1143 NELPATLEHLEVSYCLNLAFLSRNGNLPQALKCLRVRFCSKLESFAE-SLDNTSLEEITISWLENLKILPGGLHNLHHLQ 1221 (1399)
Q Consensus 1143 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 1221 (1399)
....++|+.|++++|......+......++|+.|++++|......+. +..+++|++|++++|...+..|..+..+++|+
T Consensus 271 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 11124566666665544433333333334555555555543322221 22445555555555543333344455555555
Q ss_pred eEeeccCCCccccCCCCCCCCCccEEEecCCcCcccCcc-ccCCCCCccEEEecCCC
Q 036079 1222 EIRIEQCPNLESFPEGGLPYAKLTKLEILDCENLKALPN-CMHNLTSLLCLEIGLCP 1277 (1399)
Q Consensus 1222 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 1277 (1399)
+|++++|......|..+..+++|++|++++|.. +.+|. .+..+++|++|++++|+
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhhccccccccEEECCCCcc-ccCCHhHhccCCcccEEEccCCC
Confidence 555555443222244444455555555555432 22332 34555555555555543
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.3e-22 Score=246.04 Aligned_cols=341 Identities=18% Similarity=0.197 Sum_probs=190.2
Q ss_pred cCCcCcEEEeecCCCCCCCcc--ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEEEc
Q 036079 936 DVRSLNRLQISRCPQLLSLPE--LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTIDI 1013 (1399)
Q Consensus 936 ~l~~L~~L~l~~~~~~~~~~~--~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~L 1013 (1399)
.+++++.|++++|. +..+|. .+++|++|++++|.+.+..+ +..+++|++|++++|.. ..++.+..+++|++|++
T Consensus 44 ~l~~l~~L~l~~~~-i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CCCGGGTTCTTCCEEEC
T ss_pred HhccccEEecCCCC-CccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcc-ccChhhcCCCCCCEEEC
Confidence 35567777777765 344554 45778888888877554433 77788888888887543 33444667788888888
Q ss_pred cCCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCC
Q 036079 1014 EGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNS 1093 (1399)
Q Consensus 1014 s~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~ 1093 (1399)
++|. ++.++. +. .+++|++|++++|. +..++.+..+++|++|++++ .+..++. + ..+++|+.|++++|.
T Consensus 120 ~~n~-l~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~--~~~~~~~-~--~~l~~L~~L~l~~n~- 188 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LK--NLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGN--QVTDLKP-L--ANLTTLERLDISSNK- 188 (466)
T ss_dssp CSSC-CCCCGG-GT--TCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEE--SCCCCGG-G--TTCTTCCEEECCSSC-
T ss_pred CCCC-CCCChH-Hc--CCCCCCEEECCCCc-cCCChhhccCCcccEeecCC--cccCchh-h--ccCCCCCEEECcCCc-
Confidence 8876 555554 22 37788888888765 55566666777888888863 3444443 2 567888888888764
Q ss_pred ccccccccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCccccC
Q 036079 1094 LTHIARIQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQAL 1173 (1399)
Q Consensus 1094 l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L 1173 (1399)
++.++.+..+++|++|++++|.- ..+. . ...+++|+.|++++|..
T Consensus 189 l~~~~~l~~l~~L~~L~l~~n~l-~~~~----------------~----~~~l~~L~~L~l~~n~l-------------- 233 (466)
T 1o6v_A 189 VSDISVLAKLTNLESLIATNNQI-SDIT----------------P----LGILTNLDELSLNGNQL-------------- 233 (466)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCC-CCCG----------------G----GGGCTTCCEEECCSSCC--------------
T ss_pred CCCChhhccCCCCCEEEecCCcc-cccc----------------c----ccccCCCCEEECCCCCc--------------
Confidence 55556667777777777776531 1110 0 11234455555555422
Q ss_pred ceEEeeccCCcccccccccccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCc
Q 036079 1174 KCLRVRFCSKLESFAESLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCE 1253 (1399)
Q Consensus 1174 ~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 1253 (1399)
..++....+++|++|++++|...+..| +..+++|++|++++|. +..++. +..+++|+.|++++|.
T Consensus 234 -----------~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 234 -----------KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQ 298 (466)
T ss_dssp -----------CCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC
T ss_pred -----------ccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCc
Confidence 122222334445555555443222211 4445555555555543 333332 3344555555555543
Q ss_pred CcccCccccCCCCCccEEEecCCCCCcccccccccccccCcccccccccCCCCcccCCCCCCCccEEecCCCCCcccccc
Q 036079 1254 NLKALPNCMHNLTSLLCLEIGLCPRLICKPLFEWGLNRFTSLKRLEICEGCPDLVSSPRFPASLTVLRISSMPNLICLSS 1333 (1399)
Q Consensus 1254 ~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 1333 (1399)
. ..++. +..+++|+.|++++|.... .+ .+..+++|+.|+++++...-......+++|+.|++++|. +..++.
T Consensus 299 l-~~~~~-~~~l~~L~~L~L~~n~l~~-~~----~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~ 370 (466)
T 1o6v_A 299 L-EDISP-ISNLKNLTYLTLYFNNISD-IS----PVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ-ISDLTP 370 (466)
T ss_dssp C-SCCGG-GGGCTTCSEEECCSSCCSC-CG----GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCBCGG
T ss_pred c-cCchh-hcCCCCCCEEECcCCcCCC-ch----hhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCc-cCccch
Confidence 2 22322 4455555555555543222 11 134455555555544321111112235667777777754 444443
Q ss_pred CCCCCCCCCeeeccCCC
Q 036079 1334 IGENLTSLETLDLHFCP 1350 (1399)
Q Consensus 1334 ~~~~l~~L~~L~l~~c~ 1350 (1399)
...+++|+.|++++|+
T Consensus 371 -~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 371 -LANLTRITQLGLNDQA 386 (466)
T ss_dssp -GTTCTTCCEEECCCEE
T ss_pred -hhcCCCCCEEeccCCc
Confidence 6778888888888864
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.6e-22 Score=235.74 Aligned_cols=101 Identities=20% Similarity=0.355 Sum_probs=79.9
Q ss_pred cCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEE
Q 036079 543 LLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHL 622 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 622 (1399)
+..+++|+.|++++|.+..+|. +..+++|++|++++|.++.+|. +..+++|++|++++| .+..+| .+..+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEE
Confidence 3456788999999998888865 8888999999999999988877 888999999999986 566665 58889999999
Q ss_pred EcCCCcccccCCcccccccccCccceE
Q 036079 623 RNSNVDSLEEMPKGFGKLTCLLTLCTF 649 (1399)
Q Consensus 623 ~l~~n~~~~~lp~~~~~L~~L~~L~l~ 649 (1399)
++++|. +..+|. +..+++|++|++.
T Consensus 116 ~l~~n~-i~~~~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 116 YLNEDN-ISDISP-LANLTKMYSLNLG 140 (347)
T ss_dssp ECTTSC-CCCCGG-GTTCTTCCEEECT
T ss_pred ECcCCc-ccCchh-hccCCceeEEECC
Confidence 998887 555554 6666666666553
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=3.5e-22 Score=236.66 Aligned_cols=299 Identities=16% Similarity=0.172 Sum_probs=179.4
Q ss_pred CCcccEEEecCCcccccCcc-ccCccccceeeccCccccccch-hhhccccccEEEcCCccccccchhhhcccCcccEEE
Q 036079 546 LPRLRVFSLHGYCVSKLPNE-IGNLKHLRFLNLSGTEIQILPE-SINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLR 623 (1399)
Q Consensus 546 l~~Lr~L~L~~n~i~~lp~~-~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 623 (1399)
++++++|++++|.+..+|.. |.++++|++|+|++|.|+.+|. .|..+++|++|++++|......|..|+++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 56788888888888888654 5778888888888888886654 677888888888887654443445577777777777
Q ss_pred cCCCcccccCCcc-cccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEe
Q 036079 624 NSNVDSLEEMPKG-FGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLL 702 (1399)
Q Consensus 624 l~~n~~~~~lp~~-~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 702 (1399)
+++|. +..+|.. |++++
T Consensus 124 L~~n~-l~~l~~~~~~~l~------------------------------------------------------------- 141 (390)
T 3o6n_A 124 LERND-LSSLPRGIFHNTP------------------------------------------------------------- 141 (390)
T ss_dssp CCSSC-CCCCCTTTTTTCT-------------------------------------------------------------
T ss_pred CCCCc-cCcCCHHHhcCCC-------------------------------------------------------------
Confidence 77776 4444432 22222
Q ss_pred eecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceeee
Q 036079 703 EWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLEI 781 (1399)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L 781 (1399)
+|+.|++++|.+....+ .+..+++|++|++
T Consensus 142 -------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 142 -------------------------------------------------KLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp -------------------------------------------------TCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred -------------------------------------------------CCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 23333333333222222 3566777888888
Q ss_pred cccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCCCCCCcceEE
Q 036079 782 SRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPECLPLLEVLD 861 (1399)
Q Consensus 782 s~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~~l~~L~~L~ 861 (1399)
++|..... ..+.+++|+.|+++++ .+++ +
T Consensus 173 ~~n~l~~~--------------------------------------~~~~l~~L~~L~l~~n-~l~~-~----------- 201 (390)
T 3o6n_A 173 SSNRLTHV--------------------------------------DLSLIPSLFHANVSYN-LLST-L----------- 201 (390)
T ss_dssp CSSCCSBC--------------------------------------CGGGCTTCSEEECCSS-CCSE-E-----------
T ss_pred CCCcCCcc--------------------------------------ccccccccceeecccc-cccc-c-----------
Confidence 77642211 0223566667776663 3331 1
Q ss_pred ecccCcccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeecccccccccccccccccCCcCc
Q 036079 862 IQCCGQLLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYLWWSETRLLQDVRSLN 941 (1399)
Q Consensus 862 l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~l~~L~ 941 (1399)
...++|+.|++++|.+..+++ ..+++|+
T Consensus 202 -----------~~~~~L~~L~l~~n~l~~~~~-----------------------------------------~~~~~L~ 229 (390)
T 3o6n_A 202 -----------AIPIAVEELDASHNSINVVRG-----------------------------------------PVNVELT 229 (390)
T ss_dssp -----------ECCSSCSEEECCSSCCCEEEC-----------------------------------------CCCSSCC
T ss_pred -----------CCCCcceEEECCCCeeeeccc-----------------------------------------ccccccc
Confidence 112344555555554222111 1123455
Q ss_pred EEEeecCCCCCCCcc--ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC-CccCCCcccEEEccCCCc
Q 036079 942 RLQISRCPQLLSLPE--LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP-EAALPSRLRTIDIEGCNA 1018 (1399)
Q Consensus 942 ~L~l~~~~~~~~~~~--~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~Ls~~~~ 1018 (1399)
.|++++|... ..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|. +..++ ....+++|++|++++|.
T Consensus 230 ~L~l~~n~l~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~- 306 (390)
T 3o6n_A 230 ILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH- 306 (390)
T ss_dssp EEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-
T ss_pred EEECCCCCCc-ccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-
Confidence 5555555422 2222 23567777777777666667778888888888888854 34444 34457788888888886
Q ss_pred cccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCC
Q 036079 1019 LKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGC 1065 (1399)
Q Consensus 1019 l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c 1065 (1399)
+..+|..+.. +++|+.|++++|+ ++.++ ...+++|+.|++++|
T Consensus 307 l~~~~~~~~~--l~~L~~L~L~~N~-i~~~~-~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 307 LLHVERNQPQ--FDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCCCGGGHHH--HTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSS
T ss_pred ceecCccccc--cCcCCEEECCCCc-cceeC-chhhccCCEEEcCCC
Confidence 5666665543 7788888888765 44443 445566777777663
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.6e-22 Score=246.99 Aligned_cols=104 Identities=25% Similarity=0.267 Sum_probs=73.7
Q ss_pred CcccEEEecCCccccc-CccccCccccceeeccCcccccc-chhhhccccccEEEcCCccccccchh-hhcccCcccEEE
Q 036079 547 PRLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKKLCK-DMGNLIKLHHLR 623 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 623 (1399)
+++++|+|++|.++.+ |..|.++++|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|. .|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 4677888888888776 56777888888888888887755 667778888888888875 4555554 367788888888
Q ss_pred cCCCcccccCCcccccccccCccceEEe
Q 036079 624 NSNVDSLEEMPKGFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 624 l~~n~~~~~lp~~~~~L~~L~~L~l~~~ 651 (1399)
+++|.+....|..|..+++|++|++.+|
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred CCCCccccCChhHccccccCCEEECCCC
Confidence 8877744444555666666666665433
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=9.1e-22 Score=229.35 Aligned_cols=301 Identities=14% Similarity=0.165 Sum_probs=200.8
Q ss_pred ccCCcCcEEEeecCCCCCCCcc--ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEEE
Q 036079 935 QDVRSLNRLQISRCPQLLSLPE--LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTID 1012 (1399)
Q Consensus 935 ~~l~~L~~L~l~~~~~~~~~~~--~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 1012 (1399)
..+++|+.|++++|. +..++. .+++|++|++++|.+.+ ++. +..+++|++|++++| .+..++.+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~-i~~~~~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEK-VASIQGIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSC-CCCCTTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCc-cccchhhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEE
Confidence 456777888888776 344443 45788888888887554 343 778888888888886 555566677788888888
Q ss_pred ccCCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCC
Q 036079 1013 IEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCN 1092 (1399)
Q Consensus 1013 Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~ 1092 (1399)
+++|. +..++. +. .+++|+.|++++|.....++.+..+++|++|++++| .++.++. + ..+++|++|++++|
T Consensus 117 l~~n~-i~~~~~-~~--~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~--~~l~~L~~L~l~~n- 187 (347)
T 4fmz_A 117 LNEDN-ISDISP-LA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP-I--ANLTDLYSLSLNYN- 187 (347)
T ss_dssp CTTSC-CCCCGG-GT--TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG-G--GGCTTCSEEECTTS-
T ss_pred CcCCc-ccCchh-hc--cCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh-h--ccCCCCCEEEccCC-
Confidence 88887 555555 22 378888888888877777777777788888888884 4555554 1 46788888888876
Q ss_pred CccccccccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCcccc
Q 036079 1093 SLTHIARIQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQA 1172 (1399)
Q Consensus 1093 ~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 1172 (1399)
.++.++.+..+++|+.|++++|. +..+. . ...++ +
T Consensus 188 ~l~~~~~~~~l~~L~~L~l~~n~-l~~~~----------------~----~~~~~------------------------~ 222 (347)
T 4fmz_A 188 QIEDISPLASLTSLHYFTAYVNQ-ITDIT----------------P----VANMT------------------------R 222 (347)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSC-CCCCG----------------G----GGGCT------------------------T
T ss_pred cccccccccCCCccceeecccCC-CCCCc----------------h----hhcCC------------------------c
Confidence 34555556777777777777652 11110 0 11123 4
Q ss_pred CceEEeeccCCcccccccccccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCC
Q 036079 1173 LKCLRVRFCSKLESFAESLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDC 1252 (1399)
Q Consensus 1173 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 1252 (1399)
|+.|++++|. +..++....+++|++|++++|. ++.++ .+..+++|++|++++|. +..++ .+..+++|+.|++++|
T Consensus 223 L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 223 LNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQ-ISDIN-AVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSS
T ss_pred CCEEEccCCc-cCCCcchhcCCCCCEEECCCCc-cCCCh-hHhcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCC
Confidence 5555555543 2223334456677777777763 33343 46778888888888874 55554 3456688888888888
Q ss_pred cCcccCccccCCCCCccEEEecCCCCCcccccccccccccCcccccccccC
Q 036079 1253 ENLKALPNCMHNLTSLLCLEIGLCPRLICKPLFEWGLNRFTSLKRLEICEG 1303 (1399)
Q Consensus 1253 ~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~l~~l~~L~~L~l~~~ 1303 (1399)
......|..++.+++|++|++++|+. ...+ .+..+++|+.|+++++
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~----~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHI-TDIR----PLASLSKMDSADFANQ 343 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSC-CCCG----GGGGCTTCSEESSSCC
T ss_pred cCCCcChhHhhccccCCEEEccCCcc-cccc----Chhhhhccceeehhhh
Confidence 66656666778888888888888763 3333 2667788888888664
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.6e-21 Score=242.03 Aligned_cols=102 Identities=15% Similarity=0.210 Sum_probs=68.9
Q ss_pred cccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC-CccCCCcccEEEccCCCccccCccccccCccCCcce
Q 036079 958 QCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP-EAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQS 1036 (1399)
Q Consensus 958 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~ 1036 (1399)
+++|++|++++|.+.+..|..+..+++|+.|++++|.. ..+| ....+++|++|+|++|. +..+|..+.. +++|+.
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~--l~~L~~ 328 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQ--FDRLEN 328 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC-CEEECSSSCCTTCCEEECCSSC-CCCCGGGHHH--HTTCSE
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC-CCCCcccccCCCCcEEECCCCC-CCccCccccc--CCCCCE
Confidence 35666777777776667777888888888888888543 3444 34457888888888887 5567766544 788888
Q ss_pred EEecCCCCccccCCCCCCCCCcEEEecCC
Q 036079 1037 LKIRYCKSLVSFPEVSLPSRLRTIEIEGC 1065 (1399)
Q Consensus 1037 L~ls~~~~l~~~~~~~~~~~L~~L~l~~c 1065 (1399)
|++++|+ +..++ ...+++|+.|++++|
T Consensus 329 L~L~~N~-l~~~~-~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 329 LYLDHNS-IVTLK-LSTHHTLKNLTLSHN 355 (597)
T ss_dssp EECCSSC-CCCCC-CCTTCCCSEEECCSS
T ss_pred EECCCCC-CCCcC-hhhcCCCCEEEeeCC
Confidence 8888865 33333 334456666666663
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=2.4e-20 Score=227.61 Aligned_cols=310 Identities=20% Similarity=0.197 Sum_probs=201.5
Q ss_pred EEEeecCCCCCCCcc-ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC-CccCCCcccEEEccCCCcc
Q 036079 942 RLQISRCPQLLSLPE-LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP-EAALPSRLRTIDIEGCNAL 1019 (1399)
Q Consensus 942 ~L~l~~~~~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~Ls~~~~l 1019 (1399)
.++.+++. +..+|. .+++++.|++++|.+.+..+..|..+++|++|++++|......| .+..+++|++|++++|. +
T Consensus 15 ~v~c~~~~-l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l 92 (477)
T 2id5_A 15 AVLCHRKR-FVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-L 92 (477)
T ss_dssp EEECCSCC-CSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred EEEeCCCC-cCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-C
Confidence 34444333 455555 44677777777777666666677777788888887764333323 35667778888887776 5
Q ss_pred ccCccccccCccCCcceEEecCCCCccccC-CCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCccccc
Q 036079 1020 KSLPEAWMHNSYSSLQSLKIRYCKSLVSFP-EVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHIA 1098 (1399)
Q Consensus 1020 ~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~ 1098 (1399)
+.+|...+.. +++|++|++++|......+ .+..+++|++|++++ +.++.++...+ ..+++|++|++++|. ++.++
T Consensus 93 ~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~ 168 (477)
T 2id5_A 93 KLIPLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAF-SGLNSLEQLTLEKCN-LTSIP 168 (477)
T ss_dssp CSCCTTSSTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSS-TTCTTCCEEEEESCC-CSSCC
T ss_pred CccCcccccC-CCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhc-cCCCCCCEEECCCCc-CcccC
Confidence 5666543322 7778888887765433333 245567778888877 45555544333 457778888887763 34444
Q ss_pred c--ccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCccccCceE
Q 036079 1099 R--IQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQALKCL 1176 (1399)
Q Consensus 1099 ~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 1176 (1399)
. +..+++|+.|+++++.- ..+. +.....+++|+.|++++|..+..++.......+|+.|
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i-~~~~------------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNI-NAIR------------------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCC-CEEC------------------TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred hhHhcccCCCcEEeCCCCcC-cEeC------------------hhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence 2 56677777777776531 1111 0111234567778887777666655444444578888
Q ss_pred EeeccCCcccccc--cccccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcC
Q 036079 1177 RVRFCSKLESFAE--SLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCEN 1254 (1399)
Q Consensus 1177 ~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 1254 (1399)
++++|. +..++. ...+++|++|++++|...+..+..+..+++|++|++++|......|..+..+++|+.|++++|..
T Consensus 230 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 230 SITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp EEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred ECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence 888874 444542 44678899999998875555556688889999999998765444466677788999999988754
Q ss_pred cccCcc-ccCCCCCccEEEecCCCC
Q 036079 1255 LKALPN-CMHNLTSLLCLEIGLCPR 1278 (1399)
Q Consensus 1255 l~~lp~-~~~~l~~L~~L~l~~c~~ 1278 (1399)
+.+|. .+..+++|++|++++++-
T Consensus 309 -~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 309 -TTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp -SCCCGGGBSCGGGCCEEECCSSCE
T ss_pred -ceeCHhHcCCCcccCEEEccCCCc
Confidence 44544 578889999999988753
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1.2e-20 Score=223.45 Aligned_cols=280 Identities=16% Similarity=0.154 Sum_probs=159.7
Q ss_pred CCcCcEEEeecCCCCCCCcc----ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCC-ccCCCcccEE
Q 036079 937 VRSLNRLQISRCPQLLSLPE----LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPE-AALPSRLRTI 1011 (1399)
Q Consensus 937 l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L 1011 (1399)
+++++.+++++|. +..+|. .+++|++|++++|.+.+..+..+..+++|++|++++|......+. +..+++|++|
T Consensus 44 l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4566666666654 344443 235566666666665444444566666666666666433222222 3445566666
Q ss_pred EccCCCccccCccccccCccCCcceEEecCCCCccccCC-CCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecC
Q 036079 1012 DIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE-VSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYN 1090 (1399)
Q Consensus 1012 ~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~ 1090 (1399)
++++|. ++.+|...+.. +++|++|++++|......+. +..+++|++|++++ +.++.++. ..+++|+.|++++
T Consensus 123 ~L~~n~-l~~l~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~----~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHN-TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVDL----SLIPSLFHANVSY 195 (390)
T ss_dssp ECCSSC-CCCCCTTTTTT-CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCCG----GGCTTCSEEECCS
T ss_pred ECCCCc-cCcCCHHHhcC-CCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCcccc----ccccccceeeccc
Confidence 666654 44455443221 55666666665542222121 34445555555555 34444432 2345555555555
Q ss_pred CCCccccccccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCcc
Q 036079 1091 CNSLTHIARIQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLP 1170 (1399)
Q Consensus 1091 c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 1170 (1399)
|. ++. +...++ |+.|+++++..... + ...+
T Consensus 196 n~-l~~---~~~~~~-------------------------------------------L~~L~l~~n~l~~~-~--~~~~ 225 (390)
T 3o6n_A 196 NL-LST---LAIPIA-------------------------------------------VEELDASHNSINVV-R--GPVN 225 (390)
T ss_dssp SC-CSE---EECCSS-------------------------------------------CSEEECCSSCCCEE-E--CCCC
T ss_pred cc-ccc---cCCCCc-------------------------------------------ceEEECCCCeeeec-c--cccc
Confidence 42 111 122234 44444444432211 1 1223
Q ss_pred ccCceEEeeccCCcccccccccccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEec
Q 036079 1171 QALKCLRVRFCSKLESFAESLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEIL 1250 (1399)
Q Consensus 1171 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 1250 (1399)
++|+.|++++|.. ...+....+++|++|++++|...+..|..+..+++|++|++++|. +..+|.....+++|+.|+++
T Consensus 226 ~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 226 VELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp SSCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECC
T ss_pred ccccEEECCCCCC-cccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECC
Confidence 4677777776643 334445567888888888876666667778888888888888864 66677766777888888888
Q ss_pred CCcCcccCccccCCCCCccEEEecCCC
Q 036079 1251 DCENLKALPNCMHNLTSLLCLEIGLCP 1277 (1399)
Q Consensus 1251 ~c~~l~~lp~~~~~l~~L~~L~l~~c~ 1277 (1399)
+| .+..+|..+..+++|++|++++|+
T Consensus 304 ~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 304 HN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp SS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CC-cceecCccccccCcCCEEECCCCc
Confidence 87 455677777778888888888765
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.8e-20 Score=232.64 Aligned_cols=280 Identities=15% Similarity=0.135 Sum_probs=170.5
Q ss_pred CCcCcEEEeecCCCCCCCcc----ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCC-ccCCCcccEE
Q 036079 937 VRSLNRLQISRCPQLLSLPE----LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPE-AALPSRLRTI 1011 (1399)
Q Consensus 937 l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L 1011 (1399)
+++++.+++++|. +..+|. .+++|++|++++|.+.+..|..+..+++|+.|++++|......+. +..+++|++|
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 3456666666654 334443 235666777766666555555666677777777776543332222 3556667777
Q ss_pred EccCCCccccCccccccCccCCcceEEecCCCCccccC-CCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecC
Q 036079 1012 DIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFP-EVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYN 1090 (1399)
Q Consensus 1012 ~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~ 1090 (1399)
++++|. ++.+|..++. .+++|++|++++|......| .+..+++|++|++++ +.++.++. ..+++|+.|++++
T Consensus 129 ~L~~n~-l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~----~~l~~L~~L~l~~ 201 (597)
T 3oja_B 129 VLERND-LSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVDL----SLIPSLFHANVSY 201 (597)
T ss_dssp ECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCCG----GGCTTCSEEECCS
T ss_pred EeeCCC-CCCCCHHHhc-cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcCh----hhhhhhhhhhccc
Confidence 777665 4455554332 26667777776655332222 244556666666666 34555543 2356666666665
Q ss_pred CCCccccccccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCcc
Q 036079 1091 CNSLTHIARIQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLP 1170 (1399)
Q Consensus 1091 c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 1170 (1399)
|. ++. +...++|+.|++++ +..-.. + ...+
T Consensus 202 n~-l~~---l~~~~~L~~L~ls~-------------------------------------------n~l~~~-~--~~~~ 231 (597)
T 3oja_B 202 NL-LST---LAIPIAVEELDASH-------------------------------------------NSINVV-R--GPVN 231 (597)
T ss_dssp SC-CSE---EECCTTCSEEECCS-------------------------------------------SCCCEE-E--CSCC
T ss_pred Cc-ccc---ccCCchhheeeccC-------------------------------------------Cccccc-c--cccC
Confidence 42 221 22334455555544 322111 1 1223
Q ss_pred ccCceEEeeccCCcccccccccccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEec
Q 036079 1171 QALKCLRVRFCSKLESFAESLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEIL 1250 (1399)
Q Consensus 1171 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 1250 (1399)
.+|+.|++++|.. ...+....+++|++|++++|...+..|..+..+++|+.|+|++|. +..+|.....+++|+.|+++
T Consensus 232 ~~L~~L~L~~n~l-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 232 VELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp SCCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECC
T ss_pred CCCCEEECCCCCC-CCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECC
Confidence 4567777766643 333445567888888888887666677788888888888888865 66677777778888888888
Q ss_pred CCcCcccCccccCCCCCccEEEecCCC
Q 036079 1251 DCENLKALPNCMHNLTSLLCLEIGLCP 1277 (1399)
Q Consensus 1251 ~c~~l~~lp~~~~~l~~L~~L~l~~c~ 1277 (1399)
+|. +..+|..+..+++|+.|++++|.
T Consensus 310 ~N~-l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 310 HNH-LLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp SSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCC-CCccCcccccCCCCCEEECCCCC
Confidence 875 44678778888888888888875
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=2.3e-20 Score=213.85 Aligned_cols=229 Identities=19% Similarity=0.312 Sum_probs=156.5
Q ss_pred CCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEc
Q 036079 545 NLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRN 624 (1399)
Q Consensus 545 ~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 624 (1399)
...+++.|+|++|.+..+|..++++++|++|+|++|.++.+|..++++++|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 45789999999999999999999999999999999999999999999999999999996 45689999999999999999
Q ss_pred CCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEeee
Q 036079 625 SNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLEW 704 (1399)
Q Consensus 625 ~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 704 (1399)
++|.....+|..++...
T Consensus 158 ~~n~~~~~~p~~~~~~~--------------------------------------------------------------- 174 (328)
T 4fcg_A 158 RACPELTELPEPLASTD--------------------------------------------------------------- 174 (328)
T ss_dssp EEETTCCCCCSCSEEEC---------------------------------------------------------------
T ss_pred CCCCCccccChhHhhcc---------------------------------------------------------------
Confidence 99887888887654410
Q ss_pred cCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCCCCccceeeeccc
Q 036079 705 STDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQLPLLKHLEISRM 784 (1399)
Q Consensus 705 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~Ls~~ 784 (1399)
....+..+++|+.|++++|.+..+|.++. .+++|+.|++++|.+....+.++.+++|++|++++|
T Consensus 175 -------------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 175 -------------ASGEHQGLVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp --------------CCCEEESTTCCEEEEEEECCCCCCGGGG--GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC
T ss_pred -------------chhhhccCCCCCEEECcCCCcCcchHhhc--CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC
Confidence 00011223445555555555555555542 355566666666555443335555666666666665
Q ss_pred ccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCCC---CCCcceEE
Q 036079 785 DRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPEC---LPLLEVLD 861 (1399)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~~---l~~L~~L~ 861 (1399)
...+.++..+.. +++|++|++.+|+....+.. .+..+++|++|++++|+.+ +.+|.. +++|+.++
T Consensus 240 ~~~~~~p~~~~~------l~~L~~L~L~~n~~~~~~p~-----~~~~l~~L~~L~L~~n~~~-~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 240 TALRNYPPIFGG------RAPLKRLILKDCSNLLTLPL-----DIHRLTQLEKLDLRGCVNL-SRLPSLIAQLPANCIIL 307 (328)
T ss_dssp TTCCBCCCCTTC------CCCCCEEECTTCTTCCBCCT-----TGGGCTTCCEEECTTCTTC-CCCCGGGGGSCTTCEEE
T ss_pred cchhhhHHHhcC------CCCCCEEECCCCCchhhcch-----hhhcCCCCCEEeCCCCCch-hhccHHHhhccCceEEe
Confidence 555555444333 55666666665544333211 2456777888888876444 467753 45566666
Q ss_pred ecc
Q 036079 862 IQC 864 (1399)
Q Consensus 862 l~~ 864 (1399)
+..
T Consensus 308 l~~ 310 (328)
T 4fcg_A 308 VPP 310 (328)
T ss_dssp CCG
T ss_pred CCH
Confidence 654
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=7e-20 Score=211.28 Aligned_cols=282 Identities=19% Similarity=0.174 Sum_probs=176.9
Q ss_pred cccEEEecCCcccccCccccCccccceeeccCccccccch-hhhccccccEEEcCCccccccchhhhcccCcccEEEcCC
Q 036079 548 RLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPE-SINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSN 626 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 626 (1399)
++++++++++.++.+|..+. +.|++|+|++|.|+.+|. .|+++++|++|++++|......|..|+.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 56667777666666665553 466677777777666644 566677777777776543333366666777777777776
Q ss_pred CcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEeeecC
Q 036079 627 VDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLEWST 706 (1399)
Q Consensus 627 n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 706 (1399)
|. +..+|..+. ++|++|++.++.+.. .....+.++++|+.|+++.+.
T Consensus 110 n~-l~~l~~~~~--~~L~~L~l~~n~l~~------------------------------~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 110 NQ-LKELPEKMP--KTLQELRVHENEITK------------------------------VRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp SC-CSBCCSSCC--TTCCEEECCSSCCCB------------------------------BCHHHHTTCTTCCEEECCSSC
T ss_pred Cc-CCccChhhc--ccccEEECCCCcccc------------------------------cCHhHhcCCccccEEECCCCc
Confidence 66 556665543 456666554443221 111223334444455444332
Q ss_pred CCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceeeecccc
Q 036079 707 DISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLEISRMD 785 (1399)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~Ls~~~ 785 (1399)
.... ......+..+++|+.|++++|.+..+|..+. ++|+.|++++|.+....+ .+..+++|+.|++++|.
T Consensus 157 l~~~-----~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 157 LKSS-----GIENGAFQGMKKLSYIRIADTNITTIPQGLP----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp CCGG-----GBCTTGGGGCTTCCEEECCSSCCCSCCSSCC----TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred CCcc-----CcChhhccCCCCcCEEECCCCccccCCcccc----ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 1100 0112345567889999999999988887653 689999999998766655 68889999999999987
Q ss_pred cceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCC-CC---------CC
Q 036079 786 RVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLP-EC---------LP 855 (1399)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p-~~---------l~ 855 (1399)
.....+..+.. +++|++|+++++... .+ + ..+..+++|++|++++ +.+++ +| .. .+
T Consensus 228 l~~~~~~~~~~------l~~L~~L~L~~N~l~-~l-p----~~l~~l~~L~~L~l~~-N~i~~-~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 228 ISAVDNGSLAN------TPHLRELHLNNNKLV-KV-P----GGLADHKYIQVVYLHN-NNISA-IGSNDFCPPGYNTKKA 293 (330)
T ss_dssp CCEECTTTGGG------STTCCEEECCSSCCS-SC-C----TTTTTCSSCCEEECCS-SCCCC-CCTTSSSCSSCCTTSC
T ss_pred CceeChhhccC------CCCCCEEECCCCcCc-cC-C----hhhccCCCcCEEECCC-CcCCc-cChhhcCCcccccccc
Confidence 65544434433 789999999886432 22 1 2356789999999998 46663 33 22 25
Q ss_pred CcceEEecccCc-----ccccCCCCCccceEEEeCCC
Q 036079 856 LLEVLDIQCCGQ-----LLVTIKYLPALSGLQINGCK 887 (1399)
Q Consensus 856 ~L~~L~l~~~~~-----~~~~~~~l~~L~~L~l~~n~ 887 (1399)
.++.|++.+|+. .+..+..+++++.+++++|+
T Consensus 294 ~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccceEeecCcccccccCccccccccceeEEEecccC
Confidence 677788877753 24566777788888877764
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=3.5e-20 Score=211.12 Aligned_cols=102 Identities=21% Similarity=0.328 Sum_probs=82.4
Q ss_pred CcccEEEecCCccc---ccCccccCccccceeeccC-cccc-ccchhhhccccccEEEcCCccccccchhhhcccCcccE
Q 036079 547 PRLRVFSLHGYCVS---KLPNEIGNLKHLRFLNLSG-TEIQ-ILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHH 621 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~---~lp~~~~~l~~L~~L~Ls~-n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 621 (1399)
.+++.|+|++|.+. .+|..|+++++|++|+|++ |.+. .+|..|+++++|++|++++|.....+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57899999999988 4788999999999999995 8887 78889999999999999997666688888999999999
Q ss_pred EEcCCCcccccCCcccccccccCccce
Q 036079 622 LRNSNVDSLEEMPKGFGKLTCLLTLCT 648 (1399)
Q Consensus 622 L~l~~n~~~~~lp~~~~~L~~L~~L~l 648 (1399)
|++++|.+...+|..++.+++|++|++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 999998844466665555555544443
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.6e-19 Score=208.40 Aligned_cols=282 Identities=17% Similarity=0.126 Sum_probs=172.1
Q ss_pred cccEEEecCCcccccCccccCccccceeeccCccccccc-hhhhccccccEEEcCCccccccchhhhcccCcccEEEcCC
Q 036079 548 RLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILP-ESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSN 626 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 626 (1399)
++++++++++.++.+|..+. ++|++|+|++|.|+.+| ..|.++++|++|++++|......|..|+++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 56666666666666665553 46666666666666553 3566666666666666543333355666666666666666
Q ss_pred CcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEeeecC
Q 036079 627 VDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLEWST 706 (1399)
Q Consensus 627 n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 706 (1399)
|. +..+|..+. ++|++|++.+|.+.... ...+.++++|+.|+++.+.
T Consensus 112 n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~------------------------------~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 112 NH-LVEIPPNLP--SSLVELRIHDNRIRKVP------------------------------KGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp SC-CCSCCSSCC--TTCCEEECCSSCCCCCC------------------------------SGGGSSCSSCCEEECCSCC
T ss_pred Cc-CCccCcccc--ccCCEEECCCCccCccC------------------------------HhHhCCCccCCEEECCCCc
Confidence 66 556665544 56666665444332110 0112333344444443322
Q ss_pred CCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceeeecccc
Q 036079 707 DISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLEISRMD 785 (1399)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~Ls~~~ 785 (1399)
.... ......+..+ +|+.|++++|.+..+|..+. ++|+.|++++|.+....+ .+..+++|+.|++++|.
T Consensus 159 l~~~-----~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 159 LENS-----GFEPGAFDGL-KLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp CBGG-----GSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC----SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred cccC-----CCCcccccCC-ccCEEECcCCCCCccCcccc----CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 1100 0112234444 78888999999888887653 689999999988776664 68889999999999886
Q ss_pred cceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCCC---------CCC
Q 036079 786 RVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPEC---------LPL 856 (1399)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~~---------l~~ 856 (1399)
.....+..+.. +++|++|++.++.. ..+ + ..+..+++|++|++++ +.+++.-+.. .+.
T Consensus 229 l~~~~~~~~~~------l~~L~~L~L~~N~l-~~l-p----~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 229 IRMIENGSLSF------LPTLRELHLDNNKL-SRV-P----AGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp CCCCCTTGGGG------CTTCCEEECCSSCC-CBC-C----TTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCC
T ss_pred CCcCChhHhhC------CCCCCEEECCCCcC-eec-C----hhhhcCccCCEEECCC-CCCCccChhHcccccccccccc
Confidence 55544334433 78999999988643 222 1 1356788999999998 4666322221 356
Q ss_pred cceEEecccCc-----ccccCCCCCccceEEEeCCC
Q 036079 857 LEVLDIQCCGQ-----LLVTIKYLPALSGLQINGCK 887 (1399)
Q Consensus 857 L~~L~l~~~~~-----~~~~~~~l~~L~~L~l~~n~ 887 (1399)
|+.|++.+|+. .+..+..+++|+.+++++|+
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 77888877743 24566778888888887765
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.3e-20 Score=214.66 Aligned_cols=242 Identities=14% Similarity=0.153 Sum_probs=167.5
Q ss_pred CCCcchhh--HHhhhcCCCCcccEEEecC-Cccc-ccCccccCccccceeeccCcccc-ccchhhhccccccEEEcCCcc
Q 036079 530 YEGNYLAW--SVLQMLLNLPRLRVFSLHG-YCVS-KLPNEIGNLKHLRFLNLSGTEIQ-ILPESINSLYNLHTILLENCH 604 (1399)
Q Consensus 530 ~~~~~~~~--~~~~~~~~l~~Lr~L~L~~-n~i~-~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~ 604 (1399)
+.++.+.+ .+|..|.++++|++|++++ |.+. .+|..|+++++|++|+|++|.++ .+|..|.++++|++|++++|.
T Consensus 57 L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136 (313)
T ss_dssp EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc
Confidence 34566666 7788899999999999995 8887 67999999999999999999999 889999999999999999987
Q ss_pred ccccchhhhcccCcccEEEcCCCcccccCCccccccc-ccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCc
Q 036079 605 RLKKLCKDMGNLIKLHHLRNSNVDSLEEMPKGFGKLT-CLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDV 683 (1399)
Q Consensus 605 ~l~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~-~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~ 683 (1399)
....+|..+..+++|++|++++|.+...+|..++.+. +|++|++.+|...+.
T Consensus 137 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~--------------------------- 189 (313)
T 1ogq_A 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK--------------------------- 189 (313)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE---------------------------
T ss_pred cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc---------------------------
Confidence 6668999999999999999999996568999999998 899998865543210
Q ss_pred chhhhhhccCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCC-CCcccCcCCCcceeEEEeeCCC
Q 036079 684 GDAREAQLNGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTK-FPNWLGESSFLKLLFLRFEGCG 762 (1399)
Q Consensus 684 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~l~~~~ 762 (1399)
.+..+..++ |+.|++++|.+.. .|..+ ..+++|+.|++++|.
T Consensus 190 ----------------------------------~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 190 ----------------------------------IPPTFANLN-LAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNS 232 (313)
T ss_dssp ----------------------------------CCGGGGGCC-CSEEECCSSEEEECCGGGC--CTTSCCSEEECCSSE
T ss_pred ----------------------------------CChHHhCCc-ccEEECcCCcccCcCCHHH--hcCCCCCEEECCCCc
Confidence 001111122 5555555555542 23333 245666666666666
Q ss_pred CCCCCCCCCCCCccceeeecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecC
Q 036079 763 KCTSLPSVGQLPLLKHLEISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVC 842 (1399)
Q Consensus 763 ~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~ 842 (1399)
+...++.+..+++|++|++++|...+.++..+.. +++|++|+++++...... + ....+++|+.|++++
T Consensus 233 l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~~i-p-----~~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ------LKFLHSLNVSFNNLCGEI-P-----QGGNLQRFDVSAYAN 300 (313)
T ss_dssp ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGG------CTTCCEEECCSSEEEEEC-C-----CSTTGGGSCGGGTCS
T ss_pred eeeecCcccccCCCCEEECcCCcccCcCChHHhc------CcCCCEEECcCCcccccC-C-----CCccccccChHHhcC
Confidence 6555555666666777777666555444444333 555555555554322111 1 123466666666666
Q ss_pred CcCcc
Q 036079 843 CSKLQ 847 (1399)
Q Consensus 843 c~~l~ 847 (1399)
++.+.
T Consensus 301 N~~lc 305 (313)
T 1ogq_A 301 NKCLC 305 (313)
T ss_dssp SSEEE
T ss_pred CCCcc
Confidence 55454
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=3.7e-20 Score=233.31 Aligned_cols=86 Identities=20% Similarity=0.328 Sum_probs=51.8
Q ss_pred cCCCCcccEEEecCCcc----cccCcccc------------CccccceeeccCcccc-ccchhhhcc--ccccEEEcCCc
Q 036079 543 LLNLPRLRVFSLHGYCV----SKLPNEIG------------NLKHLRFLNLSGTEIQ-ILPESINSL--YNLHTILLENC 603 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i----~~lp~~~~------------~l~~L~~L~Ls~n~i~-~lp~~i~~L--~~L~~L~L~~~ 603 (1399)
+..+++|+.|+|+++.. ..+|..++ .+++|++|+|++|.++ ..+..+..+ .+|++|++++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 45566677777776532 12233332 5677888888877766 334455553 34888888776
Q ss_pred cccc--cchhhhcccCcccEEEcCCCc
Q 036079 604 HRLK--KLCKDMGNLIKLHHLRNSNVD 628 (1399)
Q Consensus 604 ~~l~--~lp~~i~~L~~L~~L~l~~n~ 628 (1399)
.... .++..+..+++|++|++++|.
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~ 175 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESS 175 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCE
T ss_pred CCcCHHHHHHHHhhCCCCCEEECcccc
Confidence 5322 233334577778888887776
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=1.8e-18 Score=212.87 Aligned_cols=88 Identities=19% Similarity=0.184 Sum_probs=70.4
Q ss_pred cccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcCCC
Q 036079 548 RLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNV 627 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n 627 (1399)
++++|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++| .+..+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC
Confidence 58899999999999998776 799999999999999987 5789999999986 4677876 7789999999988
Q ss_pred cccccCCcccccccccCccce
Q 036079 628 DSLEEMPKGFGKLTCLLTLCT 648 (1399)
Q Consensus 628 ~~~~~lp~~~~~L~~L~~L~l 648 (1399)
. +..+|. .+++|+.|++
T Consensus 112 ~-l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 112 P-LTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp C-CCCCCC---CCTTCCEEEC
T ss_pred c-CCCCCC---CCCCcCEEEC
Confidence 7 666664 3344444444
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=2.6e-18 Score=196.67 Aligned_cols=228 Identities=22% Similarity=0.296 Sum_probs=133.5
Q ss_pred ccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCC-ccCCCcccEEEccCCCccccCccccccCccCCcceE
Q 036079 959 CRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPE-AALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSL 1037 (1399)
Q Consensus 959 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L 1037 (1399)
++++.|++++|.+. .+|..+..+++|++|++++|... .+|. +..+++|++|++++|. +..+|..+.. +++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~--l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASIAS--LNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGG--CTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHHHhc--CcCCCEE
Confidence 34556666665543 55666666777777777775433 5553 5556777777777776 4466665544 6777777
Q ss_pred EecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCcccccc-ccccCccceeeeccccC
Q 036079 1038 KIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHIAR-IQLAPSLKRLIINSCHN 1116 (1399)
Q Consensus 1038 ~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~-~~~~~~L~~L~l~~c~~ 1116 (1399)
++++|+.+..+|... ....+.+ .+ ..+++|++|++++|. ++.+|. +..+++|++|++++|.
T Consensus 156 ~L~~n~~~~~~p~~~-----~~~~~~~---------~~--~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~- 217 (328)
T 4fcg_A 156 SIRACPELTELPEPL-----ASTDASG---------EH--QGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSP- 217 (328)
T ss_dssp EEEEETTCCCCCSCS-----EEEC-CC---------CE--EESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSC-
T ss_pred ECCCCCCccccChhH-----hhccchh---------hh--ccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCC-
Confidence 777776666555421 1111100 00 224445555555432 222221 2333333333333321
Q ss_pred cccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCccccCceEEeeccCCccccccccccccc
Q 036079 1117 LRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQALKCLRVRFCSKLESFAESLDNTSL 1196 (1399)
Q Consensus 1117 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L 1196 (1399)
.....+....+++|
T Consensus 218 ------------------------------------------------------------------l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 218 ------------------------------------------------------------------LSALGPAIHHLPKL 231 (328)
T ss_dssp ------------------------------------------------------------------CCCCCGGGGGCTTC
T ss_pred ------------------------------------------------------------------CCcCchhhccCCCC
Confidence 00000001123455
Q ss_pred ccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcCcccCccccCCCCCccEEEecC
Q 036079 1197 EEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCENLKALPNCMHNLTSLLCLEIGL 1275 (1399)
Q Consensus 1197 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 1275 (1399)
++|++++|...+.+|..+..+++|++|++++|+.++.+|..+..+++|+.|++++|+.++.+|..++++++|+.+++..
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 5566666666666777777888888888888888888887777788888888888888888888888888888887764
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=1.8e-17 Score=191.07 Aligned_cols=284 Identities=14% Similarity=0.132 Sum_probs=146.8
Q ss_pred cccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC--CccCCCcccEEEccCCCccccCccccccCccCCcceE
Q 036079 960 RLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP--EAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSL 1037 (1399)
Q Consensus 960 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L 1037 (1399)
+++.++++++.+ ..+|..+ .++|+.|++++|. +..++ .+..+++|++|++++|......|..+.. +++|++|
T Consensus 32 ~l~~l~~~~~~l-~~lp~~~--~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGL-EKVPKDL--PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP--LVKLERL 105 (330)
T ss_dssp ETTEEECTTSCC-CSCCCSC--CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT--CTTCCEE
T ss_pred CCeEEEecCCCc-cccCccC--CCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC--CCCCCEE
Confidence 444555544442 2233322 1445555555532 22222 2344555555555555522222333322 5666666
Q ss_pred EecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCcc--c-cccccccCccceeeeccc
Q 036079 1038 KIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLT--H-IARIQLAPSLKRLIINSC 1114 (1399)
Q Consensus 1038 ~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~--~-~~~~~~~~~L~~L~l~~c 1114 (1399)
++++|. ++.+|... +++|++|++++ +.++.++...+ ..+++|+.|++++|.... . ...+..+++|++|++++|
T Consensus 106 ~Ls~n~-l~~l~~~~-~~~L~~L~l~~-n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 106 YLSKNQ-LKELPEKM-PKTLQELRVHE-NEITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp ECCSSC-CSBCCSSC-CTTCCEEECCS-SCCCBBCHHHH-TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred ECCCCc-CCccChhh-cccccEEECCC-CcccccCHhHh-cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 666644 44444322 25677777776 35555555433 456777777777764321 1 122455666677766654
Q ss_pred cCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCccccCceEEeeccCCccccc-ccccc
Q 036079 1115 HNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQALKCLRVRFCSKLESFA-ESLDN 1193 (1399)
Q Consensus 1115 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~ 1193 (1399)
. +..+ +. ..+++|+ .|++++|......+ ....+
T Consensus 182 ~-l~~l-------------------~~--~~~~~L~------------------------~L~l~~n~l~~~~~~~~~~l 215 (330)
T 1xku_A 182 N-ITTI-------------------PQ--GLPPSLT------------------------ELHLDGNKITKVDAASLKGL 215 (330)
T ss_dssp C-CCSC-------------------CS--SCCTTCS------------------------EEECTTSCCCEECTGGGTTC
T ss_pred c-cccC-------------------Cc--cccccCC------------------------EEECCCCcCCccCHHHhcCC
Confidence 2 1111 11 1113344 44444443211111 12345
Q ss_pred cccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcCcccCcc-ccC------CCC
Q 036079 1194 TSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCENLKALPN-CMH------NLT 1266 (1399)
Q Consensus 1194 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~-~~~------~l~ 1266 (1399)
++|++|++++|...+..+..+..+++|++|++++|. +..+|..+..+++|++|++++|.. +.+|. .+. ...
T Consensus 216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i-~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNI-SAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCC-CCCCTTSSSCSSCCTTSC
T ss_pred CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcC-CccChhhcCCcccccccc
Confidence 667777777665444444567777777777777764 557777777777777777777643 33332 232 246
Q ss_pred CccEEEecCCCCCcccccccccccccCccccccccc
Q 036079 1267 SLLCLEIGLCPRLICKPLFEWGLNRFTSLKRLEICE 1302 (1399)
Q Consensus 1267 ~L~~L~l~~c~~l~~~~~~~~~l~~l~~L~~L~l~~ 1302 (1399)
+|+.|++++++... .......+..+.+++.+++++
T Consensus 294 ~l~~l~l~~N~~~~-~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 294 SYSGVSLFSNPVQY-WEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CCSEEECCSSSSCG-GGSCGGGGTTCCCGGGEEC--
T ss_pred cccceEeecCcccc-cccCccccccccceeEEEecc
Confidence 77778887766432 111223566677777777754
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=1.1e-20 Score=238.24 Aligned_cols=91 Identities=12% Similarity=-0.029 Sum_probs=47.2
Q ss_pred cCCCCCccEEEecCCCC-CcccccccccccccCcccccccccCCCC---cccCCCCCCCccEEecCCCCCccc--cccCC
Q 036079 1262 MHNLTSLLCLEIGLCPR-LICKPLFEWGLNRFTSLKRLEICEGCPD---LVSSPRFPASLTVLRISSMPNLIC--LSSIG 1335 (1399)
Q Consensus 1262 ~~~l~~L~~L~l~~c~~-l~~~~~~~~~l~~l~~L~~L~l~~~~~~---l~~~~~~~~~L~~L~l~~c~~l~~--l~~~~ 1335 (1399)
+..+++|+.|++++|.. +.... .......+++|+.|+++++... +..+...+++|+.|++++|+ ++. ++...
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~ 509 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLG-LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAV 509 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHH-HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHH-HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHH
Confidence 44455566666555443 11100 0001122455555555432211 11122345778888888887 433 34333
Q ss_pred CCCCCCCeeeccCCCCCCcC
Q 036079 1336 ENLTSLETLDLHFCPKLKYF 1355 (1399)
Q Consensus 1336 ~~l~~L~~L~l~~c~~l~~~ 1355 (1399)
..+++|++|++++|+ ++..
T Consensus 510 ~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp HHCSSCCEEEEESCB-CCTT
T ss_pred HhcCccCeeECcCCc-CCHH
Confidence 678889999999987 5543
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=2.7e-17 Score=189.65 Aligned_cols=108 Identities=12% Similarity=0.028 Sum_probs=63.7
Q ss_pred cccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcCcccCcc-ccCC------
Q 036079 1192 DNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCENLKALPN-CMHN------ 1264 (1399)
Q Consensus 1192 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~------ 1264 (1399)
.+++|++|++++|...+..+..+..+++|++|++++|. +..+|..+..+++|+.|++++|.. +.+|. .+..
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVK 292 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCC-CBCCTTSSSCSSCCSS
T ss_pred CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCC-CccChhHccccccccc
Confidence 45666677777665444444456677777777777754 556776666677777777777543 33332 3322
Q ss_pred CCCccEEEecCCCCCcccccccccccccCccccccccc
Q 036079 1265 LTSLLCLEIGLCPRLICKPLFEWGLNRFTSLKRLEICE 1302 (1399)
Q Consensus 1265 l~~L~~L~l~~c~~l~~~~~~~~~l~~l~~L~~L~l~~ 1302 (1399)
..+|+.|++++++... .......+..+++|+.+++++
T Consensus 293 ~~~l~~L~l~~N~~~~-~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPY-WEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp SCCBSEEECCSSSSCG-GGSCGGGGTTBCCSTTEEC--
T ss_pred cccccceEeecCcccc-cccCcccccccchhhhhhccc
Confidence 3567777777766431 111123566677777777754
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=3.4e-17 Score=201.47 Aligned_cols=258 Identities=26% Similarity=0.321 Sum_probs=170.1
Q ss_pred cCcEEEeecCCCCCCCcc-ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEEEccCCC
Q 036079 939 SLNRLQISRCPQLLSLPE-LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCN 1017 (1399)
Q Consensus 939 ~L~~L~l~~~~~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~ 1017 (1399)
+++.|++++|. +..+|. .+++|++|++++|.+. .+|. .+++|++|++++|. +..+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~-L~~lp~~l~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESG-LTTLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSC-CSCCCSCCCTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEECSCC
T ss_pred CCcEEEecCCC-cCccChhhCCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECcCCc
Confidence 57788888777 446665 4567888888888754 4554 46778888888754 555665 56778888887776
Q ss_pred ccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCcccc
Q 036079 1018 ALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHI 1097 (1399)
Q Consensus 1018 ~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~ 1097 (1399)
++.+|.. +++|+.|++++|. ++.+|. .+++|++|++++| .++.+|. .+++|+.|++++| .++.+
T Consensus 113 -l~~l~~~-----l~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N-~l~~l~~-----~~~~L~~L~L~~N-~l~~l 176 (622)
T 3g06_A 113 -LTHLPAL-----PSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDN-QLASLPA-----LPSELCKLWAYNN-QLTSL 176 (622)
T ss_dssp -CCCCCCC-----CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCC
T ss_pred -CCCCCCC-----CCCcCEEECCCCC-CCcCCC--CCCCCCEEECcCC-cCCCcCC-----ccCCCCEEECCCC-CCCCC
Confidence 5556552 6677778777764 555554 2467777777774 5666553 2466777777764 34444
Q ss_pred ccccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCccccCceEE
Q 036079 1098 ARIQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQALKCLR 1177 (1399)
Q Consensus 1098 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 1177 (1399)
+ ..+++|+.|++++|. +.. ++ ..+++|+.|+
T Consensus 177 ~--~~~~~L~~L~Ls~N~-l~~-------------------------------------------l~---~~~~~L~~L~ 207 (622)
T 3g06_A 177 P--MLPSGLQELSVSDNQ-LAS-------------------------------------------LP---TLPSELYKLW 207 (622)
T ss_dssp C--CCCTTCCEEECCSSC-CSC-------------------------------------------CC---CCCTTCCEEE
T ss_pred c--ccCCCCcEEECCCCC-CCC-------------------------------------------CC---CccchhhEEE
Confidence 4 445666666666542 111 11 1123455555
Q ss_pred eeccCCcccccccccccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcCccc
Q 036079 1178 VRFCSKLESFAESLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCENLKA 1257 (1399)
Q Consensus 1178 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 1257 (1399)
+++|. +..++. .+++|+.|++++| .++.+| ..+++|++|++++|. +..+|. .+++|+.|++++|. ++.
T Consensus 208 L~~N~-l~~l~~--~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~-L~~ 275 (622)
T 3g06_A 208 AYNNR-LTSLPA--LPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTR 275 (622)
T ss_dssp CCSSC-CSSCCC--CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CCS
T ss_pred CcCCc-ccccCC--CCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC-CCc
Confidence 55542 233332 2367888888876 455566 456889999999974 778886 45889999999874 558
Q ss_pred CccccCCCCCccEEEecCCCCCcc
Q 036079 1258 LPNCMHNLTSLLCLEIGLCPRLIC 1281 (1399)
Q Consensus 1258 lp~~~~~l~~L~~L~l~~c~~l~~ 1281 (1399)
+|..+.++++|+.|+|++|+-...
T Consensus 276 lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 276 LPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCHHHhhccccCEEEecCCCCCCc
Confidence 898999999999999999875543
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=198.29 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=49.9
Q ss_pred cccEEEecCCcccccCc-cccCccccceeeccCcccccc-chhhhccccccEEEcCCccccccchhh-hcccCcccEEEc
Q 036079 548 RLRVFSLHGYCVSKLPN-EIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKKLCKD-MGNLIKLHHLRN 624 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~-~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l 624 (1399)
+|++|++++|.++.+|. .|.++++|++|+|++|.|+.+ |..|.++++|++|++++| .+..+|.. ++++++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEEC
Confidence 55555555555555533 455555555555555555544 334555555555555553 23334333 555555555555
Q ss_pred CCCcccccCCc--ccccccccCccce
Q 036079 625 SNVDSLEEMPK--GFGKLTCLLTLCT 648 (1399)
Q Consensus 625 ~~n~~~~~lp~--~~~~L~~L~~L~l 648 (1399)
++|. +..+|. .++.+++|++|++
T Consensus 132 ~~n~-l~~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 132 LGNP-YKTLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp TTCC-CSSSCSSCSCTTCTTCCEEEE
T ss_pred CCCC-CcccCchhhhccCCCCcEEEC
Confidence 5554 334443 3444444444444
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=2.6e-20 Score=226.69 Aligned_cols=105 Identities=11% Similarity=0.036 Sum_probs=66.5
Q ss_pred CcccEEEecCCcccccC--ccccCccccceeeccCcccc-----ccchhhhccccccEEEcCCccccccchhhh-cccC-
Q 036079 547 PRLRVFSLHGYCVSKLP--NEIGNLKHLRFLNLSGTEIQ-----ILPESINSLYNLHTILLENCHRLKKLCKDM-GNLI- 617 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~lp--~~~~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~- 617 (1399)
++|++|||++|.++..+ ..+..+++|++|+|++|.++ .+|..+..+++|++|++++|......+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46777888877776542 33677778888888887777 456667777888888888765333333333 3354
Q ss_pred ---cccEEEcCCCcccc----cCCcccccccccCccceEEe
Q 036079 618 ---KLHHLRNSNVDSLE----EMPKGFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 618 ---~L~~L~l~~n~~~~----~lp~~~~~L~~L~~L~l~~~ 651 (1399)
+|++|++++|.+.. .+|..+..+++|++|++.+|
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC
Confidence 58888887776321 34555666666666655433
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=2e-16 Score=190.72 Aligned_cols=146 Identities=17% Similarity=0.198 Sum_probs=97.1
Q ss_pred cEEEeecCCCCCCCcc-ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC-CccCCCcccEEEccCCCc
Q 036079 941 NRLQISRCPQLLSLPE-LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP-EAALPSRLRTIDIEGCNA 1018 (1399)
Q Consensus 941 ~~L~l~~~~~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~Ls~~~~ 1018 (1399)
..++.++.. +..+|. .++++++|++++|.+.+..+..|..+++|+.|++++|......+ .+..+++|++|++++|.
T Consensus 57 ~~v~c~~~~-l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~- 134 (452)
T 3zyi_A 57 SKVVCTRRG-LSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW- 134 (452)
T ss_dssp CEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred cEEEECCCC-cCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-
Confidence 445555443 556666 55789999999998877778888899999999999864433322 35667888888888887
Q ss_pred cccCccccccCccCCcceEEecCCCCccccCC--CCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCC
Q 036079 1019 LKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE--VSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNC 1091 (1399)
Q Consensus 1019 l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c 1091 (1399)
++.+|...+. .+++|++|++++|. +..++. +..+++|++|++++|+.++.++...+ ..+++|++|++++|
T Consensus 135 l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 135 LTVIPSGAFE-YLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-EGLFNLKYLNLGMC 206 (452)
T ss_dssp CSBCCTTTSS-SCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT-TTCTTCCEEECTTS
T ss_pred CCccChhhhc-ccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhc-cCCCCCCEEECCCC
Confidence 5555554333 27778888887765 444443 34456677777776666666655433 34566666666654
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=2.1e-16 Score=189.92 Aligned_cols=145 Identities=18% Similarity=0.251 Sum_probs=90.5
Q ss_pred cEEEeecCCCCCCCcc-ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC--CccCCCcccEEEccCCC
Q 036079 941 NRLQISRCPQLLSLPE-LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP--EAALPSRLRTIDIEGCN 1017 (1399)
Q Consensus 941 ~~L~l~~~~~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~Ls~~~ 1017 (1399)
..++.++.. +..+|. .+++++.|+|++|.+.+..+..|..+++|+.|+|++|. +..++ .+..+++|++|++++|.
T Consensus 46 ~~v~c~~~~-l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 46 SKVICVRKN-LREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CEEECCSCC-CSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSC
T ss_pred CEEEeCCCC-cCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCc
Confidence 445555443 566666 45788888888888777677778888888888888864 33333 35567778888888776
Q ss_pred ccccCccccccCccCCcceEEecCCCCccccCC--CCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCC
Q 036079 1018 ALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE--VSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNC 1091 (1399)
Q Consensus 1018 ~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c 1091 (1399)
++.+|...+. .+++|++|++++|. +..++. +..+++|++|++++|+.++.++...+ ..+++|++|++++|
T Consensus 124 -l~~~~~~~~~-~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 124 -LTTIPNGAFV-YLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-EGLSNLRYLNLAMC 195 (440)
T ss_dssp -CSSCCTTTSC-SCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT-TTCSSCCEEECTTS
T ss_pred -CCeeCHhHhh-ccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchh-hcccccCeecCCCC
Confidence 5555553332 26777777777754 444443 34455666666666555555554333 34555555555554
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=7e-20 Score=222.89 Aligned_cols=121 Identities=17% Similarity=0.097 Sum_probs=85.1
Q ss_pred CCcchhhHHhhh-cCCCCcccEEEecCCccc-----ccCccccCccccceeeccCccccc-cchhh-hccc----cccEE
Q 036079 531 EGNYLAWSVLQM-LLNLPRLRVFSLHGYCVS-----KLPNEIGNLKHLRFLNLSGTEIQI-LPESI-NSLY----NLHTI 598 (1399)
Q Consensus 531 ~~~~~~~~~~~~-~~~l~~Lr~L~L~~n~i~-----~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~i-~~L~----~L~~L 598 (1399)
+++.++...... +..+++|++|+|++|.++ .+|..+..+++|++|+|++|.+.. .+..+ ..+. +|++|
T Consensus 11 s~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L 90 (461)
T 1z7x_W 11 QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 90 (461)
T ss_dssp ESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEE
T ss_pred hhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEE
Confidence 345554443343 778889999999999987 457788889999999999999884 23333 3455 69999
Q ss_pred EcCCcccc----ccchhhhcccCcccEEEcCCCcccccCCccc-----ccccccCccceEEe
Q 036079 599 LLENCHRL----KKLCKDMGNLIKLHHLRNSNVDSLEEMPKGF-----GKLTCLLTLCTFVV 651 (1399)
Q Consensus 599 ~L~~~~~l----~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~-----~~L~~L~~L~l~~~ 651 (1399)
++++|... ..+|..+..+++|++|++++|.+....+..+ ...++|++|++.++
T Consensus 91 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 91 SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred EccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 99997644 2568889999999999999998322222222 22345666665433
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=1.5e-16 Score=191.95 Aligned_cols=100 Identities=24% Similarity=0.353 Sum_probs=65.6
Q ss_pred CcccEEEecCCccccc-CccccCccccceeeccCccccccc-hhhhccccccEEEcCCccccccchh-hhcccCcccEEE
Q 036079 547 PRLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQILP-ESINSLYNLHTILLENCHRLKKLCK-DMGNLIKLHHLR 623 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 623 (1399)
++|++|+|++|.++.+ |..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++|. +..+|. .|..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEE
Confidence 4677777777777766 566777777777777777777553 567777777777777753 444443 366777777777
Q ss_pred cCCCcccccCCc-ccccccccCccce
Q 036079 624 NSNVDSLEEMPK-GFGKLTCLLTLCT 648 (1399)
Q Consensus 624 l~~n~~~~~lp~-~~~~L~~L~~L~l 648 (1399)
+++|. +..+|. .|.++++|++|++
T Consensus 154 L~~N~-l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 154 LRNNP-IESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCCCC-cceeCHhHHhcCCcccEEeC
Confidence 77776 444443 4566666666654
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=3e-17 Score=187.01 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=69.2
Q ss_pred CcccEEEecCCcccccCcc-ccCccccceeeccCcccccc---chhhhccccccEEEcCCccccccchhhhcccCcccEE
Q 036079 547 PRLRVFSLHGYCVSKLPNE-IGNLKHLRFLNLSGTEIQIL---PESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHL 622 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~lp~~-~~~l~~L~~L~Ls~n~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 622 (1399)
++|++|+|++|.++.+|.. |.++++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEE
Confidence 4677777777777777643 67777777777777777644 566667777777777774 455667677777777777
Q ss_pred EcCCCcccccCCc--ccccccccCccceE
Q 036079 623 RNSNVDSLEEMPK--GFGKLTCLLTLCTF 649 (1399)
Q Consensus 623 ~l~~n~~~~~lp~--~~~~L~~L~~L~l~ 649 (1399)
++++|. +..+|. .+..+++|++|++.
T Consensus 107 ~l~~n~-l~~~~~~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 107 DFQHSN-LKQMSEFSVFLSLRNLIYLDIS 134 (306)
T ss_dssp ECTTSE-EESSTTTTTTTTCTTCCEEECT
T ss_pred ECCCCc-ccccccchhhhhccCCCEEECC
Confidence 777776 444442 46666666666553
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=4e-18 Score=194.71 Aligned_cols=264 Identities=14% Similarity=0.071 Sum_probs=177.4
Q ss_pred CCCcchhhHHhhhcCCCCcccEEEecCCcccccC-ccccCccccceeeccCccccccchhhhccccccEEEcCCcccccc
Q 036079 530 YEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKK 608 (1399)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~ 608 (1399)
+..+.+.......+..+++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+++ +..+++|++|++++| .+..
T Consensus 17 ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~ 94 (317)
T 3o53_A 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQE 94 (317)
T ss_dssp CCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEE
T ss_pred ccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccc
Confidence 3344554444445777888999999999998774 678899999999999999987765 888999999999985 4555
Q ss_pred chhhhcccCcccEEEcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhh
Q 036079 609 LCKDMGNLIKLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDARE 688 (1399)
Q Consensus 609 lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~ 688 (1399)
+| ..++|++|++++|. +..++. ..+++|++|++.+|.+.... .
T Consensus 95 l~----~~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~------------------------------~ 137 (317)
T 3o53_A 95 LL----VGPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLR------------------------------D 137 (317)
T ss_dssp EE----ECTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGG------------------------------G
T ss_pred cc----CCCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCcc------------------------------c
Confidence 54 44889999999988 555543 23567888877666543211 1
Q ss_pred hhccCccCcCceEeeecCCCCchhHHHHHHhccC-CCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCC
Q 036079 689 AQLNGKLNLKALLLEWSTDISDAAEVETRVLDKL-EPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSL 767 (1399)
Q Consensus 689 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l 767 (1399)
..+.++++|+.|+++.+..... .+..+ ..+++|+.|++++|.+..+|... .+++|+.|++++|.+....
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTV-------NFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEE-------EGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEEC
T ss_pred hhhhccCCCCEEECCCCCCCcc-------cHHHHhhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcch
Confidence 1223334445555543322110 11222 24577888888888887776553 3678888888888776665
Q ss_pred CCCCCCCccceeeecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcc
Q 036079 768 PSVGQLPLLKHLEISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQ 847 (1399)
Q Consensus 768 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 847 (1399)
+.+..+++|+.|++++|... .++..+.. +++|+.|++.+++......+ ..+..+++|+.|++.+++.++
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~------l~~L~~L~l~~N~~~~~~~~----~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLV-LIEKALRF------SQNLEHFDLRGNGFHCGTLR----DFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCC-EECTTCCC------CTTCCEEECTTCCCBHHHHH----HHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhcccCcccEEECcCCccc-chhhHhhc------CCCCCEEEccCCCccCcCHH----HHHhccccceEEECCCchhcc
Confidence 67778888888888887544 45544432 78888888888664422221 124568888888888777777
Q ss_pred cCCCCC
Q 036079 848 GTLPEC 853 (1399)
Q Consensus 848 ~~~p~~ 853 (1399)
+..|..
T Consensus 277 ~~~~~~ 282 (317)
T 3o53_A 277 GQNEEE 282 (317)
T ss_dssp SSSSCC
T ss_pred CCchhc
Confidence 665543
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=8.5e-17 Score=183.26 Aligned_cols=242 Identities=17% Similarity=0.133 Sum_probs=156.0
Q ss_pred cEEEecCCcccccCccccCccccceeeccCccccccchh-hhccccccEEEcCCccccccc---hhhhcccCcccEEEcC
Q 036079 550 RVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPES-INSLYNLHTILLENCHRLKKL---CKDMGNLIKLHHLRNS 625 (1399)
Q Consensus 550 r~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l---p~~i~~L~~L~~L~l~ 625 (1399)
+.++++++.++.+|..+. ++|++|+|++|.++.+|.. +.++++|++|++++|. +..+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECC
Confidence 578999999999998765 6999999999999999876 6899999999999964 4433 6788899999999999
Q ss_pred CCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEeeec
Q 036079 626 NVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLEWS 705 (1399)
Q Consensus 626 ~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 705 (1399)
+|. +..+|..+..+++|++|++.++.......
T Consensus 87 ~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~----------------------------------------------- 118 (306)
T 2z66_A 87 FNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSE----------------------------------------------- 118 (306)
T ss_dssp SCS-EEEEEEEEETCTTCCEEECTTSEEESSTT-----------------------------------------------
T ss_pred CCc-cccChhhcCCCCCCCEEECCCCccccccc-----------------------------------------------
Confidence 998 77888888889999988875543321100
Q ss_pred CCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCC-cccCcCCCcceeEEEeeCCCCCC-CCC-CCCCCCccceeeec
Q 036079 706 TDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFP-NWLGESSFLKLLFLRFEGCGKCT-SLP-SVGQLPLLKHLEIS 782 (1399)
Q Consensus 706 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~~~~L~~L~l~~~~~~~-~l~-~l~~l~~L~~L~Ls 782 (1399)
...+..+++|+.|++++|.+...+ ..+ ..+++|+.|++++|.+.. .+| .+..+++|++|+++
T Consensus 119 -------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 119 -------------FSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp -------------TTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred -------------chhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 012334455666666666655332 222 245667777777666544 233 56667777777777
Q ss_pred ccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCCCCCCcceEEe
Q 036079 783 RMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPECLPLLEVLDI 862 (1399)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~~l~~L~~L~l 862 (1399)
+|......+..+.. +++|++|+++++... .... ..+..+++|++|++++| .+++..|
T Consensus 184 ~n~l~~~~~~~~~~------l~~L~~L~L~~N~l~-~~~~----~~~~~l~~L~~L~L~~N-~l~~~~~----------- 240 (306)
T 2z66_A 184 QCQLEQLSPTAFNS------LSSLQVLNMSHNNFF-SLDT----FPYKCLNSLQVLDYSLN-HIMTSKK----------- 240 (306)
T ss_dssp TSCCCEECTTTTTT------CTTCCEEECTTSCCS-BCCS----GGGTTCTTCCEEECTTS-CCCBCSS-----------
T ss_pred CCCcCCcCHHHhcC------CCCCCEEECCCCccC-ccCh----hhccCcccCCEeECCCC-CCcccCH-----------
Confidence 76544333322222 455555555553321 1100 01334556666666653 4443333
Q ss_pred cccCcccccCCCCC-ccceEEEeCCC
Q 036079 863 QCCGQLLVTIKYLP-ALSGLQINGCK 887 (1399)
Q Consensus 863 ~~~~~~~~~~~~l~-~L~~L~l~~n~ 887 (1399)
..+..++ +|++|++++|.
T Consensus 241 -------~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 241 -------QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp -------SSCCCCCTTCCEEECTTCC
T ss_pred -------HHHHhhhccCCEEEccCCC
Confidence 3445553 77888888877
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=189.42 Aligned_cols=176 Identities=24% Similarity=0.293 Sum_probs=106.2
Q ss_pred CcccEEEecCCccccc-CccccCccccceeeccCccccccc-hhhhccccccEEEcCCccccccchh-hhcccCcccEEE
Q 036079 547 PRLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQILP-ESINSLYNLHTILLENCHRLKKLCK-DMGNLIKLHHLR 623 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 623 (1399)
+++++|+|++|.+..+ +..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++| .+..+|. .|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 4677777777777766 366777777777777777777554 55677777777777774 3444544 467777777777
Q ss_pred cCCCcccccCCc-ccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEe
Q 036079 624 NSNVDSLEEMPK-GFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLL 702 (1399)
Q Consensus 624 l~~n~~~~~lp~-~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 702 (1399)
+++|. +..+|. .|.++++|++|++.++... ..+
T Consensus 143 L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l-----------~~i---------------------------------- 176 (440)
T 3zyj_A 143 LRNNP-IESIPSYAFNRIPSLRRLDLGELKRL-----------SYI---------------------------------- 176 (440)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECCCCTTC-----------CEE----------------------------------
T ss_pred CCCCc-ccccCHHHhhhCcccCEeCCCCCCCc-----------cee----------------------------------
Confidence 77776 444443 4666666666655322110 000
Q ss_pred eecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceeee
Q 036079 703 EWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLEI 781 (1399)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L 781 (1399)
....+..+++|+.|++++|.+..+|.. ..+++|+.|++++|.+....+ .+..+++|+.|++
T Consensus 177 ---------------~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 238 (440)
T 3zyj_A 177 ---------------SEGAFEGLSNLRYLNLAMCNLREIPNL---TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238 (440)
T ss_dssp ---------------CTTTTTTCSSCCEEECTTSCCSSCCCC---TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ---------------CcchhhcccccCeecCCCCcCcccccc---CCCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence 011344456666777777766666642 345666666666666555444 4666666666666
Q ss_pred cccccc
Q 036079 782 SRMDRV 787 (1399)
Q Consensus 782 s~~~~~ 787 (1399)
++|...
T Consensus 239 ~~n~l~ 244 (440)
T 3zyj_A 239 IQSQIQ 244 (440)
T ss_dssp TTCCCC
T ss_pred CCCcee
Confidence 665433
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=186.67 Aligned_cols=107 Identities=26% Similarity=0.299 Sum_probs=50.1
Q ss_pred cCCCCcccEEEecCCccccc-CccccCccccceeeccCccccccchh-hhccccccEEEcCCccccccchh--hhcccCc
Q 036079 543 LLNLPRLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQILPES-INSLYNLHTILLENCHRLKKLCK--DMGNLIK 618 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~ 618 (1399)
|.++++|++|++++|.++.+ |..|.++++|++|+|++|.|+.+|.. ++++++|++|++++| .+..+|. .+..+++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCC
Confidence 44555555555555555444 33455555555555555555544443 444555555555543 2334443 3445555
Q ss_pred ccEEEcCCCcccccCC-cccccccccCccceEE
Q 036079 619 LHHLRNSNVDSLEEMP-KGFGKLTCLLTLCTFV 650 (1399)
Q Consensus 619 L~~L~l~~n~~~~~lp-~~~~~L~~L~~L~l~~ 650 (1399)
|++|++++|..+..++ ..++++++|++|++.+
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 5555555543233332 3344444444444433
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=2.1e-17 Score=188.79 Aligned_cols=241 Identities=11% Similarity=0.053 Sum_probs=161.0
Q ss_pred cccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEEEccCCCccccCccccccCccCCcceE
Q 036079 958 QCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSL 1037 (1399)
Q Consensus 958 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L 1037 (1399)
+++|++|++++|.+.+..|..+..+++|+.|++++|.... .+.+..+++|++|++++|. ++.++. .++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~L~~L~Ls~n~-l~~l~~------~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNY-VQELLV------GPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEEETTCTTCCEEECCSSE-EEEEEE------CTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chhhhhcCCCCEEECcCCc-cccccC------CCCcCEE
Confidence 3577777888777777677778888888888888865433 3346778888888888887 555442 4788899
Q ss_pred EecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCcccccc-c-cccCccceeeecccc
Q 036079 1038 KIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHIAR-I-QLAPSLKRLIINSCH 1115 (1399)
Q Consensus 1038 ~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~-~-~~~~~L~~L~l~~c~ 1115 (1399)
++++|. +..++.. .+++|++|++++ +.++.++...+ ..+++|++|++++|......+. + ..+++|++|++++|.
T Consensus 105 ~l~~n~-l~~~~~~-~~~~L~~L~l~~-N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 105 HAANNN-ISRVSCS-RGQGKKNIYLAN-NKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp ECCSSC-CSEEEEC-CCSSCEEEECCS-SCCCSGGGBCT-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECCCCc-cCCcCcc-ccCCCCEEECCC-CCCCCccchhh-hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 988876 4444332 357899999988 56666655433 4578999999998754332222 2 345666666666542
Q ss_pred CcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCccccCceEEeeccCCcccccccccccc
Q 036079 1116 NLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQALKCLRVRFCSKLESFAESLDNTS 1195 (1399)
Q Consensus 1116 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 1195 (1399)
++. ++....+++
T Consensus 181 -l~~-------------------------------------------------------------------~~~~~~l~~ 192 (317)
T 3o53_A 181 -IYD-------------------------------------------------------------------VKGQVVFAK 192 (317)
T ss_dssp -CCE-------------------------------------------------------------------EECCCCCTT
T ss_pred -Ccc-------------------------------------------------------------------ccccccccc
Confidence 100 011112344
Q ss_pred cccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcCc-ccCccccCCCCCccEEEec
Q 036079 1196 LEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCENL-KALPNCMHNLTSLLCLEIG 1274 (1399)
Q Consensus 1196 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~ 1274 (1399)
|++|++++|. ++.+|..+..+++|++|++++|. +..+|..+..+++|+.|++++|+.. ..+|..+..+++|+.|+++
T Consensus 193 L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 193 LKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCEEECCCCc-CCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 5555555542 34455567778888888888864 6678887777888888888888776 4667777888888888887
Q ss_pred CCCCCc
Q 036079 1275 LCPRLI 1280 (1399)
Q Consensus 1275 ~c~~l~ 1280 (1399)
+|..+.
T Consensus 271 ~~~~l~ 276 (317)
T 3o53_A 271 TVKKLT 276 (317)
T ss_dssp HHHHHH
T ss_pred Cchhcc
Confidence 655443
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=3e-19 Score=225.23 Aligned_cols=130 Identities=15% Similarity=0.294 Sum_probs=56.0
Q ss_pred ccccEEEEeecCCCCccchhhc-cCCCccEEEEccCCCccc--cCCc-cCCCcccEEEccCCCccccCccccc---cCcc
Q 036079 959 CRLRFLELSYCEGLTRLPQALL-TLSSLTEMRIAHCTSLIS--FPEA-ALPSRLRTIDIEGCNALKSLPEAWM---HNSY 1031 (1399)
Q Consensus 959 ~~L~~L~ls~n~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~--~~~~-~~~~~L~~L~Ls~~~~l~~~~~~~~---~~~l 1031 (1399)
++|++|++++|.+.+..+..+. .+++|+.|++++|..+.. ++.. ..+++|++|++++|. ++.....+. ...+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcC
Confidence 4555555555554433333333 455666666655543332 2221 234555666665554 222111100 0124
Q ss_pred CCcceEEecCCC-Ccc--ccCC-CCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCC
Q 036079 1032 SSLQSLKIRYCK-SLV--SFPE-VSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNC 1091 (1399)
Q Consensus 1032 ~~L~~L~ls~~~-~l~--~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c 1091 (1399)
++|++|++++|. .+. .++. ...+++|++|++++|..++.++... ..+++|++|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL--QRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH--HHCTTCSEEECSBC
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH--hcCCcceEcccccc
Confidence 455555555543 110 0000 0123455555555554444433322 34555555555444
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=2.6e-18 Score=216.59 Aligned_cols=175 Identities=17% Similarity=0.223 Sum_probs=88.2
Q ss_pred ccCCcCcEEEeecCCCCCCCcc----ccccccEEEEeecCCCCc--cchhhccCCCccEEEEccCCCccc-----cCC-c
Q 036079 935 QDVRSLNRLQISRCPQLLSLPE----LQCRLRFLELSYCEGLTR--LPQALLTLSSLTEMRIAHCTSLIS-----FPE-A 1002 (1399)
Q Consensus 935 ~~l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~ls~n~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~-----~~~-~ 1002 (1399)
..+++|++|++++|......+. .+++|++|++++|...+. ++.....+++|++|++++|. +.. ++. .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 4556677777776653222221 236677777777643332 44444567777777777764 221 111 1
Q ss_pred cCCCcccEEEccCCCccccCccc-c--ccCccCCcceEEecCCCCccccCC-CCCCCCCcEEEecCCCC------Ccccc
Q 036079 1003 ALPSRLRTIDIEGCNALKSLPEA-W--MHNSYSSLQSLKIRYCKSLVSFPE-VSLPSRLRTIEIEGCYA------LKCLP 1072 (1399)
Q Consensus 1003 ~~~~~L~~L~Ls~~~~l~~~~~~-~--~~~~l~~L~~L~ls~~~~l~~~~~-~~~~~~L~~L~l~~c~~------l~~~~ 1072 (1399)
..+++|++|++++|. ..++.. + ....+++|++|++++|..+..++. ...+++|++|++++|.. +..++
T Consensus 181 ~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp TTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred hcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 245677777777765 111111 0 001257777777777654444332 23345677777655432 22222
Q ss_pred hhhhhcCCCCccEE-eecCCCCcccccc-ccccCccceeeecccc
Q 036079 1073 EAWMENSSTSLESL-NIYNCNSLTHIAR-IQLAPSLKRLIINSCH 1115 (1399)
Q Consensus 1073 ~~~~~~~l~~L~~L-~L~~c~~l~~~~~-~~~~~~L~~L~l~~c~ 1115 (1399)
..+ ..+++|+.| .+.+.. ...++. +..+++|++|++++|.
T Consensus 259 ~~l--~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 259 VAL--SGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp HHH--HTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCC
T ss_pred HHH--hcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCC
Confidence 222 456666666 333221 122222 2345666666666665
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=2.2e-16 Score=177.69 Aligned_cols=179 Identities=18% Similarity=0.139 Sum_probs=116.1
Q ss_pred CCcccEEEecCCcccccC-ccccCccccceeeccCcccccc-chhhhccccccEEEcCCccccccc-hhhhcccCcccEE
Q 036079 546 LPRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKKL-CKDMGNLIKLHHL 622 (1399)
Q Consensus 546 l~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L 622 (1399)
.++|++|++++|.++.+| ..|.++++|++|+|++|.++.+ |..|..+++|++|++++|..+..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 357888888888888775 5678888888888888888866 667888888888888886545555 5668888888888
Q ss_pred EcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEe
Q 036079 623 RNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLL 702 (1399)
Q Consensus 623 ~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 702 (1399)
++++|.+....|..+.++++|++|++.+|.+...
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------------------------- 144 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL---------------------------------------------- 144 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----------------------------------------------
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCccccc----------------------------------------------
Confidence 8888873333345577777777776644432210
Q ss_pred eecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceeee
Q 036079 703 EWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLEI 781 (1399)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L 781 (1399)
....+..+++|+.|++++|.+..+|...+ ..+++|+.|++++|.+....| .+..+++|+.|++
T Consensus 145 ---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 145 ---------------PDDTFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp ---------------CTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred ---------------CHhHhccCCCccEEECCCCcccccCHHHh-cCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 01123344556666666666665554322 235566666666666555434 4566666666666
Q ss_pred ccccc
Q 036079 782 SRMDR 786 (1399)
Q Consensus 782 s~~~~ 786 (1399)
++|..
T Consensus 209 ~~n~l 213 (285)
T 1ozn_A 209 FANNL 213 (285)
T ss_dssp CSSCC
T ss_pred CCCcC
Confidence 66543
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=6.5e-16 Score=173.77 Aligned_cols=177 Identities=18% Similarity=0.099 Sum_probs=131.8
Q ss_pred ccEEEecCCcccccCccccCccccceeeccCccccccc-hhhhccccccEEEcCCccccccchhhhcccCcccEEEcCCC
Q 036079 549 LRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILP-ESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNV 627 (1399)
Q Consensus 549 Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n 627 (1399)
-++++.+++.++.+|..+ .++|++|+|++|.|+.+| ..|..+++|++|++++|......|..|..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 378999999999999766 469999999999999886 56899999999999997554444788999999999999999
Q ss_pred cccccC-CcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEeeecC
Q 036079 628 DSLEEM-PKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLEWST 706 (1399)
Q Consensus 628 ~~~~~l-p~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 706 (1399)
..+..+ |..+..+++|++|++.++.+...
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------------------------------- 120 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQEL-------------------------------------------------- 120 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCC--------------------------------------------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEE--------------------------------------------------
Confidence 745555 56788888888887754432210
Q ss_pred CCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceeeecccc
Q 036079 707 DISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLEISRMD 785 (1399)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~Ls~~~ 785 (1399)
....+..+++|+.|++++|.+..+|...+ ..+++|+.|++++|.+....+ .+..+++|++|++++|.
T Consensus 121 -----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 121 -----------GPGLFRGLAALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp -----------CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred -----------CHhHhhCCcCCCEEECCCCcccccCHhHh-ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 11234456677888888888877765432 346778888888876655444 47777888888888775
Q ss_pred ccee
Q 036079 786 RVKS 789 (1399)
Q Consensus 786 ~~~~ 789 (1399)
....
T Consensus 189 l~~~ 192 (285)
T 1ozn_A 189 VAHV 192 (285)
T ss_dssp CCEE
T ss_pred cccc
Confidence 5444
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=5.5e-17 Score=184.79 Aligned_cols=203 Identities=19% Similarity=0.201 Sum_probs=112.0
Q ss_pred CCCcccEEEecCCccc-ccCccc--cCccccceeeccCccccccchhhhcc-----ccccEEEcCCccccccchhhhccc
Q 036079 545 NLPRLRVFSLHGYCVS-KLPNEI--GNLKHLRFLNLSGTEIQILPESINSL-----YNLHTILLENCHRLKKLCKDMGNL 616 (1399)
Q Consensus 545 ~l~~Lr~L~L~~n~i~-~lp~~~--~~l~~L~~L~Ls~n~i~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp~~i~~L 616 (1399)
++++|++|+|++|.++ .+|..+ ..+++|++|+|++|.++.+|..++.+ ++|++|++++|......|..|+.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5677777777777776 456654 67777777777777777667666666 677777777754434334667777
Q ss_pred CcccEEEcCCCccccc--CCccc--ccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhcc
Q 036079 617 IKLHHLRNSNVDSLEE--MPKGF--GKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLN 692 (1399)
Q Consensus 617 ~~L~~L~l~~n~~~~~--lp~~~--~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 692 (1399)
++|++|++++|.+.+. +|..+ +.+++|++|++.+|.+.. ........+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------------~~~~~~~~~~ 225 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET---------------------------PSGVCSALAA 225 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC---------------------------HHHHHHHHHH
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc---------------------------hHHHHHHHHh
Confidence 7777777777763332 23333 666666666664443221 0011111223
Q ss_pred CccCcCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCC
Q 036079 693 GKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQ 772 (1399)
Q Consensus 693 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~ 772 (1399)
++++|+.|+++.+..... .....+..+++|+.|++++|.++.+|.+++ ++|+.|++++|.+... |.+..
T Consensus 226 ~l~~L~~L~Ls~N~l~~~------~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~-p~~~~ 294 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDA------AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN-PSPDE 294 (312)
T ss_dssp TTCCCSEEECTTSCCCSS------CCCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC-CCTTT
T ss_pred cCCCCCEEECCCCcCCcc------cchhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC-hhHhh
Confidence 344455555543322110 001223334556666666666655555542 4566666666554333 44555
Q ss_pred CCccceeeecccc
Q 036079 773 LPLLKHLEISRMD 785 (1399)
Q Consensus 773 l~~L~~L~Ls~~~ 785 (1399)
+++|++|++++|.
T Consensus 295 l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 295 LPQVGNLSLKGNP 307 (312)
T ss_dssp SCEEEEEECTTCT
T ss_pred CCCCCEEeccCCC
Confidence 5666666665553
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=8.4e-18 Score=191.57 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=30.3
Q ss_pred CCccceeeecCCcCcccCCCCCC-CCcceEEecccCc--ccccCCCCCccceEEEeCCC
Q 036079 832 FPKLRTLSLVCCSKLQGTLPECL-PLLEVLDIQCCGQ--LLVTIKYLPALSGLQINGCK 887 (1399)
Q Consensus 832 ~~~L~~L~L~~c~~l~~~~p~~l-~~L~~L~l~~~~~--~~~~~~~l~~L~~L~l~~n~ 887 (1399)
+++|++|++++ +.++ .+|..+ ++|++|++++|.. +|. +..+++|++|++++|+
T Consensus 252 l~~L~~L~Ls~-N~l~-~ip~~~~~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 252 PSQLNSLNLSF-TGLK-QVPKGLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTCCEEECTT-SCCS-SCCSSCCSEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred cCCCCEEECCC-CccC-hhhhhccCCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 44555555555 2444 444433 3555555555522 233 6778888888888887
No 75
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.64 E-value=2.8e-15 Score=178.95 Aligned_cols=316 Identities=12% Similarity=0.011 Sum_probs=188.7
Q ss_pred CCccccchhhHHHHHHHH-hccCcCCCCCcEEEEE--ECCCCChHHHHHHHHhcCcchh---ccCC-ceEEEEeCCCCCH
Q 036079 148 EAKVYGREKDKEAIVELL-LRDDLRADDGFSVISI--NGMGGVGKTTLAQLVYNDDRVQ---RHFE-IKAWTCVSEEFDV 220 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~~~~~~~~~---~~f~-~~~wv~~~~~~~~ 220 (1399)
+..|+||+++++++.+++ ...........+.+.| +|++|+||||||+++++..... ..+. .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999998 5321100024467777 9999999999999999743221 0122 3578887777788
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhc--CCeEEEEEcccCccC------hhhHhhhcccCCCC---C--CCc
Q 036079 221 FRISKSILNSVASDQCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNES------YNYWSILSCPFEAV---A--PGS 287 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~k~~LiVlDdv~~~~------~~~~~~l~~~~~~~---~--~~s 287 (1399)
.+++.+++.+++........+..++...+.+.+. +++++||+||+|... ...+..+...+... + .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 8999999999876533223345556666666664 789999999997732 23333333332211 2 344
Q ss_pred EEEEecCChhhhhcc--------C-CCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcC------CC
Q 036079 288 KIVVTTRNLGVTVNM--------G-ADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCK------GL 352 (1399)
Q Consensus 288 ~iivTtr~~~~~~~~--------~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~ 352 (1399)
.||+||+...+...+ . ....+.+.+++.++++++|...+..... .....++.+..|++.++ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR--DTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC--TTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHhccCCCc
Confidence 588788765432111 1 1123899999999999999765421100 01112567788999999 99
Q ss_pred hHHHHHHHhhh---c---CCC--ChhHHHHHHhhhhcccccccCCchhhhhccccCCchhhhhhhhhccccC--CCcccC
Q 036079 353 PLAAKTLGSLL---R---GKD--DPRDWEFVLNTDIWDLQEHKCDIIPALGVSYHFLPPQLKQCFAYCSLFP--KDYEFH 422 (1399)
Q Consensus 353 Plal~~~~~~l---~---~~~--~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp--~~~~i~ 422 (1399)
|..+..++... . +.. +.+.+..+...... ...+.-++..||++.+.++..+|.+. .+..+.
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 97665554321 1 111 22333333322100 23455678899999999999888653 233455
Q ss_pred hHHHHHHHH--H-cCCccccCCcccHHHHHHHHHHHHHhcccccccCC---CCCeEEEcchh
Q 036079 423 EEEIILLWI--A-EGFLHQANSRRKLEDLGRDFVRELYSRSLFQQSSK---DASLFVMHDLI 478 (1399)
Q Consensus 423 ~~~l~~~w~--~-~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~---~~~~~~~H~lv 478 (1399)
...+...+. + .-. . . ..........++++|++.++|..... ....|++|++.
T Consensus 330 ~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMY-N-V--KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHHHHS-C-C--CCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHHHhhc-C-C--CCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 555555442 2 111 0 0 00113456788999999999976432 23445566554
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=6e-16 Score=187.17 Aligned_cols=235 Identities=11% Similarity=0.056 Sum_probs=146.9
Q ss_pred cccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEEEccCCCccccCccccccCccCCcceE
Q 036079 958 QCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSL 1037 (1399)
Q Consensus 958 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L 1037 (1399)
+++|++|++++|.+.+..|..+..+++|+.|++++|...... .+..+++|++|++++|. ++.+|. .++|+.|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~-l~~l~~------~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNY-VQELLV------GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSE-EEEEEE------CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCc-CCCCCC------CCCcCEE
Confidence 346777777777777766777888888888888886543333 36677888888888886 554443 3678888
Q ss_pred EecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCcccccc-c-cccCccceeeecccc
Q 036079 1038 KIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHIAR-I-QLAPSLKRLIINSCH 1115 (1399)
Q Consensus 1038 ~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~-~-~~~~~L~~L~l~~c~ 1115 (1399)
++++|.. ..++. ..+++|+.|++++| .++.++...+ ..+++|+.|++++|......+. + ..+++|++|++++|.
T Consensus 105 ~L~~N~l-~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNI-SRVSC-SRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCC-CCEEE-CCCSSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcC-CCCCc-cccCCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 8887653 33332 23467777777773 4555433322 4567777777777643332222 2 134444444444432
Q ss_pred CcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCccccCceEEeeccCCcccccccccccc
Q 036079 1116 NLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQALKCLRVRFCSKLESFAESLDNTS 1195 (1399)
Q Consensus 1116 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 1195 (1399)
+..++....+++
T Consensus 181 --------------------------------------------------------------------l~~~~~~~~l~~ 192 (487)
T 3oja_A 181 --------------------------------------------------------------------IYDVKGQVVFAK 192 (487)
T ss_dssp --------------------------------------------------------------------CCEEECCCCCTT
T ss_pred --------------------------------------------------------------------cccccccccCCC
Confidence 111111222345
Q ss_pred cccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcCc-ccCccccCCCCCccEEEec
Q 036079 1196 LEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCENL-KALPNCMHNLTSLLCLEIG 1274 (1399)
Q Consensus 1196 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~ 1274 (1399)
|+.|++++|. ++.+|..+..+++|+.|++++|. +..+|..+..+++|+.|++++|+.. ..+|..+..++.|+.++++
T Consensus 193 L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 193 LKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5555555553 33455557778888888888865 5667877777788888888887765 3566677777777777765
No 77
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=5.7e-15 Score=172.09 Aligned_cols=292 Identities=13% Similarity=0.137 Sum_probs=179.4
Q ss_pred ccCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC------C
Q 036079 146 VNEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF------D 219 (1399)
Q Consensus 146 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~ 219 (1399)
..+..|+||+++++++.+++.. + +++.|+|++|+|||||++++++.. . ++|+++.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 3456799999999999999853 1 589999999999999999998732 1 6788765432 5
Q ss_pred HHHHHHHHHHhccC-----------------CCCCCcccHHHHHHHHHHHhcC-CeEEEEEcccCccCh-------hhHh
Q 036079 220 VFRISKSILNSVAS-----------------DQCTDKDDLNLLQEKLKKQLSG-KKFLLVLDDVWNESY-------NYWS 274 (1399)
Q Consensus 220 ~~~~~~~il~~l~~-----------------~~~~~~~~~~~~~~~l~~~l~~-k~~LiVlDdv~~~~~-------~~~~ 274 (1399)
...++..+.+.+.. .........+++.+.+.+..+. ++++||+||++.... ..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 56666666665432 0000123455666666665543 499999999977432 2233
Q ss_pred hhcccCCCCCCCcEEEEecCChhhhhc----------cC-C-CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHH
Q 036079 275 ILSCPFEAVAPGSKIVVTTRNLGVTVN----------MG-A-DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVG 342 (1399)
Q Consensus 275 ~l~~~~~~~~~~s~iivTtr~~~~~~~----------~~-~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 342 (1399)
.+..... ...+.++|+|++...+... .. . ...+++.+|+.+|+.+++........ .. ..++.+
T Consensus 154 ~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~-~~---~~~~~~ 228 (350)
T 2qen_A 154 LFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN-LD---VPENEI 228 (350)
T ss_dssp HHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT-CC---CCHHHH
T ss_pred HHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC-CC---CCHHHH
Confidence 3322221 1247789999887543111 11 1 13689999999999999987542211 11 124677
Q ss_pred HHHHHHcCCChHHHHHHHhhhcCCCChhHHHH-HHhhhhcccccccCCchhhhhccccCC---chhhhhhhhhccccCCC
Q 036079 343 EKIAMKCKGLPLAAKTLGSLLRGKDDPRDWEF-VLNTDIWDLQEHKCDIIPALGVSYHFL---PPQLKQCFAYCSLFPKD 418 (1399)
Q Consensus 343 ~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~~f~~~a~fp~~ 418 (1399)
..|++.++|+|+++..++..+....+...+.. +.+. +...+.-.+..+ ++..+..+..+|. +
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~~~~~~~~~~l~~la~---g 294 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-----------AKGLIMGELEELRRRSPRYVDILRAIAL---G 294 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT---T
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH-----------HHHHHHHHHHHHHhCChhHHHHHHHHHh---C
Confidence 89999999999999999876532212222211 1111 001111111122 6788999999887 2
Q ss_pred cccChHHHHHHHHHcCCccccCCcccHHHHHHHHHHHHHhcccccccCCCCCeEEE-cchhHHHH
Q 036079 419 YEFHEEEIILLWIAEGFLHQANSRRKLEDLGRDFVRELYSRSLFQQSSKDASLFVM-HDLINDLT 482 (1399)
Q Consensus 419 ~~i~~~~l~~~w~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~-H~lv~~~~ 482 (1399)
.++...+........ - +. .......+++.|++.++|...+ ..|.+ |.+++++.
T Consensus 295 -~~~~~~l~~~~~~~~-~-----~~-~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 295 -YNRWSLIRDYLAVKG-T-----KI-PEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVL 348 (350)
T ss_dssp -CCSHHHHHHHHHHTT-C-----CC-CHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHH
T ss_pred -CCCHHHHHHHHHHHh-C-----CC-CHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHH
Confidence 234455554432211 0 01 1345678999999999998652 34655 67777664
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=2.6e-15 Score=167.10 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=78.7
Q ss_pred cCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEE
Q 036079 543 LLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHL 622 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 622 (1399)
+..+++|+.|++++|.+..++ .+..+++|++|+|++|.++.++ .+..+++|++|++++|......|..++.+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345678888999998888775 4788889999999999888765 78888899999998865433334447888999999
Q ss_pred EcCCCcccccCCc-ccccccccCccceEEe
Q 036079 623 RNSNVDSLEEMPK-GFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 623 ~l~~n~~~~~lp~-~~~~L~~L~~L~l~~~ 651 (1399)
++++|. +..+|. .++.+++|++|++.+|
T Consensus 115 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 115 VLVENQ-LQSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCc-CCccCHHHhccCCCCCEEECCCC
Confidence 998887 455553 3566666666665443
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=3.3e-15 Score=167.32 Aligned_cols=176 Identities=20% Similarity=0.152 Sum_probs=114.3
Q ss_pred cCCCCcccEEEecCCcccccCccccCccccceeeccCcccccc-chhhhccccccEEEcCCccccccchhhhcccCcccE
Q 036079 543 LLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHH 621 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 621 (1399)
+.++++++.++++++.++.+|..+. ++|++|+|++|.|+.+ |..|..+++|++|++++| .+..+|.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCE
Confidence 5567778888888888888877664 5788888888888865 456788888888888875 45556553 77788888
Q ss_pred EEcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceE
Q 036079 622 LRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALL 701 (1399)
Q Consensus 622 L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 701 (1399)
|++++|. +..+|..+..+++|++|++.+|.+...
T Consensus 82 L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l--------------------------------------------- 115 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSL--------------------------------------------- 115 (290)
T ss_dssp EECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCC---------------------------------------------
T ss_pred EECCCCc-CCcCchhhccCCCCCEEECCCCcCccc---------------------------------------------
Confidence 8888887 667777777777777777655433210
Q ss_pred eeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceee
Q 036079 702 LEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLE 780 (1399)
Q Consensus 702 l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~ 780 (1399)
....+..+++|+.|++++|.+..+|...+ ..+++|+.|++++|.+....+ .+..+++|+.|+
T Consensus 116 ----------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 116 ----------------PLGALRGLGELQELYLKGNELKTLPPGLL-TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp ----------------CSSTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred ----------------CHHHHcCCCCCCEEECCCCCCCccChhhc-ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 01123344556666666666666555433 245566666666665544333 245566666666
Q ss_pred ecccc
Q 036079 781 ISRMD 785 (1399)
Q Consensus 781 Ls~~~ 785 (1399)
+++|.
T Consensus 179 L~~N~ 183 (290)
T 1p9a_G 179 LQENS 183 (290)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 66654
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=6.9e-15 Score=163.55 Aligned_cols=98 Identities=20% Similarity=0.307 Sum_probs=53.7
Q ss_pred cccEEEecCCcccccCccccCccccceeeccCccccccch-hhhccccccEEEcCCccccccchhh-hcccCcccEEEcC
Q 036079 548 RLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPE-SINSLYNLHTILLENCHRLKKLCKD-MGNLIKLHHLRNS 625 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 625 (1399)
..+.++++++.++.+|..+. ++|++|+|++|.|+.+|. .|.++++|++|++++| .+..+|.. |..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence 34556666666666655443 456666666666665543 4566666666666653 33444433 3556666666666
Q ss_pred CCcccccCCc-ccccccccCccceE
Q 036079 626 NVDSLEEMPK-GFGKLTCLLTLCTF 649 (1399)
Q Consensus 626 ~n~~~~~lp~-~~~~L~~L~~L~l~ 649 (1399)
+|. +..+|. .+..+++|++|++.
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEECC
T ss_pred CCc-CCcCCHhHcccccCCCEEECC
Confidence 665 444442 34555555555543
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=8.7e-16 Score=185.75 Aligned_cols=232 Identities=12% Similarity=0.022 Sum_probs=147.3
Q ss_pred CCCccceeeecCCcCcccCCCC---CCCCcceEEecccCcc-cccCCCCCccceEEEeCCCCccccCCCCCCCccceeec
Q 036079 831 GFPKLRTLSLVCCSKLQGTLPE---CLPLLEVLDIQCCGQL-LVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFE 906 (1399)
Q Consensus 831 ~~~~L~~L~L~~c~~l~~~~p~---~l~~L~~L~l~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 906 (1399)
.+++|++|++++| .+++..|. .+++|++|++++|... ...+..+++|++|++++|.+..
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~---------------- 94 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE---------------- 94 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE----------------
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC----------------
Confidence 4668888888884 66643332 3455666666555321 1125555555555555554111
Q ss_pred cCCCCcceEEEeecccccccccccccccccCCcCcEEEeecCCCCCCCccccccccEEEEeecCCCCccchhhccCCCcc
Q 036079 907 KGLPKLEKVGIVNVRELTYLWWSETRLLQDVRSLNRLQISRCPQLLSLPELQCRLRFLELSYCEGLTRLPQALLTLSSLT 986 (1399)
Q Consensus 907 ~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~ 986 (1399)
+...++|+.|++++|......+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 95 ---------------------------l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 147 (487)
T 3oja_A 95 ---------------------------LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (487)
T ss_dssp ---------------------------EEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEE
T ss_pred ---------------------------CCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCC
Confidence 22336777777777775554444567788888888887777777778888888
Q ss_pred EEEEccCCCccccCC-cc-CCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecC
Q 036079 987 EMRIAHCTSLISFPE-AA-LPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEG 1064 (1399)
Q Consensus 987 ~L~l~~~~~l~~~~~-~~-~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~ 1064 (1399)
.|++++|......|. +. .+++|++|++++|. ++.+|... .+++|+.|++++|......|.+..+++|+.|++++
T Consensus 148 ~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223 (487)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT
T ss_pred EEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccc---cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC
Confidence 888888655443442 22 56788888888887 44444432 27788888888866433334455567888888888
Q ss_pred CCCCcccchhhhhcCCCCccEEeecCCCCc-cccc-cccccCccceeeecc
Q 036079 1065 CYALKCLPEAWMENSSTSLESLNIYNCNSL-THIA-RIQLAPSLKRLIINS 1113 (1399)
Q Consensus 1065 c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l-~~~~-~~~~~~~L~~L~l~~ 1113 (1399)
+.++.+|..+ ..+++|+.|++++|+.. ..++ .+..++.|+.+++..
T Consensus 224 -N~l~~lp~~l--~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 224 -NKLVLIEKAL--RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp -SCCCEECTTC--CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CcCcccchhh--ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 5666777654 56788888888887655 2333 245666777776653
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=1.4e-14 Score=157.90 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=96.3
Q ss_pred CCCCccccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC--CccCCCcccEEEccCCCccccCcccccc
Q 036079 951 LLSLPELQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP--EAALPSRLRTIDIEGCNALKSLPEAWMH 1028 (1399)
Q Consensus 951 ~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~Ls~~~~l~~~~~~~~~ 1028 (1399)
+..+|..+++|++|++++|.+.+..+..+..+++|++|++++|..+..++ .+..+++|++|++++|+.++.++...+.
T Consensus 23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 56666655689999999998776666678889999999999976566666 3566788888888884446666654333
Q ss_pred CccCCcceEEecCCCCccccCCCCCCCCCc---EEEecCCCCCcccchhhhhcCCCCcc-EEeecCC
Q 036079 1029 NSYSSLQSLKIRYCKSLVSFPEVSLPSRLR---TIEIEGCYALKCLPEAWMENSSTSLE-SLNIYNC 1091 (1399)
Q Consensus 1029 ~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~---~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~L~~c 1091 (1399)
. +++|++|++++|. ++.+|.+..+++|+ +|++++|..++.++...+ ..+++|+ .|++++|
T Consensus 103 ~-l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 103 E-LPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNN 166 (239)
T ss_dssp C-CTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSC
T ss_pred C-CCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccc-cchhcceeEEEcCCC
Confidence 2 7888888888865 55566655566666 777777546666665433 3456666 6666654
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=2.9e-14 Score=165.06 Aligned_cols=238 Identities=20% Similarity=0.228 Sum_probs=149.6
Q ss_pred cEEEeecCCCCCCCcc-ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCC--ccCCCcccEEEccCCC
Q 036079 941 NRLQISRCPQLLSLPE-LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPE--AALPSRLRTIDIEGCN 1017 (1399)
Q Consensus 941 ~~L~l~~~~~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~Ls~~~ 1017 (1399)
+.++.+++. ++.+|. .+.++++|+|++|.+....+..|.++++|++|+|++|.....++. +..++++.++.+.+++
T Consensus 12 ~~v~C~~~~-Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTT-CCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCC-CCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 345555554 566776 456888999998886544445688888899999988776666653 4556676665444444
Q ss_pred ccccCccccccCccCCcceEEecCCCCccccCCCCCC--CCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCcc
Q 036079 1018 ALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLP--SRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLT 1095 (1399)
Q Consensus 1018 ~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~--~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~ 1095 (1399)
.+..++...+.. +++|++|++++|. +..++...+. ..+..|++.+++.++.++...+......++.|++++| .++
T Consensus 91 ~l~~l~~~~f~~-l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~ 167 (350)
T 4ay9_X 91 NLLYINPEAFQN-LPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQ 167 (350)
T ss_dssp TCCEECTTSBCC-CTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCC
T ss_pred cccccCchhhhh-ccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-ccc
Confidence 466665443332 7788888888765 4555543332 4556677766666776665544333345556666653 122
Q ss_pred ccccccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCccccCce
Q 036079 1096 HIARIQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQALKC 1175 (1399)
Q Consensus 1096 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 1175 (1399)
.++.
T Consensus 168 ~i~~---------------------------------------------------------------------------- 171 (350)
T 4ay9_X 168 EIHN---------------------------------------------------------------------------- 171 (350)
T ss_dssp EECT----------------------------------------------------------------------------
T ss_pred CCCh----------------------------------------------------------------------------
Confidence 2111
Q ss_pred EEeeccCCcccccccccccccccccccccccccccCC-cccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcC
Q 036079 1176 LRVRFCSKLESFAESLDNTSLEEITISWLENLKILPG-GLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCEN 1254 (1399)
Q Consensus 1176 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 1254 (1399)
..+..++|++|++++++.++.+|. .+..+++|++|++++| .++.+|... +.+|+.|.+.+|+.
T Consensus 172 -------------~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~--~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 172 -------------SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG--LENLKKLRARSTYN 235 (350)
T ss_dssp -------------TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS--CTTCCEEECTTCTT
T ss_pred -------------hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh--hccchHhhhccCCC
Confidence 001122344455555555556664 3577888888888886 477787654 46788888888888
Q ss_pred cccCccccCCCCCccEEEecC
Q 036079 1255 LKALPNCMHNLTSLLCLEIGL 1275 (1399)
Q Consensus 1255 l~~lp~~~~~l~~L~~L~l~~ 1275 (1399)
++.+|. +.++++|+.+++.+
T Consensus 236 l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 236 LKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCC-TTTCCSCCEEECSC
T ss_pred cCcCCC-chhCcChhhCcCCC
Confidence 888874 77888888888865
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=4e-15 Score=162.27 Aligned_cols=174 Identities=16% Similarity=0.109 Sum_probs=121.8
Q ss_pred cccEEEecCCcccccCc-cccCccccceeeccCcc-ccccch-hhhccccccEEEcCCccccccch-hhhcccCcccEEE
Q 036079 548 RLRVFSLHGYCVSKLPN-EIGNLKHLRFLNLSGTE-IQILPE-SINSLYNLHTILLENCHRLKKLC-KDMGNLIKLHHLR 623 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~-~~~~l~~L~~L~Ls~n~-i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 623 (1399)
+|++|++++|.++.+|. .|.++++|++|++++|. ++.+|. .|.++++|++|++++|+.+..+| ..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78888998888888854 78888889999998886 887765 67888888899888744566665 4578888888888
Q ss_pred cCCCcccccCCcccccccccC---ccceEEe-ccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCc
Q 036079 624 NSNVDSLEEMPKGFGKLTCLL---TLCTFVV-GKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKA 699 (1399)
Q Consensus 624 l~~n~~~~~lp~~~~~L~~L~---~L~l~~~-~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~ 699 (1399)
+++|. +..+|. ++.+++|+ +|++.+| .+.. +
T Consensus 112 l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~------------i------------------------------- 146 (239)
T 2xwt_C 112 IFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTS------------I------------------------------- 146 (239)
T ss_dssp EEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCE------------E-------------------------------
T ss_pred CCCCC-Cccccc-cccccccccccEEECCCCcchhh------------c-------------------------------
Confidence 88887 666775 66666666 5555433 2110 0
Q ss_pred eEeeecCCCCchhHHHHHHhccCCCCCCCc-eEEEeecCCCCCCcccCcCCCcceeEEEeeCCC-CCCCCC-CCCCC-Cc
Q 036079 700 LLLEWSTDISDAAEVETRVLDKLEPHQKLE-KLTITGYGGTKFPNWLGESSFLKLLFLRFEGCG-KCTSLP-SVGQL-PL 775 (1399)
Q Consensus 700 L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~-~~~~l~-~l~~l-~~ 775 (1399)
....+..+++|+ .|++++|.+..+|...+. .++|+.|++++|. +....+ .+..+ ++
T Consensus 147 ------------------~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~--~~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 147 ------------------PVNAFQGLCNETLTLKLYNNGFTSVQGYAFN--GTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp ------------------CTTTTTTTBSSEEEEECCSCCCCEECTTTTT--TCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred ------------------CcccccchhcceeEEEcCCCCCcccCHhhcC--CCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 011244566777 777778877777776553 2678888888774 443333 46677 77
Q ss_pred cceeeeccccc
Q 036079 776 LKHLEISRMDR 786 (1399)
Q Consensus 776 L~~L~Ls~~~~ 786 (1399)
|+.|++++|..
T Consensus 207 L~~L~l~~N~l 217 (239)
T 2xwt_C 207 PSLLDVSQTSV 217 (239)
T ss_dssp CSEEECTTCCC
T ss_pred CcEEECCCCcc
Confidence 88888877643
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=4.7e-15 Score=168.04 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=76.5
Q ss_pred CCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEc
Q 036079 545 NLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRN 624 (1399)
Q Consensus 545 ~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 624 (1399)
.+++|+.|++++|.+..+| .+..+++|++|+|++|.++.+|. +..+++|++|++++|. +..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 4567888888888888776 57788888888888888887776 8888888888888854 55565 5788888888888
Q ss_pred CCCcccccCCcccccccccCccceEEec
Q 036079 625 SNVDSLEEMPKGFGKLTCLLTLCTFVVG 652 (1399)
Q Consensus 625 ~~n~~~~~lp~~~~~L~~L~~L~l~~~~ 652 (1399)
++|. +..+|. +..+++|++|++.+|.
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQ 140 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCCc
Confidence 8887 555554 6777777777665543
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.2e-14 Score=161.69 Aligned_cols=175 Identities=22% Similarity=0.261 Sum_probs=130.5
Q ss_pred CcccEEEecCCcccccC-ccccCccccceeeccCccccccchh-hhccccccEEEcCCccccccchh-hhcccCcccEEE
Q 036079 547 PRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQILPES-INSLYNLHTILLENCHRLKKLCK-DMGNLIKLHHLR 623 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 623 (1399)
++|+.|+|++|.++.+| ..|.++++|++|+|++|.|+.+|.. +..+++|++|++++|. +..+|. .+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEE
Confidence 57999999999999886 5799999999999999999998775 5889999999999965 555554 579999999999
Q ss_pred cCCCcccccCC-cccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEe
Q 036079 624 NSNVDSLEEMP-KGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLL 702 (1399)
Q Consensus 624 l~~n~~~~~lp-~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 702 (1399)
+++|. +..+| ..|+.+++|++|++.+|.+...
T Consensus 116 l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------------------------------- 148 (270)
T 2o6q_A 116 LDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSL---------------------------------------------- 148 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC----------------------------------------------
T ss_pred CCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCcc----------------------------------------------
Confidence 99998 55555 4578888888887755433210
Q ss_pred eecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceeee
Q 036079 703 EWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLEI 781 (1399)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L 781 (1399)
....+..+++|+.|++++|.+..+|...+ ..+++|+.|++++|.+....+ .+..+++|+.|++
T Consensus 149 ---------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 149 ---------------PKGVFDKLTSLKELRLYNNQLKRVPEGAF-DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp ---------------CTTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ---------------CHhHccCCcccceeEecCCcCcEeChhHh-ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 01123445677777777777777765433 346777788887776655444 3667777888887
Q ss_pred cccc
Q 036079 782 SRMD 785 (1399)
Q Consensus 782 s~~~ 785 (1399)
++|+
T Consensus 213 ~~N~ 216 (270)
T 2o6q_A 213 QENP 216 (270)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7764
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=6.5e-15 Score=164.98 Aligned_cols=181 Identities=21% Similarity=0.088 Sum_probs=143.3
Q ss_pred HhhhcCCCCcccEEEecCCccccc-CccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccC
Q 036079 539 VLQMLLNLPRLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLI 617 (1399)
Q Consensus 539 ~~~~~~~l~~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 617 (1399)
+|..+. +.+++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|.. +.+++|++|++++| .+..+|..+..++
T Consensus 25 ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~ 100 (290)
T 1p9a_G 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLP 100 (290)
T ss_dssp CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCT
T ss_pred CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCC
Confidence 444443 6899999999999987 67899999999999999999988765 88999999999995 6778999899999
Q ss_pred cccEEEcCCCcccccCC-cccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccC
Q 036079 618 KLHHLRNSNVDSLEEMP-KGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLN 696 (1399)
Q Consensus 618 ~L~~L~l~~n~~~~~lp-~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~ 696 (1399)
+|++|++++|. +..+| ..|..+++|++|++.+|.+...
T Consensus 101 ~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~---------------------------------------- 139 (290)
T 1p9a_G 101 ALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTL---------------------------------------- 139 (290)
T ss_dssp TCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCC----------------------------------------
T ss_pred CCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCcc----------------------------------------
Confidence 99999999998 66666 5689999999998765543210
Q ss_pred cCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCCCCcc
Q 036079 697 LKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQLPLL 776 (1399)
Q Consensus 697 L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L 776 (1399)
....+..+++|+.|++++|.+..+|...+ ..+++|+.|++++|.+....+.+...++|
T Consensus 140 ---------------------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-~~l~~L~~L~L~~N~l~~ip~~~~~~~~L 197 (290)
T 1p9a_G 140 ---------------------PPGLLTPTPKLEKLSLANNNLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLL 197 (290)
T ss_dssp ---------------------CTTTTTTCTTCCEEECTTSCCSCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCCC
T ss_pred ---------------------ChhhcccccCCCEEECCCCcCCccCHHHh-cCcCCCCEEECCCCcCCccChhhcccccC
Confidence 01224456778888888888888887654 35788899999988876555567778889
Q ss_pred ceeeeccccc
Q 036079 777 KHLEISRMDR 786 (1399)
Q Consensus 777 ~~L~Ls~~~~ 786 (1399)
+.|++++|+.
T Consensus 198 ~~l~L~~Np~ 207 (290)
T 1p9a_G 198 PFAFLHGNPW 207 (290)
T ss_dssp SEEECCSCCB
T ss_pred CeEEeCCCCc
Confidence 9999988753
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=7.9e-15 Score=163.98 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=68.9
Q ss_pred CcccEEEecCCcccccCc-cccCccccceeeccCccccccch-hhhccccccEEEcCCccccccchhhhcccCcccEEEc
Q 036079 547 PRLRVFSLHGYCVSKLPN-EIGNLKHLRFLNLSGTEIQILPE-SINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRN 624 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 624 (1399)
++|++|++++|.++.++. .|.++++|++|+|++|.++.+|. .+..+++|++|++++|......|..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 357777777777776643 67777777777777777776543 5677777777777775433333455777777777777
Q ss_pred CCCcccccCCc-ccccccccCccceEEecc
Q 036079 625 SNVDSLEEMPK-GFGKLTCLLTLCTFVVGK 653 (1399)
Q Consensus 625 ~~n~~~~~lp~-~~~~L~~L~~L~l~~~~~ 653 (1399)
++|. +..++. .++.+++|++|++.+|.+
T Consensus 108 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 136 (276)
T 2z62_A 108 VETN-LASLENFPIGHLKTLKELNVAHNLI 136 (276)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CCCC-ccccCchhcccCCCCCEEECcCCcc
Confidence 7776 444443 466666777666655543
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=5.4e-15 Score=165.36 Aligned_cols=194 Identities=20% Similarity=0.170 Sum_probs=148.1
Q ss_pred CCCcchhhHHhhhcCCCCcccEEEecCCcccccC-ccccCccccceeeccCccccccc-hhhhccccccEEEcCCccccc
Q 036079 530 YEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQILP-ESINSLYNLHTILLENCHRLK 607 (1399)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~ 607 (1399)
+++|.+....+..|.++++|++|++++|.+..++ ..|.++++|++|+|++|.++.+| ..+.++++|++|++++|. +.
T Consensus 35 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~ 113 (276)
T 2z62_A 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LA 113 (276)
T ss_dssp CTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CC
T ss_pred CCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-cc
Confidence 4556665544557999999999999999999885 57999999999999999999775 679999999999999965 44
Q ss_pred cchh-hhcccCcccEEEcCCCccccc--CCcccccccccCccceEEeccCCC--CChhcccCcccccCceEEeccCCCCC
Q 036079 608 KLCK-DMGNLIKLHHLRNSNVDSLEE--MPKGFGKLTCLLTLCTFVVGKDGG--SGLRELKSLTHLQGTLKISKLENVKD 682 (1399)
Q Consensus 608 ~lp~-~i~~L~~L~~L~l~~n~~~~~--lp~~~~~L~~L~~L~l~~~~~~~~--~~~~~L~~L~~L~~~l~~~~l~~~~~ 682 (1399)
.++. .++.+++|++|++++|. +.. +|..++.+++|++|++.+|.+... ..+..+.
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------------------- 173 (276)
T 2z62_A 114 SLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH------------------- 173 (276)
T ss_dssp CSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-------------------
T ss_pred ccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh-------------------
Confidence 4544 69999999999999998 444 688899999999999876654321 0111111
Q ss_pred cchhhhhhccCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCCc-eEEEeecCCCCCCcccCcCCCcceeEEEeeCC
Q 036079 683 VGDAREAQLNGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLE-KLTITGYGGTKFPNWLGESSFLKLLFLRFEGC 761 (1399)
Q Consensus 683 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~ 761 (1399)
.++.+. .|++++|.+..+|...+. ..+|+.|++++|
T Consensus 174 -----------------------------------------~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n 210 (276)
T 2z62_A 174 -----------------------------------------QMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTN 210 (276)
T ss_dssp -----------------------------------------TCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSS
T ss_pred -----------------------------------------hccccceeeecCCCcccccCccccC--CCcccEEECCCC
Confidence 122222 677788888877766543 448999999998
Q ss_pred CCCCCCC-CCCCCCccceeeecccccc
Q 036079 762 GKCTSLP-SVGQLPLLKHLEISRMDRV 787 (1399)
Q Consensus 762 ~~~~~l~-~l~~l~~L~~L~Ls~~~~~ 787 (1399)
.+....+ .+..+++|+.|++++|+..
T Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 211 QLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ceeecCHhHhcccccccEEEccCCccc
Confidence 8765555 3688999999999988543
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=5.7e-14 Score=164.20 Aligned_cols=291 Identities=13% Similarity=0.089 Sum_probs=171.6
Q ss_pred cCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC-----CCHH
Q 036079 147 NEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE-----FDVF 221 (1399)
Q Consensus 147 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~ 221 (1399)
.+..|+||+++++++.+ +. . +++.|+|++|+|||||++++++. ... ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 72 1 58999999999999999999873 221 2578887643 3444
Q ss_pred HHHHHHHHhccC--------------------CCCC--------CcccHHHHHHHHHHHhcCCeEEEEEcccCccCh---
Q 036079 222 RISKSILNSVAS--------------------DQCT--------DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY--- 270 (1399)
Q Consensus 222 ~~~~~il~~l~~--------------------~~~~--------~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~--- 270 (1399)
..+..+.+.+.. .... .....+++.+.+.+..+ ++++||+||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 444444433210 0000 12234555555544333 499999999977432
Q ss_pred hhHhhhcccCCCCCCCcEEEEecCChhhhhc----------cC-C-CCceecCCCChhhHHHHHHHhhcCCCCCCCChhh
Q 036079 271 NYWSILSCPFEAVAPGSKIVVTTRNLGVTVN----------MG-A-DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSL 338 (1399)
Q Consensus 271 ~~~~~l~~~~~~~~~~s~iivTtr~~~~~~~----------~~-~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (1399)
..|......+.....+.++|+|+|....... .. . ...+.+.+|+.+|+.+++........ ... +.
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~-~~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD-IDF-KD- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT-CCC-CC-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC-CCC-Cc-
Confidence 1121112222222246789999997653211 11 1 13688999999999999987542111 111 11
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHH-HhhhhcccccccCCchhhhh-ccc--cCCchhhhhhhhhccc
Q 036079 339 KEVGEKIAMKCKGLPLAAKTLGSLLRGKDDPRDWEFV-LNTDIWDLQEHKCDIIPALG-VSY--HFLPPQLKQCFAYCSL 414 (1399)
Q Consensus 339 ~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~-l~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~k~~f~~~a~ 414 (1399)
. ..|++.|+|+|+++..++..+....+...|..- .+.... .+...+. +.+ ..+++..+..+..+|.
T Consensus 232 --~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 --Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK-------LILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp --H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred --H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH-------HHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 1 789999999999999998876433233333211 111000 0111111 111 1688899999999998
Q ss_pred cCCCcccChHHHHHHHH-HcCCccccCCcccHHHHHHHHHHHHHhcccccccCCCCCeEE-EcchhHHH
Q 036079 415 FPKDYEFHEEEIILLWI-AEGFLHQANSRRKLEDLGRDFVRELYSRSLFQQSSKDASLFV-MHDLINDL 481 (1399)
Q Consensus 415 fp~~~~i~~~~l~~~w~-~~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~-~H~lv~~~ 481 (1399)
+. +...+..... ..|. .........+++.|++.++|...+ ..|+ .|++++++
T Consensus 302 ---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLA 355 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHH
T ss_pred ---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHh
Confidence 22 4444433221 1121 001345678999999999998653 3466 47777765
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1.2e-13 Score=159.83 Aligned_cols=230 Identities=12% Similarity=0.110 Sum_probs=166.6
Q ss_pred ceeeecCCcCcccCCCCCC-CCcceEEecccCc--cc-ccCCCCCccceEEEeCCCCccc-cCCCCCCCccceeeccCCC
Q 036079 836 RTLSLVCCSKLQGTLPECL-PLLEVLDIQCCGQ--LL-VTIKYLPALSGLQINGCKGVVF-SSPIVPSSNQVVIFEKGLP 910 (1399)
Q Consensus 836 ~~L~L~~c~~l~~~~p~~l-~~L~~L~l~~~~~--~~-~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~~~~~ 910 (1399)
++++.++ ++++ .+|..+ +++++|++++|.. ++ ..+..+++|++|++++|.+... +...
T Consensus 12 ~~v~C~~-~~Lt-~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~--------------- 74 (350)
T 4ay9_X 12 RVFLCQE-SKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV--------------- 74 (350)
T ss_dssp TEEEEES-TTCC-SCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS---------------
T ss_pred CEEEecC-CCCC-ccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH---------------
Confidence 3455555 5677 677765 4788888888743 44 4678899999999999985432 2211
Q ss_pred CcceEEEeecccccccccccccccccCCcCcEEEeecCCCCCCCcc----ccccccEEEEeecCCCCccchhhccCCCcc
Q 036079 911 KLEKVGIVNVRELTYLWWSETRLLQDVRSLNRLQISRCPQLLSLPE----LQCRLRFLELSYCEGLTRLPQALLTLSSLT 986 (1399)
Q Consensus 911 ~L~~l~l~~~~~L~~L~l~~n~l~~~l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~ 986 (1399)
|.+++++..+.+.++..+..++. .+++|++|++++|.+....+..+....++.
T Consensus 75 -----------------------f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 131 (350)
T 4ay9_X 75 -----------------------FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131 (350)
T ss_dssp -----------------------BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCE
T ss_pred -----------------------hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhh
Confidence 33445555443333223444432 346788888888887666565666777888
Q ss_pred EEEEccCCCccccCC--ccC-CCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCC--CCCCCCCcEEE
Q 036079 987 EMRIAHCTSLISFPE--AAL-PSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE--VSLPSRLRTIE 1061 (1399)
Q Consensus 987 ~L~l~~~~~l~~~~~--~~~-~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~--~~~~~~L~~L~ 1061 (1399)
.|++.+++.+..++. +.. ...++.|++++|. ++.+|...+. ..+|+.|++++++.++.+|. +..+++|++|+
T Consensus 132 ~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~--~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFN--GTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSST--TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred hhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhcc--ccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 888888777777764 233 3468889999987 6777776655 67899999998888888886 45678999999
Q ss_pred ecCCCCCcccchhhhhcCCCCccEEeecCCCCccccccccccCccceeeecc
Q 036079 1062 IEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHIARIQLAPSLKRLIINS 1113 (1399)
Q Consensus 1062 l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~L~~L~l~~ 1113 (1399)
+++ +.++.+|.. .+.+|+.|.+.+|+.++.+|.+..+++|+.+++.+
T Consensus 209 Ls~-N~l~~lp~~----~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 209 ISR-TRIHSLPSY----GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CTT-SCCCCCCSS----SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred cCC-CCcCccChh----hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 999 578888874 47889999999999999999988999999999865
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=5.2e-14 Score=160.05 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=85.2
Q ss_pred CCCcccEEEecCCcccc-cCccc--cCccccceeeccCccccc-cc----hhhhccccccEEEcCCccccccchhhhccc
Q 036079 545 NLPRLRVFSLHGYCVSK-LPNEI--GNLKHLRFLNLSGTEIQI-LP----ESINSLYNLHTILLENCHRLKKLCKDMGNL 616 (1399)
Q Consensus 545 ~l~~Lr~L~L~~n~i~~-lp~~~--~~l~~L~~L~Ls~n~i~~-lp----~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 616 (1399)
.+++|++|++++|.+.. .|..+ ..+++|++|+|++|.++. .| ..+..+++|++|++++|......|..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 44669999999999885 47777 899999999999999984 23 345679999999999976655556779999
Q ss_pred CcccEEEcCCCccccc--CC--cccccccccCccceEEecc
Q 036079 617 IKLHHLRNSNVDSLEE--MP--KGFGKLTCLLTLCTFVVGK 653 (1399)
Q Consensus 617 ~~L~~L~l~~n~~~~~--lp--~~~~~L~~L~~L~l~~~~~ 653 (1399)
++|++|++++|.+... ++ ..++.+++|++|++.+|..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 9999999999984331 32 2347888899998866644
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=2e-15 Score=174.77 Aligned_cols=235 Identities=16% Similarity=0.170 Sum_probs=144.3
Q ss_pred cCCC--CcccEEEecCCcccccCccccCccccceeeccCccccc--cchhhhccccccEEEcCCccccccchhhhcccCc
Q 036079 543 LLNL--PRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQI--LPESINSLYNLHTILLENCHRLKKLCKDMGNLIK 618 (1399)
Q Consensus 543 ~~~l--~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 618 (1399)
+..+ +++++|++++|.+...+..+.++++|++|+|++|.+.. +|..+..+++|++|++++|......|..++.+++
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 4444 68899999999888776667788999999999998873 7888888999999999988665677888888999
Q ss_pred ccEEEcCCCcccc--cCCcccccccccCccceEEe-ccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCcc
Q 036079 619 LHHLRNSNVDSLE--EMPKGFGKLTCLLTLCTFVV-GKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKL 695 (1399)
Q Consensus 619 L~~L~l~~n~~~~--~lp~~~~~L~~L~~L~l~~~-~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~ 695 (1399)
|++|++++|..+. .+|..+..+++|++|++.++ .... .
T Consensus 144 L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-----------------------------~---------- 184 (336)
T 2ast_B 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE-----------------------------K---------- 184 (336)
T ss_dssp CSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH-----------------------------H----------
T ss_pred CCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh-----------------------------H----------
Confidence 9999999884243 25555666777777766443 2110 0
Q ss_pred CcCceEeeecCCCCchhHHHHHHhccCCCCC-CCceEEEeecC--CC--CCCcccCcCCCcceeEEEeeCCCC-C-CCCC
Q 036079 696 NLKALLLEWSTDISDAAEVETRVLDKLEPHQ-KLEKLTITGYG--GT--KFPNWLGESSFLKLLFLRFEGCGK-C-TSLP 768 (1399)
Q Consensus 696 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~~--~~p~~~~~~~~~~L~~L~l~~~~~-~-~~l~ 768 (1399)
.....+..++ +|++|++++|. ++ .+|..+ ..+++|+.|++++|.. . ..++
T Consensus 185 ---------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 185 ---------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV--RRCPNLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp ---------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--HHCTTCSEEECTTCTTCCGGGGG
T ss_pred ---------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH--hhCCCCCEEeCCCCCcCCHHHHH
Confidence 0111122234 56666666652 21 233333 2356677777777663 2 2233
Q ss_pred CCCCCCccceeeecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCC-CccceeeecCCcCcc
Q 036079 769 SVGQLPLLKHLEISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGF-PKLRTLSLVCCSKLQ 847 (1399)
Q Consensus 769 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~-~~L~~L~L~~c~~l~ 847 (1399)
.+..+++|++|++++|..+......... .+++|+.|++.++ +... .+..+ .++..|++++ +.++
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~--i~~~-------~~~~l~~~l~~L~l~~-n~l~ 306 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLELG-----EIPTLKTLQVFGI--VPDG-------TLQLLKEALPHLQINC-SHFT 306 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGGG-----GCTTCCEEECTTS--SCTT-------CHHHHHHHSTTSEESC-CCSC
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHHHh-----cCCCCCEEeccCc--cCHH-------HHHHHHhhCcceEEec-ccCc
Confidence 5667777888888777522221111111 2677777777765 1111 01112 2355566655 5777
Q ss_pred cCCCCCC
Q 036079 848 GTLPECL 854 (1399)
Q Consensus 848 ~~~p~~l 854 (1399)
+..|..+
T Consensus 307 ~~~~~~~ 313 (336)
T 2ast_B 307 TIARPTI 313 (336)
T ss_dssp CTTCSSC
T ss_pred cccCCcc
Confidence 6666543
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=4.6e-14 Score=159.88 Aligned_cols=172 Identities=17% Similarity=0.169 Sum_probs=137.1
Q ss_pred hcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccE
Q 036079 542 MLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHH 621 (1399)
Q Consensus 542 ~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 621 (1399)
.+..+++|++|++++|.+..+|. +.++++|++|+|++|.++.+| .+..+++|++|++++| .+..+|. +..+++|++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQV 133 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCE
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCE
Confidence 57889999999999999999977 999999999999999999986 6999999999999996 4666765 999999999
Q ss_pred EEcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceE
Q 036079 622 LRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALL 701 (1399)
Q Consensus 622 L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 701 (1399)
|++++|. +..+|. ++.+++|++|++.+|.....
T Consensus 134 L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~--------------------------------------------- 166 (308)
T 1h6u_A 134 LYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDL--------------------------------------------- 166 (308)
T ss_dssp EECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCC---------------------------------------------
T ss_pred EECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCC---------------------------------------------
Confidence 9999998 666665 78888888887755433210
Q ss_pred eeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCCCCccceeee
Q 036079 702 LEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQLPLLKHLEI 781 (1399)
Q Consensus 702 l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L 781 (1399)
..+..+++|+.|++++|.+..++. + ..+++|+.|++++|.+.... .+..+++|+.|++
T Consensus 167 ------------------~~l~~l~~L~~L~l~~n~l~~~~~-l--~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l 224 (308)
T 1h6u_A 167 ------------------TPLANLSKLTTLKADDNKISDISP-L--ASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTL 224 (308)
T ss_dssp ------------------GGGTTCTTCCEEECCSSCCCCCGG-G--GGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEE
T ss_pred ------------------hhhcCCCCCCEEECCCCccCcChh-h--cCCCCCCEEEccCCccCccc-cccCCCCCCEEEc
Confidence 013445677788888888877765 2 35778888888888765433 5778888888888
Q ss_pred ccccc
Q 036079 782 SRMDR 786 (1399)
Q Consensus 782 s~~~~ 786 (1399)
++|..
T Consensus 225 ~~N~i 229 (308)
T 1h6u_A 225 TNQTI 229 (308)
T ss_dssp EEEEE
T ss_pred cCCee
Confidence 88754
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=4.9e-14 Score=156.76 Aligned_cols=182 Identities=21% Similarity=0.233 Sum_probs=132.0
Q ss_pred hhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchh-hhccccccEEEcCCccccccchhhhcccCcc
Q 036079 541 QMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPES-INSLYNLHTILLENCHRLKKLCKDMGNLIKL 619 (1399)
Q Consensus 541 ~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 619 (1399)
+.+..+++|++|++++|.+..++ .+.++++|++|+|++|.++.+|.. +..+++|++|++++|......|..++.+++|
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence 34778999999999999999875 789999999999999999988654 7999999999999975444444458999999
Q ss_pred cEEEcCCCcccccCCcc-cccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcC
Q 036079 620 HHLRNSNVDSLEEMPKG-FGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLK 698 (1399)
Q Consensus 620 ~~L~l~~n~~~~~lp~~-~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~ 698 (1399)
++|++++|. +..+|.. ++.+++|++|++.+|.+...
T Consensus 136 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------------------------ 172 (272)
T 3rfs_A 136 TYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSL------------------------------------------ 172 (272)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC------------------------------------------
T ss_pred CEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCcc------------------------------------------
Confidence 999999998 6666644 67888888887755533210
Q ss_pred ceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCCCCccce
Q 036079 699 ALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQLPLLKH 778 (1399)
Q Consensus 699 ~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~ 778 (1399)
....+..+++|+.|++++|.+..+|.... ..+++|+.|++++|... +.+++|+.
T Consensus 173 -------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~~------~~~~~l~~ 226 (272)
T 3rfs_A 173 -------------------PEGVFDKLTQLKDLRLYQNQLKSVPDGVF-DRLTSLQYIWLHDNPWD------CTCPGIRY 226 (272)
T ss_dssp -------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCBC------CCTTTTHH
T ss_pred -------------------CHHHhcCCccCCEEECCCCcCCccCHHHH-hCCcCCCEEEccCCCcc------ccCcHHHH
Confidence 01123445667777777777776665432 34667777777776432 34556777
Q ss_pred eeecccccceecCc
Q 036079 779 LEISRMDRVKSVGP 792 (1399)
Q Consensus 779 L~Ls~~~~~~~~~~ 792 (1399)
|+++.|...+.++.
T Consensus 227 l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 227 LSEWINKHSGVVRN 240 (272)
T ss_dssp HHHHHHHTGGGBBC
T ss_pred HHHHHHhCCCcccC
Confidence 77776665555543
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.47 E-value=2.1e-13 Score=149.67 Aligned_cols=175 Identities=17% Similarity=0.112 Sum_probs=114.5
Q ss_pred CcccEEEecCCcccccCccccCccccceeeccCccccccc-hhhhccccccEEEcCCccccccchhhhcccCcccEEEcC
Q 036079 547 PRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILP-ESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNS 625 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 625 (1399)
...+.++++++.++.+|..+. ++|++|+|++|.++.++ ..|.++++|++|+|++|......|..|..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356778888888888877665 57888888888887664 457788888888888865444444557788888888888
Q ss_pred CCcccccCC-cccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEeee
Q 036079 626 NVDSLEEMP-KGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLEW 704 (1399)
Q Consensus 626 ~n~~~~~lp-~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 704 (1399)
+|. +..+| ..|+.+++|++|++.+|.+...
T Consensus 92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------------------------------------ 122 (251)
T 3m19_A 92 NNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSL------------------------------------------------ 122 (251)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC------------------------------------------------
T ss_pred CCc-ccccChhHhcccCCCCEEEcCCCcCCCc------------------------------------------------
Confidence 887 44554 3466677777766644432210
Q ss_pred cCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceeeecc
Q 036079 705 STDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLEISR 783 (1399)
Q Consensus 705 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~Ls~ 783 (1399)
....+..+++|+.|++++|.+..+|...+ ..+++|+.|++++|.+....+ .+..+++|+.|++++
T Consensus 123 -------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 123 -------------PSGVFDRLTKLKELRLNTNQLQSIPAGAF-DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp -------------CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred -------------ChhHhccCCcccEEECcCCcCCccCHHHc-CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 00123345566777777777776665322 346677777777776655554 466777777777777
Q ss_pred ccc
Q 036079 784 MDR 786 (1399)
Q Consensus 784 ~~~ 786 (1399)
|..
T Consensus 189 N~~ 191 (251)
T 3m19_A 189 NQF 191 (251)
T ss_dssp CCB
T ss_pred Cce
Confidence 643
No 97
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.46 E-value=2.8e-13 Score=124.62 Aligned_cols=78 Identities=23% Similarity=0.380 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc--ccCChHHHHHHHHHHHHhhchHhHHHHHHHH
Q 036079 10 TASFELLIKKLASLELFTQHEKLKADFMRWKDKMEMIQAVLADAEDR--QTKDKSVKKWLDKLQNLAYDVEDILDEFETE 87 (1399)
Q Consensus 10 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~~~~~--~~~~~~~~~w~~~lr~~~~d~ed~ld~~~~~ 87 (1399)
+++++++...+..+ +....++++++++|+++|++|++||.+|+.+ +..++.++.|+++||+++||+||++|+|.++
T Consensus 4 ~~ll~KL~~ll~~E--~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 4 SNLIPKLGELLTEE--FKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp CSHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 8888999999999999999999999999987 5578999999999999999999999999988
Q ss_pred HH
Q 036079 88 AL 89 (1399)
Q Consensus 88 ~~ 89 (1399)
..
T Consensus 82 ~~ 83 (115)
T 3qfl_A 82 VD 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 98
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.45 E-value=2.1e-12 Score=152.70 Aligned_cols=296 Identities=16% Similarity=0.087 Sum_probs=182.2
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh----ccCCceEEEEeCCCCCHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFEIKAWTCVSEEFDVFRI 223 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~ 223 (1399)
+..|+||+.+++++.+++...- .....+.+.|+|++|+||||+|+.+++..... +.-...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 3679999999999999986431 12345689999999999999999999743111 00124678888888888999
Q ss_pred HHHHHHhccCCCCCCcccHHHHHHHHHHHhc--CCeEEEEEcccCccChh--hHhhh---cccCCCC--CCCcEEEEecC
Q 036079 224 SKSILNSVASDQCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNESYN--YWSIL---SCPFEAV--APGSKIVVTTR 294 (1399)
Q Consensus 224 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~k~~LiVlDdv~~~~~~--~~~~l---~~~~~~~--~~~s~iivTtr 294 (1399)
+..++.+++...........+....+.+.+. +++.+||+||++..... ..+.+ ....... ..+..+|+||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 9999999976544344445666666666663 56899999999764322 22222 2211111 34567888887
Q ss_pred Chhh--------hhccCCCCceecCCCChhhHHHHHHHhhcCC-CCCCCChhhHHHHHHHHHHcC---CChH-HHHHHHh
Q 036079 295 NLGV--------TVNMGADPAYQLKELSNDDCLCVLTQISLGA-RDFSMHQSLKEVGEKIAMKCK---GLPL-AAKTLGS 361 (1399)
Q Consensus 295 ~~~~--------~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~ 361 (1399)
.... ...+. ...+.+.+++.++..+++...+... ...... +++.+.+++.++ |.|- |+..+..
T Consensus 176 ~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp CSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 6532 12121 1368999999999999998875310 111111 345677788887 9994 3333322
Q ss_pred hhc-----CCC--ChhHHHHHHhhhhcccccccCCchhhhhccccCCchhhhhhhhhcc-ccCCCcccChHHHHHHHH--
Q 036079 362 LLR-----GKD--DPRDWEFVLNTDIWDLQEHKCDIIPALGVSYHFLPPQLKQCFAYCS-LFPKDYEFHEEEIILLWI-- 431 (1399)
Q Consensus 362 ~l~-----~~~--~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~a-~fp~~~~i~~~~l~~~w~-- 431 (1399)
+.. +.. +.+++..++.... ...+.-++..++++.+..+..++ ++.....+....+.+...
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 211 111 4556665554421 12345567889988888777666 443223444454433321
Q ss_pred --HcCCccccCCcccHHHHHHHHHHHHHhccccccc
Q 036079 432 --AEGFLHQANSRRKLEDLGRDFVRELYSRSLFQQS 465 (1399)
Q Consensus 432 --~~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 465 (1399)
..| .. ......+..++++|...++++..
T Consensus 322 ~~~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLG-LE-----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTT-CC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcC-CC-----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 122 11 11245678899999999999874
No 99
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=2.6e-12 Score=151.45 Aligned_cols=293 Identities=14% Similarity=0.021 Sum_probs=179.8
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh----cc--CCceEEEEeCCCC-CH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RH--FEIKAWTCVSEEF-DV 220 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~~--f~~~~wv~~~~~~-~~ 220 (1399)
+..|+||+++++++.+++.... .+...+.+.|+|++|+||||+|+.+++..... .. ....+|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 3679999999999998886532 22345689999999999999999999742211 11 2346788887777 88
Q ss_pred HHHHHHHHHhccCCC-CCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhh-Hhh-hcccCCCCCCCcEEEEecCChh
Q 036079 221 FRISKSILNSVASDQ-CTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNY-WSI-LSCPFEAVAPGSKIVVTTRNLG 297 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~-~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~-~~~-l~~~~~~~~~~s~iivTtr~~~ 297 (1399)
..++.+++.++.+.. .............+.+.++.++.+|||||++...... .+. +...+... .+..||+||+...
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCc
Confidence 888899888884322 2123334556677777777766699999997643221 111 11111111 6778999998753
Q ss_pred h--------hhccCCCCceecCCCChhhHHHHHHHhhcCC-CCCCCChhhHHHHHHHHHHcC---CChH-HHHHHHhhh-
Q 036079 298 V--------TVNMGADPAYQLKELSNDDCLCVLTQISLGA-RDFSMHQSLKEVGEKIAMKCK---GLPL-AAKTLGSLL- 363 (1399)
Q Consensus 298 ~--------~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~l- 363 (1399)
. ...++ ..+.+.+++.++..+++...+... .....+ +++.+.|++.++ |.|. |+..+..+.
T Consensus 176 ~~~~l~~~l~sr~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 176 VRDYMEPRVLSSLG--PSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTTTSCHHHHHTCC--CEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCC--CeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 2 11112 279999999999999999875311 111112 345677778887 9887 444333222
Q ss_pred -c-C--CCChhHHHHHHhhhhcccccccCCchhhhhccccCCchhhhhhhhhccccCCCcccChHHHHHHHHHcCCcccc
Q 036079 364 -R-G--KDDPRDWEFVLNTDIWDLQEHKCDIIPALGVSYHFLPPQLKQCFAYCSLFPKDYEFHEEEIILLWIAEGFLHQA 439 (1399)
Q Consensus 364 -~-~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~l~~~w~~~g~i~~~ 439 (1399)
. + .-+.+++..+++... ...+..+++.|+++.+..+..++....+-.+. +......-..| +.
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~-- 316 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK-- 316 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC--
T ss_pred HhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC--
Confidence 2 1 124566666655432 12456667889988888777776611101110 11111111222 11
Q ss_pred CCcccHHHHHHHHHHHHHhccccccc
Q 036079 440 NSRRKLEDLGRDFVRELYSRSLFQQS 465 (1399)
Q Consensus 440 ~~~~~~~~~~~~~~~~L~~~~l~~~~ 465 (1399)
........+++..|.+.++++..
T Consensus 317 ---~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 ---PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---CCCHHHHHHHHHHHHhCCCEEEE
Confidence 11235677889999999999764
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=1.5e-13 Score=153.97 Aligned_cols=170 Identities=19% Similarity=0.206 Sum_probs=125.3
Q ss_pred CCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEE
Q 036079 544 LNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLR 623 (1399)
Q Consensus 544 ~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 623 (1399)
..+++|+.|++++|.+..+|. +..+++|++|+|++|.++.+|. +..+++|++|++++| .+..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 356788999999999988864 8889999999999999998877 889999999999985 4666654 88999999999
Q ss_pred cCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEee
Q 036079 624 NSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLE 703 (1399)
Q Consensus 624 l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 703 (1399)
+++|. +..+ ..+..+++|++|++.+|.+...
T Consensus 119 L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~~~----------------------------------------------- 149 (291)
T 1h6t_A 119 LEHNG-ISDI-NGLVHLPQLESLYLGNNKITDI----------------------------------------------- 149 (291)
T ss_dssp CTTSC-CCCC-GGGGGCTTCCEEECCSSCCCCC-----------------------------------------------
T ss_pred CCCCc-CCCC-hhhcCCCCCCEEEccCCcCCcc-----------------------------------------------
Confidence 99987 5555 3577777777777755433211
Q ss_pred ecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCCCCccceeeecc
Q 036079 704 WSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQLPLLKHLEISR 783 (1399)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~Ls~ 783 (1399)
..+..+++|+.|++++|.+..++. + ..+++|+.|++++|.+. .++.+..+++|+.|++++
T Consensus 150 ----------------~~l~~l~~L~~L~L~~N~l~~~~~-l--~~l~~L~~L~L~~N~i~-~l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 150 ----------------TVLSRLTKLDTLSLEDNQISDIVP-L--AGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFS 209 (291)
T ss_dssp ----------------GGGGGCTTCSEEECCSSCCCCCGG-G--TTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEE
T ss_pred ----------------hhhccCCCCCEEEccCCccccchh-h--cCCCccCEEECCCCcCC-CChhhccCCCCCEEECcC
Confidence 112334566777777777776655 3 35677888888877653 345677788888888887
Q ss_pred ccc
Q 036079 784 MDR 786 (1399)
Q Consensus 784 ~~~ 786 (1399)
|..
T Consensus 210 n~i 212 (291)
T 1h6t_A 210 QEC 212 (291)
T ss_dssp EEE
T ss_pred Ccc
Confidence 753
No 101
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=6.3e-12 Score=148.58 Aligned_cols=299 Identities=13% Similarity=0.031 Sum_probs=186.7
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhcc-CCceEEEEeCCCCCHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH-FEIKAWTCVSEEFDVFRISKS 226 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 226 (1399)
+..++||+.+++++.+++........+..+.+.|+|++|+||||+|+.++.. .... -..++|+++....+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 3679999999999999986531101122348999999999999999999873 2222 124678888788888899999
Q ss_pred HHHhccCCCCCCcccHHHHHHHHHHHhc--CCeEEEEEcccCccChhhHhhhcccCCCCC----CCcEEEEecCChhhhh
Q 036079 227 ILNSVASDQCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNESYNYWSILSCPFEAVA----PGSKIVVTTRNLGVTV 300 (1399)
Q Consensus 227 il~~l~~~~~~~~~~~~~~~~~l~~~l~--~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~----~~s~iivTtr~~~~~~ 300 (1399)
++..++...........++.+.+.+.+. +++.+||+|+++..+......+...+.... .+..||+||+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 9998876433233345556666665554 678999999998876555566555443211 4667888887664433
Q ss_pred ccC-------CCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHc---------CCChHHHHHHHhhhc
Q 036079 301 NMG-------ADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKC---------KGLPLAAKTLGSLLR 364 (1399)
Q Consensus 301 ~~~-------~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~l~ 364 (1399)
.+. ....+.+.+++.++..+++...+..... ...-.++..+.|++.+ +|.|..+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 221 1135899999999999999887532100 0112256778889988 788755444432211
Q ss_pred ------CCC--ChhHHHHHHhhhhcccccccCCchhhhhccccCCchhhhhhhhhccccC---CCcccChHHHHHHHHH-
Q 036079 365 ------GKD--DPRDWEFVLNTDIWDLQEHKCDIIPALGVSYHFLPPQLKQCFAYCSLFP---KDYEFHEEEIILLWIA- 432 (1399)
Q Consensus 365 ------~~~--~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp---~~~~i~~~~l~~~w~~- 432 (1399)
+.. +.++...+..... ...+.-.+..|+++.+.++..++.+. .+..+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 111 2223333222211 11233345678888888887777654 2224555666554433
Q ss_pred ---cCCccccCCcccHHHHHHHHHHHHHhcccccccC
Q 036079 433 ---EGFLHQANSRRKLEDLGRDFVRELYSRSLFQQSS 466 (1399)
Q Consensus 433 ---~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~ 466 (1399)
.|... .......+++++|.+.++|....
T Consensus 322 ~~~~~~~~------~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 322 CEEYGERP------RVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHTTCCC------CCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHcCCCC------CCHHHHHHHHHHHHhCCCeEEee
Confidence 12111 11345678999999999998743
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=1.7e-14 Score=169.99 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=18.2
Q ss_pred cCccccceeeccCccccc-----cchhhhccccccEEEcCCc
Q 036079 567 GNLKHLRFLNLSGTEIQI-----LPESINSLYNLHTILLENC 603 (1399)
Q Consensus 567 ~~l~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~ 603 (1399)
..+++|++|+|++|.|.. +|..+..+++|++|+|++|
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 344555555555555443 4444455555555555554
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=1e-13 Score=160.22 Aligned_cols=124 Identities=20% Similarity=0.233 Sum_probs=60.1
Q ss_pred ccEEEEeecCCCCccchhhccC--CCccEEEEccCCCccccCCccCCCcccEEEccCCCcccc-CccccccCccCCcceE
Q 036079 961 LRFLELSYCEGLTRLPQALLTL--SSLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCNALKS-LPEAWMHNSYSSLQSL 1037 (1399)
Q Consensus 961 L~~L~ls~n~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~~l~~-~~~~~~~~~l~~L~~L 1037 (1399)
++.++++++.+. +..+..+ ++++.|++++|......+....+++|++|++++|..... ++..+.. +++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~--~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ--CSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTT--BCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhh--CCCCCEE
Confidence 445555554432 3344444 666666666654433334444566667777766652222 3333322 5666666
Q ss_pred EecCCCCccccC-CCCCCCCCcEEEecCCCCCcc--cchhhhhcCCCCccEEeecCC
Q 036079 1038 KIRYCKSLVSFP-EVSLPSRLRTIEIEGCYALKC--LPEAWMENSSTSLESLNIYNC 1091 (1399)
Q Consensus 1038 ~ls~~~~l~~~~-~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~L~~c 1091 (1399)
++++|......+ .+..+++|++|++++|..++. ++..+ ..+++|++|++++|
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~--~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL--SSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH--HHCTTCCEEECCCC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH--hcCCCCCEEcCCCC
Confidence 666654221211 123345555555555444443 22211 33555555555555
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.42 E-value=8.4e-15 Score=172.74 Aligned_cols=91 Identities=23% Similarity=0.249 Sum_probs=72.1
Q ss_pred HhhhcCCCCcccEEEecCCcccc-----cCccccCccccceeeccCcccc----ccchhh-------hccccccEEEcCC
Q 036079 539 VLQMLLNLPRLRVFSLHGYCVSK-----LPNEIGNLKHLRFLNLSGTEIQ----ILPESI-------NSLYNLHTILLEN 602 (1399)
Q Consensus 539 ~~~~~~~l~~Lr~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~i~----~lp~~i-------~~L~~L~~L~L~~ 602 (1399)
++..+..+++|++|+|++|.+.. ++..|..+++|++|+|++|.+. .+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44457778899999999998874 3456788999999999997555 345444 6889999999999
Q ss_pred ccccc----cchhhhcccCcccEEEcCCCcc
Q 036079 603 CHRLK----KLCKDMGNLIKLHHLRNSNVDS 629 (1399)
Q Consensus 603 ~~~l~----~lp~~i~~L~~L~~L~l~~n~~ 629 (1399)
|.... .+|..+..+++|++|++++|.+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 75444 4788899999999999999983
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=1e-13 Score=161.55 Aligned_cols=123 Identities=12% Similarity=0.070 Sum_probs=92.4
Q ss_pred CCCcchhhHHhhhcCCCCcccEEEecCCcccccC-----ccccCcc-ccceeeccCcccccc-chhhhcc-----ccccE
Q 036079 530 YEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKLP-----NEIGNLK-HLRFLNLSGTEIQIL-PESINSL-----YNLHT 597 (1399)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~lp-----~~~~~l~-~L~~L~Ls~n~i~~l-p~~i~~L-----~~L~~ 597 (1399)
++.+.+++.+|..+...++|++|+|++|.++..+ ..|.+++ +|++|+|++|.|... +..+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 4456677778877777788999999999999875 6788888 899999999999955 6667765 99999
Q ss_pred EEcCCccccccchhhhcc----c-CcccEEEcCCCcccccCC-ccc----cc-ccccCccceEEecc
Q 036079 598 ILLENCHRLKKLCKDMGN----L-IKLHHLRNSNVDSLEEMP-KGF----GK-LTCLLTLCTFVVGK 653 (1399)
Q Consensus 598 L~L~~~~~l~~lp~~i~~----L-~~L~~L~l~~n~~~~~lp-~~~----~~-L~~L~~L~l~~~~~ 653 (1399)
|+|++|......+..+.. + ++|++|++++|. +...+ ..+ .. .++|++|++.+|.+
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 999997655555554444 4 899999999998 45444 222 23 25777777755543
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=1.7e-12 Score=147.54 Aligned_cols=173 Identities=11% Similarity=0.128 Sum_probs=128.3
Q ss_pred ccCCcCcEEEeecCCCCCCCcc-------ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccc--cC---Cc
Q 036079 935 QDVRSLNRLQISRCPQLLSLPE-------LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLIS--FP---EA 1002 (1399)
Q Consensus 935 ~~l~~L~~L~l~~~~~~~~~~~-------~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~---~~ 1002 (1399)
..+++|+.|++++|......+. .+++|++|++++|.+.+..+..+..+++|++|++++|..... ++ ..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 4567778888888876554432 257899999999998777888899999999999999865432 21 13
Q ss_pred cCCCcccEEEccCCCccccCccc---cccCccCCcceEEecCCCCccccCC-CCC---CCCCcEEEecCCCCCcccchhh
Q 036079 1003 ALPSRLRTIDIEGCNALKSLPEA---WMHNSYSSLQSLKIRYCKSLVSFPE-VSL---PSRLRTIEIEGCYALKCLPEAW 1075 (1399)
Q Consensus 1003 ~~~~~L~~L~Ls~~~~l~~~~~~---~~~~~l~~L~~L~ls~~~~l~~~~~-~~~---~~~L~~L~l~~c~~l~~~~~~~ 1075 (1399)
..+++|++|++++|. ++.++.. ++ ..+++|++|++++|......|. +.. +++|++|++++ +.++.+|...
T Consensus 194 ~~l~~L~~L~Ls~N~-l~~l~~~~~~l~-~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~ 270 (310)
T 4glp_A 194 HKFPAIQNLALRNTG-METPTGVCAALA-AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGL 270 (310)
T ss_dssp TSSCCCCSCBCCSSC-CCCHHHHHHHHH-HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCC
T ss_pred hcCCCCCEEECCCCC-CCchHHHHHHHH-hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhh
Confidence 567899999999997 5555542 21 1378999999999875444342 222 37999999999 5777888754
Q ss_pred hhcCCCCccEEeecCCCCccccccccccCccceeeecccc
Q 036079 1076 MENSSTSLESLNIYNCNSLTHIARIQLAPSLKRLIINSCH 1115 (1399)
Q Consensus 1076 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~L~~L~l~~c~ 1115 (1399)
.++|++|++++| .++.++.+..+++|++|++++++
T Consensus 271 ----~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 271 ----PAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ----CSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred ----cCCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 479999999986 55666667888999999998864
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=2.1e-12 Score=141.59 Aligned_cols=153 Identities=20% Similarity=0.158 Sum_probs=115.8
Q ss_pred cccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcCCCcccccCC-cccccccccCccce
Q 036079 570 KHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNVDSLEEMP-KGFGKLTCLLTLCT 648 (1399)
Q Consensus 570 ~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~lp-~~~~~L~~L~~L~l 648 (1399)
...++++++++.++.+|..+. .+|++|++++|......|..|.++++|++|++++|. +..++ ..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEEC
Confidence 467899999999999998776 689999999976555556679999999999999998 44444 45888888888877
Q ss_pred EEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCC
Q 036079 649 FVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKL 728 (1399)
Q Consensus 649 ~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L 728 (1399)
.+|.+.. + ....+..+++|
T Consensus 91 ~~n~l~~------------~-------------------------------------------------~~~~~~~l~~L 109 (251)
T 3m19_A 91 ANNQLAS------------L-------------------------------------------------PLGVFDHLTQL 109 (251)
T ss_dssp TTSCCCC------------C-------------------------------------------------CTTTTTTCTTC
T ss_pred CCCcccc------------c-------------------------------------------------ChhHhcccCCC
Confidence 5543321 0 11234456788
Q ss_pred ceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceeeecccccc
Q 036079 729 EKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLEISRMDRV 787 (1399)
Q Consensus 729 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~Ls~~~~~ 787 (1399)
+.|++++|.+..+|...+ ..+++|+.|++++|.+....+ .++.+++|++|++++|...
T Consensus 110 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVF-DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CEEEcCCCcCCCcChhHh-ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 888888888888876543 357888888888887766555 5788888888888887544
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=3.5e-13 Score=141.53 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=72.4
Q ss_pred CCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEc
Q 036079 545 NLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRN 624 (1399)
Q Consensus 545 ~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 624 (1399)
.+++|+.|++++|.+..+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++.+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4557788888888888777 6778888888888888776654 6777888888888876555556677777888888888
Q ss_pred CCCcccccCCcccccccccCccceE
Q 036079 625 SNVDSLEEMPKGFGKLTCLLTLCTF 649 (1399)
Q Consensus 625 ~~n~~~~~lp~~~~~L~~L~~L~l~ 649 (1399)
++|.+....|..++.+++|++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEcc
Confidence 8777433445555555555555443
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=1.8e-12 Score=157.24 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=68.3
Q ss_pred cccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcCCC
Q 036079 548 RLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNV 627 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n 627 (1399)
+|++|+|++|.++.+|..+. ++|++|+|++|.|+.+| ..+++|++|++++| .+..+|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 78888888888888877663 67888888888888888 45788888888885 4555777 655 8888888888
Q ss_pred cccccCCcccccccccCccceEEec
Q 036079 628 DSLEEMPKGFGKLTCLLTLCTFVVG 652 (1399)
Q Consensus 628 ~~~~~lp~~~~~L~~L~~L~l~~~~ 652 (1399)
. +..+|. .+++|+.|++.+|.
T Consensus 131 ~-l~~lp~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYINADNNQ 151 (571)
T ss_dssp C-CSCCCC---CCTTCCEEECCSSC
T ss_pred c-CCCCCC---cCccccEEeCCCCc
Confidence 7 555776 56667777665443
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=5.8e-13 Score=161.58 Aligned_cols=177 Identities=18% Similarity=0.181 Sum_probs=133.8
Q ss_pred CCCcchhhHHhhhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccc
Q 036079 530 YEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKL 609 (1399)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 609 (1399)
+++|.+.+ +|..+ +++|++|+|++|.++.+| ..+++|++|+|++|.|+.+|. +.+ +|++|++++| .+..+
T Consensus 66 Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~l~~l 135 (571)
T 3cvr_A 66 LNRLNLSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-QLTML 135 (571)
T ss_dssp CCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-CCSCC
T ss_pred eCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-cCCCC
Confidence 34455544 55544 378999999999999999 457999999999999999998 766 9999999996 56668
Q ss_pred hhhhcccCcccEEEcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhh
Q 036079 610 CKDMGNLIKLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREA 689 (1399)
Q Consensus 610 p~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~ 689 (1399)
|. .+++|++|++++|. +..+|. .+++|++|++.+|.+.. +
T Consensus 136 p~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~------------l--------------------- 175 (571)
T 3cvr_A 136 PE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTF------------L--------------------- 175 (571)
T ss_dssp CC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSC------------C---------------------
T ss_pred CC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCC------------c---------------------
Confidence 87 78999999999998 667886 56788888776554321 0
Q ss_pred hccCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcce-------eEEEeeCCC
Q 036079 690 QLNGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKL-------LFLRFEGCG 762 (1399)
Q Consensus 690 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L-------~~L~l~~~~ 762 (1399)
+. +. ++|+.|++++|.++.+|. +.. +| +.|++++|.
T Consensus 176 -----------------------------p~-l~--~~L~~L~Ls~N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 176 -----------------------------PE-LP--ESLEALDVSTNLLESLPA-VPV----RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp -----------------------------CC-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSC
T ss_pred -----------------------------ch-hh--CCCCEEECcCCCCCchhh-HHH----hhhcccccceEEecCCCc
Confidence 01 11 578888888898888887 432 56 899999987
Q ss_pred CCCCCCCCCCCCccceeeecccccceecCcc
Q 036079 763 KCTSLPSVGQLPLLKHLEISRMDRVKSVGPE 793 (1399)
Q Consensus 763 ~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~~~ 793 (1399)
+....+.+..+++|+.|+|++|...+.++..
T Consensus 219 l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 219 ITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred ceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 7654446777899999999988766655443
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.37 E-value=4.2e-14 Score=164.73 Aligned_cols=102 Identities=10% Similarity=-0.052 Sum_probs=75.9
Q ss_pred EEEecCCccccc-CccccCccccceeeccCccccccc-----hhhhccc-cccEEEcCCccccccchhhhccc-----Cc
Q 036079 551 VFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQILP-----ESINSLY-NLHTILLENCHRLKKLCKDMGNL-----IK 618 (1399)
Q Consensus 551 ~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-----~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~L-----~~ 618 (1399)
++++++|.++.. |..+...++|++|+|++|.|+..+ ..+..++ +|++|+|++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 467889999865 665666666999999999999776 6788888 89999999986555557777776 99
Q ss_pred ccEEEcCCCcccccCCcc----cccc-cccCccceEEec
Q 036079 619 LHHLRNSNVDSLEEMPKG----FGKL-TCLLTLCTFVVG 652 (1399)
Q Consensus 619 L~~L~l~~n~~~~~lp~~----~~~L-~~L~~L~l~~~~ 652 (1399)
|++|++++|.+....+.. +..+ ++|++|++.+|.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 999999999833333333 3333 667777665544
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.37 E-value=6.5e-13 Score=163.38 Aligned_cols=172 Identities=19% Similarity=0.201 Sum_probs=120.6
Q ss_pred cCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEE
Q 036079 543 LLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHL 622 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 622 (1399)
+..+++|+.|++++|.+..+| .|..+++|++|+|++|.|..+|. +..+++|++|+|++| .+..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 345667888888888888776 47888888888888888887776 888888888888885 455555 67888888888
Q ss_pred EcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEe
Q 036079 623 RNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLL 702 (1399)
Q Consensus 623 ~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 702 (1399)
++++|. +..+| .+..+++|+.|++.+|.+...
T Consensus 115 ~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l---------------------------------------------- 146 (605)
T 1m9s_A 115 SLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI---------------------------------------------- 146 (605)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC----------------------------------------------
T ss_pred EecCCC-CCCCc-cccCCCccCEEECCCCccCCc----------------------------------------------
Confidence 888887 55543 467777777776654432210
Q ss_pred eecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCCCCccceeeec
Q 036079 703 EWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQLPLLKHLEIS 782 (1399)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~Ls 782 (1399)
..+..+++|+.|+|++|.+..++. + ..+++|+.|+|++|.+.. ++.+..+++|+.|+|+
T Consensus 147 -----------------~~l~~l~~L~~L~Ls~N~l~~~~~-l--~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 147 -----------------TVLSRLTKLDTLSLEDNQISDIVP-L--AGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELF 205 (605)
T ss_dssp -----------------GGGGSCTTCSEEECCSSCCCCCGG-G--TTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECC
T ss_pred -----------------hhhcccCCCCEEECcCCcCCCchh-h--ccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEcc
Confidence 123345567777777777776655 3 356778888888776543 4667778888888888
Q ss_pred ccccc
Q 036079 783 RMDRV 787 (1399)
Q Consensus 783 ~~~~~ 787 (1399)
+|...
T Consensus 206 ~N~l~ 210 (605)
T 1m9s_A 206 SQECL 210 (605)
T ss_dssp SEEEE
T ss_pred CCcCc
Confidence 77543
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=3.4e-13 Score=148.54 Aligned_cols=167 Identities=20% Similarity=0.196 Sum_probs=100.1
Q ss_pred CCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcC
Q 036079 546 LPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNS 625 (1399)
Q Consensus 546 l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 625 (1399)
+.++..++++++.++.++ .+..+++|++|++++|.|+.+| .+..+++|++|++++| .+..+|. +..+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 344555566666666665 4666666677777766666666 5666666777777664 3455554 6666667777776
Q ss_pred CCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEeeec
Q 036079 626 NVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLEWS 705 (1399)
Q Consensus 626 ~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 705 (1399)
+|. +..+|.... ++|++|++.+|.+..
T Consensus 94 ~N~-l~~l~~~~~--~~L~~L~L~~N~l~~-------------------------------------------------- 120 (263)
T 1xeu_A 94 RNR-LKNLNGIPS--ACLSRLFLDNNELRD-------------------------------------------------- 120 (263)
T ss_dssp SSC-CSCCTTCCC--SSCCEEECCSSCCSB--------------------------------------------------
T ss_pred CCc-cCCcCcccc--CcccEEEccCCccCC--------------------------------------------------
Confidence 666 444543222 455555443332211
Q ss_pred CCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCCCCccceeeecccc
Q 036079 706 TDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQLPLLKHLEISRMD 785 (1399)
Q Consensus 706 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~Ls~~~ 785 (1399)
++.+..+++|+.|++++|.++.+| .+ ..+++|+.|++++|.+... +.+..+++|+.|++++|.
T Consensus 121 -------------~~~l~~l~~L~~L~Ls~N~i~~~~-~l--~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 121 -------------TDSLIHLKNLEILSIRNNKLKSIV-ML--GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp -------------SGGGTTCTTCCEEECTTSCCCBCG-GG--GGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred -------------ChhhcCcccccEEECCCCcCCCCh-HH--ccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 011333455666666666666665 22 3466777777777766444 667778888888888775
Q ss_pred c
Q 036079 786 R 786 (1399)
Q Consensus 786 ~ 786 (1399)
.
T Consensus 184 ~ 184 (263)
T 1xeu_A 184 C 184 (263)
T ss_dssp E
T ss_pred c
Confidence 4
No 114
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=1.7e-11 Score=144.77 Aligned_cols=296 Identities=14% Similarity=0.071 Sum_probs=176.8
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccC---CceEEEEeCCCCCHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---EIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~ 224 (1399)
+..|+||+++++++.+++.... .+...+.+.|+|++|+||||||+.+++. ....+ ..++|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 4679999999999999886421 1234568999999999999999999973 33322 246788877777788888
Q ss_pred HHHHHhccCCCCCCcccHHHHHHHHHHHhc--CCeEEEEEcccCccC----hhhHhhhcccCCC-CCCCcEEEEecCChh
Q 036079 225 KSILNSVASDQCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNES----YNYWSILSCPFEA-VAPGSKIVVTTRNLG 297 (1399)
Q Consensus 225 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~k~~LiVlDdv~~~~----~~~~~~l~~~~~~-~~~~s~iivTtr~~~ 297 (1399)
..++..++........+..+..+.+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 888888865433233345555566666654 458999999996632 1222333222211 233556788887654
Q ss_pred hhhccCC-------CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcC---CChHHHHHHH-hhhc--
Q 036079 298 VTVNMGA-------DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCK---GLPLAAKTLG-SLLR-- 364 (1399)
Q Consensus 298 ~~~~~~~-------~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~-~~l~-- 364 (1399)
....+.. ...+.+++++.++..+++...+..... ...-..++.+.+++.++ |.|..+..+. .+..
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3222211 136899999999999999876421110 01122456677777777 9998443332 2211
Q ss_pred ---CC--CChhHHHHHHhhhhcccccccCCchhhhhccccCCchhhhhhhhhccccCC-C-cccChHHHHHHH--HH--c
Q 036079 365 ---GK--DDPRDWEFVLNTDIWDLQEHKCDIIPALGVSYHFLPPQLKQCFAYCSLFPK-D-YEFHEEEIILLW--IA--E 433 (1399)
Q Consensus 365 ---~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp~-~-~~i~~~~l~~~w--~~--~ 433 (1399)
+. -+.++++.++.... ...+.-.+..+|+..+..+..++...+ + ..+....+.+.. ++ .
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 11 14455555544321 123555667888888887777764322 2 123333332221 11 1
Q ss_pred CCccccCCcccHHHHHHHHHHHHHhccccccc
Q 036079 434 GFLHQANSRRKLEDLGRDFVRELYSRSLFQQS 465 (1399)
Q Consensus 434 g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 465 (1399)
| +. .........+++.|.+.++|+..
T Consensus 323 g-~~-----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 G-VE-----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp T-CC-----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred C-CC-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 2 11 11134567889999999999763
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=7.9e-12 Score=133.44 Aligned_cols=98 Identities=19% Similarity=0.282 Sum_probs=71.7
Q ss_pred cEEEecCCcccccCccccCccccceeeccCccccccch-hhhccccccEEEcCCccccccchhhhcccCcccEEEcCCCc
Q 036079 550 RVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPE-SINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNVD 628 (1399)
Q Consensus 550 r~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~ 628 (1399)
+.++++++.++.+|..+. ++|++|+|++|+|+.+|. .|..+++|++|+|++|......|..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 577888888888887665 678888888888887755 67888888888888865444447778888888888888887
Q ss_pred ccccCCcc-cccccccCccceEE
Q 036079 629 SLEEMPKG-FGKLTCLLTLCTFV 650 (1399)
Q Consensus 629 ~~~~lp~~-~~~L~~L~~L~l~~ 650 (1399)
+..+|.. |..+++|++|++.+
T Consensus 92 -l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 92 -ITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCS
T ss_pred -CCccCHhHccCCCCCCEEECCC
Confidence 5566644 45555555555433
No 116
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.32 E-value=7.7e-12 Score=140.13 Aligned_cols=167 Identities=14% Similarity=0.171 Sum_probs=127.2
Q ss_pred ccCCcCcEEEeecCCCCCCCcc--ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEEE
Q 036079 935 QDVRSLNRLQISRCPQLLSLPE--LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTID 1012 (1399)
Q Consensus 935 ~~l~~L~~L~l~~~~~~~~~~~--~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 1012 (1399)
..+++|+.|++++|. +..++. .+++|++|++++|.+.+..+ +..+++|+.|++++| .+..++.+..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEE
T ss_pred hhcCcccEEEccCCC-cccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChhhccCCCCCEEE
Confidence 456777888888776 444444 45788999999888765444 888899999999985 455667777888999999
Q ss_pred ccCCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCC
Q 036079 1013 IEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCN 1092 (1399)
Q Consensus 1013 Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~ 1092 (1399)
+++|. ++.++. +. .+++|+.|++++|. ++.++.+..+++|+.|++++ +.++.++. + ..+++|+.|++++|
T Consensus 119 L~~n~-i~~~~~-l~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~-N~l~~~~~-l--~~l~~L~~L~L~~N- 188 (291)
T 1h6t_A 119 LEHNG-ISDING-LV--HLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLED-NQISDIVP-L--AGLTKLQNLYLSKN- 188 (291)
T ss_dssp CTTSC-CCCCGG-GG--GCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCS-SCCCCCGG-G--TTCTTCCEEECCSS-
T ss_pred CCCCc-CCCChh-hc--CCCCCCEEEccCCc-CCcchhhccCCCCCEEEccC-Cccccchh-h--cCCCccCEEECCCC-
Confidence 99987 555543 32 38889999999875 55566677788999999998 46777765 2 57899999999986
Q ss_pred CccccccccccCccceeeecccc
Q 036079 1093 SLTHIARIQLAPSLKRLIINSCH 1115 (1399)
Q Consensus 1093 ~l~~~~~~~~~~~L~~L~l~~c~ 1115 (1399)
.++.++.+..+++|+.|++++++
T Consensus 189 ~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 189 HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred cCCCChhhccCCCCCEEECcCCc
Confidence 56677778888999999998864
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=4.4e-12 Score=134.68 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=35.6
Q ss_pred CCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCCCCccceeeecccccceecCc
Q 036079 725 HQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQLPLLKHLEISRMDRVKSVGP 792 (1399)
Q Consensus 725 ~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~~ 792 (1399)
+++|+.|++++|.+..+|...+ ..+++|+.|++++|.. .+.+++|+.|+++.|...+.++.
T Consensus 123 l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 123 LTQLKDLRLYQNQLKSVPDGVF-DRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp CTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSCCB------CCCTTTTHHHHHHHHHCTTTBBC
T ss_pred CCcCCEEECCCCccceeCHHHh-ccCCCccEEEecCCCe------ecCCCCHHHHHHHHHhCCceeec
Confidence 3455555666666665555432 2456677777776633 34456677777777665555543
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=9.1e-12 Score=153.17 Aligned_cols=167 Identities=14% Similarity=0.172 Sum_probs=119.2
Q ss_pred ccCCcCcEEEeecCCCCCCCcc--ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEEE
Q 036079 935 QDVRSLNRLQISRCPQLLSLPE--LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTID 1012 (1399)
Q Consensus 935 ~~l~~L~~L~l~~~~~~~~~~~--~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 1012 (1399)
..+++|+.|++++|. +..++. .+++|+.|+|++|.+.+..+ +..+++|+.|+|++| .+..++.+..+++|+.|+
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCTTSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCChhhccCCCCCEEE
Confidence 456677777777776 444444 35778888888887655444 778888888888885 455566777788888888
Q ss_pred ccCCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCC
Q 036079 1013 IEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCN 1092 (1399)
Q Consensus 1013 Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~ 1092 (1399)
|++|. +..++. +. .+++|+.|+|++|. +..++.+..+++|+.|+|++| .++.++. + ..+++|+.|+|++|
T Consensus 116 Ls~N~-l~~l~~-l~--~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N-~l~~~~~-l--~~l~~L~~L~Ls~N- 185 (605)
T 1m9s_A 116 LEHNG-ISDING-LV--HLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN-QISDIVP-L--AGLTKLQNLYLSKN- 185 (605)
T ss_dssp CTTSC-CCCCGG-GG--GCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-
T ss_pred ecCCC-CCCCcc-cc--CCCccCEEECCCCc-cCCchhhcccCCCCEEECcCC-cCCCchh-h--ccCCCCCEEECcCC-
Confidence 88887 455543 22 27888888888865 555566677788888888884 5666654 2 56788888888876
Q ss_pred CccccccccccCccceeeecccc
Q 036079 1093 SLTHIARIQLAPSLKRLIINSCH 1115 (1399)
Q Consensus 1093 ~l~~~~~~~~~~~L~~L~l~~c~ 1115 (1399)
.++.++.+..+++|+.|++++|+
T Consensus 186 ~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 186 HISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCCBCGGGTTCTTCSEEECCSEE
T ss_pred CCCCChHHccCCCCCEEEccCCc
Confidence 45566777888888888888765
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=2.3e-11 Score=130.84 Aligned_cols=82 Identities=23% Similarity=0.278 Sum_probs=50.0
Q ss_pred ccEEEecCCcccccCccccCccccceeeccCcccccc-chhhhccccccEEEcCCccccccchh-hhcccCcccEEEcCC
Q 036079 549 LRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKKLCK-DMGNLIKLHHLRNSN 626 (1399)
Q Consensus 549 Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~ 626 (1399)
-+.++.+++.+..+|..+. ++|++|+|++|.|+.+ |..|..+++|++|+|++|. +..+|. .|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 3456666666666665554 5666777777766655 4556666667777776643 444543 356666666666666
Q ss_pred CcccccCC
Q 036079 627 VDSLEEMP 634 (1399)
Q Consensus 627 n~~~~~lp 634 (1399)
|. +..+|
T Consensus 98 N~-l~~l~ 104 (229)
T 3e6j_A 98 NQ-LTVLP 104 (229)
T ss_dssp SC-CCCCC
T ss_pred Cc-CCccC
Confidence 65 44443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=4.3e-12 Score=129.42 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=83.7
Q ss_pred CCCCcccEEEecCCccc--ccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccE
Q 036079 544 LNLPRLRVFSLHGYCVS--KLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHH 621 (1399)
Q Consensus 544 ~~l~~Lr~L~L~~n~i~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 621 (1399)
...++|+.|++++|.++ .+|..+..+++|++|+|++|.|+.+ ..+..+++|++|++++|.....+|..+..+++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34478888888888888 7888888888888888888888877 77888888888888886554447777778888888
Q ss_pred EEcCCCcccccCC--cccccccccCccceEEec
Q 036079 622 LRNSNVDSLEEMP--KGFGKLTCLLTLCTFVVG 652 (1399)
Q Consensus 622 L~l~~n~~~~~lp--~~~~~L~~L~~L~l~~~~ 652 (1399)
|++++|. +..+| ..+..+++|++|++.+|.
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc
Confidence 8888887 66665 567777777777765544
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=4e-12 Score=135.77 Aligned_cols=130 Identities=23% Similarity=0.258 Sum_probs=102.5
Q ss_pred CCCcchhhHHhhhcCCCCcccEEEecCCccccc-CccccCccccceeeccCccccccchh-hhccccccEEEcCCccccc
Q 036079 530 YEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQILPES-INSLYNLHTILLENCHRLK 607 (1399)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~ 607 (1399)
+++|.+....+..|..+++|++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|.. |..+++|++|+|++|....
T Consensus 39 l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence 455666544445688899999999999999887 78899999999999999999988765 5789999999999965545
Q ss_pred cchhhhcccCcccEEEcCCCcccccCCc-ccccccccCccceEEeccCCCCChh
Q 036079 608 KLCKDMGNLIKLHHLRNSNVDSLEEMPK-GFGKLTCLLTLCTFVVGKDGGSGLR 660 (1399)
Q Consensus 608 ~lp~~i~~L~~L~~L~l~~n~~~~~lp~-~~~~L~~L~~L~l~~~~~~~~~~~~ 660 (1399)
..|..|..+++|++|++++|. +..+|. .|..+++|++|++.+|.+.....+.
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred eCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 556778899999999999998 556654 5888899999988877765544433
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.26 E-value=4.9e-12 Score=146.94 Aligned_cols=98 Identities=22% Similarity=0.301 Sum_probs=50.6
Q ss_pred cEEEecCCcccccCccccCccccceeeccCccccccchh-hh-ccccccEEEcCCccccccch-hhhcccCcccEEEcCC
Q 036079 550 RVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPES-IN-SLYNLHTILLENCHRLKKLC-KDMGNLIKLHHLRNSN 626 (1399)
Q Consensus 550 r~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~-~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 626 (1399)
++++++++.++.+|..+.. .+++|+|++|+|+.+|.. +. .+++|++|+|++|. +..+| ..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCCC--CCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCC
Confidence 4555555555555554432 355566666666555433 33 55566666665543 33333 3455566666666666
Q ss_pred CcccccCCc-ccccccccCccceEEe
Q 036079 627 VDSLEEMPK-GFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 627 n~~~~~lp~-~~~~L~~L~~L~l~~~ 651 (1399)
|. +..+|. .|..+++|++|++.+|
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred Cc-CCcCCHHHhCCCcCCCEEECCCC
Confidence 55 333332 3555555555554433
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=2.8e-11 Score=129.20 Aligned_cols=95 Identities=19% Similarity=0.219 Sum_probs=66.8
Q ss_pred cEEEecCCcccccCccccCccccceeeccCccccccc--hhhhccccccEEEcCCccccccch-hhhcccCcccEEEcCC
Q 036079 550 RVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILP--ESINSLYNLHTILLENCHRLKKLC-KDMGNLIKLHHLRNSN 626 (1399)
Q Consensus 550 r~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 626 (1399)
+.+++++|.++.+|..+.. .+++|+|++|.|+.++ ..|..+++|++|+|++|. +..+| ..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCC
Confidence 5788888888888876643 5678888888888773 347888888888888854 44444 4688888888888888
Q ss_pred CcccccCCc-ccccccccCccce
Q 036079 627 VDSLEEMPK-GFGKLTCLLTLCT 648 (1399)
Q Consensus 627 n~~~~~lp~-~~~~L~~L~~L~l 648 (1399)
|. +..+|. .|+.+++|++|++
T Consensus 91 N~-l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 91 NR-LENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp SC-CCCCCGGGGTTCSSCCEEEC
T ss_pred Cc-cCccCHhHhcCCcCCCEEEC
Confidence 87 444443 3555555555544
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=2.2e-13 Score=166.65 Aligned_cols=177 Identities=15% Similarity=0.039 Sum_probs=116.5
Q ss_pred cCCCCcccEEEecCCcccccCccccCccccceeeccCcc-------------cc-ccchhhhccccccEEE-cCCccccc
Q 036079 543 LLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTE-------------IQ-ILPESINSLYNLHTIL-LENCHRLK 607 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~-------------i~-~lp~~i~~L~~L~~L~-L~~~~~l~ 607 (1399)
+..+++|+.|+|++|.+..+|+.++++++|+.|++++|. +. .+|..++.+++|+.|+ ++. +.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccc
Confidence 366788888999999888889889999999999887764 22 4566778888888888 554 3333
Q ss_pred cchh------hhccc--CcccEEEcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCC
Q 036079 608 KLCK------DMGNL--IKLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLEN 679 (1399)
Q Consensus 608 ~lp~------~i~~L--~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~ 679 (1399)
.++. .+..+ ..|++|++++|. +..+|. ++.+++|+.|++.+|.+..
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~------------------------ 477 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRA------------------------ 477 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCC------------------------
T ss_pred hhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccc------------------------
Confidence 4432 12221 257788888887 666775 7777777777765543321
Q ss_pred CCCcchhhhhhccCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEee
Q 036079 680 VKDVGDAREAQLNGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFE 759 (1399)
Q Consensus 680 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~ 759 (1399)
++..+..+++|+.|++++|.++.+| .+ ..+++|+.|+++
T Consensus 478 --------------------------------------lp~~~~~l~~L~~L~Ls~N~l~~lp-~l--~~l~~L~~L~Ls 516 (567)
T 1dce_A 478 --------------------------------------LPPALAALRCLEVLQASDNALENVD-GV--ANLPRLQELLLC 516 (567)
T ss_dssp --------------------------------------CCGGGGGCTTCCEEECCSSCCCCCG-GG--TTCSSCCEEECC
T ss_pred --------------------------------------cchhhhcCCCCCEEECCCCCCCCCc-cc--CCCCCCcEEECC
Confidence 1112334556667777777777766 33 346677777777
Q ss_pred CCCCCCCC-C-CCCCCCccceeeecccccc
Q 036079 760 GCGKCTSL-P-SVGQLPLLKHLEISRMDRV 787 (1399)
Q Consensus 760 ~~~~~~~l-~-~l~~l~~L~~L~Ls~~~~~ 787 (1399)
+|.+.... | .++.+++|+.|++++|...
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 77665553 3 5677777777777776543
No 125
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=6.4e-12 Score=133.38 Aligned_cols=106 Identities=28% Similarity=0.395 Sum_probs=80.8
Q ss_pred CCcccEEEecCCcccccCc-cccCccccceeeccCccccccchh-hhccccccEEEcCCccccccchh-hhcccCcccEE
Q 036079 546 LPRLRVFSLHGYCVSKLPN-EIGNLKHLRFLNLSGTEIQILPES-INSLYNLHTILLENCHRLKKLCK-DMGNLIKLHHL 622 (1399)
Q Consensus 546 l~~Lr~L~L~~n~i~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L 622 (1399)
.++|++|++++|.++.+|. .|.++++|++|+|++|+++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEE
Confidence 3578888888888888754 578888889999988888877654 5788888899988864 445554 46888888888
Q ss_pred EcCCCcccccCCcc-cccccccCccceEEecc
Q 036079 623 RNSNVDSLEEMPKG-FGKLTCLLTLCTFVVGK 653 (1399)
Q Consensus 623 ~l~~n~~~~~lp~~-~~~L~~L~~L~l~~~~~ 653 (1399)
++++|. +..+|.. +..+++|++|++.+|.+
T Consensus 106 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 106 ALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EcCCCc-CcccCHhHhccCCcCCEEECCCCcc
Confidence 888887 5566544 67888888887755543
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=6.5e-12 Score=134.11 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=98.8
Q ss_pred CCCcchhhHHhh-hcCCCCcccEEEecCCcccccC-ccccCccccceeeccCccccccch-hhhccccccEEEcCCcccc
Q 036079 530 YEGNYLAWSVLQ-MLLNLPRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQILPE-SINSLYNLHTILLENCHRL 606 (1399)
Q Consensus 530 ~~~~~~~~~~~~-~~~~l~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l 606 (1399)
+++|.+....+. .|..+++|++|+|++|.++.++ ..|.++++|++|+|++|.|+.+|. .|..+++|++|+|++|...
T Consensus 39 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 39 LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp CCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred cCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence 445555544333 3778888999999999888875 478888999999999998887755 4888889999999886555
Q ss_pred ccchhhhcccCcccEEEcCCCcccccCCcccccccccCccceEEeccCCCCChh
Q 036079 607 KKLCKDMGNLIKLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLR 660 (1399)
Q Consensus 607 ~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~ 660 (1399)
...|..|..+++|++|++++|.+....|..|..+++|++|++.+|.+.....+.
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 555677888899999999888844444677888888888888877766544433
No 127
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=3.6e-11 Score=126.13 Aligned_cols=146 Identities=17% Similarity=0.163 Sum_probs=67.3
Q ss_pred cccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEEEccCCCccccCccccccCccCCcceEEe
Q 036079 960 RLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKI 1039 (1399)
Q Consensus 960 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~l 1039 (1399)
+|++|++++|.+. .+| .+..+++|++|++++| .+..++.+..+++|++|++++|......+..+.. +++|++|++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSG--LTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTT--CTTCCEEEC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcC--CCCCCEEEe
Confidence 3444444444432 233 3444555555555554 3333334444455555555555432223333222 455555555
Q ss_pred cCCCCccc-cCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCccccccccccCccceeeeccc
Q 036079 1040 RYCKSLVS-FPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHIARIQLAPSLKRLIINSC 1114 (1399)
Q Consensus 1040 s~~~~l~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~L~~L~l~~c 1114 (1399)
++|..... .+.+..+++|++|++++|..++.++. + ..+++|++|++++|. +++++.+..+++|++|+++++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-l--~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-L--KTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-G--GGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh-h--cCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCc
Confidence 55442221 12233445555555555443555542 1 345566666665542 344445555566666666553
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.21 E-value=8.6e-12 Score=137.26 Aligned_cols=105 Identities=21% Similarity=0.173 Sum_probs=82.9
Q ss_pred hcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccE
Q 036079 542 MLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHH 621 (1399)
Q Consensus 542 ~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 621 (1399)
.+..+++|++|++++|.++.+| .+..+++|++|+|++|.|+.+|. +..+++|++|++++| .+..+|... . ++|++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~-~-~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIP-S-ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCC-C-SSCCE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCccc-c-CcccE
Confidence 3556788888999998888887 68888899999999998888877 888889999999885 566666533 3 88999
Q ss_pred EEcCCCcccccCCcccccccccCccceEEecc
Q 036079 622 LRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGK 653 (1399)
Q Consensus 622 L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~ 653 (1399)
|++++|. +..+| .++.+++|++|++.+|.+
T Consensus 111 L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 111 LFLDNNE-LRDTD-SLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp EECCSSC-CSBSG-GGTTCTTCCEEECTTSCC
T ss_pred EEccCCc-cCCCh-hhcCcccccEEECCCCcC
Confidence 9998887 66665 588888888888765544
No 129
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.21 E-value=1.3e-10 Score=127.68 Aligned_cols=199 Identities=19% Similarity=0.153 Sum_probs=120.5
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
..++||+..++.+..++... ...+++.|+|++|+||||+|+.+++.......+. . ..+. .... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~-----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~--~-~~~~---~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--A-TPCG---VCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT-----CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSC--S-SCCS---CSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--C-CCCc---ccHH-HHHHh
Confidence 46999999999999999653 2235889999999999999999986322111110 0 0000 0000 01111
Q ss_pred HhccCC----CCCCcccHHHHHHHHHHH----hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhh-
Q 036079 229 NSVASD----QCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVT- 299 (1399)
Q Consensus 229 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~- 299 (1399)
...... ........+.....+... ..+++.+||+||++......++.+...+.....+.++|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 000000 000111222222222221 23578999999998876666777766655555678888888764321
Q ss_pred hc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 300 VN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 300 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
.. ......+++.+++.++..+++...+..... .-.++..+.|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 112246899999999999999987643221 1124667899999999999988876544
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.20 E-value=1.6e-11 Score=132.01 Aligned_cols=124 Identities=22% Similarity=0.340 Sum_probs=89.4
Q ss_pred CCCcchhhHHhhhcCCCCcccEEEecCCcccccC-ccccCccccceeeccCccccccchh-hhccccccEEEcCCccccc
Q 036079 530 YEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQILPES-INSLYNLHTILLENCHRLK 607 (1399)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~ 607 (1399)
+++|.+....+..|..+++|++|+|++|.+..+| ..|.++++|++|+|++|.|+.+|.. +..+++|++|+|++| .+.
T Consensus 47 Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~ 125 (229)
T 3e6j_A 47 LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLT 125 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred cCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-ccc
Confidence 4456665555666777888888888888887775 4467788888888888888877554 577888888888874 466
Q ss_pred cchhhhcccCcccEEEcCCCcccccCCc-ccccccccCccceEEeccCC
Q 036079 608 KLCKDMGNLIKLHHLRNSNVDSLEEMPK-GFGKLTCLLTLCTFVVGKDG 655 (1399)
Q Consensus 608 ~lp~~i~~L~~L~~L~l~~n~~~~~lp~-~~~~L~~L~~L~l~~~~~~~ 655 (1399)
.+|..+..+++|++|++++|. +..+|. .+..+++|+.|++.+|.+..
T Consensus 126 ~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 126 ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 777777888888888888877 556653 47777777777776665543
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=1.1e-11 Score=126.33 Aligned_cols=122 Identities=20% Similarity=0.180 Sum_probs=105.6
Q ss_pred CCCcchh-hHHhhhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccc-cchhhhccccccEEEcCCccccc
Q 036079 530 YEGNYLA-WSVLQMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQI-LPESINSLYNLHTILLENCHRLK 607 (1399)
Q Consensus 530 ~~~~~~~-~~~~~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~i~~L~~L~~L~L~~~~~l~ 607 (1399)
+++|.+. +.+|..+..+++|++|++++|.++.+ ..|..+++|++|+|++|.++. +|..+..+++|++|++++| .+.
T Consensus 31 l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 108 (168)
T 2ell_A 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLK 108 (168)
T ss_dssp CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCC
T ss_pred CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccC
Confidence 4455665 46666688999999999999999988 889999999999999999997 7888888999999999996 567
Q ss_pred cch--hhhcccCcccEEEcCCCcccccCCc----ccccccccCccceEEeccC
Q 036079 608 KLC--KDMGNLIKLHHLRNSNVDSLEEMPK----GFGKLTCLLTLCTFVVGKD 654 (1399)
Q Consensus 608 ~lp--~~i~~L~~L~~L~l~~n~~~~~lp~----~~~~L~~L~~L~l~~~~~~ 654 (1399)
.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++..+...
T Consensus 109 ~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 109 DISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 766 679999999999999998 777776 7899999999999887653
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=9.8e-12 Score=123.82 Aligned_cols=115 Identities=18% Similarity=0.184 Sum_probs=80.9
Q ss_pred CCcchh-hHHhhhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccc-cchhhhccccccEEEcCCcccccc
Q 036079 531 EGNYLA-WSVLQMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQI-LPESINSLYNLHTILLENCHRLKK 608 (1399)
Q Consensus 531 ~~~~~~-~~~~~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~i~~L~~L~~L~L~~~~~l~~ 608 (1399)
++|.+. +.+|..+..+++|++|++++|.++.+ ..|+++++|++|+|++|.|+. +|..+..+++|++|++++|. +..
T Consensus 25 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~ 102 (149)
T 2je0_A 25 DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKD 102 (149)
T ss_dssp TTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCS
T ss_pred cCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCC
Confidence 344554 45555667777888888888777777 667777788888888887776 67667777788888887753 555
Q ss_pred ch--hhhcccCcccEEEcCCCcccccCCc----ccccccccCccce
Q 036079 609 LC--KDMGNLIKLHHLRNSNVDSLEEMPK----GFGKLTCLLTLCT 648 (1399)
Q Consensus 609 lp--~~i~~L~~L~~L~l~~n~~~~~lp~----~~~~L~~L~~L~l 648 (1399)
+| ..++.+++|++|++++|. +..+|. .++.+++|+.|++
T Consensus 103 ~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 103 LSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred hHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 43 667777888888887776 555554 4677777777654
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=1.4e-11 Score=122.76 Aligned_cols=110 Identities=17% Similarity=0.183 Sum_probs=97.2
Q ss_pred CCCCcccEEEecCCccc--ccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccE
Q 036079 544 LNLPRLRVFSLHGYCVS--KLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHH 621 (1399)
Q Consensus 544 ~~l~~Lr~L~L~~n~i~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 621 (1399)
...++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+..+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 34578999999999998 8899999999999999999999988 78999999999999997655558888899999999
Q ss_pred EEcCCCcccccCC--cccccccccCccceEEeccCC
Q 036079 622 LRNSNVDSLEEMP--KGFGKLTCLLTLCTFVVGKDG 655 (1399)
Q Consensus 622 L~l~~n~~~~~lp--~~~~~L~~L~~L~l~~~~~~~ 655 (1399)
|++++|. +..+| ..++.+++|++|++.+|....
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 9999998 66655 789999999999998776654
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=2.4e-11 Score=126.60 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=98.2
Q ss_pred HHhhhcCCCCcccEEEecCCcccccCc--cccCccccceeeccCcccccc-chhhhccccccEEEcCCccccccchhhhc
Q 036079 538 SVLQMLLNLPRLRVFSLHGYCVSKLPN--EIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKKLCKDMG 614 (1399)
Q Consensus 538 ~~~~~~~~l~~Lr~L~L~~n~i~~lp~--~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 614 (1399)
.+|..+.. +|++|++++|.++.+|. .|+++++|++|+|++|.|+.+ |..|..+++|++|+|++|......|..|.
T Consensus 22 ~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 99 (192)
T 1w8a_A 22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL 99 (192)
T ss_dssp SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST
T ss_pred cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc
Confidence 34444433 89999999999998865 389999999999999999977 77899999999999999755444455689
Q ss_pred ccCcccEEEcCCCcccccCCcccccccccCccceEEeccCCCCC
Q 036079 615 NLIKLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSG 658 (1399)
Q Consensus 615 ~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~ 658 (1399)
.+++|++|++++|.+....|..+..+++|++|++.+|.+.....
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999999999656667889999999999998887765443
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=1.9e-12 Score=158.33 Aligned_cols=183 Identities=16% Similarity=0.200 Sum_probs=137.2
Q ss_pred CCCCcchhhHHhhhcCCCCcccEEEecCCc-------------cc-ccCccccCccccceee-ccCccccccch------
Q 036079 529 NYEGNYLAWSVLQMLLNLPRLRVFSLHGYC-------------VS-KLPNEIGNLKHLRFLN-LSGTEIQILPE------ 587 (1399)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~-------------i~-~lp~~~~~l~~L~~L~-Ls~n~i~~lp~------ 587 (1399)
+++.|.+. .+|..+.++++|+.|++++|. +. .+|..++.+++|+.|+ ++.|.+..++.
T Consensus 355 ~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n 433 (567)
T 1dce_A 355 ELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433 (567)
T ss_dssp CCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred cCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcc
Confidence 35566664 788889999999999997764 22 3477888999999998 67776655543
Q ss_pred hhhcc--ccccEEEcCCccccccchhhhcccCcccEEEcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCc
Q 036079 588 SINSL--YNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSL 665 (1399)
Q Consensus 588 ~i~~L--~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L 665 (1399)
.+..+ ..|++|+|++| .+..+|. |+.+++|++|++++|. +..+|..++.+++|+.|++.+|.+.+.
T Consensus 434 ~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~l--------- 501 (567)
T 1dce_A 434 SVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENV--------- 501 (567)
T ss_dssp HHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCC---------
T ss_pred cccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCC---------
Confidence 22222 35899999995 5777887 9999999999999998 679999999999999998876654320
Q ss_pred ccccCceEEeccCCCCCcchhhhhhccCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCC--Cc
Q 036079 666 THLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKF--PN 743 (1399)
Q Consensus 666 ~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--p~ 743 (1399)
+.+..+++|+.|++++|.++.+ |.
T Consensus 502 ------------------------------------------------------p~l~~l~~L~~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 502 ------------------------------------------------------DGVANLPRLQELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp ------------------------------------------------------GGGTTCSSCCEEECCSSCCCSSSTTG
T ss_pred ------------------------------------------------------cccCCCCCCcEEECCCCCCCCCCCcH
Confidence 1234466788888899998887 77
Q ss_pred ccCcCCCcceeEEEeeCCCCCCCCCCCC----CCCccceee
Q 036079 744 WLGESSFLKLLFLRFEGCGKCTSLPSVG----QLPLLKHLE 780 (1399)
Q Consensus 744 ~~~~~~~~~L~~L~l~~~~~~~~l~~l~----~l~~L~~L~ 780 (1399)
.+. .+++|+.|++++|.+...+|... .+|+|+.|+
T Consensus 528 ~l~--~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 528 PLV--SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGG--GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred HHh--cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 764 58899999999998776666433 267777765
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=4.9e-11 Score=124.09 Aligned_cols=114 Identities=22% Similarity=0.283 Sum_probs=97.2
Q ss_pred CcccEEEecCCcccccCccccCccccceeeccCccccccc-hhhhccccccEEEcCCccccccchhhhcccCcccEEEcC
Q 036079 547 PRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILP-ESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNS 625 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 625 (1399)
++|++|+|++|.++.+|..|.++++|++|+|++|.|+.++ ..|..+++|++|+|++|......|..|..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5899999999999999999999999999999999999886 569999999999999975444445579999999999999
Q ss_pred CCcccccCCc-ccccccccCccceEEeccCCCCChhc
Q 036079 626 NVDSLEEMPK-GFGKLTCLLTLCTFVVGKDGGSGLRE 661 (1399)
Q Consensus 626 ~n~~~~~lp~-~~~~L~~L~~L~l~~~~~~~~~~~~~ 661 (1399)
+|. +..+|. .|..+++|+.|++.+|.......+..
T Consensus 111 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 111 GND-ISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CCC-CCeeChhhhhcCccccEEEeCCCCeecCCcCHH
Confidence 998 677776 48899999999998887765444443
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=4.1e-11 Score=139.15 Aligned_cols=105 Identities=21% Similarity=0.166 Sum_probs=85.2
Q ss_pred CcccEEEecCCcccccC-cccc-CccccceeeccCccccccc-hhhhccccccEEEcCCccccccchh-hhcccCcccEE
Q 036079 547 PRLRVFSLHGYCVSKLP-NEIG-NLKHLRFLNLSGTEIQILP-ESINSLYNLHTILLENCHRLKKLCK-DMGNLIKLHHL 622 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~lp-~~~~-~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L 622 (1399)
+.+++|+|++|.++.+| ..|. ++++|++|+|++|+|+.+| ..|..+++|++|+|++|. +..+|. .|..+++|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEE
Confidence 45899999999999885 4566 8999999999999999886 569999999999999965 555554 68999999999
Q ss_pred EcCCCcccccCCcccccccccCccceEEec
Q 036079 623 RNSNVDSLEEMPKGFGKLTCLLTLCTFVVG 652 (1399)
Q Consensus 623 ~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~ 652 (1399)
++++|.+....|..|..+++|++|++.+|.
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence 999998443345667777777777765553
No 138
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.12 E-value=6.1e-10 Score=120.05 Aligned_cols=186 Identities=13% Similarity=0.066 Sum_probs=116.2
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCC-ceEEEEeCCCCCHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 227 (1399)
..++||+..++++.+++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 46999999999999999643 223489999999999999999987321 11121 22333333332222221111
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhh-hc-cCCC
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVT-VN-MGAD 305 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~-~~-~~~~ 305 (1399)
..+.... ....+++.+||+||++......++.+...+.....+.++|+||+..... .. ....
T Consensus 90 -~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 90 -KEFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp -HHHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred -HHHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 1110000 0113578999999998876555666655555555677888888765321 11 1112
Q ss_pred CceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHh
Q 036079 306 PAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGS 361 (1399)
Q Consensus 306 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 361 (1399)
..+.+.+++.++..+++.+.+..... . -.++..+.|++.++|.|..+..+..
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGV-K---ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 36899999999999999887642111 1 1246678899999999986555443
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=4.8e-11 Score=151.01 Aligned_cols=114 Identities=20% Similarity=0.215 Sum_probs=101.8
Q ss_pred HhhhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCc
Q 036079 539 VLQMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIK 618 (1399)
Q Consensus 539 ~~~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 618 (1399)
.+..|..++.|++|+|++|.+..+|..+.++++|++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..|+.|++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ 294 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCC
Confidence 345589999999999999999999988889999999999999999999999999999999999965 6699999999999
Q ss_pred ccEEEcCCCcccccCCcccccccccCccceEEeccC
Q 036079 619 LHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKD 654 (1399)
Q Consensus 619 L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~ 654 (1399)
|++|+|++|. +..+|.+|++|++|++|++.+|.+.
T Consensus 295 L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 9999999998 7899999999999999999877654
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.10 E-value=7e-11 Score=121.27 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=74.3
Q ss_pred cccEEEecCCcccccCccccCccccceeeccCccccccchhh-hccccccEEEcCCccccccchh--hhcccCcccEEEc
Q 036079 548 RLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESI-NSLYNLHTILLENCHRLKKLCK--DMGNLIKLHHLRN 624 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l 624 (1399)
+|++|++++|.++.+ ..|.++++|++|+|++|.|+.+|+.+ ..+++|++|++++| .+..+|. .+..+++|++|++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEe
Confidence 777788887777776 56777777888888887777776554 77777888888774 4566666 6777777888888
Q ss_pred CCCcccccCCcc----cccccccCccceEEec
Q 036079 625 SNVDSLEEMPKG----FGKLTCLLTLCTFVVG 652 (1399)
Q Consensus 625 ~~n~~~~~lp~~----~~~L~~L~~L~l~~~~ 652 (1399)
++|. +..+|.. ++.+++|+.|++..+.
T Consensus 121 ~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 121 LRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 7777 5566664 6777777777776554
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.09 E-value=1.2e-10 Score=121.24 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=83.2
Q ss_pred cEEEecCCcccccCccccCccccceeeccCccccccchh--hhccccccEEEcCCccccccchhhhcccCcccEEEcCCC
Q 036079 550 RVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPES--INSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNV 627 (1399)
Q Consensus 550 r~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~--i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n 627 (1399)
+++++++|.++.+|..+.. +|++|+|++|.|+.+|.. ++.+++|++|+|++|......|..|..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7899999999999987765 999999999999988764 899999999999997655555888999999999999999
Q ss_pred cccccCC-cccccccccCccceEEec
Q 036079 628 DSLEEMP-KGFGKLTCLLTLCTFVVG 652 (1399)
Q Consensus 628 ~~~~~lp-~~~~~L~~L~~L~l~~~~ 652 (1399)
. +..+| ..|..+++|++|++.+|.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCc
Confidence 8 44444 447777777777765544
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.07 E-value=1.5e-11 Score=155.72 Aligned_cols=101 Identities=19% Similarity=0.084 Sum_probs=77.3
Q ss_pred EEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcCCCccc
Q 036079 551 VFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNVDSL 630 (1399)
Q Consensus 551 ~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~ 630 (1399)
.+++..|.+...|+.|..+..|++|+|++|.|..+|..+.++++|++|+|++| .+..+|..|++|++|++|+|++|. +
T Consensus 205 ~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l 282 (727)
T 4b8c_D 205 EDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-L 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-C
T ss_pred CccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-C
Confidence 34455566665688899999999999999999999999999999999999996 566999999999999999999999 6
Q ss_pred ccCCcccccccccCccceEEecc
Q 036079 631 EEMPKGFGKLTCLLTLCTFVVGK 653 (1399)
Q Consensus 631 ~~lp~~~~~L~~L~~L~l~~~~~ 653 (1399)
..+|..|++|++|++|++.+|.+
T Consensus 283 ~~lp~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 283 TSLPAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp SSCCSSGGGGTTCSEEECCSSCC
T ss_pred CccChhhcCCCCCCEEECCCCCC
Confidence 69999999999999998866643
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.06 E-value=1.3e-10 Score=119.21 Aligned_cols=108 Identities=26% Similarity=0.357 Sum_probs=94.2
Q ss_pred cCCCCcccEEEecCCcccccCccccCcc-ccceeeccCccccccchhhhccccccEEEcCCccccccchhh-hcccCccc
Q 036079 543 LLNLPRLRVFSLHGYCVSKLPNEIGNLK-HLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKD-MGNLIKLH 620 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i~~lp~~~~~l~-~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~ 620 (1399)
+.++.+|+.|++++|.++.+|. +..+. +|++|+|++|.|+.+ +.+..+++|++|++++| .+..+|.. +..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 7788999999999999999875 55555 999999999999988 68999999999999996 56677755 59999999
Q ss_pred EEEcCCCcccccCCc--ccccccccCccceEEeccC
Q 036079 621 HLRNSNVDSLEEMPK--GFGKLTCLLTLCTFVVGKD 654 (1399)
Q Consensus 621 ~L~l~~n~~~~~lp~--~~~~L~~L~~L~l~~~~~~ 654 (1399)
+|++++|. +..+|. .+..+++|+.|++.+|.+.
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 99999998 788886 7899999999999877654
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=4.5e-12 Score=133.13 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=96.8
Q ss_pred hhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCccc
Q 036079 541 QMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLH 620 (1399)
Q Consensus 541 ~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 620 (1399)
..|..+++|++|++++|.++.+| .+.++++|++|++++|.|+.+|..+..+++|++|++++| .+..+| .+..+++|+
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence 37888999999999999999998 899999999999999999999998999999999999996 566777 699999999
Q ss_pred EEEcCCCcccccCCc--ccccccccCccceEEeccC
Q 036079 621 HLRNSNVDSLEEMPK--GFGKLTCLLTLCTFVVGKD 654 (1399)
Q Consensus 621 ~L~l~~n~~~~~lp~--~~~~L~~L~~L~l~~~~~~ 654 (1399)
+|++++|. +..+|. .+..+++|++|++.+|...
T Consensus 119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred EEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccc
Confidence 99999998 666554 6888999999998777553
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.02 E-value=1.4e-09 Score=124.31 Aligned_cols=268 Identities=16% Similarity=0.097 Sum_probs=145.6
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
..|+|++..++++.+++..... .....+.+.|+|++|+|||++|+.+++. ... ..++++++......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~------ 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGD------ 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHH------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHH------
Confidence 4699999999998888853211 1123357889999999999999999873 221 223443332222111
Q ss_pred HhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCC------------------CCCcEEE
Q 036079 229 NSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAV------------------APGSKIV 290 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~------------------~~~s~ii 290 (1399)
+...+...+ .++.+|++|+++.........+...+... ..+.++|
T Consensus 80 ----------------l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 80 ----------------LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ----------------HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ----------------HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 111111111 35568899999776544433332222111 1235566
Q ss_pred EecCChh-hhhccC-C-CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCC-
Q 036079 291 VTTRNLG-VTVNMG-A-DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGK- 366 (1399)
Q Consensus 291 vTtr~~~-~~~~~~-~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~- 366 (1399)
.||.... +...+. . ...+.+.+++.++..+++...+.... .. -.++....+++.++|.|-.+..+...+...
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-VR---ITEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-CC---CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-CC---CCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6666432 211111 1 13689999999999999988764322 11 225677889999999998887765544221
Q ss_pred -----C--ChhHHHHHHhhhhcccccccCCchhhhhccccCCchhhhhhhhhccccCCCc-----------ccChHHHHH
Q 036079 367 -----D--DPRDWEFVLNTDIWDLQEHKCDIIPALGVSYHFLPPQLKQCFAYCSLFPKDY-----------EFHEEEIIL 428 (1399)
Q Consensus 367 -----~--~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp~~~-----------~i~~~~l~~ 428 (1399)
. +.+....++.. +...+..++...+..+..+.-.-.+- .+++..+.+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 1 22333333322 11223344444444443332111111 123333322
Q ss_pred ----HHHHcCCccccCCcccHHHHHHHHHH-HHHhcccccc
Q 036079 429 ----LWIAEGFLHQANSRRKLEDLGRDFVR-ELYSRSLFQQ 464 (1399)
Q Consensus 429 ----~w~~~g~i~~~~~~~~~~~~~~~~~~-~L~~~~l~~~ 464 (1399)
+-+..|++.....+....+.|.+|+. ++.+|+|||+
T Consensus 284 ~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 35667888765566667788888887 8888888875
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.02 E-value=4.9e-10 Score=116.49 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=88.8
Q ss_pred cEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcCCCcc
Q 036079 550 RVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNVDS 629 (1399)
Q Consensus 550 r~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~ 629 (1399)
+++++++|.++.+|..+. ++|++|+|++|.|+.+|..|..+++|++|+|++|......|..|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-
Confidence 689999999999998765 58999999999999999999999999999999975444445679999999999999999
Q ss_pred cccCC-cccccccccCccceEEeccC
Q 036079 630 LEEMP-KGFGKLTCLLTLCTFVVGKD 654 (1399)
Q Consensus 630 ~~~lp-~~~~~L~~L~~L~l~~~~~~ 654 (1399)
+..+| ..|..+++|++|++.+|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 56665 56999999999999877654
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=6e-10 Score=113.49 Aligned_cols=102 Identities=21% Similarity=0.357 Sum_probs=65.4
Q ss_pred cEEEecCCcccccCccccCccccceeeccCcccccc-chhhhccccccEEEcCCccccccchhh-hcccCcccEEEcCCC
Q 036079 550 RVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKKLCKD-MGNLIKLHHLRNSNV 627 (1399)
Q Consensus 550 r~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~n 627 (1399)
+.+++++|.+..+|..+. ++|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|.. |.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 566777777766666554 6677777777777655 445666777777777764 45555544 466777777777776
Q ss_pred cccccCCcc-cccccccCccceEEeccCC
Q 036079 628 DSLEEMPKG-FGKLTCLLTLCTFVVGKDG 655 (1399)
Q Consensus 628 ~~~~~lp~~-~~~L~~L~~L~l~~~~~~~ 655 (1399)
. +..+|.. |..+++|++|++.+|.+..
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred c-cceeCHHHhccccCCCEEEeCCCCccc
Confidence 6 5555544 6667777777666665543
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=6.4e-10 Score=112.94 Aligned_cols=104 Identities=22% Similarity=0.313 Sum_probs=79.5
Q ss_pred cccEEEecCCcccccCccccCccccceeeccCcccccc-chhhhccccccEEEcCCccccccchhh-hcccCcccEEEcC
Q 036079 548 RLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKKLCKD-MGNLIKLHHLRNS 625 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 625 (1399)
..+++++++|.++.+|..+. ++|++|+|++|.|+.+ |..|..+++|++|+|++| .+..+|.. |..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 35678888888888887664 7888888888888877 566888888888888885 45555554 6788888888888
Q ss_pred CCcccccCCc-ccccccccCccceEEeccCC
Q 036079 626 NVDSLEEMPK-GFGKLTCLLTLCTFVVGKDG 655 (1399)
Q Consensus 626 ~n~~~~~lp~-~~~~L~~L~~L~l~~~~~~~ 655 (1399)
+|. +..+|. .|..+++|++|++.+|.+..
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 887 666665 47888888888887776654
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.94 E-value=1.3e-09 Score=111.94 Aligned_cols=107 Identities=26% Similarity=0.378 Sum_probs=89.9
Q ss_pred CcccEEEecCCcccccC-ccccCccccceeeccCccccccchh-hhccccccEEEcCCccccccchh-hhcccCcccEEE
Q 036079 547 PRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQILPES-INSLYNLHTILLENCHRLKKLCK-DMGNLIKLHHLR 623 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 623 (1399)
++|++|++++|.++.+| ..|.++++|++|+|++|.|+.+|.. +..+++|++|++++|. +..+|. .+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEE
Confidence 68999999999999886 4578999999999999999988764 6899999999999964 555555 478999999999
Q ss_pred cCCCcccccCCcc-cccccccCccceEEeccCC
Q 036079 624 NSNVDSLEEMPKG-FGKLTCLLTLCTFVVGKDG 655 (1399)
Q Consensus 624 l~~n~~~~~lp~~-~~~L~~L~~L~l~~~~~~~ 655 (1399)
+++|. +..+|.. +..+++|++|++.+|.+..
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99998 6677765 6889999999998776654
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=4.8e-09 Score=120.05 Aligned_cols=185 Identities=16% Similarity=0.172 Sum_probs=114.7
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCC-ceEEEEeCCCCCHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 227 (1399)
..++||+..++.+.+++... ..+.+.|+|++|+||||+|+.+++... ...+. ..++++.+....... .+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 46999999999999998642 223389999999999999999987321 11111 233443333222211 1112
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHh-cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhh-hhc-cCC
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGV-TVN-MGA 304 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~-~~~-~~~ 304 (1399)
++.+.... ..+ .+++.+||+||++......++.+...+.....++++|+||+...- ... ...
T Consensus 93 ~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 93 IKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 21111000 011 356899999999886666666666555555567788888876431 111 122
Q ss_pred CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHH-HHHHH
Q 036079 305 DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLA-AKTLG 360 (1399)
Q Consensus 305 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~~ 360 (1399)
...+++.+++.++..+++...+.... .. -.++.+..|++.++|.|.. +..+.
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~-~~---~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLED-VK---YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHT-CC---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23699999999999999988763211 11 1246678899999999954 44443
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=4.5e-09 Score=120.21 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=75.0
Q ss_pred ccCceEEeeccCCcccccccc-cccccccccccccccccccCC-cccCCCCCceEeeccCCCccccCCC-CCCCCCcc-E
Q 036079 1171 QALKCLRVRFCSKLESFAESL-DNTSLEEITISWLENLKILPG-GLHNLHHLQEIRIEQCPNLESFPEG-GLPYAKLT-K 1246 (1399)
Q Consensus 1171 ~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~-~ 1246 (1399)
.++..+.+.+.-....+.... .+++|+++++++|. ++.+|. .|.+|++|++|++.++ ++.++.. +..+++|+ .
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEE
Confidence 445555555542222221111 36788888888764 555554 4788888888888874 7777764 44577788 8
Q ss_pred EEecCCcCcccCc-cccCCCCCccEEEecCCCCCcccccccccccccCcccccc
Q 036079 1247 LEILDCENLKALP-NCMHNLTSLLCLEIGLCPRLICKPLFEWGLNRFTSLKRLE 1299 (1399)
Q Consensus 1247 L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~l~~l~~L~~L~ 1299 (1399)
+++.+ .++.++ ..|.+|++|+.|+++.+ .+..++ ...+.++++|+.++
T Consensus 279 l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~--~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 279 LELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLG--DELFGNGVPSKLIY 327 (329)
T ss_dssp EEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEEC--TTTTCTTCCCCEEE
T ss_pred EEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccc--hhhhcCCcchhhhc
Confidence 88877 455554 46788888888888653 344443 23455555555544
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=1.2e-09 Score=125.10 Aligned_cols=27 Identities=15% Similarity=-0.034 Sum_probs=17.0
Q ss_pred ccCCCCCccceEEEeCCCCccccCCCC
Q 036079 870 VTIKYLPALSGLQINGCKGVVFSSPIV 896 (1399)
Q Consensus 870 ~~~~~l~~L~~L~l~~n~~~~~~~~~~ 896 (1399)
.+|..+++|+.|++.+|....+....|
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF 144 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEAL 144 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSS
T ss_pred HHhhcCcccceEEcCCCCccccchhhh
Confidence 346667777777777776555554444
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.87 E-value=1.7e-09 Score=110.09 Aligned_cols=99 Identities=21% Similarity=0.269 Sum_probs=83.3
Q ss_pred HHhhhcCCCCcccEEEecCCccccc-CccccCccccceeeccCccccccchh-hhccccccEEEcCCccccccchhh-hc
Q 036079 538 SVLQMLLNLPRLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQILPES-INSLYNLHTILLENCHRLKKLCKD-MG 614 (1399)
Q Consensus 538 ~~~~~~~~l~~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~ 614 (1399)
.+|..+. ++|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+|.. |.++++|++|+|++| .+..+|.. |.
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 102 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFD 102 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhc
Confidence 4455443 7999999999999988 67899999999999999999999876 589999999999996 56677765 99
Q ss_pred ccCcccEEEcCCCcccccCCcccccc
Q 036079 615 NLIKLHHLRNSNVDSLEEMPKGFGKL 640 (1399)
Q Consensus 615 ~L~~L~~L~l~~n~~~~~lp~~~~~L 640 (1399)
.+++|++|++++|. +...|..+..+
T Consensus 103 ~l~~L~~L~L~~N~-~~c~~~~~~~l 127 (174)
T 2r9u_A 103 NLKSLTHIYLYNNP-WDCECRDIMYL 127 (174)
T ss_dssp TCTTCSEEECCSSC-BCTTBGGGHHH
T ss_pred cccCCCEEEeCCCC-cccccccHHHH
Confidence 99999999999998 66666544444
No 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.86 E-value=7.8e-09 Score=106.08 Aligned_cols=96 Identities=25% Similarity=0.339 Sum_probs=69.9
Q ss_pred cccEEEecCCcccccCccccCccccceeeccCccccccch-hhhccccccEEEcCCccccccchh-hhcccCcccEEEcC
Q 036079 548 RLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPE-SINSLYNLHTILLENCHRLKKLCK-DMGNLIKLHHLRNS 625 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~ 625 (1399)
..+.++++++.+..+|..+. ++|++|++++|+++.+|. .+..+++|++|++++|. +..+|. .+..+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECC
Confidence 35788889999988886654 689999999999997765 46888999999999864 555554 46888899999998
Q ss_pred CCcccccCCcc-cccccccCccc
Q 036079 626 NVDSLEEMPKG-FGKLTCLLTLC 647 (1399)
Q Consensus 626 ~n~~~~~lp~~-~~~L~~L~~L~ 647 (1399)
+|. +..+|.. ++.+++|++|+
T Consensus 85 ~N~-l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 85 ENK-LQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCC-ccccCHHHhhCCcccCEEE
Confidence 887 4455432 34444444433
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.81 E-value=1.2e-10 Score=122.08 Aligned_cols=104 Identities=23% Similarity=0.244 Sum_probs=88.2
Q ss_pred cccEEEecCC--cccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcC
Q 036079 548 RLRVFSLHGY--CVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNS 625 (1399)
Q Consensus 548 ~Lr~L~L~~n--~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 625 (1399)
.|+...+.++ .++.+|..|+.+++|++|+|++|.++.+| .+..+++|++|++++| .+..+|..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence 3455555543 45666779999999999999999999999 8999999999999996 577899989999999999999
Q ss_pred CCcccccCCcccccccccCccceEEeccCC
Q 036079 626 NVDSLEEMPKGFGKLTCLLTLCTFVVGKDG 655 (1399)
Q Consensus 626 ~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~ 655 (1399)
+|. +..+| .++.+++|++|++.+|.+..
T Consensus 102 ~N~-l~~l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 102 YNQ-IASLS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp EEE-CCCHH-HHHHHHHSSEEEESEEECCC
T ss_pred CCc-CCcCC-ccccCCCCCEEECCCCcCCc
Confidence 998 66777 68899999999998887653
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=4.4e-09 Score=106.75 Aligned_cols=92 Identities=24% Similarity=0.336 Sum_probs=78.0
Q ss_pred HhhhcCCCCcccEEEecCCccccc-CccccCccccceeeccCccccccchh-hhccccccEEEcCCccccccchh-hhcc
Q 036079 539 VLQMLLNLPRLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQILPES-INSLYNLHTILLENCHRLKKLCK-DMGN 615 (1399)
Q Consensus 539 ~~~~~~~l~~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~ 615 (1399)
+|..+ .++|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. |..+++|++|+|++| .+..+|. .|..
T Consensus 24 ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~ 100 (170)
T 3g39_A 24 VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDN 100 (170)
T ss_dssp CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcC
Confidence 44444 37899999999999998 67899999999999999999988765 689999999999996 5666665 5899
Q ss_pred cCcccEEEcCCCcccccCC
Q 036079 616 LIKLHHLRNSNVDSLEEMP 634 (1399)
Q Consensus 616 L~~L~~L~l~~n~~~~~lp 634 (1399)
+++|++|++++|. +...+
T Consensus 101 l~~L~~L~L~~N~-~~c~c 118 (170)
T 3g39_A 101 LKSLTHIWLLNNP-WDCAC 118 (170)
T ss_dssp CTTCCEEECCSSC-BCTTB
T ss_pred CCCCCEEEeCCCC-CCCCc
Confidence 9999999999998 44433
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.77 E-value=3.3e-08 Score=108.91 Aligned_cols=173 Identities=10% Similarity=0.011 Sum_probs=107.3
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhc---cC--CceEEEEeCCCCCHHHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR---HF--EIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~---~f--~~~~wv~~~~~~~~~~~~ 224 (1399)
.+.|||++++++...|...- .++..+.+.|+|++|+|||++|+.+++...... .. -.++++++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 48999999999998887542 234667889999999999999999997432211 11 135677877888889999
Q ss_pred HHHHHhccCCCCCCcccHHHHHHHHHHH--hcCCeEEEEEcccCccChhhHhhhcccCCCC-CCCc--EEEEecCChh--
Q 036079 225 KSILNSVASDQCTDKDDLNLLQEKLKKQ--LSGKKFLLVLDDVWNESYNYWSILSCPFEAV-APGS--KIVVTTRNLG-- 297 (1399)
Q Consensus 225 ~~il~~l~~~~~~~~~~~~~~~~~l~~~--l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~-~~~s--~iivTtr~~~-- 297 (1399)
..|++++.+.........+.+...+... -++++++||||+++... ..+.+...+.+. ...+ .||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999665321222333333333322 24678999999997653 122222222110 1222 2333343321
Q ss_pred ---hh----hccCCCCceecCCCChhhHHHHHHHhhc
Q 036079 298 ---VT----VNMGADPAYQLKELSNDDCLCVLTQISL 327 (1399)
Q Consensus 298 ---~~----~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 327 (1399)
+. ..+. ...+.+.|++.+|..+++.+++.
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 1221 13589999999999999988763
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=2.3e-08 Score=114.58 Aligned_cols=185 Identities=13% Similarity=0.088 Sum_probs=115.2
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccC-CceEEEEeCCCCCHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF-EIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 227 (1399)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+ ...+.++.+...... ..+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~~- 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGIN-VIRE- 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHH-TTHH-
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchH-HHHH-
Confidence 45999999999999998653 233489999999999999999997321 1111 112333322211100 0000
Q ss_pred HHhccCCCCCCcccHHHHHHHHHH---HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhh-hhcc-
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKK---QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGV-TVNM- 302 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~---~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~-~~~~- 302 (1399)
....... ...+++.+||+||++......+..+...+.....++++|+||....- ...+
T Consensus 96 -----------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 96 -----------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp -----------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -----------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 0011111 11267889999999887666666666655555567788888876431 1110
Q ss_pred CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 303 GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 303 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
.....+.+.+++.++..+++...+..... .-.++..+.|++.++|.|..+..+...+
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 11236899999999999999887643221 1225677889999999998765554433
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=2e-08 Score=116.13 Aligned_cols=107 Identities=16% Similarity=0.076 Sum_probs=70.2
Q ss_pred EEEecCC-cccccCccccCccccceeeccC-ccccccc-hhhhccccccEEEcCCccccccchhhhcccCcccEEEcCCC
Q 036079 551 VFSLHGY-CVSKLPNEIGNLKHLRFLNLSG-TEIQILP-ESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNV 627 (1399)
Q Consensus 551 ~L~L~~n-~i~~lp~~~~~l~~L~~L~Ls~-n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n 627 (1399)
.++++++ .++.+|. |..+++|++|+|++ |.|+.+| ..|+.|++|++|+|++|......|..|.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3466766 6777777 77777777777775 7777665 45777777777777776443444445777777777777777
Q ss_pred cccccCCcc-cccccccCccceEEeccCCCCChh
Q 036079 628 DSLEEMPKG-FGKLTCLLTLCTFVVGKDGGSGLR 660 (1399)
Q Consensus 628 ~~~~~lp~~-~~~L~~L~~L~l~~~~~~~~~~~~ 660 (1399)
. +..+|.. +..+. |+.|++.+|.+.....+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~ 122 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLHCSCALR 122 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCccCCCccH
Confidence 7 5566654 33333 777777666655443333
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.63 E-value=2e-07 Score=108.95 Aligned_cols=197 Identities=19% Similarity=0.181 Sum_probs=115.1
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.+++||+..++.+..++... ...+.+.|+|++|+||||+|+.+++.......+. . ...........+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~-----~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~----~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---A----TPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT-----CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---S----SCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---C----CCCcccHHHHHHh
Confidence 35999999999999999643 2235789999999999999999986322111110 0 0000000111111
Q ss_pred Hh-------ccCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChh-hh
Q 036079 229 NS-------VASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG-VT 299 (1399)
Q Consensus 229 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~-~~ 299 (1399)
.. +............++.+.+... ..+++.+||+||++......+..+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 10 0000001122233332222111 135678999999987766666666555544455667777776432 11
Q ss_pred hc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHh
Q 036079 300 VN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGS 361 (1399)
Q Consensus 300 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 361 (1399)
.. ......+++.+++.++..+++.+.+.... . ...++.+..|++.++|.|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~---~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEH-I---AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-C---CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11 11224689999999999999987653211 1 11246678899999999988776543
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.62 E-value=1.8e-07 Score=106.57 Aligned_cols=182 Identities=13% Similarity=0.101 Sum_probs=113.9
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCC-ceEEEEeCCCCCHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 227 (1399)
.+++|++..++.+.+++.. +..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER------KNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT------TCCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhC------CCCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 4599999999999888853 2333489999999999999999987321 11111 1233333322110
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHH--h-cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChh-hhhc-c
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQ--L-SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG-VTVN-M 302 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~-~~~~-~ 302 (1399)
....+....+... + .+++.++|+|+++.......+.+...+.....+.++|+||.... +... .
T Consensus 83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 0111111111111 1 25688999999988766666777766665556778888876543 1111 1
Q ss_pred CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHH
Q 036079 303 GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLG 360 (1399)
Q Consensus 303 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 360 (1399)
.....+++.+++.++..+++...+.... .. -.++....|++.++|.+..+....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~-~~---i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEG-VK---ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTC-CC---BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1223689999999999999988764322 11 225667889999999997655443
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.45 E-value=1.3e-05 Score=93.24 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=28.3
Q ss_pred cccCCCCCceEeeccCCCccccCCCC-CCCCCccEEEecCCcCcccCc-cccCCCCCccEEEecCC
Q 036079 1213 GLHNLHHLQEIRIEQCPNLESFPEGG-LPYAKLTKLEILDCENLKALP-NCMHNLTSLLCLEIGLC 1276 (1399)
Q Consensus 1213 ~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c 1276 (1399)
.+.+|++|+.+++.+ .+..++... ..+++|+.+.+.++ ++.++ ..|.++ +|+.+++.++
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred HhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 355555555555553 244444422 23455555555432 33332 245555 5555555553
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.42 E-value=1.3e-05 Score=93.25 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=80.9
Q ss_pred CCCccEEEEccCCCccccCC--ccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCC--CCCCCCC
Q 036079 982 LSSLTEMRIAHCTSLISFPE--AALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE--VSLPSRL 1057 (1399)
Q Consensus 982 l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~--~~~~~~L 1057 (1399)
+..++.+.+.+ .+..++. +.. .+|+.+.+..+ +..++...+.+ .+|+.+.+.+ .++.++. +..+++|
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~~-~~L~~i~l~~~--i~~I~~~aF~~--~~L~~i~lp~--~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFRN-SQIAKVVLNEG--LKSIGDMAFFN--STVQEIVFPS--TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTT-CCCSEEECCTT--CCEECTTTTTT--CCCCEEECCT--TCCEECSSTTTTCTTC
T ss_pred cCCccEEEECC--ccCEehHhhccc-CCccEEEeCCC--ccEECHHhcCC--CCceEEEeCC--CccEehHHHhhCcccC
Confidence 46777777765 3444442 334 37999998765 77777766654 4699998875 4666654 4556889
Q ss_pred cEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCcccccc--ccccCccceeeecc
Q 036079 1058 RTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHIAR--IQLAPSLKRLIINS 1113 (1399)
Q Consensus 1058 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~--~~~~~~L~~L~l~~ 1113 (1399)
+.+++.+ +.++.++...+. +.+|+.+.+.+ .++.++. +..+++|+.+++..
T Consensus 183 ~~l~l~~-n~l~~I~~~aF~--~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 183 KKADLSK-TKITKLPASTFV--YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CEEECTT-SCCSEECTTTTT--TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT
T ss_pred CeeecCC-CcceEechhhEe--ecccCEEEeCC--chheehhhHhhCCCCCCEEecCC
Confidence 9999987 678888877764 57888888874 3555553 56667777777654
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=4.1e-06 Score=98.24 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=30.9
Q ss_pred ccCCCCCceEeeccCCCccccCC-CCCCCCCccEEEecCCcCcccCcc-ccCCCCCccEEEecC
Q 036079 1214 LHNLHHLQEIRIEQCPNLESFPE-GGLPYAKLTKLEILDCENLKALPN-CMHNLTSLLCLEIGL 1275 (1399)
Q Consensus 1214 ~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~ 1275 (1399)
+.++++|+.++|.+ .++.+.. .+..+.+|+.+.+..+ ++.++. .|.+|++|+.+++..
T Consensus 316 F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 316 FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 55566666666643 2445543 2334556666666442 344433 466666666666643
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.41 E-value=3.3e-06 Score=96.70 Aligned_cols=177 Identities=18% Similarity=0.191 Sum_probs=105.9
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1399)
-..++|++..++++..++..... .....+.|.|+|++|+|||++|+.+++. .... .+.+++.....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~-------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEK-------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCS--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccc--------
Confidence 34699999999999998865321 1234456899999999999999999862 2222 22233221111
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCC------------------CCCcEE
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAV------------------APGSKI 289 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~------------------~~~s~i 289 (1399)
.......+.. ..+..+|++|+++.........+...+... .++..+
T Consensus 94 --------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 94 --------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp --------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred --------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 1111112211 245678899999776544444333222211 112456
Q ss_pred EEecCChh-----hhhccCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHH
Q 036079 290 VVTTRNLG-----VTVNMGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLG 360 (1399)
Q Consensus 290 ivTtr~~~-----~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 360 (1399)
|.||.... +...+ ...+.+.+++.++..+++.+.+.... ....++..+.|++.+.|.|-.+..+.
T Consensus 158 i~atn~~~~l~~~L~~R~--~~~i~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRF--GMQFRLEFYKDSELALILQKAALKLN----KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEESCGGGSCHHHHTTC--SEEEECCCCCHHHHHHHHHHHHHHTT----CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhc--CEEeeCCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 66665432 22221 24689999999999999988764322 11235677889999999996555443
No 166
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.40 E-value=3.8e-07 Score=99.11 Aligned_cols=175 Identities=15% Similarity=0.094 Sum_probs=100.1
Q ss_pred Cccccch---hhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHH
Q 036079 149 AKVYGRE---KDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 149 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1399)
..|+|++ ..++.+..+... +..+.+.|+|++|+||||+|+.+++. .......+.|+++..-.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 3577633 445556555532 23467899999999999999999873 3222334566665432110
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhh--HhhhcccCCCC-CCC-cEEEEecCChh----
Q 036079 226 SILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNY--WSILSCPFEAV-APG-SKIVVTTRNLG---- 297 (1399)
Q Consensus 226 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~--~~~l~~~~~~~-~~~-s~iivTtr~~~---- 297 (1399)
+. . .+ +.+ .++.+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -----~~-------~-------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 95 -----ST-------A-------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp -----CG-------G-------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred -----HH-------H-------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 00 0 00 011 356799999997653322 22232222111 112 24777776322
Q ss_pred -----hhhccCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHh
Q 036079 298 -----VTVNMGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGS 361 (1399)
Q Consensus 298 -----~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 361 (1399)
+...+.....+.+.+++.++..+++...+.... .. -.+++...|++.++|.+-.+..+..
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~---~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQ---LPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CC---CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 111111124689999999999999988764221 11 1256778899999999877665543
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=2e-06 Score=99.52 Aligned_cols=196 Identities=14% Similarity=0.086 Sum_probs=112.9
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCC-ceEEEEeCCCCCHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 227 (1399)
..++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++.......+. .++.++.+.......+ .+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 46999999999999998542 223389999999999999999987422111121 1233333332222222 222
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChh-hhhcc-CCC
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG-VTVNM-GAD 305 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~-~~~~~-~~~ 305 (1399)
+..+........... .....-.+++-+|++|+++.........+...+.......++|++|.... +...+ ...
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 221111100000000 00111124567999999987665555555555544445667777775432 11110 111
Q ss_pred CceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHH
Q 036079 306 PAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLG 360 (1399)
Q Consensus 306 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 360 (1399)
..+.+.+++.++..+.+...+.... .. -.+++.+.|++.++|.|-.+..+.
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~-~~---i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQEN-VK---CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTT-CC---CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhC-CC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3688999999999999988764322 11 125677899999999988654443
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.39 E-value=1.8e-05 Score=92.76 Aligned_cols=124 Identities=17% Similarity=0.219 Sum_probs=61.8
Q ss_pred hhhccCCCccEEEEccCCCccccCC--ccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCCCCCC
Q 036079 977 QALLTLSSLTEMRIAHCTSLISFPE--AALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLP 1054 (1399)
Q Consensus 977 ~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~ 1054 (1399)
.+|.++++|+.+.+.. .+..++. +..+++|+.+++.++ +..++...+.+ +.+|+.+.+... +..+....+.
T Consensus 65 ~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~-c~~L~~i~~p~~--l~~i~~~aF~ 137 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSG-CYALKSILLPLM--LKSIGVEAFK 137 (394)
T ss_dssp TTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTT-CTTCCCCCCCTT--CCEECTTTTT
T ss_pred HHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcc-cccchhhcccCc--eeeecceeee
Confidence 3566777777777764 3444543 455677777777643 45555544432 666666655432 3333322211
Q ss_pred -CCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCcccccc--ccccCccceeeec
Q 036079 1055 -SRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHIAR--IQLAPSLKRLIIN 1112 (1399)
Q Consensus 1055 -~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~--~~~~~~L~~L~l~ 1112 (1399)
..+....+ ...+..+....+ ..|++|+.+.+.++ ++.++. +..+++|+.+.+.
T Consensus 138 ~~~~~~~~~--~~~~~~i~~~aF-~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 138 GCDFKEITI--PEGVTVIGDEAF-ATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp TCCCSEEEC--CTTCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccccc--Cccccccchhhh-cccCCCcEEecCCc--cceeccccccCCCCceEEEcC
Confidence 11111111 123333433333 45677777777542 233332 4555666666553
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.34 E-value=4.5e-07 Score=104.60 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=76.6
Q ss_pred HHhhhcCCCCcccEEEecC-CcccccC-ccccCccccceeeccCccccccc-hhhhccccccEEEcCCccccccchhhhc
Q 036079 538 SVLQMLLNLPRLRVFSLHG-YCVSKLP-NEIGNLKHLRFLNLSGTEIQILP-ESINSLYNLHTILLENCHRLKKLCKDMG 614 (1399)
Q Consensus 538 ~~~~~~~~l~~Lr~L~L~~-n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 614 (1399)
.+|. +..+++|+.|+|++ |.+..+| ..|++|++|++|+|++|+|+.+| ..|.+|++|++|+|++| .+..+|..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc
Confidence 4777 99999999999996 9999986 67999999999999999999775 47899999999999995 5667776544
Q ss_pred ccCcccEEEcCCCc
Q 036079 615 NLIKLHHLRNSNVD 628 (1399)
Q Consensus 615 ~L~~L~~L~l~~n~ 628 (1399)
....|++|++.+|.
T Consensus 101 ~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCCEEECCSSC
T ss_pred ccCCceEEEeeCCC
Confidence 43349999999998
No 170
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.33 E-value=5.1e-07 Score=94.23 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..++||+++++++.+++.. ...+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 4599999999999999854 23456889999999999999999873
No 171
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.24 E-value=1e-05 Score=94.00 Aligned_cols=198 Identities=14% Similarity=0.072 Sum_probs=107.7
Q ss_pred CCccccchhhHHHH---HHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeC----CCCCH
Q 036079 148 EAKVYGREKDKEAI---VELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS----EEFDV 220 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l---~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~----~~~~~ 220 (1399)
-..|||++..++.+ .+.+... ....+.+.|+|++|+|||++|+.+++.. .... ..+.+... .....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~----~~~~~~vLl~GppGtGKT~la~~la~~l--~~~~-~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREG----KIAGRAVLIAGQPGTGKTAIAMGMAQAL--GPDT-PFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTT----CCTTCEEEEEESTTSSHHHHHHHHHHHH--CSSC-CEEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcC----CCCCCEEEEECCCCCCHHHHHHHHHHHh--cccC-Ccccccchhhhhcccch
Confidence 34699999887764 4444332 2234689999999999999999999732 2111 11222211 12233
Q ss_pred HHHHHHHHHhccCCC-----------------------------CCCcccHHHHHHHHHHHh-----cCC----eEEEEE
Q 036079 221 FRISKSILNSVASDQ-----------------------------CTDKDDLNLLQEKLKKQL-----SGK----KFLLVL 262 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~-----------------------------~~~~~~~~~~~~~l~~~l-----~~k----~~LiVl 262 (1399)
.+.+.+.+....... ........++...+.+.. .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 444444433311100 000000112222222211 233 459999
Q ss_pred cccCccChhhHhhhcccCCCCCCCcEEEEecCC-----------------hhhhhccCCCCceecCCCChhhHHHHHHHh
Q 036079 263 DDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN-----------------LGVTVNMGADPAYQLKELSNDDCLCVLTQI 325 (1399)
Q Consensus 263 Ddv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~-----------------~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~ 325 (1399)
|+++.........+...+...... .++++|.. +.+..++ ..+.+.+++.++..+++...
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHH
Confidence 999887666666665555443333 34444431 1222222 34799999999999999977
Q ss_pred hcCCCCCCCChhhHHHHHHHHHHcC-CChHHHHHHH
Q 036079 326 SLGARDFSMHQSLKEVGEKIAMKCK-GLPLAAKTLG 360 (1399)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plal~~~~ 360 (1399)
+.... . .-.+++...|++.+. |.|-.+..+.
T Consensus 272 ~~~~~-~---~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 272 CEEED-V---EMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HHHTT-C---CBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHcC-C---CCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 64322 1 122567788888887 7776554443
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.24 E-value=4.2e-06 Score=98.50 Aligned_cols=181 Identities=17% Similarity=0.153 Sum_probs=105.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCC--ceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFE--IKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
...+.|+|++|+||||||+.+++. ....+. .++++++. +...++...+... .. ..+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~------~~----~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG------KL----NEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT------CH----HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc------cH----HHHHHHh
Confidence 567899999999999999999973 333332 23455432 3344444444321 11 1233334
Q ss_pred cCCeEEEEEcccCccCh--hhHhhhcccCCC-CCCCcEEEEecCCh---------hhhhccCCCCceecCCCChhhHHHH
Q 036079 254 SGKKFLLVLDDVWNESY--NYWSILSCPFEA-VAPGSKIVVTTRNL---------GVTVNMGADPAYQLKELSNDDCLCV 321 (1399)
Q Consensus 254 ~~k~~LiVlDdv~~~~~--~~~~~l~~~~~~-~~~~s~iivTtr~~---------~~~~~~~~~~~~~l~~l~~~~~~~l 321 (1399)
+.++-+||+||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+++++.++..++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 44678999999976432 222333332211 23567888888763 2222333335689999999999999
Q ss_pred HHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh------cCC-CChhHHHHHHhh
Q 036079 322 LTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL------RGK-DDPRDWEFVLNT 378 (1399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~~~-~~~~~w~~~l~~ 378 (1399)
+.+.+.... ...+ +++...|++.++|.+-.+.-+...+ .++ -+.+.+++++..
T Consensus 272 L~~~~~~~~-~~i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 272 ARKMLEIEH-GELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHHT-CCCC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 988764211 1112 3456788999999986554332211 222 145566666554
No 173
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.22 E-value=1.5e-05 Score=90.57 Aligned_cols=173 Identities=15% Similarity=0.048 Sum_probs=104.5
Q ss_pred chhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhc--------------------cCCceEEEE
Q 036079 154 REKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR--------------------HFEIKAWTC 213 (1399)
Q Consensus 154 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~--------------------~f~~~~wv~ 213 (1399)
.++..+.+...+... .-.+.+.++|++|+|||++|+.+++...... +++ ..++.
T Consensus 7 ~~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~ 80 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLA 80 (334)
T ss_dssp GHHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEEC
T ss_pred hHHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEe
Confidence 345566777777532 2346789999999999999999986321110 111 12222
Q ss_pred eCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHH----hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEE
Q 036079 214 VSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKI 289 (1399)
Q Consensus 214 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~i 289 (1399)
... .......+++.+.+... ..+++-++|+|+++.........+...+.....++.+
T Consensus 81 ~~~-------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~ 141 (334)
T 1a5t_A 81 PEK-------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWF 141 (334)
T ss_dssp CCT-------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEE
T ss_pred ccc-------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEE
Confidence 110 00112223332222221 1356789999999887666666666656555566777
Q ss_pred EEecCChh-hhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHH
Q 036079 290 VVTTRNLG-VTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLG 360 (1399)
Q Consensus 290 ivTtr~~~-~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 360 (1399)
|++|..+. +... ......+++.+++.++..+.+.+.. . . .++.+..+++.++|.|..+..+.
T Consensus 142 Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~--~---~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 142 FLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T--M---SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C--C---CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C--C---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 77776542 2111 1222468999999999999998775 1 1 14566789999999997665543
No 174
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.20 E-value=1.6e-07 Score=108.34 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=15.1
Q ss_pred cccceeeccCccccc--cchhhhccccccEEEcCCc
Q 036079 570 KHLRFLNLSGTEIQI--LPESINSLYNLHTILLENC 603 (1399)
Q Consensus 570 ~~L~~L~Ls~n~i~~--lp~~i~~L~~L~~L~L~~~ 603 (1399)
++|++|+|++|.|.. +..-...+.+|++|+|++|
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 355555555555441 1111223445555555554
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.19 E-value=1e-05 Score=94.95 Aligned_cols=178 Identities=20% Similarity=0.156 Sum_probs=101.4
Q ss_pred CccccchhhH---HHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHH
Q 036079 149 AKVYGREKDK---EAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRIS 224 (1399)
Q Consensus 149 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~ 224 (1399)
.++||.+..+ ..+...+... ..+.+.|+|++|+||||+|+.+++. .... ++.++... ...+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~-- 90 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKE-- 90 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHH--
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHH--
Confidence 4589998887 6777777542 3467899999999999999999973 2222 22222111 1111
Q ss_pred HHHHHhccCCCCCCcccHHHHHHHHH-HHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEE-ecCChhh--hh
Q 036079 225 KSILNSVASDQCTDKDDLNLLQEKLK-KQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVV-TTRNLGV--TV 300 (1399)
Q Consensus 225 ~~il~~l~~~~~~~~~~~~~~~~~l~-~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv-Ttr~~~~--~~ 300 (1399)
......... ....+++.+|++|+++.......+.+...+.. + ...+|. ||.+... ..
T Consensus 91 -----------------ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 91 -----------------IREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNS 151 (447)
T ss_dssp -----------------HHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCH
T ss_pred -----------------HHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCH
Confidence 111111111 11246789999999987655555555444433 2 233333 5555421 11
Q ss_pred c-cCCCCceecCCCChhhHHHHHHHhhcCCCCC---CCChhhHHHHHHHHHHcCCChHHHHHHH
Q 036079 301 N-MGADPAYQLKELSNDDCLCVLTQISLGARDF---SMHQSLKEVGEKIAMKCKGLPLAAKTLG 360 (1399)
Q Consensus 301 ~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~Plal~~~~ 360 (1399)
. ......+.+.+++.++..+++.+........ ....-.+++.+.|++.++|.+-.+..+.
T Consensus 152 aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 152 ALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 1222468899999999999998876431110 1112235677889999999886555443
No 176
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.16 E-value=2.3e-05 Score=86.34 Aligned_cols=171 Identities=15% Similarity=0.175 Sum_probs=93.5
Q ss_pred CccccchhhHHHHHHH-------HhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 149 AKVYGREKDKEAIVEL-------LLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~-------L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
..++|....++++... +... .....+.+.|+|++|+|||++|+.+++. .. +. .+.+..+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~-~~~i~~~~----- 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FP-FIKICSPD----- 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CS-EEEEECGG-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CC-EEEEeCHH-----
Confidence 3578887776666652 3211 2345678999999999999999999973 22 11 12222221
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCcc----------ChhhHhhhcccCC---CCCCCcE
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE----------SYNYWSILSCPFE---AVAPGSK 288 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~----------~~~~~~~l~~~~~---~~~~~s~ 288 (1399)
.+.+. . .......+...+......++.+||+|+++.. .....+.+...+. .......
T Consensus 100 --------~~~g~-~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 100 --------KMIGF-S-ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp --------GCTTC-C-HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred --------HhcCC-c-hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 11110 0 1111122333344444567899999998542 1111222222222 2233445
Q ss_pred EEEecCChhhhhc---cCC-CCceecCCCCh-hhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCC
Q 036079 289 IVVTTRNLGVTVN---MGA-DPAYQLKELSN-DDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKG 351 (1399)
Q Consensus 289 iivTtr~~~~~~~---~~~-~~~~~l~~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 351 (1399)
||.||........ ... ...+.+.+++. ++..+++.+.. .. ..+....|++.+.|
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~-----~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NF-----KDKERTTIAQQVKG 228 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CS-----CHHHHHHHHHHHTT
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CC-----CHHHHHHHHHHhcC
Confidence 6777777644332 111 23578899988 66666665532 11 14556788888887
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.15 E-value=1.7e-05 Score=87.15 Aligned_cols=187 Identities=13% Similarity=0.051 Sum_probs=98.9
Q ss_pred CccccchhhHHHHHHHHhccCcC------CCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLR------ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
.+++|.+..++++.+++...... +....+.+.|+|++|+|||++|+.+++. .... .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHh---
Confidence 45899998887776655321100 1134456889999999999999999873 2222 23343332111
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC------------hh---hHhhhcccCCC--CCC
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES------------YN---YWSILSCPFEA--VAP 285 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~------------~~---~~~~l~~~~~~--~~~ 285 (1399)
.. .......+...+.......+.+|++|+++... .. ....+...+.. ...
T Consensus 78 -------~~------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 78 -------VI------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------SS------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------hc------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 00 11112223333333444568999999997531 00 11112111111 123
Q ss_pred CcEEEEecCChhhhh-cc-C--C-CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChH-HHHHH
Q 036079 286 GSKIVVTTRNLGVTV-NM-G--A-DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPL-AAKTL 359 (1399)
Q Consensus 286 ~s~iivTtr~~~~~~-~~-~--~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 359 (1399)
+..||.||....... .. . . ...+.+.+.+.++..+++...+..... ..........+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 556676776543211 11 1 1 135778999999999999877643221 11222344778888888753 44444
No 178
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=5.6e-06 Score=95.62 Aligned_cols=195 Identities=12% Similarity=0.096 Sum_probs=105.0
Q ss_pred CccccchhhHHHHHHHH-hccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCc-ch-hc--cCCc---------------
Q 036079 149 AKVYGREKDKEAIVELL-LRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDD-RV-QR--HFEI--------------- 208 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~-~~-~~--~f~~--------------- 208 (1399)
.+++|++...+.+.+++ .. +.... +.|+|++|+||||+|+.++... .. .+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~-----~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP-----RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT-----TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhC-----CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45899999888888877 32 12233 8999999999999999887621 00 00 0010
Q ss_pred -----eEEEEeCCCC-CHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCC
Q 036079 209 -----KAWTCVSEEF-DVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEA 282 (1399)
Q Consensus 209 -----~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~ 282 (1399)
.+.+..+... ......+++++.+..... ..... .+. -+.+++-++|+|+++..+......+...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc-----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 0111111000 000011222222211100 00000 000 0134677999999988665555666555544
Q ss_pred CCCCcEEEEecCChh-hhhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhh-HHHHHHHHHHcCCChHHHHHH
Q 036079 283 VAPGSKIVVTTRNLG-VTVNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSL-KEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 283 ~~~~s~iivTtr~~~-~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Plal~~~ 359 (1399)
...+..+|++|.+.. +...+ .....+++.+++.++..+.+...+....- .-. ++.+..|++.++|.+-.+..+
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI----QLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----EECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC----CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 445677777776532 21111 12246899999999999999887632211 111 356688999999988665554
Q ss_pred H
Q 036079 360 G 360 (1399)
Q Consensus 360 ~ 360 (1399)
.
T Consensus 237 l 237 (354)
T 1sxj_E 237 L 237 (354)
T ss_dssp H
T ss_pred H
Confidence 4
No 179
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.14 E-value=8.4e-06 Score=92.66 Aligned_cols=174 Identities=18% Similarity=0.181 Sum_probs=102.1
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.+++|++..++.+.+++... ....++.+.|++|+|||++|+.+++. .. ..++.++.+.. . .+..+..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~-~~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-K-IDFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-C-HHHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-C-HHHHHHHH
Confidence 56999999999999999742 23467888999999999999999873 21 12334443321 1 11111111
Q ss_pred HhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC-hhhHhhhcccCCCCCCCcEEEEecCChh-----hhhcc
Q 036079 229 NSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES-YNYWSILSCPFEAVAPGSKIVVTTRNLG-----VTVNM 302 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~-~~~~~~l~~~~~~~~~~s~iivTtr~~~-----~~~~~ 302 (1399)
....... ...+++.+||+||++... ....+.+...+.....+.++|+||.... +...+
T Consensus 94 ~~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 94 TNFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 1110000 012478899999998765 4455555544443345667888877643 11222
Q ss_pred CCCCceecCCCChhhHHHH-------HHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHH
Q 036079 303 GADPAYQLKELSNDDCLCV-------LTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAA 356 (1399)
Q Consensus 303 ~~~~~~~l~~l~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 356 (1399)
..+++++.+.++-.++ +...+.... ...++ .++...|++.++|.+-.+
T Consensus 158 ---~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~-~~~~~--~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 158 ---RVITFGQPTDEDKIEMMKQMIRRLTEICKHEG-IAIAD--MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp ---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT-CCBSC--HHHHHHHHHHTCSCTTHH
T ss_pred ---cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCCCc--HHHHHHHHHhCCCCHHHH
Confidence 3689999998874333 222221111 11111 266778888898876543
No 180
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.13 E-value=1.5e-05 Score=88.76 Aligned_cols=186 Identities=17% Similarity=0.107 Sum_probs=102.1
Q ss_pred CCccccchhhHHHHHHHHhccCcC-------CCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLR-------ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDV 220 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1399)
-.+++|.+..++++.+++...-.. +-...+.+.|+|++|+|||++|+.+++. .... .+.+..+.-
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~--- 87 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSEL--- 87 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGG---
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHH---
Confidence 456999999999998887431000 0123456899999999999999999873 2221 122222111
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCcc-----------ChhhHhhh---cccCC--CCC
Q 036079 221 FRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE-----------SYNYWSIL---SCPFE--AVA 284 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~-----------~~~~~~~l---~~~~~--~~~ 284 (1399)
.... ...........+......++.+|++||++.. .......+ ...+. ...
T Consensus 88 -----------~~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 88 -----------VKKF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -----------CCCS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -----------HHhc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1110 1111222233333334457789999999542 11111111 11111 123
Q ss_pred CCcEEEEecCChhhhhc--c---CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCC-ChHHHHH
Q 036079 285 PGSKIVVTTRNLGVTVN--M---GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKG-LPLAAKT 358 (1399)
Q Consensus 285 ~~s~iivTtr~~~~~~~--~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~ 358 (1399)
.+..||.||........ . .-...+.+.+.+.++..+++...+.... .... .....+++.+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~----~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN-LAED----VNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC-BCTT----CCHHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC-CCCc----CCHHHHHHHcCCCCHHHHHH
Confidence 45677888875432211 1 1113588999999999999988764322 1111 123667777777 4544444
Q ss_pred H
Q 036079 359 L 359 (1399)
Q Consensus 359 ~ 359 (1399)
+
T Consensus 230 l 230 (285)
T 3h4m_A 230 I 230 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=7.8e-06 Score=98.76 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=108.1
Q ss_pred CCccccchhhHHHHHHHHhccCc-----------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC
Q 036079 148 EAKVYGREKDKEAIVELLLRDDL-----------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE 216 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 216 (1399)
-.+++|++..++++.+++..... .+.+..+.+.|+|++|+||||+|+.+++.. .+ .++.++++.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCC
Confidence 35699999999999999975210 011234789999999999999999999732 12 233444444
Q ss_pred CCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhh---HhhhcccCCCCCCCcEEEEec
Q 036079 217 EFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNY---WSILSCPFEAVAPGSKIVVTT 293 (1399)
Q Consensus 217 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~---~~~l~~~~~~~~~~s~iivTt 293 (1399)
..... .....+........ ...-.....+ .....+++.+||+|+++...... +..+...+.. .+..||+++
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~ 186 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMS-VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILIC 186 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCC-STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEE
T ss_pred cchHH-HHHHHHHHHhcccc-HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEE
Confidence 43332 23332222211100 0000000000 00123578899999997643211 2333222221 233455554
Q ss_pred CChh---hhhccCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC-hHHHHHHHh
Q 036079 294 RNLG---VTVNMGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL-PLAAKTLGS 361 (1399)
Q Consensus 294 r~~~---~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 361 (1399)
.+.. +.........+.+.+++.++..+++...+..... ... +++...|++.++|. +-|+..+..
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~---~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLD---PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCC---TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4322 2111122235899999999999998876643221 111 24567889999995 455555543
No 182
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=1.4e-05 Score=91.27 Aligned_cols=177 Identities=11% Similarity=0.147 Sum_probs=104.5
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCC-ceEEEEeCCCCCHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 227 (1399)
..++|.+..++.+..++... +.+.+.++|++|+||||+|+.++.... ...+. .+..++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc--------
Confidence 45789988899888888642 222389999999999999999987321 11111 111222221111
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHh------cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChh-hhh
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQL------SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG-VTV 300 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l------~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~-~~~ 300 (1399)
.+.+.+.+.... .+.+-++|+|+++.......+.+...+......+++|++|.... +..
T Consensus 90 --------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~ 155 (340)
T 1sxj_C 90 --------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTP 155 (340)
T ss_dssp --------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred --------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccch
Confidence 122222222211 23477899999977655555555554444445667777765432 111
Q ss_pred c-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHH
Q 036079 301 N-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKT 358 (1399)
Q Consensus 301 ~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 358 (1399)
. ......+++.+++.++..+.+.+.+.... .. -.++..+.|++.++|.+--+..
T Consensus 156 ~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~-~~---i~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 156 ALLSQCTRFRFQPLPQEAIERRIANVLVHEK-LK---LSPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHTTT-CC---BCHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHhhceeEeccCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1 11123588999999999888887653211 11 1245678899999998864433
No 183
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.08 E-value=5.3e-07 Score=103.95 Aligned_cols=106 Identities=13% Similarity=0.074 Sum_probs=72.8
Q ss_pred CCCcccEEEecCCccccc--CccccCccccceeeccCcccccc-chhh-----hccccccEEEcCCcccc----ccchhh
Q 036079 545 NLPRLRVFSLHGYCVSKL--PNEIGNLKHLRFLNLSGTEIQIL-PESI-----NSLYNLHTILLENCHRL----KKLCKD 612 (1399)
Q Consensus 545 ~l~~Lr~L~L~~n~i~~l--p~~~~~l~~L~~L~Ls~n~i~~l-p~~i-----~~L~~L~~L~L~~~~~l----~~lp~~ 612 (1399)
..++|+.|+|++|.++.. ..-...+++|++|+|++|.|+.. ...+ ...++|++|+|++|... ..++..
T Consensus 99 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 99 GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp CSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 347999999999998642 33344677899999999999743 2233 24678999999997532 235566
Q ss_pred hcccCcccEEEcCCCccccc-----CCcccccccccCccceEEe
Q 036079 613 MGNLIKLHHLRNSNVDSLEE-----MPKGFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 613 i~~L~~L~~L~l~~n~~~~~-----lp~~~~~L~~L~~L~l~~~ 651 (1399)
+..+++|++|++++|. +.. ++..+...++|++|++.+|
T Consensus 179 L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 7889999999999998 332 2233444555555555443
No 184
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=2.7e-06 Score=84.18 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=29.6
Q ss_pred CCCCcEEEecCCCCCcccchhhhhcC---CCCccEEeecCCCCccccc--cccccCccceeeeccccCcc
Q 036079 1054 PSRLRTIEIEGCYALKCLPEAWMENS---STSLESLNIYNCNSLTHIA--RIQLAPSLKRLIINSCHNLR 1118 (1399)
Q Consensus 1054 ~~~L~~L~l~~c~~l~~~~~~~~~~~---l~~L~~L~L~~c~~l~~~~--~~~~~~~L~~L~l~~c~~l~ 1118 (1399)
+++|++|+|++|..+++-....+... +++|++|+|++|+.+++.+ .+..+++|++|++++|+.++
T Consensus 84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 34444445555444444433333221 2345555555555554422 23444555555555555443
No 185
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.04 E-value=0.0002 Score=83.63 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=54.4
Q ss_pred hhhccCCCccEEEEccC--CCccccCC--ccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCC--
Q 036079 977 QALLTLSSLTEMRIAHC--TSLISFPE--AALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE-- 1050 (1399)
Q Consensus 977 ~~~~~l~~L~~L~l~~~--~~l~~~~~--~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~-- 1050 (1399)
.+|.++++|+.+.+..+ ..+..++. +..+.+|+.+.+..+ +..++...+.. +.+|+.+.+... +..++.
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~-c~~L~~i~lp~~--~~~I~~~~ 155 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHH-CEELDTVTIPEG--VTSVADGM 155 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTT-CTTCCEEECCTT--CCEECTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhh-hcccccccccce--eeeecccc
Confidence 45666777777777654 23444442 344556666555432 44444443332 666777766532 333333
Q ss_pred CCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecC
Q 036079 1051 VSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYN 1090 (1399)
Q Consensus 1051 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~ 1090 (1399)
+....+|+.+.+.. .++.+....+. ...|+.+.+..
T Consensus 156 F~~c~~L~~i~~~~--~~~~I~~~aF~--~~~l~~i~ip~ 191 (394)
T 4gt6_A 156 FSYCYSLHTVTLPD--SVTAIEERAFT--GTALTQIHIPA 191 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTT--TCCCSEEEECT
T ss_pred eecccccccccccc--eeeEecccccc--ccceeEEEECC
Confidence 23345666666654 35555544432 24566666653
No 186
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=3.1e-06 Score=83.73 Aligned_cols=94 Identities=18% Similarity=0.140 Sum_probs=60.9
Q ss_pred CCccEEEecCCcCcccCccccCCCCCccEEEecCCCCCcccccccccccccCcccccccccCCCCcccCCCCCCCccEEe
Q 036079 1242 AKLTKLEILDCENLKALPNCMHNLTSLLCLEIGLCPRLICKPLFEWGLNRFTSLKRLEICEGCPDLVSSPRFPASLTVLR 1321 (1399)
Q Consensus 1242 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~ 1321 (1399)
..|+.|++++|.....--..+..+++|++|+|++|..+++. ++..+..+.. .+++|++|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-----gL~~L~~~~~---------------~~~~L~~L~ 120 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-----CLERLSQLEN---------------LQKSMLEME 120 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-----HHHHHHTCHH---------------HHHHCCEEE
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-----HHHHHHhccc---------------ccCCCCEEE
Confidence 46788888887633322234578888888888888877642 2222222100 123578888
Q ss_pred cCCCCCcccccc-CCCCCCCCCeeeccCCCCCCcC
Q 036079 1322 ISSMPNLICLSS-IGENLTSLETLDLHFCPKLKYF 1355 (1399)
Q Consensus 1322 l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~ 1355 (1399)
+++|+++++-.- .+.++++|++|++++|++++..
T Consensus 121 Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 121 IISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp EESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred cCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 888888866321 2357899999999999988753
No 187
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.01 E-value=5.1e-05 Score=86.00 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=88.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLS 254 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 254 (1399)
....+.|+|++|+||||||+.+++... ..-..++++++ .+....+...+... ..+. +....+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~------~~~~~~~~~~~~~~------~~~~----~~~~~~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSA------DDFAQAMVEHLKKG------TINE----FRNMYK 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEH------HHHHHHHHHHHHHT------CHHH----HHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEH------HHHHHHHHHHHHcC------cHHH----HHHHhc
Confidence 345789999999999999999997321 11122445543 23333443333211 1111 122222
Q ss_pred CCeEEEEEcccCccCh--hhHhhhcccCCC-CCCCcEEEEecCChh---------hhhccCCCCceecCCCChhhHHHHH
Q 036079 255 GKKFLLVLDDVWNESY--NYWSILSCPFEA-VAPGSKIVVTTRNLG---------VTVNMGADPAYQLKELSNDDCLCVL 322 (1399)
Q Consensus 255 ~k~~LiVlDdv~~~~~--~~~~~l~~~~~~-~~~~s~iivTtr~~~---------~~~~~~~~~~~~l~~l~~~~~~~l~ 322 (1399)
++.+|++||++.... ...+.+...+.. ...+..||+||.... +...+.....+++++ +.++..+++
T Consensus 98 -~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 98 -SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 175 (324)
T ss_dssp -TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred -CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence 367999999976432 122233222211 124557888776421 222232234588999 999999999
Q ss_pred HHhhcCCCCCCCChhhHHHHHHHHHHcCCChHH
Q 036079 323 TQISLGARDFSMHQSLKEVGEKIAMKCKGLPLA 355 (1399)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 355 (1399)
...+.... ... .+++...|++.+ |..-.
T Consensus 176 ~~~~~~~~-~~l---~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 176 KEKLKEFN-LEL---RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHTT-CCC---CHHHHHHHHHHC-SSHHH
T ss_pred HHHHHhcC-CCC---CHHHHHHHHHhC-CCHHH
Confidence 88764322 112 246678888888 77643
No 188
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.98 E-value=2.7e-05 Score=87.77 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=91.1
Q ss_pred ccccchhhHHHHHHHHhccC---------cCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCH
Q 036079 150 KVYGREKDKEAIVELLLRDD---------LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDV 220 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1399)
.++|.+..++.+.+++.... .........+.|+|++|+|||++|+.+++...........-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 58999998888887664210 001234557899999999999999988874322222212223333311
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCcc---------ChhhHhhhcccCCCCCCCcEEEE
Q 036079 221 FRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE---------SYNYWSILSCPFEAVAPGSKIVV 291 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~---------~~~~~~~l~~~~~~~~~~s~iiv 291 (1399)
.+.... ...........+... +..+|++|+++.. .......+...+.....+..||.
T Consensus 109 ---------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 111110 111112222223222 3459999999743 33344455544444455677888
Q ss_pred ecCChh----------hhhccCCCCceecCCCChhhHHHHHHHhhc
Q 036079 292 TTRNLG----------VTVNMGADPAYQLKELSNDDCLCVLTQISL 327 (1399)
Q Consensus 292 Ttr~~~----------~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 327 (1399)
||.... +...+. ..+.+.+++.++..+++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIA--HHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEE--EEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCC--eEEEcCCcCHHHHHHHHHHHHH
Confidence 876432 222221 4689999999999999987764
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.98 E-value=6.2e-06 Score=85.18 Aligned_cols=45 Identities=24% Similarity=0.309 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..++||+.+++++.+++.. ...+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~------~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR------RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS------SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhC------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 4599999999999999854 23456789999999999999999873
No 190
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.96 E-value=6e-06 Score=80.75 Aligned_cols=114 Identities=13% Similarity=-0.011 Sum_probs=69.1
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILN 229 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 229 (1399)
+++|+...+.++.+.+.... ....-|.|+|.+|+|||++|+.+++... +.... .+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCC-EE-EECCCCCcc---------
Confidence 58999999999998886532 1223478999999999999999987421 11112 22 555433221
Q ss_pred hccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC
Q 036079 230 SVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN 295 (1399)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~ 295 (1399)
.. ....+... +.-.+++|+++.........+...+.......+||.||..
T Consensus 66 ----------~~---~~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQ---LNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SC---HHHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hh---hhcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 01 11111111 2347899999887766556665555444455677777764
No 191
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.94 E-value=0.00013 Score=82.23 Aligned_cols=187 Identities=14% Similarity=0.040 Sum_probs=104.3
Q ss_pred CCccccchhhHHHHHHHHhcc----C--cCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 148 EAKVYGREKDKEAIVELLLRD----D--LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
-.+++|.+..++++.+++... + .......+.+.|+|++|+|||++|+++++. ....| +.++. .
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~------~ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSS------S 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEH------H
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEch------H
Confidence 356999999999998887310 0 002223467899999999999999999973 22222 22222 1
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh-----------hhHhhhccc---CCCCCCCc
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY-----------NYWSILSCP---FEAVAPGS 287 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~-----------~~~~~l~~~---~~~~~~~s 287 (1399)
+ +..... ......+...+...-..++.+|++|+++.... .....+... +.....+.
T Consensus 86 ~----l~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 D----LVSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp H----HHTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred H----Hhhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 1 111111 11111222223333345778999999965321 001222111 11233455
Q ss_pred EEEEecCChhh-----hhccCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCC-ChHHHHHHHh
Q 036079 288 KIVVTTRNLGV-----TVNMGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKG-LPLAAKTLGS 361 (1399)
Q Consensus 288 ~iivTtr~~~~-----~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~ 361 (1399)
.||.||..+.. ...+ ...+.+...+.++-.+++...+..... ....+....|++++.| .+-.|..+..
T Consensus 156 ~vi~atn~~~~ld~al~~Rf--~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRF--ERRIYIPLPDLAARTTMFEINVGDTPC----VLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHTTCCC----CCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHccc--CeEEEeCCCCHHHHHHHHHHHhccCCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66667765332 1211 235778888999999999887643211 1124556788999988 4555555543
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.90 E-value=0.00014 Score=83.04 Aligned_cols=186 Identities=15% Similarity=0.071 Sum_probs=101.0
Q ss_pred CCccccchhhHHHHHHHHhcc----Cc--CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 148 EAKVYGREKDKEAIVELLLRD----DL--RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
-.+++|.+..++.+.+++... .. ......+-|.|+|++|+|||++|+++++. ....| +.++. .
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~------~ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSS------S 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEH------H
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeH------H
Confidence 346999999999998877321 00 01123356889999999999999999973 22221 22221 1
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChh-----------hHhhhcccC---CCCCCCc
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYN-----------YWSILSCPF---EAVAPGS 287 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~-----------~~~~l~~~~---~~~~~~s 287 (1399)
+ +..... ......+...+...-..++.+|+||+++..... ....+...+ .....+.
T Consensus 119 ~----l~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 D----LVSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp H----HHSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred H----Hhhhhc------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 1 111111 111112222222333467899999999753211 011221111 1123455
Q ss_pred EEEEecCChh-----hhhccCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCC-ChHHHHHHH
Q 036079 288 KIVVTTRNLG-----VTVNMGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKG-LPLAAKTLG 360 (1399)
Q Consensus 288 ~iivTtr~~~-----~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~ 360 (1399)
.||.||..+. +... -...+.+...+.++..+++......... .. .......|++++.| .+-.|..+.
T Consensus 189 ~vI~atn~~~~ld~al~rR--f~~~i~i~~P~~~~r~~il~~~l~~~~~-~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRR--FERRIYIPLPDLAARTTMFEINVGDTPS-VL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEESCGGGSCHHHHHT--CCEEEECCCCCHHHHHHHHHHHHTTSCB-CC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcc--cCEEEEeCCcCHHHHHHHHHHHHhhCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666666442 2221 1235778888999999999887633211 11 14556788999988 455555554
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.90 E-value=0.00031 Score=78.92 Aligned_cols=190 Identities=14% Similarity=0.038 Sum_probs=102.0
Q ss_pred CCccccchhhHHHHHHHHhc----cCc--CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 148 EAKVYGREKDKEAIVELLLR----DDL--RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
-.+++|.+..++.+.+.+.. .+. ......+.|.|+|++|+|||++|+++++... .. ..+.++.+.-.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~--- 83 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLV--- 83 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHH---
Confidence 34689999988888877631 110 0112346789999999999999999997320 11 12223332111
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh-------h----hHhhhccc---CCCCCCCc
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY-------N----YWSILSCP---FEAVAPGS 287 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~-------~----~~~~l~~~---~~~~~~~s 287 (1399)
... .......+...+...-..++.+|++|+++.... . ....+... +.....+.
T Consensus 84 -----------~~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 84 -----------SKW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp -----------CSS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred -----------hhh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 000 111122222223333346789999999965310 0 01111111 11123445
Q ss_pred EEEEecCChhhhh-c--cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC-hHHHHHHHh
Q 036079 288 KIVVTTRNLGVTV-N--MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL-PLAAKTLGS 361 (1399)
Q Consensus 288 ~iivTtr~~~~~~-~--~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 361 (1399)
.||.||..+.... . -.-...+.+...+.++..+++........ .. ........|++.+.|. +-.|..+..
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-~~---l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ-NS---LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC-BC---CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC-CC---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5665665432111 0 01123578888888988999988763221 11 1245668899999987 555655543
No 194
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=2.6e-05 Score=88.85 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=72.9
Q ss_pred cchhhccCCCccEEEEccCCCccccCCccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCC-------Cccc
Q 036079 975 LPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCK-------SLVS 1047 (1399)
Q Consensus 975 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~-------~l~~ 1047 (1399)
+...+..+|+|+.|++++|..+ .++.. ..++|++|++..|.........+....+|+|+.|+|+.+. .+..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 4455566677777777765322 22322 2567777777766532221112221236777777775321 0111
Q ss_pred c---CCCCCCCCCcEEEecCCCCCcccchhhh-hcCCCCccEEeecCCCCccccc------cccccCccceeeecccc
Q 036079 1048 F---PEVSLPSRLRTIEIEGCYALKCLPEAWM-ENSSTSLESLNIYNCNSLTHIA------RIQLAPSLKRLIINSCH 1115 (1399)
Q Consensus 1048 ~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~l~~L~~L~L~~c~~l~~~~------~~~~~~~L~~L~l~~c~ 1115 (1399)
+ .....+++|++|++++|......+.... ...+++|++|+|+.| .+++.. .+..+++|+.|++++|.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 1 1112357888888887543222222211 134678888888764 444421 12456788888887763
No 195
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.00081 Score=78.49 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=55.7
Q ss_pred hhhccCCCccEEEEccCCCccccC--CccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCCCCC-
Q 036079 977 QALLTLSSLTEMRIAHCTSLISFP--EAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSL- 1053 (1399)
Q Consensus 977 ~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~- 1053 (1399)
..|..+.+|+.+.+..+ +..++ .+..+.+|+.+.+... +..++...+.. +.+|+.+.+..+ ++.+....+
T Consensus 108 ~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~-c~~L~~i~~~~~--~~~I~~~aF~ 180 (394)
T 4gt6_A 108 QAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSY-CYSLHTVTLPDS--VTAIEERAFT 180 (394)
T ss_dssp TTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CTTCCEEECCTT--CCEECTTTTT
T ss_pred hhchhcccceeeccCCc--cceehhhhhhhhcccccccccce--eeeecccceec-ccccccccccce--eeEecccccc
Confidence 34666667766655542 33333 3455677777777543 44454443332 677777777642 444443222
Q ss_pred CCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecC
Q 036079 1054 PSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYN 1090 (1399)
Q Consensus 1054 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~ 1090 (1399)
..+|+.+.+.. .++.+....+ ..+.++.......
T Consensus 181 ~~~l~~i~ip~--~~~~i~~~af-~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 181 GTALTQIHIPA--KVTRIGTNAF-SECFALSTITSDS 214 (394)
T ss_dssp TCCCSEEEECT--TCCEECTTTT-TTCTTCCEEEECC
T ss_pred ccceeEEEECC--cccccccchh-hhccccceecccc
Confidence 25677777754 3344433333 3456666665543
No 196
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.84 E-value=0.00022 Score=81.57 Aligned_cols=188 Identities=11% Similarity=0.030 Sum_probs=102.1
Q ss_pred CccccchhhHHHHHHHHhcc----Cc--CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 149 AKVYGREKDKEAIVELLLRD----DL--RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
.+++|.+..++++.+++... +. ......+.|.|+|++|+|||++|+++++. .... .+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 46899999999998887421 00 00124567899999999999999999873 2211 23344332111
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC-----------hhhHhhhcccCC----CCCCCc
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES-----------YNYWSILSCPFE----AVAPGS 287 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~-----------~~~~~~l~~~~~----~~~~~s 287 (1399)
.. ...........+...-..++.+|+||+++... ......+...+. ....+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 01111112222222233577899999994321 011112221111 112344
Q ss_pred EEEEecCChh-hhhcc--CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCC-ChHHHHHHHh
Q 036079 288 KIVVTTRNLG-VTVNM--GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKG-LPLAAKTLGS 361 (1399)
Q Consensus 288 ~iivTtr~~~-~~~~~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~ 361 (1399)
.||.||.... +...+ .-...+.+...+.++..+++...+.... .. -.++....|++.+.| .+-.+..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~---l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ-CC---LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-BC---CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-CC---ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5665665432 11111 1113577888889998888887663221 11 124567889999998 5666666544
No 197
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.80 E-value=6.3e-05 Score=83.23 Aligned_cols=149 Identities=9% Similarity=-0.006 Sum_probs=91.6
Q ss_pred cchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcc-hhccCCceEEEEeCC-CCCHHHHHHHHHHh
Q 036079 153 GREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDR-VQRHFEIKAWTCVSE-EFDVFRISKSILNS 230 (1399)
Q Consensus 153 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~il~~ 230 (1399)
|-++.++.+...+... +.+...++|++|+||||+|+.+++... .........+++.+. ...+.++ +++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHH
Confidence 3445566777777532 267899999999999999999986310 111122334444332 2222222 223333
Q ss_pred ccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhhhccCCCCcee
Q 036079 231 VASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVTVNMGADPAYQ 309 (1399)
Q Consensus 231 l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~~~~~~~~~~~ 309 (1399)
+...+ ..+++-++|+|+++.......+.+...+......+.+|++|.++ .+...+... .++
T Consensus 74 ~~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 74 LNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HTSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred Hhhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 22111 12467799999998877777777776666555677777776543 333333333 799
Q ss_pred cCCCChhhHHHHHHHhh
Q 036079 310 LKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 310 l~~l~~~~~~~l~~~~~ 326 (1399)
+.++++++..+.+.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998875
No 198
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.78 E-value=0.0026 Score=73.75 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=28.6
Q ss_pred hhhccCCCccEEEEccCCCccccCC--ccCCCcccEEEccCCCccccCccccccCccCCcceEEecC
Q 036079 977 QALLTLSSLTEMRIAHCTSLISFPE--AALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRY 1041 (1399)
Q Consensus 977 ~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~ 1041 (1399)
..|.++.+|+.+.+..+ +..++. +..+ +|+.+.+..+ +..++...+. ..+|+.+.+..
T Consensus 63 ~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~--~~~L~~i~lp~ 122 (379)
T 4h09_A 63 ANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQ--GTDLDDFEFPG 122 (379)
T ss_dssp TTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTT--TCCCSEEECCT
T ss_pred HHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce--eeEeccceec--cCCcccccCCC
Confidence 35666677777777542 344442 2222 4555555432 4444444443 23566666543
No 199
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.77 E-value=1.5e-05 Score=85.67 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=55.9
Q ss_pred CCCCcccEEEecCCccccc---CccccCccccceeeccCccccccchhhhccc--cccEEEcCCccccccch-------h
Q 036079 544 LNLPRLRVFSLHGYCVSKL---PNEIGNLKHLRFLNLSGTEIQILPESINSLY--NLHTILLENCHRLKKLC-------K 611 (1399)
Q Consensus 544 ~~l~~Lr~L~L~~n~i~~l---p~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp-------~ 611 (1399)
.++++|+.|+|++|.++.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 5677888888888888765 35567788888888888888866 3345555 78888888876554443 2
Q ss_pred hhcccCcccEEE
Q 036079 612 DMGNLIKLHHLR 623 (1399)
Q Consensus 612 ~i~~L~~L~~L~ 623 (1399)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356777777776
No 200
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.77 E-value=0.0028 Score=73.51 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=57.0
Q ss_pred hhccCCCccEEEEccCCCccccCC--ccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCCCCC-C
Q 036079 978 ALLTLSSLTEMRIAHCTSLISFPE--AALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSL-P 1054 (1399)
Q Consensus 978 ~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~-~ 1054 (1399)
++....+|+.+.+.. .++.++. +..+.+|+.+.+..+ ++.++...+.+ + +|+.+.+.. .++.++...+ .
T Consensus 41 ~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~-c-~l~~i~~~~--~l~~I~~~aF~~ 112 (379)
T 4h09_A 41 WYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFAD-T-KLQSYTGME--RVKKFGDYVFQG 112 (379)
T ss_dssp TGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTT-C-CCCEEEECT--TCCEECTTTTTT
T ss_pred ccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcC-C-CCceEECCc--eeeEeccceecc
Confidence 345566788887765 4556653 556788888888643 66676665553 3 577666653 2455544222 2
Q ss_pred CCCcEEEecCCCCCcccchhhhhcCCCCccEEeec
Q 036079 1055 SRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIY 1089 (1399)
Q Consensus 1055 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~ 1089 (1399)
.+|+.+.+.. .++.+....+. . .+|+.+.+-
T Consensus 113 ~~L~~i~lp~--~~~~i~~~~F~-~-~~l~~~~~~ 143 (379)
T 4h09_A 113 TDLDDFEFPG--ATTEIGNYIFY-N-SSVKRIVIP 143 (379)
T ss_dssp CCCSEEECCT--TCCEECTTTTT-T-CCCCEEEEC
T ss_pred CCcccccCCC--ccccccccccc-c-ceeeeeecc
Confidence 4677777754 34444444432 1 245555444
No 201
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.76 E-value=6.5e-05 Score=85.52 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=36.3
Q ss_pred cccCCcCcEEEeecCCCCCCCcc-ccccccEEEEeecCCCCccchhhc--cCCCccEEEEcc
Q 036079 934 LQDVRSLNRLQISRCPQLLSLPE-LQCRLRFLELSYCEGLTRLPQALL--TLSSLTEMRIAH 992 (1399)
Q Consensus 934 ~~~l~~L~~L~l~~~~~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~--~l~~L~~L~l~~ 992 (1399)
+..+|+|+.|.+++|... .++. ..++|++|++..|.+.......+. .+|+|+.|+|+.
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HhcCCCCcEEEEeCCCCc-eeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 566788888888877322 2222 346788888887765443333333 577888887753
No 202
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.76 E-value=2.9e-05 Score=79.38 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=64.6
Q ss_pred chhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccC
Q 036079 154 REKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVAS 233 (1399)
Q Consensus 154 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 233 (1399)
++..++.+.+++.... ....+.++|+|++|+||||||+.++........+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 3444555555554322 1234689999999999999999999743212222 233433 44455554444432
Q ss_pred CCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHh--hhcccCCCC-CCCcEEEEecCC
Q 036079 234 DQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWS--ILSCPFEAV-APGSKIVVTTRN 295 (1399)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~--~l~~~~~~~-~~~s~iivTtr~ 295 (1399)
... . ...+.+ . +.-++||||++....+.|. .+...+... ..|..||+||..
T Consensus 89 ~~~---~---~~~~~~----~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKD---T---KFLKTV----L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCC---S---HHHHHH----H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chH---H---HHHHHh----c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 221 1 122222 1 4568999999743222332 222222111 246778888874
No 203
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.76 E-value=0.0004 Score=81.81 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=101.9
Q ss_pred CCccccchhhHHHHHHHHhcc----Cc--CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 148 EAKVYGREKDKEAIVELLLRD----DL--RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
-.+++|.+..++.+.+++... +. ......+.|.|+|++|+|||++|+++++.. ...-++.++..
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~---- 202 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSS---- 202 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHH----
Confidence 356999999999988877310 00 011234678999999999999999999732 11223333322
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh-----------hhHhhhcccCCC---CCCCc
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY-----------NYWSILSCPFEA---VAPGS 287 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~-----------~~~~~l~~~~~~---~~~~s 287 (1399)
++ .....+. .......+ +...-..++.+|+||+++.... .....+...+.. ...+.
T Consensus 203 ~l----~~~~~g~---~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 203 DL----VSKWLGE---SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ----------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred HH----Hhhhcch---HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 11 1111111 11122222 2222235788999999975310 111222222221 23456
Q ss_pred EEEEecCChhhhhc--c-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC-hHHHHHHHh
Q 036079 288 KIVVTTRNLGVTVN--M-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL-PLAAKTLGS 361 (1399)
Q Consensus 288 ~iivTtr~~~~~~~--~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 361 (1399)
.||.||..+..... . .-...+.+...+.++..+++......... .........|++.+.|. +-.|..+..
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----SLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----ECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 67767765432111 1 11135778888888888888877632211 11245567899999984 555555543
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.75 E-value=0.00036 Score=79.05 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
..++|.+..++.+...+..... .+.....+.|+|++|+||||||+.++.. ....|. ... +....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~s-g~~~~--------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTS-GPVLV--------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEE-TTTCC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEe-chHhc---------
Confidence 4588988888887776653210 1223467899999999999999999973 221110 111 10000
Q ss_pred HhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCC--------C----------CCcEEE
Q 036079 229 NSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAV--------A----------PGSKIV 290 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~--------~----------~~s~ii 290 (1399)
.. .++...+ ..+ .++.++++|+++.......+.+...+... + ....++
T Consensus 89 ---------~~---~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 89 ---------KQ---GDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ---------SH---HHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ---------CH---HHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 01 1111111 112 23457778888654332223221111000 0 011222
Q ss_pred -EecCChhhhhccCC--CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 291 -VTTRNLGVTVNMGA--DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 291 -vTtr~~~~~~~~~~--~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
.|++...+...... ...+.+++.+.++..+++.+.+.... . ...++.+..|+++++|.|-.+..+
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~---~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-V---EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-C---CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-C---CcCHHHHHHHHHhcCCChHHHHHH
Confidence 34443322111111 12478999999999999988763211 1 123567899999999999655433
No 205
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.75 E-value=6.8e-05 Score=89.07 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=78.6
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccC------Cc-eEEEEeCCCCCHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF------EI-KAWTCVSEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f------~~-~~wv~~~~~~~~~ 221 (1399)
+.+|||+.+++++.+.+... ...-+.|+|++|+|||++|+.++.. ....+ .. .+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 35999999999999999653 2235679999999999999999873 21111 11 1222222
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhhhc
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVTVN 301 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~~ 301 (1399)
....+. ...... ..+...-..++.++++|. ..+....+...+. ....++|.+|........
T Consensus 246 -------~~~~g~---~e~~~~---~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 -------TKYRGE---FEDRLK---KVMDEIRQAGNIILFIDA----AIDASNILKPSLA--RGELQCIGATTLDEYRKY 306 (468)
T ss_dssp -----------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHH
T ss_pred -------ccccch---HHHHHH---HHHHHHHhcCCeEEEEeC----chhHHHHHHHhhc--CCCEEEEecCCHHHHHHH
Confidence 000010 011122 222333335788999992 1122233333332 223466666654431110
Q ss_pred -------cCCCCceecCCCChhhHHHHHHHhh
Q 036079 302 -------MGADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 302 -------~~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
......+.+++.+.++..+++....
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0111358899999999999998765
No 206
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=1.1e-05 Score=82.57 Aligned_cols=112 Identities=16% Similarity=0.138 Sum_probs=57.0
Q ss_pred hhhcCCCCcccEEEecCC-cccc-----cCccccCccccceeeccCccccc-----cchhhhccccccEEEcCCccccc-
Q 036079 540 LQMLLNLPRLRVFSLHGY-CVSK-----LPNEIGNLKHLRFLNLSGTEIQI-----LPESINSLYNLHTILLENCHRLK- 607 (1399)
Q Consensus 540 ~~~~~~l~~Lr~L~L~~n-~i~~-----lp~~~~~l~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~- 607 (1399)
...+...+.|+.|+|++| .+.. +...+...+.|++|+|++|.|.. +...+...++|++|+|++|..-.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 334555666666666666 5542 33445555666666666666552 33444555566666666643221
Q ss_pred ---cchhhhcccCcccEEEc--CCCccccc----CCcccccccccCccceEEe
Q 036079 608 ---KLCKDMGNLIKLHHLRN--SNVDSLEE----MPKGFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 608 ---~lp~~i~~L~~L~~L~l--~~n~~~~~----lp~~~~~L~~L~~L~l~~~ 651 (1399)
.+...+...++|++|++ ++|.+... +...+...++|++|++..|
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 13344555566666666 55552111 1222333455555555433
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.72 E-value=0.00039 Score=77.67 Aligned_cols=185 Identities=12% Similarity=0.055 Sum_probs=99.3
Q ss_pred CccccchhhHHHHHHHHhccCc------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
..++|.+..++.+.+++..... ......+.+.|+|++|+||||+|+.++.. .... .+.++++.-.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~---- 91 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLT---- 91 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTS----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHh----
Confidence 4699999999999887743100 00123467899999999999999999873 2211 2233332211
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh-----------hhHhhhc---ccCCCC--CCC
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY-----------NYWSILS---CPFEAV--APG 286 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~-----------~~~~~l~---~~~~~~--~~~ 286 (1399)
... ...........+......++.+|++|+++.... .....+. ..++.. +.+
T Consensus 92 ----------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 92 ----------SKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp ----------SSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred ----------hcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 000 111111222222233345778999999955311 0001111 111111 234
Q ss_pred cEEEEecCChh-----hhhccCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChH-HHHHHH
Q 036079 287 SKIVVTTRNLG-----VTVNMGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPL-AAKTLG 360 (1399)
Q Consensus 287 s~iivTtr~~~-----~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 360 (1399)
..||.||..+. +...+ ...+.+...+.++..+++...+..... .-..+....|++.+.|.+- ++..+.
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSC----CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55666776542 22222 134677777888888888776532211 1124566788999999875 554443
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.70 E-value=3.3e-05 Score=99.55 Aligned_cols=155 Identities=13% Similarity=0.136 Sum_probs=79.3
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh---ccC-C-ceEEEEeCCCCCHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ---RHF-E-IKAWTCVSEEFDVFRI 223 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~f-~-~~~wv~~~~~~~~~~~ 223 (1399)
..++||+++++++++.+... ..+.+.|+|++|+||||+|+.+++..... ... . .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 45899999999999999653 22346899999999999999998732110 011 1 123333211100
Q ss_pred HHHHHHhccCCCCCCcccHHHHHHHHHHHhc-CCeEEEEEcccCccChh-----hHh---hhcccCCCCCCCcEEEEecC
Q 036079 224 SKSILNSVASDQCTDKDDLNLLQEKLKKQLS-GKKFLLVLDDVWNESYN-----YWS---ILSCPFEAVAPGSKIVVTTR 294 (1399)
Q Consensus 224 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-~k~~LiVlDdv~~~~~~-----~~~---~l~~~~~~~~~~s~iivTtr 294 (1399)
+... .......+...+...-. +++.+|++|+++..... .++ .+...+ . ..+..+|.+|.
T Consensus 240 ---------g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~-~~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-A-RGELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-H-TTCCCEEEEEC
T ss_pred ---------cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-h-CCCeEEEEecC
Confidence 0000 11111222222322222 47899999999653210 011 121111 1 12344555554
Q ss_pred Chhh-----hhcc-CCCCceecCCCChhhHHHHHHHh
Q 036079 295 NLGV-----TVNM-GADPAYQLKELSNDDCLCVLTQI 325 (1399)
Q Consensus 295 ~~~~-----~~~~-~~~~~~~l~~l~~~~~~~l~~~~ 325 (1399)
.... ...+ .....+.+.+.+.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 3322 1111 11235889999999999998754
No 209
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.68 E-value=3.1e-05 Score=80.89 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=61.0
Q ss_pred hHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCC
Q 036079 157 DKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQC 236 (1399)
Q Consensus 157 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 236 (1399)
.++.+.+++.... .....+.+.|+|++|+|||+||+.+++. .......++|+++ .++...+...+...
T Consensus 37 ~~~~~~~~~~~~~--~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~-- 104 (202)
T 2w58_A 37 AIRFAERFVAEYE--PGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV------PELFRELKHSLQDQ-- 104 (202)
T ss_dssp HHHHHHHHHHHCC--SSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH------HHHHHHHHHC---C--
T ss_pred HHHHHHHHHHHhh--hccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh------HHHHHHHHHHhccc--
Confidence 4455556655431 1112267899999999999999999973 3333334566654 24444444333211
Q ss_pred CCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhh--hcc-cCCCC-CCCcEEEEecCC
Q 036079 237 TDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSI--LSC-PFEAV-APGSKIVVTTRN 295 (1399)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~--l~~-~~~~~-~~~s~iivTtr~ 295 (1399)
........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 105 ----~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 ----TMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----hHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11222222221 2399999996644333322 211 11111 245578888874
No 210
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.65 E-value=0.00034 Score=81.23 Aligned_cols=188 Identities=13% Similarity=0.042 Sum_probs=99.3
Q ss_pred CCccccchhhHHHHHHHHhccCc------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
-.+++|.+..++.+.+++..... ......+.|.|+|++|+|||++|+.+++. .... .+.++++.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc-
Confidence 35699999999999988732100 00123467899999999999999999862 2211 223332221110
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC-----------hhhHhhhcccCC----CCCCC
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES-----------YNYWSILSCPFE----AVAPG 286 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~-----------~~~~~~l~~~~~----~~~~~ 286 (1399)
. .......+...+...-..++.+|+||+++... ......+...+. .....
T Consensus 188 ---------~------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 188 ---------Y------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred ---------c------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 0 00111112222222233466899999996431 011111111111 11233
Q ss_pred cEEEEecCChhhhh-c-cCCC-CceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh-HHHHHHH
Q 036079 287 SKIVVTTRNLGVTV-N-MGAD-PAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP-LAAKTLG 360 (1399)
Q Consensus 287 s~iivTtr~~~~~~-~-~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 360 (1399)
..||.||....... . .... ..+.+...+.++..+++...+.... . .-..+....|++.+.|.. -++..+.
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~---~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-S---PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-C---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC-C---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45565665432111 1 1111 3478888999999999987763321 1 112456688999998854 3555554
No 211
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.63 E-value=2.3e-05 Score=76.23 Aligned_cols=110 Identities=11% Similarity=0.061 Sum_probs=62.7
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILN 229 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 229 (1399)
.++|++..++++.+.+.... ....-|.|+|.+|+|||++|+.+++... ..+.++++. ..+ ..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~---~~~---~~-- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE---YLI---DM-- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT---HHH---HC--
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh---CCh---Hh--
Confidence 58999999999888876432 1223478999999999999999987322 112222111 110 00
Q ss_pred hccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCC-CCCcEEEEecCC
Q 036079 230 SVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAV-APGSKIVVTTRN 295 (1399)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~-~~~s~iivTtr~ 295 (1399)
...+.+. .+.-.+++|+++.........+...+... ..+.++|.||..
T Consensus 67 ----------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ----------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 12347899999887655555554443322 345678887763
No 212
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.62 E-value=0.00038 Score=77.52 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=97.7
Q ss_pred CccccchhhHHHHHHHHhccC-------cCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 149 AKVYGREKDKEAIVELLLRDD-------LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
.+++|.+..++++.+++...- .-+-...+.+.|+|++|+|||++|+.+++. .... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 469999998888888774310 001134467899999999999999999973 2221 22222 22
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChh--------------hHhhhcccCC--CCCC
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYN--------------YWSILSCPFE--AVAP 285 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~--------------~~~~l~~~~~--~~~~ 285 (1399)
++... ..+.. ... +...+.......+.+|++|+++..... ....+...+. ....
T Consensus 84 ~l~~~----~~g~~---~~~---~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 84 ELLTM----WFGES---EAN---VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHH----HHTTC---TTH---HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHhh----hcCch---HHH---HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 33222 22211 111 223333333457899999999642110 0112221111 1123
Q ss_pred CcEEEEecCChhhhhc--cC--C-CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHH
Q 036079 286 GSKIVVTTRNLGVTVN--MG--A-DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLA 355 (1399)
Q Consensus 286 ~s~iivTtr~~~~~~~--~~--~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 355 (1399)
+..||.||..+..... .. . ...+.+...+.++-.+++........ ...... ...+++.+.|.|=+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~-~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC-CCccch----HHHHHHHcCCCCHH
Confidence 5567777765532211 11 1 13578899999998888877653221 111111 24566677777643
No 213
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.58 E-value=1.3e-05 Score=86.11 Aligned_cols=103 Identities=20% Similarity=0.160 Sum_probs=71.8
Q ss_pred CCCCcccE--EEecCCcccccCcc----ccCccccceeeccCcccccc---chhhhccccccEEEcCCccccccchhhhc
Q 036079 544 LNLPRLRV--FSLHGYCVSKLPNE----IGNLKHLRFLNLSGTEIQIL---PESINSLYNLHTILLENCHRLKKLCKDMG 614 (1399)
Q Consensus 544 ~~l~~Lr~--L~L~~n~i~~lp~~----~~~l~~L~~L~Ls~n~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 614 (1399)
...+.|+. ++++.|....++.. ..++++|+.|+|++|+|+.+ |..+..+++|++|+|++| .+..+ ..+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhh
Confidence 33344554 56667755444332 25688999999999999865 466789999999999995 45555 3455
Q ss_pred ccC--cccEEEcCCCcccccCCc-------ccccccccCccce
Q 036079 615 NLI--KLHHLRNSNVDSLEEMPK-------GFGKLTCLLTLCT 648 (1399)
Q Consensus 615 ~L~--~L~~L~l~~n~~~~~lp~-------~~~~L~~L~~L~l 648 (1399)
.+. +|++|++++|.....+|. .+..+++|+.|+.
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 555 999999999986555652 2566777777754
No 214
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.57 E-value=0.00028 Score=83.69 Aligned_cols=94 Identities=11% Similarity=0.051 Sum_probs=60.1
Q ss_pred EEEEEcccCccChhhHhhhcccCCCCCCCcEEE-Ee---------cC----C----hhhhhccCCCCceecCCCChhhHH
Q 036079 258 FLLVLDDVWNESYNYWSILSCPFEAVAPGSKIV-VT---------TR----N----LGVTVNMGADPAYQLKELSNDDCL 319 (1399)
Q Consensus 258 ~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~ii-vT---------tr----~----~~~~~~~~~~~~~~l~~l~~~~~~ 319 (1399)
-++++|+++......++.+...+...... .+| .| |. . +.+..++ ..+.+.+++.++..
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~ 372 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMK 372 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHH
Confidence 39999999888777788877776654444 344 34 22 1 0122222 34799999999999
Q ss_pred HHHHHhhcCCCCCCCChhhHHHHHHHHHHc-CCChHHHHHH
Q 036079 320 CVLTQISLGARDFSMHQSLKEVGEKIAMKC-KGLPLAAKTL 359 (1399)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plal~~~ 359 (1399)
+++...+.... .. -.++....|++.+ +|.|-....+
T Consensus 373 ~iL~~~~~~~~-~~---~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 373 QIIKIRAQTEG-IN---ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHHT-CC---BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHHhC-CC---CCHHHHHHHHHHccCCCHHHHHHH
Confidence 99987753211 11 1245667788888 7887655444
No 215
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.54 E-value=0.00034 Score=82.76 Aligned_cols=185 Identities=14% Similarity=0.069 Sum_probs=101.8
Q ss_pred CccccchhhHHHHHHHHhccCc-------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
..++|.+..++++.+++...-. -+....+-|.|+|++|+|||++|+++++. .... .+.+++ .
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~------~ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLING------P 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEH------H
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEc------h
Confidence 4589999999999888753200 00234456899999999999999999872 2222 223332 1
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh-----------hhHhhhcccCC--CCCCCcE
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY-----------NYWSILSCPFE--AVAPGSK 288 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~-----------~~~~~l~~~~~--~~~~~s~ 288 (1399)
++...+ ...........+....++++.+|+||+++.... .....+...+. ....+.+
T Consensus 273 ----~l~~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 ----EIMSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp ----HHHTSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred ----Hhhhhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 111111 112222334445555567789999999943110 11122222222 1223456
Q ss_pred EEEecCChhh-hhcc----CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC-hHHHHHH
Q 036079 289 IVVTTRNLGV-TVNM----GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL-PLAAKTL 359 (1399)
Q Consensus 289 iivTtr~~~~-~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 359 (1399)
||.||..... ...+ .-...+.+...+.++-.+++..++.... ..... ...++++.+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~-l~~~~----~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDV----DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC-BCTTC----CHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC-Ccchh----hHHHHHHHccCCcHHHHHHH
Confidence 6667665422 1111 1123588999999999999988763211 11111 235577777774 5445444
No 216
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.53 E-value=0.00047 Score=77.67 Aligned_cols=121 Identities=16% Similarity=0.189 Sum_probs=66.0
Q ss_pred ccccchhhHHHHHHHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKS 226 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1399)
.++|.+..++.+...+..... ........+.|+|++|+|||++|+.++.. ....-...+.++++.-.... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 488999999988888865311 01223468999999999999999999873 22111224455554433221 1222
Q ss_pred HHHhccCCCCCCc-ccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhccc
Q 036079 227 ILNSVASDQCTDK-DDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCP 279 (1399)
Q Consensus 227 il~~l~~~~~~~~-~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~ 279 (1399)
+. +....... .....+...+. ....-+++||+++.........+...
T Consensus 95 l~---g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~ 142 (311)
T 4fcw_A 95 LI---GAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQM 142 (311)
T ss_dssp HH---CCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHH
T ss_pred hc---CCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHH
Confidence 22 11110000 00011222222 23446999999987665555555443
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.45 E-value=0.00091 Score=85.37 Aligned_cols=155 Identities=16% Similarity=0.186 Sum_probs=86.6
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh----ccCCceEEE-EeCCCCCHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFEIKAWT-CVSEEFDVFRI 223 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~~f~~~~wv-~~~~~~~~~~~ 223 (1399)
..++||+.+++++.+.|... ...-+.|+|++|+|||++|+.++...... ......+|. +.+. +
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H
Confidence 45899999999999999643 33457899999999999999998732110 011223321 1110 0
Q ss_pred HHHHHHhccCCCCCCcccHHHHHHHHHHHh-cCCeEEEEEcccCcc---------ChhhHhhhcccCCCCCCCcEEEEec
Q 036079 224 SKSILNSVASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNE---------SYNYWSILSCPFEAVAPGSKIVVTT 293 (1399)
Q Consensus 224 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LiVlDdv~~~---------~~~~~~~l~~~~~~~~~~s~iivTt 293 (1399)
+... . .....++....+.+.+ +.++.+|++|+++.. ..+....+...+ .. .+.++|.+|
T Consensus 254 -------~~~~-~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~~-~~~~~I~at 322 (758)
T 1r6b_X 254 -------LAGT-K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-SS-GKIRVIGST 322 (758)
T ss_dssp --------CCC-C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-SS-CCCEEEEEE
T ss_pred -------hccc-c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-hC-CCeEEEEEe
Confidence 0000 1 1122232333333333 346789999999754 111122233332 22 345666666
Q ss_pred CChhhhhccC-------CCCceecCCCChhhHHHHHHHhh
Q 036079 294 RNLGVTVNMG-------ADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 294 r~~~~~~~~~-------~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
.......... ....+.+.+.+.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 6544321111 11258899999999888887654
No 218
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.45 E-value=0.0002 Score=78.36 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=34.3
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.++|++..+.++.+.+.... .....|.|+|.+|+|||++|+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 48999999998888776432 12246789999999999999999974
No 219
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00091 Score=75.43 Aligned_cols=179 Identities=17% Similarity=0.104 Sum_probs=96.0
Q ss_pred CccccchhhHHHHHHHHhcc----C---cCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 149 AKVYGREKDKEAIVELLLRD----D---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
.++.|-++.++++.+.+.-. + .-+-..++-|.++|++|+|||.||+++++ +....| +.+..+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~--- 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELV--- 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhh---
Confidence 46788888888877665321 0 00223456789999999999999999998 333332 223322111
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh--------h------hHhhhcccCC--CCCC
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY--------N------YWSILSCPFE--AVAP 285 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~--------~------~~~~l~~~~~--~~~~ 285 (1399)
.. . .+.....+.+.+...-+..+++|++|+++..-. . ....+...+. ....
T Consensus 220 -----------sk-~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 220 -----------QK-Y-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp -----------CS-S-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred -----------cc-c-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 00 0 112222233333333346789999999965210 0 0111111111 1223
Q ss_pred CcEEEEecCChhhhhc-----cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh
Q 036079 286 GSKIVVTTRNLGVTVN-----MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP 353 (1399)
Q Consensus 286 ~s~iivTtr~~~~~~~-----~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (1399)
+..||.||..++..+. ..-...+.+..-+.++-.++|+.+..... ....-+ ..+|++++.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHCCCCC
Confidence 4456667765432211 12234688888888888888877653211 111112 356788888753
No 220
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.39 E-value=0.00017 Score=73.74 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=82.0
Q ss_pred hhcCccceeEEecccccCCCCc-chhh----HHhhhcCCCCcccEEEecCCcccc-----cCccccCccccceeeccCcc
Q 036079 512 SICDVKHLRTFLPMKLSNYEGN-YLAW----SVLQMLLNLPRLRVFSLHGYCVSK-----LPNEIGNLKHLRFLNLSGTE 581 (1399)
Q Consensus 512 ~~~~~~~lr~l~~~~~~~~~~~-~~~~----~~~~~~~~l~~Lr~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~ 581 (1399)
.+...+.++++- +++| .+.. .+...+...++|++|+|++|.|.. +...+...+.|++|+|++|.
T Consensus 31 ~l~~~~~L~~L~------L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 31 IQNNDPDLEEVN------LNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHTTCTTCCEEE------CTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHhcCCCCCEEE------ecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 344556666653 3344 4433 244557888999999999999873 45566777899999999999
Q ss_pred ccc-----cchhhhccccccEEEc--CCcccccc----chhhhcccCcccEEEcCCCc
Q 036079 582 IQI-----LPESINSLYNLHTILL--ENCHRLKK----LCKDMGNLIKLHHLRNSNVD 628 (1399)
Q Consensus 582 i~~-----lp~~i~~L~~L~~L~L--~~~~~l~~----lp~~i~~L~~L~~L~l~~n~ 628 (1399)
|.. +...+...++|++|+| ++|..-.. +...+...++|++|++++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 983 5677888899999999 76543222 44556777999999999997
No 221
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.37 E-value=0.00031 Score=78.13 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++|++..+.++.+.+.... .....|.|+|.+|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHH
Confidence 358999999999998886532 1234578999999999999999986
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.37 E-value=0.00034 Score=89.08 Aligned_cols=149 Identities=18% Similarity=0.163 Sum_probs=79.7
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcc---hhccCCceEEEEeCCCCCHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDR---VQRHFEIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1399)
..+|||+.+++++.+.+... ...-+.++|++|+|||++|+.+++... +.......-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 45999999999999999653 223478999999999999999987320 000011111111111
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhhhc--c-
Q 036079 226 SILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVTVN--M- 302 (1399)
Q Consensus 226 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~~--~- 302 (1399)
-....+. -... +...+......++.+|++|.. .+....+...+. ....++|.||........ .
T Consensus 245 --g~~~~G~---~e~~---l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 --GTKYRGE---FEDR---LKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred --cccccch---HHHH---HHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 0000000 1112 222333333467889999922 122223333332 234566666665441110 0
Q ss_pred ----CCCCceecCCCChhhHHHHHHHhh
Q 036079 303 ----GADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 303 ----~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
.....+.+.+.+.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 111358999999999999998654
No 223
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0014 Score=75.29 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=95.7
Q ss_pred CccccchhhHHHHHHHHhcc----C---cCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 149 AKVYGREKDKEAIVELLLRD----D---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
.++.|-++.+++|.+.+.-. + .-+-..++-|.++|++|+|||.+|+++++. ....| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 45788888888777766321 0 002234578899999999999999999983 33222 2333222110
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC----------hh----hHhhhcccCC--CCCC
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES----------YN----YWSILSCPFE--AVAP 285 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~----------~~----~~~~l~~~~~--~~~~ 285 (1399)
.. .......+...+...-...+++|++|+++..- .. ....+...+. ....
T Consensus 254 ------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 ------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp ------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred ------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 00 11222222233333334689999999996421 00 0111222111 1223
Q ss_pred CcEEEEecCChhhhhc-c-CC---CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh
Q 036079 286 GSKIVVTTRNLGVTVN-M-GA---DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP 353 (1399)
Q Consensus 286 ~s~iivTtr~~~~~~~-~-~~---~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (1399)
+..||.||..++..+. + .. ...+.+..-+.++-.++|+.+...-.. ...-+ ...|++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 4567777776543222 1 11 134778777778878888766532211 11111 356778888753
No 224
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.31 E-value=0.0011 Score=71.91 Aligned_cols=185 Identities=13% Similarity=0.051 Sum_probs=93.0
Q ss_pred CCccccchhhHHHHHHHHh---ccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 148 EAKVYGREKDKEAIVELLL---RDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
-.+++|.+..++++.+.+. .... -+....+-+.|+|++|+||||+|+.+++. .... .+.++.+.-.+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~-- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE-- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH--
Confidence 3468999888777665542 2110 00112345889999999999999999873 2212 23332221100
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh--------------hhHhhhcccCC--CCCC
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY--------------NYWSILSCPFE--AVAP 285 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~--------------~~~~~l~~~~~--~~~~ 285 (1399)
.. .......+...+.......+.++++|+++.... .....+...+. ....
T Consensus 84 --------~~------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 --------MF------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp --------SC------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred --------Hh------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 00 111122333334444445678999999843210 01111111111 1123
Q ss_pred CcEEEEecCChhhh-hcc-C---CCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCC-ChHHHHH
Q 036079 286 GSKIVVTTRNLGVT-VNM-G---ADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKG-LPLAAKT 358 (1399)
Q Consensus 286 ~s~iivTtr~~~~~-~~~-~---~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~ 358 (1399)
+..||.||...... ... . -...+.+...+.++-.+++....... ..... .....+++.+.| .+--|..
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~-~l~~~----~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-PLAPD----IDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTT----CCHHHHHHTCTTCCHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC-CCCcc----ccHHHHHHHcCCCCHHHHHH
Confidence 45667777654321 111 1 11346777778888888887665221 11111 113457777888 6654443
No 225
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.31 E-value=0.00055 Score=77.08 Aligned_cols=50 Identities=26% Similarity=0.264 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhccCcC--------CCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 149 AKVYGREKDKEAIVELLLRDDLR--------ADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~--------~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++|++..++.+...+...... .......+.|+|++|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999998887541000 012345688999999999999999987
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.27 E-value=0.00031 Score=89.44 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=86.9
Q ss_pred CccccchhhHHHHHHHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1399)
..++|.+..++.+.+.+..... ........+.++|++|+|||++|+.+++. ....-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 4689999999999888875321 01123347999999999999999999873 21212234455544321100
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCC-----------CCCCcEEEEecC
Q 036079 226 SILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEA-----------VAPGSKIVVTTR 294 (1399)
Q Consensus 226 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~-----------~~~~s~iivTtr 294 (1399)
. .. ...+...+++ ...-+|+||+++.........+...+.. .....+||+||.
T Consensus 565 ----------~-~~--~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 565 ----------S-TS--GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ----------C-CC-----CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ----------c-cc--cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0 00 0111112221 2345899999988766555555433322 123568888887
Q ss_pred C-----------------hhhhhccCCCCceecCCCChhhHHHHHHHhh
Q 036079 295 N-----------------LGVTVNMGADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 295 ~-----------------~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
. +.+...+. ..+.+.+++.++..+++....
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~--~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRID--EIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSS--EEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCC--eEEecCCCCHHHHHHHHHHHH
Confidence 3 11212221 357788888888777766543
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.0015 Score=74.88 Aligned_cols=51 Identities=31% Similarity=0.247 Sum_probs=37.8
Q ss_pred CCccccchhhHHHHHHHHhcc----C---cCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 148 EAKVYGREKDKEAIVELLLRD----D---LRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
-.++.|-++.+++|.+.+.-. + .-+-..++-|.++|++|+|||++|+++++
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 346889998888887766321 0 00223557789999999999999999997
No 228
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.23 E-value=0.0079 Score=77.41 Aligned_cols=137 Identities=15% Similarity=0.200 Sum_probs=72.3
Q ss_pred CccccchhhHHHHHHHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1399)
..++|.+..++.+...+..... +.......+.|+|++|+|||++|+.+++. ....-...+.++++.-.... .
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~-- 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-A-- 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-G--
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-H--
Confidence 3589999999999888865321 01223468899999999999999999873 21111123444444322210 0
Q ss_pred HHHHhccCCCCC--CcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCC-----------CCCcEEEEe
Q 036079 226 SILNSVASDQCT--DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAV-----------APGSKIVVT 292 (1399)
Q Consensus 226 ~il~~l~~~~~~--~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~-----------~~~s~iivT 292 (1399)
...+.+..+. .......+...++. ...-+|+||+++....+....+...+... -.+..||+|
T Consensus 633 --~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 633 --VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp --GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred --HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 0111110000 00000112222222 23468999999887666665555444322 124457777
Q ss_pred cCC
Q 036079 293 TRN 295 (1399)
Q Consensus 293 tr~ 295 (1399)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 764
No 229
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.22 E-value=0.0004 Score=76.21 Aligned_cols=157 Identities=14% Similarity=0.085 Sum_probs=80.2
Q ss_pred CccccchhhHHHHHHHHhccCc------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
.+++|.+..++++.+.+..-.. ......+-+.|+|++|+|||++|+.+++. ....|- .+..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~---- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFI---- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHH----
Confidence 4699999888887776642000 00112234789999999999999999973 222221 11111100
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChh---------------hHhhhcccCCC---CC
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYN---------------YWSILSCPFEA---VA 284 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~---------------~~~~l~~~~~~---~~ 284 (1399)
....+.. ..... ..+......++.+|++|+++..... ....+...+.. ..
T Consensus 82 ------~~~~~~~---~~~~~---~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 82 ------EMFVGLG---ASRVR---DLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp ------TSCSSSC---SSSSS---TTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred ------HhhcchH---HHHHH---HHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 0011110 01111 1122222346789999999653211 11222222221 11
Q ss_pred CCcEEEEecCChhhhh-c-c---CCCCceecCCCChhhHHHHHHHhh
Q 036079 285 PGSKIVVTTRNLGVTV-N-M---GADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 285 ~~s~iivTtr~~~~~~-~-~---~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
....||.||....... . . .-...+.+.+.+.++..+++....
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2345666776543211 1 1 112357888888888888887765
No 230
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.22 E-value=0.00013 Score=71.28 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...++|+|+.|+|||||++.++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999974
No 231
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0026 Score=72.66 Aligned_cols=178 Identities=17% Similarity=0.122 Sum_probs=94.8
Q ss_pred CccccchhhHHHHHHHHhc----cC---cCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 149 AKVYGREKDKEAIVELLLR----DD---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
.++.|-++.+++|.+.+.- .+ .-+-..++-|.++|++|+|||.+|+++++ +....| +.+..+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~----- 278 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSE----- 278 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGG-----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHH-----
Confidence 4688999888888776421 10 00224567889999999999999999997 333322 2233221
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh----------h----hHhhhcccCC--CCCC
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY----------N----YWSILSCPFE--AVAP 285 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~----------~----~~~~l~~~~~--~~~~ 285 (1399)
+.... .......+...+...-...+++|++|+++.... . ....+...+. ....
T Consensus 279 ---------L~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 279 ---------LVQKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ---------GCCCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ---------hhccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 11110 112222233333333346789999999864210 0 0011111111 1123
Q ss_pred CcEEEEecCChhhhhc----cC-CCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC
Q 036079 286 GSKIVVTTRNLGVTVN----MG-ADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL 352 (1399)
Q Consensus 286 ~s~iivTtr~~~~~~~----~~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 352 (1399)
+..||.||..+..... .+ -...+.+..-+.++-.++|+.+...- .....-. ...|++.+.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~-~l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM-SVERGIR----WELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS-CBCSSCC----HHHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC-CCCCCCC----HHHHHHHCCCC
Confidence 4456667765432211 11 22457888888888888888765321 1111111 35677888875
No 232
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.002 Score=74.03 Aligned_cols=179 Identities=16% Similarity=0.109 Sum_probs=93.4
Q ss_pred CCccccchhhHHHHHHHHhc----cCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCH
Q 036079 148 EAKVYGREKDKEAIVELLLR----DDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDV 220 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1399)
=.++.|-++.+++|.+.+.- .+. .+-..++-|.++|++|+|||.+|+++++ +....| +.++.+.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~---- 250 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQ---- 250 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGG----
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhh----
Confidence 35688999888888776431 110 0234567889999999999999999997 333222 2232221
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCcc------Ch----hh----HhhhcccCCC--CC
Q 036079 221 FRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE------SY----NY----WSILSCPFEA--VA 284 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~------~~----~~----~~~l~~~~~~--~~ 284 (1399)
+.... .+.....+...+...-...+++|++|+++.. .. .. ...+...+.. ..
T Consensus 251 ----------l~~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 251 ----------LVQMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp ----------GCSSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ----------hhhcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 11110 1111122222222222357899999998531 00 00 1112222211 12
Q ss_pred CCcEEEEecCChhhhhc-c-CC---CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC
Q 036079 285 PGSKIVVTTRNLGVTVN-M-GA---DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL 352 (1399)
Q Consensus 285 ~~s~iivTtr~~~~~~~-~-~~---~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 352 (1399)
.+..||.||..++.... + .. ...+.+..-+.++-.++|+.+...-. ....-+ ...|++.+.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT-TDDDIN----WQELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC-BCSCCC----HHHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCC
Confidence 34456667766543222 1 11 13577888788888888876543211 111111 35677888775
No 233
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0044 Score=70.10 Aligned_cols=178 Identities=16% Similarity=0.097 Sum_probs=92.9
Q ss_pred CccccchhhHHHHHHHHhc----cCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 149 AKVYGREKDKEAIVELLLR----DDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
.++.|-++.+++|.+.+.- .+. .+-..++-|.++|++|+|||.+|+++++. ....| +.++.+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~----- 251 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSE----- 251 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGG-----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHH-----
Confidence 4577888888877776532 100 02234578999999999999999999983 33222 2222211
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh--------------hhHhhhcccCC--CCCC
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY--------------NYWSILSCPFE--AVAP 285 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~--------------~~~~~l~~~~~--~~~~ 285 (1399)
+.... .......+...+...-+..+++|++|+++.... .....+...+. ....
T Consensus 252 ---------l~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 252 ---------LIQKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ---------GCCSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ---------hhhcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 11110 112222222233333346789999999864210 00111111111 1223
Q ss_pred CcEEEEecCChhhhhc-c-CCC---CceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC
Q 036079 286 GSKIVVTTRNLGVTVN-M-GAD---PAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL 352 (1399)
Q Consensus 286 ~s~iivTtr~~~~~~~-~-~~~---~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 352 (1399)
+..||.||..++..+. + ... ..+.+..-+.++-.++|+.+... ......-+ ...|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~-~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK-MNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT-SCBCSCCC----HHHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC-CCCCCcCC----HHHHHHhCCCC
Confidence 4456667765543322 1 111 24777777778878888776532 11111112 35677778775
No 234
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.06 E-value=0.0036 Score=73.23 Aligned_cols=179 Identities=13% Similarity=0.044 Sum_probs=95.1
Q ss_pred CccccchhhHHHHHHHHhccCc------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
.+++|.++.++++.+.+..-.. -+...++-|.|+|++|+|||+||+.++.. .... .+.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH--
Confidence 4689999887777665432100 01112345889999999999999999973 2222 223333221110
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh--------------hhHhhhcccCC--CCCCC
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY--------------NYWSILSCPFE--AVAPG 286 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~--------------~~~~~l~~~~~--~~~~~ 286 (1399)
+ ...........+.......+.+|++|+++.... .....+...+. ....+
T Consensus 89 --------~------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 --------F------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp --------C------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred --------H------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 011122233344444556789999999955211 01122221111 11235
Q ss_pred cEEEEecCChhhhhc--cC--CC-CceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh
Q 036079 287 SKIVVTTRNLGVTVN--MG--AD-PAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP 353 (1399)
Q Consensus 287 s~iivTtr~~~~~~~--~~--~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (1399)
..||.||..+..... .. .. ..+.+...+.++-.+++..+..... ...... ...|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 567777776543221 11 11 2577888888887888876653211 111111 345788888876
No 235
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.01 E-value=0.003 Score=71.63 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=83.5
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILN 229 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 229 (1399)
.++|+++.++.+...+... +-+.++|++|+|||++|+.+++. .... ...+.+.......++ ..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l----~g 90 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDL----IG 90 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHH----HE
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhc----CC
Confidence 5899999999998888642 35889999999999999999872 2222 223344333333332 11
Q ss_pred hccCCCCCCcccHHHHHHHHHHHhcC--CeEEEEEcccCccChhhHhhhcccCCC-----------CCCCcEEEEecCCh
Q 036079 230 SVASDQCTDKDDLNLLQEKLKKQLSG--KKFLLVLDDVWNESYNYWSILSCPFEA-----------VAPGSKIVVTTRNL 296 (1399)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~l~~~l~~--k~~LiVlDdv~~~~~~~~~~l~~~~~~-----------~~~~s~iivTtr~~ 296 (1399)
........... ..-.+ ...++++|+++.........+...+.. ......|+.|+...
T Consensus 91 ~~~~~~~~~~~----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 91 TMIYNQHKGNF----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp EEEEETTTTEE----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred ceeecCCCCce----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 11100000000 00001 125899999987655444433322211 12344556565522
Q ss_pred h----------hhhccCCCCceecCCCChhhHHHHHHHhhc
Q 036079 297 G----------VTVNMGADPAYQLKELSNDDCLCVLTQISL 327 (1399)
Q Consensus 297 ~----------~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 327 (1399)
. +...+ ...+.+.+.+.++-.+++.+...
T Consensus 161 ~~~~~~~l~~~l~~Rf--~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRF--MMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTS--SEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhhe--eEEEEcCCCCHHHHHHHHHhccc
Confidence 1 11111 11478999999999999988764
No 236
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.97 E-value=0.0022 Score=77.47 Aligned_cols=162 Identities=20% Similarity=0.195 Sum_probs=78.6
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.+++|-+...+.+.+.+.-..........++.|+|++|+||||+|+.++.. ....| ..+.++...+..++.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 457888887777765543211111224568999999999999999999873 22222 2233333222211111111
Q ss_pred HhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChh----hHhhhcccCCCCC---------------CCcEE
Q 036079 229 NSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYN----YWSILSCPFEAVA---------------PGSKI 289 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~----~~~~l~~~~~~~~---------------~~s~i 289 (1399)
..++. ........+... ....-++++|+++..... ....+...+.... ....|
T Consensus 156 ~~ig~-------~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 156 TYVGA-------MPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHhcc-------CchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 11110 011112222222 223338889999765432 1233333322110 33466
Q ss_pred EEecCChh-----hhhccCCCCceecCCCChhhHHHHHHHhh
Q 036079 290 VVTTRNLG-----VTVNMGADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 290 ivTtr~~~-----~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
|.||.... +..++ ..+.+.+++.++-.+++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 66666432 22223 357888999888888877653
No 237
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.76 E-value=0.0038 Score=65.92 Aligned_cols=87 Identities=20% Similarity=0.100 Sum_probs=52.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccC-----------CCCCCcccHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVAS-----------DQCTDKDDLN 243 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-----------~~~~~~~~~~ 243 (1399)
...+++|+|++|+||||+|..++. ..-..++|++.....+..++.. +.+..+. .......+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 446899999999999999999986 1123577888766555554432 3332221 1111222333
Q ss_pred HHHHHHHHHhcCCeEEEEEcccCc
Q 036079 244 LLQEKLKKQLSGKKFLLVLDDVWN 267 (1399)
Q Consensus 244 ~~~~~l~~~l~~k~~LiVlDdv~~ 267 (1399)
+..+.++...+.+.-+||+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344455555544577999998743
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.70 E-value=0.00066 Score=75.44 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 155 EKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 155 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...++.+.+++.... ....+.+.|+|++|+|||+||.++++.
T Consensus 134 ~~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 134 MEAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344555556665421 112467899999999999999999984
No 239
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.62 E-value=0.0037 Score=79.75 Aligned_cols=120 Identities=17% Similarity=0.175 Sum_probs=65.0
Q ss_pred CccccchhhHHHHHHHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1399)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. .. ...+.++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 4589999999988887764321 01223457899999999999999999873 21 2233444443221100
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHh-cCCeEEEEEcccCccChhhHhhhcccC
Q 036079 226 SILNSVASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNESYNYWSILSCPF 280 (1399)
Q Consensus 226 ~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LiVlDdv~~~~~~~~~~l~~~~ 280 (1399)
+.+.++.. + .....++ ...+...+ +....+|+||+++....+....+...+
T Consensus 530 -~~~l~g~~-~-g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~l 581 (758)
T 1r6b_X 530 -VSRLIGAP-P-GYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVM 581 (758)
T ss_dssp -CSSSCCCC-S-CSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred -HhhhcCCC-C-CCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHh
Confidence 00111111 1 1111111 01122222 234679999999887665555554443
No 240
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.61 E-value=0.016 Score=72.01 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=97.0
Q ss_pred CccccchhhHHHHHHHHhc----cCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 149 AKVYGREKDKEAIVELLLR----DDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
.++.|-++.+++|.+++.- .+. -+-..++-|.++|++|+|||+||+++++. ...+| ++++.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH------
Confidence 4578888888877776531 111 02235678999999999999999999984 22222 233321
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh-----------hhHhhhcccCCC--CCCCcE
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY-----------NYWSILSCPFEA--VAPGSK 288 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~-----------~~~~~l~~~~~~--~~~~s~ 288 (1399)
++.... .......+...+....+..+.+|++|+++..-. .....+...+.. ...+..
T Consensus 273 ----~l~sk~------~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 ----EIMSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ----HHHSSC------TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ----Hhhccc------chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 122111 122233344444445567899999999965210 001111111111 122344
Q ss_pred EEEecCChhhh-hccC---C-CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh
Q 036079 289 IVVTTRNLGVT-VNMG---A-DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP 353 (1399)
Q Consensus 289 iivTtr~~~~~-~~~~---~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (1399)
||.||...+.. ..+. . ...+++..-+.++-.++|+.+..... ....- ....|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dv----dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDV----DLEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTC----CHHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCccc----CHHHHHHhcCCCC
Confidence 55566554322 2221 1 13578888888888888887653211 11111 2356788888864
No 241
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.60 E-value=0.014 Score=64.35 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++.+.++|++|+|||+||+++++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999999999997
No 242
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.56 E-value=0.0086 Score=70.66 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.++|++..++.+...+... +-|.|+|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4899999999988887643 36889999999999999999973
No 243
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.56 E-value=0.0013 Score=71.48 Aligned_cols=69 Identities=19% Similarity=0.344 Sum_probs=45.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEe--CCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCV--SEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
.+++.|+|++|+|||+||.+++.. . -..++|+++ .+..+. ...+.++..+.+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~--G~~VlyIs~~~eE~v~~-----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---L--GGKDKYATVRFGEPLSG-----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---H--HTTSCCEEEEBSCSSTT-----------------CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---C--CCCEEEEEecchhhhhh-----------------hhcCHHHHHHHHHHHH
Confidence 467889999999999999999873 1 123567776 222110 0134455556666666
Q ss_pred cCCeEEEEEcccCc
Q 036079 254 SGKKFLLVLDDVWN 267 (1399)
Q Consensus 254 ~~k~~LiVlDdv~~ 267 (1399)
...+ +||+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 5555 999999944
No 244
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.53 E-value=0.0014 Score=68.02 Aligned_cols=116 Identities=8% Similarity=-0.085 Sum_probs=65.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC-CcccHHHHHHHHHHHh
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT-DKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l 253 (1399)
+..++.|+|..|+||||++..+++.. ..+-..++.+...... . ...+++++++..... .....+++.+.+.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 45799999999999999999888743 3222234444332221 1 222445555433221 1122344555555555
Q ss_pred cCCe-EEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhh
Q 036079 254 SGKK-FLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGV 298 (1399)
Q Consensus 254 ~~k~-~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~ 298 (1399)
.+.+ -+||+|.+.....+..+.+.. +.+ .|..||+|.++.+.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKNF 128 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBCT
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccccc
Confidence 4444 499999997654344444322 222 37789999996543
No 245
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.30 E-value=0.037 Score=59.66 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=86.1
Q ss_pred CCccccchhhHHHHHHHHhccCc------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
-.+++|.+..+.++.+....-.. -.-.-.+-+.|+|++|+||||||+.++... . ...+.+.. .
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~------~ 83 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASG------S 83 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEH------H
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeH------H
Confidence 34688988766655544321100 000111238999999999999999999732 2 12233321 1
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC----------hhh----HhhhcccCCCC--CC
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES----------YNY----WSILSCPFEAV--AP 285 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~----------~~~----~~~l~~~~~~~--~~ 285 (1399)
+ +.... .......+...++..-...+.++++|+++... ... ...+...+... ..
T Consensus 84 ~----~~~~~------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 84 D----FVEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp H----HHHSC------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred H----HHHHH------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC
Confidence 1 11111 00111122222222223456899999994310 001 11222112111 12
Q ss_pred CcEEEEecCChhhhhc-c----CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh
Q 036079 286 GSKIVVTTRNLGVTVN-M----GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP 353 (1399)
Q Consensus 286 ~s~iivTtr~~~~~~~-~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (1399)
...++.||..+..... . .-...+.+...+.++-.++++..+.+. ...... ....|++.+.|.-
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~----~~~~la~~~~G~~ 221 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDV----DLALLAKRTPGFV 221 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS-CBCTTC----CHHHHHHTCTTCC
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC-CCCccc----CHHHHHHHcCCCC
Confidence 2344456665544321 1 112357888888888888887665221 111111 1345777777753
No 246
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.14 E-value=0.036 Score=65.25 Aligned_cols=177 Identities=14% Similarity=0.081 Sum_probs=90.9
Q ss_pred cCCccccchhhHHHHHHHHhc---cCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCH
Q 036079 147 NEAKVYGREKDKEAIVELLLR---DDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDV 220 (1399)
Q Consensus 147 ~~~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1399)
.-.+++|.++.++++.+.... ... -+..-.+-+.|+|++|+||||||+.++.. .. ...+.++.+.-..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~- 102 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVE- 102 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTS-
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHH-
Confidence 345699998877666655432 110 00111234899999999999999999973 22 1223333321100
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhc----CCeEEEEEcccCccC----------hhhH----hhhcccCCC
Q 036079 221 FRISKSILNSVASDQCTDKDDLNLLQEKLKKQLS----GKKFLLVLDDVWNES----------YNYW----SILSCPFEA 282 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~----~k~~LiVlDdv~~~~----------~~~~----~~l~~~~~~ 282 (1399)
. . .. .....+...++ ..+.++++|+++... ...+ ..+...+..
T Consensus 103 -------------~-~-~g----~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------M-F-VG----VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------S-C-TT----HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------h-h-hh----hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0 0 00 11122222232 245899999995421 0111 122222221
Q ss_pred --CCCCcEEEEecCChhhhhc-c----CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh
Q 036079 283 --VAPGSKIVVTTRNLGVTVN-M----GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP 353 (1399)
Q Consensus 283 --~~~~s~iivTtr~~~~~~~-~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (1399)
...+..|+.||..+..... . .-...+.+...+.++-.+++..++.+. ..... .....|++.+.|..
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~d----v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAED----VDLALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCS----STTHHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChH----HHHHHHHHhcCCCC
Confidence 1233456666666654321 1 112357888888888888888765221 11111 11355788888865
No 247
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.09 E-value=0.013 Score=66.90 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=32.1
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++|.+..++.+....... ..+-+.|+|++|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~------~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCC------CCceEEEECCCCccHHHHHHHHHH
Confidence 45899988666554444321 122388999999999999999986
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.06 E-value=0.018 Score=72.98 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=85.0
Q ss_pred CCccccchhhHHHHHHHHhcc----Cc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCH
Q 036079 148 EAKVYGREKDKEAIVELLLRD----DL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDV 220 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1399)
-.+++|.+..++++.+++... +. -.-.....|.|+|++|+||||||+.++.. ....| +.++..
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~----- 272 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP----- 272 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch-----
Confidence 356899999999888887531 00 01234457899999999999999999873 22222 333321
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh-----------hhHhhhcccCC--CCCCCc
Q 036079 221 FRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY-----------NYWSILSCPFE--AVAPGS 287 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~-----------~~~~~l~~~~~--~~~~~s 287 (1399)
++. ... .......+...+.......+.++++|+++.... .....+...+. ....+.
T Consensus 273 -----~l~----~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 273 -----EIM----SKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -----HHS----SSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred -----Hhh----hhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 111 110 111122233334444445678999999943210 00111111111 112344
Q ss_pred EEEEecCChhhhh-ccC---CC-CceecCCCChhhHHHHHHHhh
Q 036079 288 KIVVTTRNLGVTV-NMG---AD-PAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 288 ~iivTtr~~~~~~-~~~---~~-~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
.+|.||..+.... .+. .. ..+.+...+.++-.+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5666666543221 111 11 246778888888888888765
No 249
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.01 E-value=0.064 Score=58.63 Aligned_cols=181 Identities=13% Similarity=0.064 Sum_probs=88.1
Q ss_pred cCCccccchhhHHHHHHHHhccCc------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCH
Q 036079 147 NEAKVYGREKDKEAIVELLLRDDL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDV 220 (1399)
Q Consensus 147 ~~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1399)
.-.+++|.++.++++.+....-.. -.-.-.+-+.|+|++|+||||||+.++... . ...+.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH-----
Confidence 345689988776666554432100 000111238999999999999999999732 2 122333211
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC----------hhhH----hhhcccCCCCC--
Q 036079 221 FRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES----------YNYW----SILSCPFEAVA-- 284 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~----------~~~~----~~l~~~~~~~~-- 284 (1399)
+ +.... .......+...++..-...+.++|+|+++... ...+ ..+...+....
T Consensus 108 -~----~~~~~------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 -D----FVEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp -H----HHHST------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred -H----HHHHH------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 1 11110 00111112222222223457899999994210 0111 11221121111
Q ss_pred CCcEEEEecCChhhhhc-----cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh
Q 036079 285 PGSKIVVTTRNLGVTVN-----MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP 353 (1399)
Q Consensus 285 ~~s~iivTtr~~~~~~~-----~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (1399)
....++.||..+..... ..-...+.+...+.++-.+++...+.. ....... ....+++.+.|..
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-~~~~~~~----~~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-KPLAEDV----DLALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SCBCTTC----CHHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc-CCCCccc----CHHHHHHHcCCCC
Confidence 12334445555433211 112246888888888888888776522 1111111 1345777787764
No 250
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.99 E-value=0.012 Score=65.95 Aligned_cols=86 Identities=21% Similarity=0.189 Sum_probs=55.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCC----CCcccHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQC----TDKDDLNLLQEKLK 250 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~ 250 (1399)
..+++.|+|++|+||||||.+++..... .=..++|++....++.. .+++++.... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999999863222 11246788877666644 3444443211 02344555555555
Q ss_pred HHhc-CCeEEEEEcccCc
Q 036079 251 KQLS-GKKFLLVLDDVWN 267 (1399)
Q Consensus 251 ~~l~-~k~~LiVlDdv~~ 267 (1399)
...+ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5544 4566899999843
No 251
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.97 E-value=0.013 Score=63.23 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=54.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC----CcccHHHH-HHHHHHH
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT----DKDDLNLL-QEKLKKQ 252 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~-~~~l~~~ 252 (1399)
++-|+|++|+||||||.+++.....+..=..++|++..+.++.. .+++++..... .+.+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999988643221112357899888777753 25666654221 23345554 3333322
Q ss_pred --h-cCCeEEEEEcccCc
Q 036079 253 --L-SGKKFLLVLDDVWN 267 (1399)
Q Consensus 253 --l-~~k~~LiVlDdv~~ 267 (1399)
+ +++.-+||+|-+..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 2 45788999999843
No 252
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.94 E-value=0.042 Score=62.29 Aligned_cols=157 Identities=10% Similarity=-0.049 Sum_probs=97.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHH-Hhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKK-QLS 254 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~ 254 (1399)
.++..++|+.|.||++.|..+.+... ...|+....+.+....+ .+++.+.+.. -+-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTD----------------------WNAIFSLCQAMSLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCC----------------------HHHHHHHHHHHHHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCC----------------------HHHHHHHhcCcCCc
Confidence 46899999999999999999987322 22343211112222222 2333333222 134
Q ss_pred CCeEEEEEcccCc-cChhhHhhhcccCCCCCCCcEEEEecCC-------hhhhhcc-CCCCceecCCCChhhHHHHHHHh
Q 036079 255 GKKFLLVLDDVWN-ESYNYWSILSCPFEAVAPGSKIVVTTRN-------LGVTVNM-GADPAYQLKELSNDDCLCVLTQI 325 (1399)
Q Consensus 255 ~k~~LiVlDdv~~-~~~~~~~~l~~~~~~~~~~s~iivTtr~-------~~~~~~~-~~~~~~~l~~l~~~~~~~l~~~~ 325 (1399)
+++-++|+|+++. .....++.+...+.....++.+|+++.. ..+...+ .....++..+++.++..+.+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5677889999976 5445666666666554567777766532 1233332 22346899999999999888877
Q ss_pred hcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 326 SLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
+.... . .-.++.+..+++.++|...++...
T Consensus 155 ~~~~g-~---~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLN-L---ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTT-C---EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcC-C---CCCHHHHHHHHHHhchHHHHHHHH
Confidence 63322 1 122577889999999998877654
No 253
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.91 E-value=0.026 Score=65.00 Aligned_cols=50 Identities=28% Similarity=0.266 Sum_probs=35.2
Q ss_pred CccccchhhHHHHHHHHh----ccC--------------------cCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 149 AKVYGREKDKEAIVELLL----RDD--------------------LRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~----~~~--------------------~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++|.+..++.+...+. ... .........+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 357898888888877762 100 00112334688999999999999999997
No 254
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.91 E-value=0.0039 Score=62.49 Aligned_cols=114 Identities=17% Similarity=0.081 Sum_probs=59.6
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC---CCHHHHHHHHHHhcc-------CCCCCCc-------
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE---FDVFRISKSILNSVA-------SDQCTDK------- 239 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~~l~-------~~~~~~~------- 239 (1399)
..|.|++-.|.||||.|-..+- +..++=..+.++..... ....++ ++.+. ....-..
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcHHHH
Confidence 4566666667999999987775 22232234555544432 222333 33331 0000011
Q ss_pred ccHHHHHHHHHHHhcCCe-EEEEEcccCcc---ChhhHhhhcccCCCCCCCcEEEEecCCh
Q 036079 240 DDLNLLQEKLKKQLSGKK-FLLVLDDVWNE---SYNYWSILSCPFEAVAPGSKIVVTTRNL 296 (1399)
Q Consensus 240 ~~~~~~~~~l~~~l~~k~-~LiVlDdv~~~---~~~~~~~l~~~~~~~~~~s~iivTtr~~ 296 (1399)
..........++.+.+.+ =|||||++-.. .....+++...+........||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 111223344455555544 49999998321 1122344444455555677899999984
No 255
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.85 E-value=0.021 Score=64.45 Aligned_cols=92 Identities=15% Similarity=0.180 Sum_probs=55.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhc----cCCceEEEEeCCCCCHHHHHHHHHHhccCCC-----------CCC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFEIKAWTCVSEEFDVFRISKSILNSVASDQ-----------CTD 238 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----------~~~ 238 (1399)
....++.|+|.+|+||||+|.+++....... .-..++|++....++..++.. ++..++... ...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 3557999999999999999999886322211 124678998888777665543 344443321 111
Q ss_pred cccHHHHHHHHHHHhc---CCeEEEEEcccC
Q 036079 239 KDDLNLLQEKLKKQLS---GKKFLLVLDDVW 266 (1399)
Q Consensus 239 ~~~~~~~~~~l~~~l~---~k~~LiVlDdv~ 266 (1399)
.....++...+.+.++ .+.-+||+|.+.
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 2222233333444443 456688888873
No 256
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.61 E-value=0.032 Score=60.57 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=76.2
Q ss_pred CccccchhhHHHHHHHHhcc----C----cCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCH
Q 036079 149 AKVYGREKDKEAIVELLLRD----D----LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDV 220 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~----~----~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1399)
.++.|-++.++++.+.+... + ..-....+ +.|+|++|+||||||+.++... .. ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~--~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANES--GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHT--TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHc--CC---CEEEEEcHHHHhh
Confidence 34777777777666544210 0 00011222 8999999999999999998732 11 2334432211100
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh-cCCeEEEEEcccCccCh-----------hhHhhhcccCCC--CCCC
Q 036079 221 FRISKSILNSVASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNESY-----------NYWSILSCPFEA--VAPG 286 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LiVlDdv~~~~~-----------~~~~~l~~~~~~--~~~~ 286 (1399)
...........+.+.. ...+.++++|+++.... .....+...+.. ....
T Consensus 84 -----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 84 -----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred -----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 0001111122222222 34678999999854210 000111111111 1123
Q ss_pred cEEEEecCChhhhhcc-----CCCCceecCCCChhhHHHHHHHhh
Q 036079 287 SKIVVTTRNLGVTVNM-----GADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 287 s~iivTtr~~~~~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
.-++.+|..+.+.+.. .-...+.+...+.++-.++++...
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 3455666665443221 112347788888888888887765
No 257
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.59 E-value=0.026 Score=63.23 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=54.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhcc----CCceEEEEeCCCCCHHHHHHHHHHhccCCCC--------CCcccH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRH----FEIKAWTCVSEEFDVFRISKSILNSVASDQC--------TDKDDL 242 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~ 242 (1399)
...++.|+|.+|+||||+|.+++........ -..++|++....++..++. ++++.++.... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 4468999999999999999999863211110 2367899888877766554 33455543210 011122
Q ss_pred H---HHHHHHHHHhc--CCeEEEEEccc
Q 036079 243 N---LLQEKLKKQLS--GKKFLLVLDDV 265 (1399)
Q Consensus 243 ~---~~~~~l~~~l~--~k~~LiVlDdv 265 (1399)
+ ++...+.+.++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 33444444443 46678899988
No 258
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.56 E-value=0.021 Score=61.11 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=52.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhc----cCCceEEEEeCCCCCHHHHHHHHHHhccCCC-----------CCCc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFEIKAWTCVSEEFDVFRISKSILNSVASDQ-----------CTDK 239 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----------~~~~ 239 (1399)
...+++|+|++|+||||||+.++....... .-..++|++....+...++ .++++.++... ....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346999999999999999999986311111 1246788887665554433 23444443221 0011
Q ss_pred ccHHHHHHHHHHHhc-CCeEEEEEcccCc
Q 036079 240 DDLNLLQEKLKKQLS-GKKFLLVLDDVWN 267 (1399)
Q Consensus 240 ~~~~~~~~~l~~~l~-~k~~LiVlDdv~~ 267 (1399)
.........+.+.+. .+.-+||+|++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 112222333444443 4678899998843
No 259
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.28 E-value=0.028 Score=63.19 Aligned_cols=86 Identities=22% Similarity=0.158 Sum_probs=54.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC----CcccHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT----DKDDLNLLQEKLK 250 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 250 (1399)
..+++.|+|.+|+||||||.+++.... ..=..++|++....++.. .++.++..... ...+.++..+.+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 456899999999999999999986322 222357888887766543 23444432110 2234555555555
Q ss_pred HHhc-CCeEEEEEcccCc
Q 036079 251 KQLS-GKKFLLVLDDVWN 267 (1399)
Q Consensus 251 ~~l~-~k~~LiVlDdv~~ 267 (1399)
...+ .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4443 4567999999843
No 260
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.26 E-value=0.029 Score=63.10 Aligned_cols=85 Identities=22% Similarity=0.155 Sum_probs=53.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC----CcccHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT----DKDDLNLLQEKLK 250 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 250 (1399)
..+++.|+|.+|+||||||.+++.... ..=..++|++....++... +..++..... ...+.+++.+.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 456899999999999999999986432 2223588998877766432 3444432110 1223445555554
Q ss_pred HHh-cCCeEEEEEcccC
Q 036079 251 KQL-SGKKFLLVLDDVW 266 (1399)
Q Consensus 251 ~~l-~~k~~LiVlDdv~ 266 (1399)
... +.+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 443 2456699999984
No 261
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.23 E-value=0.031 Score=63.12 Aligned_cols=85 Identities=19% Similarity=0.157 Sum_probs=55.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCC----CCcccHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQC----TDKDDLNLLQEKLK 250 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~ 250 (1399)
..+++.|+|.+|+||||||.+++.... ..-..++|++....++.. .++.++.... ....+.+++.+.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 446899999999999999999986432 222368899988766543 1344433211 02345566666666
Q ss_pred HHhc-CCeEEEEEcccC
Q 036079 251 KQLS-GKKFLLVLDDVW 266 (1399)
Q Consensus 251 ~~l~-~k~~LiVlDdv~ 266 (1399)
+..+ .+.-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 5554 345699999984
No 262
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.17 E-value=0.022 Score=53.65 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=40.5
Q ss_pred cEEEecCCccc--ccCccccCccccceeeccCccccccch-hhhccccccEEEcCCcc
Q 036079 550 RVFSLHGYCVS--KLPNEIGNLKHLRFLNLSGTEIQILPE-SINSLYNLHTILLENCH 604 (1399)
Q Consensus 550 r~L~L~~n~i~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~ 604 (1399)
.+++.+++.++ .+|..+. .+|++|+|++|+|+.+|. .|..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36788888888 8886554 368888888888888865 45778888888888764
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.13 E-value=0.035 Score=60.84 Aligned_cols=87 Identities=14% Similarity=0.071 Sum_probs=47.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC-CCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-EFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
..++++|+|++|+||||++..++........ ..+..+.... .....+.+....+..+.... ...+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~-~~~~~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE-VCYTKEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC-BCSSHHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE-ecCCHHHHHHHHHH-h
Confidence 4579999999999999999999863322111 1344555432 22333444444444433221 11233344444443 3
Q ss_pred cCCeEEEEEccc
Q 036079 254 SGKKFLLVLDDV 265 (1399)
Q Consensus 254 ~~k~~LiVlDdv 265 (1399)
.+.=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 34457888843
No 264
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.12 E-value=0.019 Score=63.53 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=52.2
Q ss_pred HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh-ccCCceEEEEeCCCCCHHHHHHHHHHhccC----C
Q 036079 160 AIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHFEIKAWTCVSEEFDVFRISKSILNSVAS----D 234 (1399)
Q Consensus 160 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~il~~l~~----~ 234 (1399)
++++.+..- .+...++|+|.+|+|||||++.+.+..... ..+. ++++-+++...-. .++.+.+.. .
T Consensus 163 raID~~~pi-----~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev---~~~~~~~~~~vV~a 233 (422)
T 3ice_A 163 RVLDLASPI-----GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEV---TEMQRLVKGEVVAS 233 (422)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHH---HHHHTTCSSEEEEE
T ss_pred eeeeeeeee-----cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHH---HHHHHHhCeEEEEe
Confidence 455555432 344688999999999999999987632111 1222 3457777664222 123333311 1
Q ss_pred CCCCcccHHHH----HHHHHHHh--cCCeEEEEEcccC
Q 036079 235 QCTDKDDLNLL----QEKLKKQL--SGKKFLLVLDDVW 266 (1399)
Q Consensus 235 ~~~~~~~~~~~----~~~l~~~l--~~k~~LiVlDdv~ 266 (1399)
..+++...... .-.+.+++ +++.+||++||+.
T Consensus 234 tadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 234 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 11122111111 11122233 5899999999993
No 265
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.11 E-value=0.087 Score=57.44 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhcCcchhc-cCCceEEEEeCCCCCHHHHHHHHHHh------ccCCCCCCcccHHHH
Q 036079 173 DDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-HFEIKAWTCVSEEFDVFRISKSILNS------VASDQCTDKDDLNLL 245 (1399)
Q Consensus 173 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~il~~------l~~~~~~~~~~~~~~ 245 (1399)
.....+|+|+|..|+||||||+.+........ ....+..|+...-.-..+....+... +.........+.+.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence 34678999999999999999999876322211 12234444554433333444444322 111111245556666
Q ss_pred HHHHHHHhcC
Q 036079 246 QEKLKKQLSG 255 (1399)
Q Consensus 246 ~~~l~~~l~~ 255 (1399)
.+.+...-.+
T Consensus 108 ~~~l~~l~~g 117 (290)
T 1odf_A 108 QEVLNTIFNN 117 (290)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHhhcc
Confidence 6666555443
No 266
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.10 E-value=0.029 Score=62.90 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=54.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhc---------cC-----CceEEEEeCCCCCHHHHHHHHHHhccCCCC----
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQR---------HF-----EIKAWTCVSEEFDVFRISKSILNSVASDQC---- 236 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---- 236 (1399)
...++.|+|.+|+||||+|.+++....... .. ..++|++....++..++.. +++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457999999999999999999885321111 11 3678998888777666553 3444443210
Q ss_pred ----CCcccHH---HHHHHHHHHhc--CCeEEEEEccc
Q 036079 237 ----TDKDDLN---LLQEKLKKQLS--GKKFLLVLDDV 265 (1399)
Q Consensus 237 ----~~~~~~~---~~~~~l~~~l~--~k~~LiVlDdv 265 (1399)
....+.+ ++...+.+.++ .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0111222 23344444444 35568888887
No 267
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.04 E-value=0.021 Score=58.95 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=33.3
Q ss_pred chhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 154 REKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 154 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
|++.++.+.+.+... ......+|+|+|+.|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~---~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAI---KTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTS---CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---ccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 556777888877653 234568999999999999999999886
No 268
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.03 E-value=0.035 Score=58.98 Aligned_cols=116 Identities=16% Similarity=0.001 Sum_probs=59.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC------------------
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT------------------ 237 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~------------------ 237 (1399)
..+++|+|++|+|||||++.++...... =..++|+.... ...++...+. .++.....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 3689999999999999999998532211 12356665433 3444433322 33221100
Q ss_pred ----CcccHHHHHHHHHHHhc-CC--eEEEEEcccCcc---ChhhHhhhcccCCC--CCCCcEEEEecCCh
Q 036079 238 ----DKDDLNLLQEKLKKQLS-GK--KFLLVLDDVWNE---SYNYWSILSCPFEA--VAPGSKIVVTTRNL 296 (1399)
Q Consensus 238 ----~~~~~~~~~~~l~~~l~-~k--~~LiVlDdv~~~---~~~~~~~l~~~~~~--~~~~s~iivTtr~~ 296 (1399)
...+.+++...+.+.+. .+ +.+||+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01144555555544442 23 349999998532 11122222222211 12467788888764
No 269
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.41 E-value=0.1 Score=57.48 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=53.5
Q ss_pred cccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccC--CceEEEEeCCCCCHHHHHHH--
Q 036079 151 VYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF--EIKAWTCVSEEFDVFRISKS-- 226 (1399)
Q Consensus 151 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~-- 226 (1399)
++|....+..+...+.... ....+.+|+|.|+.|+||||+|+.+..- ..... ..+..+....-.-....+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~l--l~~~~~~~~v~~i~~D~f~~~~~~l~~~~ 144 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKAL--LSRWPDHPNVEVITTDGFLYSNAKLEKQG 144 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHHH--HTTSTTCCCEEEEEGGGGBCCHHHHHHTT
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHHH--hcccCCCCeEEEEeecccccchhhhhhHH
Confidence 3455555555555555432 3456779999999999999999998752 11111 12444554433222222221
Q ss_pred HHHhccCCCCCCcccHHHHHHHHHHHhcCC
Q 036079 227 ILNSVASDQCTDKDDLNLLQEKLKKQLSGK 256 (1399)
Q Consensus 227 il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 256 (1399)
+....+ .....+.+.+.+.+.....++
T Consensus 145 ~~~~~g---~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 145 LMKRKG---FPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp CGGGTT---SGGGBCHHHHHHHHHHHHTTC
T ss_pred HHhhcc---CcccccHHHHHHHHHhhhccc
Confidence 111111 124556666666666665555
No 270
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.39 E-value=0.11 Score=57.62 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=37.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHh
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNS 230 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 230 (1399)
...++.|.|.+|+||||+|.+++.....++ ..++|++.. .+..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 446899999999999999999986432222 457777654 4566666666654
No 271
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.37 E-value=0.0065 Score=61.48 Aligned_cols=108 Identities=13% Similarity=0.033 Sum_probs=50.7
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC-CcccHHHHHHHHHHHhcC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT-DKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~ 255 (1399)
.++.|+|+.|+||||+|.+++.....++ .. ++++..... .+.....+...++..... ...+. ..+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~~-v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~----~~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-KK-VAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERP----EEMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-CE-EEEEEEC-------CCCEECC----CEECEEESSG----GGGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-Ce-EEEEeeccc--cccCcccEEecCCCceeeEEECCH----HHHHHHhcC
Confidence 5789999999999999977765322222 22 333322211 000000011111110000 00111 112233334
Q ss_pred CeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC
Q 036079 256 KKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN 295 (1399)
Q Consensus 256 k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~ 295 (1399)
+.-+|++|.+...+.+..+.+ ..+.+ .+..|++|.++
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l-~~l~~--~~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVV-KDLLD--RGIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEEES
T ss_pred CCCEEEEECcccCCHHHHHHH-HHHHH--CCCCEEEEeec
Confidence 567999999976543333333 22222 27789998885
No 272
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.30 E-value=0.066 Score=60.34 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=52.5
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccC---C-ceEEEEeCCCCCHHHHHHHHHHhccCCC-----------CCC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---E-IKAWTCVSEEFDVFRISKSILNSVASDQ-----------CTD 238 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f---~-~~~wv~~~~~~~~~~~~~~il~~l~~~~-----------~~~ 238 (1399)
+...++.|+|++|+|||||++.++......... . .++|++....+....+ ..+++..+... ...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 356799999999999999999998632111111 2 3488887655443332 33444332210 001
Q ss_pred cccHHHHHHHHHHHhc------CCeEEEEEcccCc
Q 036079 239 KDDLNLLQEKLKKQLS------GKKFLLVLDDVWN 267 (1399)
Q Consensus 239 ~~~~~~~~~~l~~~l~------~k~~LiVlDdv~~ 267 (1399)
.....++...+...++ .+.-+||+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 1222333444444443 4678999998843
No 273
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.27 E-value=0.11 Score=54.83 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=30.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcch---hc-cCCceEEEEeCCCCC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRV---QR-HFEIKAWTCVSEEFD 219 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~---~~-~f~~~~wv~~~~~~~ 219 (1399)
...+++|+|++|+|||||++.++..... .. .-..++|+.......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 4579999999999999999999742111 11 123467777655433
No 274
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.21 E-value=0.068 Score=61.48 Aligned_cols=90 Identities=21% Similarity=0.267 Sum_probs=50.8
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC-HHHHHHHHHHhccC-------CCCCCcccHHH----
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD-VFRISKSILNSVAS-------DQCTDKDDLNL---- 244 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~-------~~~~~~~~~~~---- 244 (1399)
+.++|+|.+|+||||||..+....... .-+..+++.+++..+ ..+++.++.+.=.. ....++.....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 468999999999999999998742221 223456777776653 44555545432000 01112211111
Q ss_pred HHHHHHHHh---cCCeEEEEEcccCc
Q 036079 245 LQEKLKKQL---SGKKFLLVLDDVWN 267 (1399)
Q Consensus 245 ~~~~l~~~l---~~k~~LiVlDdv~~ 267 (1399)
..-.+.+++ +++++|+++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 011223332 58999999999944
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.07 E-value=0.15 Score=55.91 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=48.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCH--HHHHHHHHHhccCCC--CCCcccHHH-HHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDV--FRISKSILNSVASDQ--CTDKDDLNL-LQEK 248 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~il~~l~~~~--~~~~~~~~~-~~~~ 248 (1399)
...++++|+|++|+||||++..++... ...-..+.++.... +.. .+-+...++..+.+. .....+... ..+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l--~~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF--VDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH--HhcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 356899999999999999999998632 22212344555432 222 122333444433221 101122222 2334
Q ss_pred HHHHhcCCeEEEEEcccC
Q 036079 249 LKKQLSGKKFLLVLDDVW 266 (1399)
Q Consensus 249 l~~~l~~k~~LiVlDdv~ 266 (1399)
+...+..+.-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 544455555588889663
No 276
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.00 E-value=0.021 Score=63.09 Aligned_cols=54 Identities=15% Similarity=0.011 Sum_probs=34.9
Q ss_pred HHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh-ccCCceEEEEeCCCC
Q 036079 159 EAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHFEIKAWTCVSEEF 218 (1399)
Q Consensus 159 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~ 218 (1399)
-++++.+..- .+..-++|+|.+|+|||+|+.++++..... ..+. ++++-+++..
T Consensus 163 iraID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~ 217 (427)
T 3l0o_A 163 TRLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP 217 (427)
T ss_dssp HHHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred chhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence 4667777532 344567999999999999999988732211 1222 3456666553
No 277
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.94 E-value=0.18 Score=62.57 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=57.8
Q ss_pred cCCccccchhhHHHHHHHHhccCc-------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC
Q 036079 147 NEAKVYGREKDKEAIVELLLRDDL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD 219 (1399)
Q Consensus 147 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1399)
.-..+.|.++.++++.+.+.-.-. -+-...+-+.++|++|.|||.+|+++++. .... ++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEecc---
Confidence 345577888888877776542110 01223456789999999999999999983 2222 233321
Q ss_pred HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCc
Q 036079 220 VFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN 267 (1399)
Q Consensus 220 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~ 267 (1399)
. +++....+ .....+.+.+...-+..+++|++|+++.
T Consensus 545 -~----~l~s~~vG------ese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 -P----ELLTMWFG------ESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp -H----HHHTTTCS------SCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred -c----hhhccccc------hHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 1 23322222 1222233333333346789999999864
No 278
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.93 E-value=0.044 Score=56.88 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=28.0
Q ss_pred hHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 157 DKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 157 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
-.+++.+.+... .....+|+|+|+.|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555321 24567999999999999999999986
No 279
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.86 E-value=0.39 Score=55.15 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+++|.|+|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 578999999999999999988876
No 280
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.76 E-value=0.11 Score=59.20 Aligned_cols=91 Identities=18% Similarity=0.130 Sum_probs=50.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchh----ccCCceEEEEeCCCCCHHHHHHHHHHhccCCCC-----------CCc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFEIKAWTCVSEEFDVFRISKSILNSVASDQC-----------TDK 239 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----------~~~ 239 (1399)
...++.|+|++|+|||||+..++-..... ..-..++|++....++...+ +++++.++.... ...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 44699999999999999999775211111 12245788887666555443 335555543210 011
Q ss_pred ccHHHHHHHHHHHh-cCCeEEEEEcccC
Q 036079 240 DDLNLLQEKLKKQL-SGKKFLLVLDDVW 266 (1399)
Q Consensus 240 ~~~~~~~~~l~~~l-~~k~~LiVlDdv~ 266 (1399)
....+....+.+.+ ..+.-+||+|.+.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 11112222222322 3467788999873
No 281
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.73 E-value=0.057 Score=59.01 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=28.4
Q ss_pred HHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 158 KEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 158 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+++++..+..... ......+|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322 344568999999999999999999986
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.70 E-value=0.029 Score=56.55 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 283
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.53 E-value=0.039 Score=56.42 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...+++|+|++|+||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4478999999999999999999873
No 284
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.39 E-value=0.042 Score=69.60 Aligned_cols=52 Identities=25% Similarity=0.185 Sum_probs=37.6
Q ss_pred cCCccccchhhHHHHHHHHhccCcC-------CCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 147 NEAKVYGREKDKEAIVELLLRDDLR-------ADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 147 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.-.+++|.+..++++.+.+...... .-...+.+.++|++|+|||+||+.++.
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 3456788888888888776421100 112345688999999999999999997
No 285
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.29 E-value=0.39 Score=55.17 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=46.8
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC-CCHHHHHHHHHHhccCCCC--CCcccHHHHH-HHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE-FDVFRISKSILNSVASDQC--TDKDDLNLLQ-EKL 249 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~--~~~~~~~~~~-~~l 249 (1399)
...++|.++|++|+||||++..++.....+ . ..+..+.+... ....+-+....+..+.+.. ....+...+. ..+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G-~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKR-G-YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHT-T-CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHc-C-CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 357899999999999999999998633222 1 22444444321 1223333444444433211 1122232322 333
Q ss_pred HHHhcCCeEEEEEcccC
Q 036079 250 KKQLSGKKFLLVLDDVW 266 (1399)
Q Consensus 250 ~~~l~~k~~LiVlDdv~ 266 (1399)
........=++|+|-..
T Consensus 173 ~~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HHTTTTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 33332344466788664
No 286
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.23 E-value=0.051 Score=55.96 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+|+|+|++|.||||+|+.++.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 287
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.22 E-value=0.082 Score=62.51 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=56.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHH--------
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKL-------- 249 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l-------- 249 (1399)
.+.|.|.+|+||||++..+.......+. ..++.+ ........+ +.+.++. ...........-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~-a~T~~Aa~~----l~~~~~~----~~~T~h~~~~~~~~~~~~~~ 116 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE-TGIILA-APTHAAKKI----LSKLSGK----EASTIHSILKINPVTYEENV 116 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEE-ESSHHHHHH----HHHHHSS----CEEEHHHHHTEEEEECSSCE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEe-cCcHHHHHH----HHhhhcc----chhhHHHHhccCcccccccc
Confidence 8999999999999999998864322221 223333 222211111 1111211 111211111000
Q ss_pred -----HHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhh
Q 036079 250 -----KKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGV 298 (1399)
Q Consensus 250 -----~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~ 298 (1399)
......+.-+||+|++...+...+..+...++ .+.++++..-..+.
T Consensus 117 ~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Ql 167 (459)
T 3upu_A 117 LFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQI 167 (459)
T ss_dssp EEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTSC
T ss_pred hhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHHc
Confidence 00001134589999998877666776666553 56678777665443
No 288
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.22 E-value=0.036 Score=55.50 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.2
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|+|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 289
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.21 E-value=0.042 Score=55.49 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 290
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.16 E-value=0.056 Score=61.80 Aligned_cols=49 Identities=29% Similarity=0.317 Sum_probs=36.1
Q ss_pred ccccchhhHHHHHHHHhcc----C-----cCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 150 KVYGREKDKEAIVELLLRD----D-----LRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~----~-----~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.++|.+..++.+...+... . .......+.+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4789999998888877310 0 00112345789999999999999999997
No 291
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.15 E-value=0.042 Score=55.27 Aligned_cols=20 Identities=50% Similarity=0.795 Sum_probs=18.7
Q ss_pred EEEEEECCCCChHHHHHHHH
Q 036079 177 SVISINGMGGVGKTTLAQLV 196 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~ 196 (1399)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 292
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.11 E-value=0.048 Score=55.03 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999985
No 293
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.10 E-value=0.044 Score=56.36 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.++|+|+|++|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 294
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.07 E-value=0.07 Score=57.26 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=29.0
Q ss_pred HHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 158 KEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 158 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+++.+.+..... ......+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322 345568999999999999999999986
No 295
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.97 E-value=0.098 Score=57.80 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=32.2
Q ss_pred ccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 152 YGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 152 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
|+-+.-.+++.+.+...- ..+....|.|+|++|+||||+|+.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 445556666777664321 223456789999999999999999986
No 296
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.97 E-value=1.1 Score=52.50 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=36.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHh
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNS 230 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 230 (1399)
...++.|.|.+|+||||+|.+++....... =..++|++.. .+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 446899999999999999999987432211 1246776654 4566777666543
No 297
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.97 E-value=0.21 Score=57.80 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=28.5
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS 215 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 215 (1399)
...++|+|+|.+|+||||+|..++.....+.. ..+..+++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G-~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHK-KKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSC-CCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEEecC
Confidence 35789999999999999999999863322212 234455544
No 298
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.96 E-value=0.19 Score=57.53 Aligned_cols=65 Identities=25% Similarity=0.253 Sum_probs=44.3
Q ss_pred HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC-HHHHHHHHHHh
Q 036079 160 AIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD-VFRISKSILNS 230 (1399)
Q Consensus 160 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~ 230 (1399)
++++.|..- .+..-++|+|.+|+|||+|+.++++.. .+.+-+.++++-+++... ..++++++.+.
T Consensus 142 r~ID~l~pi-----gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-----AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-----ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-----ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 556666532 244578999999999999999998631 122335677888887753 55666666654
No 299
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.93 E-value=0.091 Score=57.99 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=29.5
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE 216 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 216 (1399)
++.+||+|+|-|||||||.|..++... ...=..+.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL--A~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH--HHCCCeEEEEecCC
Confidence 467999999999999999998887632 22222466677664
No 300
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.69 E-value=0.057 Score=55.94 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...+++|+|+.|+||||+++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4468999999999999999999863
No 301
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.68 E-value=0.044 Score=54.88 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|+|+|++|+||||+|+.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 302
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.61 E-value=0.075 Score=53.37 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=26.8
Q ss_pred HHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 158 KEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 158 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+..+..++.. -++.+.+.|+|++|+||||+|.++++
T Consensus 45 ~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 5556666642 22345689999999999999999887
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.60 E-value=0.079 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|++|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 304
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.60 E-value=0.19 Score=53.73 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=28.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE 216 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 216 (1399)
...++.|.|++|+||||+|.+++.... ..=..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 346899999999999999988875321 1223567776544
No 305
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.60 E-value=0.17 Score=68.67 Aligned_cols=85 Identities=21% Similarity=0.146 Sum_probs=55.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC----CcccHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT----DKDDLNLLQEKLK 250 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 250 (1399)
+.+++.|+|++|+|||+||.++..... ..=..++|+++.+.++... ++.++..... ..+..++..+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 557999999999999999999987432 2223577888877776655 3444422110 2233345555555
Q ss_pred HHhc-CCeEEEEEcccC
Q 036079 251 KQLS-GKKFLLVLDDVW 266 (1399)
Q Consensus 251 ~~l~-~k~~LiVlDdv~ 266 (1399)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 577899999984
No 306
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.59 E-value=0.051 Score=55.16 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+.|.|+|++|+||||+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 307
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.58 E-value=0.31 Score=55.85 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..++++|+|++|+||||++..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999863
No 308
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.57 E-value=0.058 Score=55.50 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|+||||+|+.++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999986
No 309
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.53 E-value=0.06 Score=55.09 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999986
No 310
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.50 E-value=1.5 Score=51.49 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=34.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
...++.|.|.+|+||||+|.+++....... =..++|++.. .+..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESS--SCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHH
Confidence 446899999999999999999987433221 1246776644 34556665554
No 311
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.43 E-value=0.29 Score=53.44 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=47.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHHHHHhccCCC--CCCcccHHHHHHHHHHH
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKSILNSVASDQ--CTDKDDLNLLQEKLKKQ 252 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~--~~~~~~~~~~~~~l~~~ 252 (1399)
.++++|+|.+|+||||++..++.... ..=..+.++...... ...+.+....+..+... .....+..++.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 67999999999999999999986322 222235566554332 22333344444433321 11123334443333333
Q ss_pred hc-CCeEEEEEccc
Q 036079 253 LS-GKKFLLVLDDV 265 (1399)
Q Consensus 253 l~-~k~~LiVlDdv 265 (1399)
++ .+-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 33 33337888875
No 312
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.42 E-value=0.069 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=20.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|.|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346999999999999999997553
No 313
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.38 E-value=0.04 Score=55.35 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.7
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
|.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999875
No 314
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.29 E-value=0.46 Score=52.65 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=22.6
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
....+++|+|+.|+||||+++.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999986
No 315
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.27 E-value=0.069 Score=55.23 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999985
No 316
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.17 E-value=0.057 Score=54.80 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999985
No 317
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.16 E-value=0.062 Score=55.43 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+|+|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 318
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.16 E-value=0.077 Score=54.02 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.2
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5889999999999999999974
No 319
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.13 E-value=0.073 Score=57.14 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999976
No 320
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.13 E-value=0.32 Score=53.90 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=36.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSV 231 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 231 (1399)
...++.|.|.+|+||||+|.+++..... .=..++|++. ..+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 3468999999999999999999874322 1134566554 456677777766543
No 321
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.09 E-value=0.082 Score=53.44 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999985
No 322
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.08 E-value=0.061 Score=55.56 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++|+|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999986
No 323
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.06 E-value=0.062 Score=60.44 Aligned_cols=110 Identities=12% Similarity=0.185 Sum_probs=59.1
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH-HHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR-ISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 255 (1399)
.+++|+|+.|.||||+.+.+... ........++ .+........ -......+..... .. ....+.+...+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~-t~ed~~e~~~~~~~~~v~q~~~~~--~~---~~~~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHIL-TIEDPIEFVHESKKCLVNQREVHR--DT---LGFSEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTT--TB---SCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEE-EccCcHHhhhhccccceeeeeecc--cc---CCHHHHHHHHhhh
Confidence 59999999999999999998752 2111122222 2222111000 0000000000000 11 1234478888888
Q ss_pred CeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhh
Q 036079 256 KKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVT 299 (1399)
Q Consensus 256 k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~ 299 (1399)
.+=+|++|+..+. ..++.+... ...|.-|++|+......
T Consensus 196 ~PdvillDEp~d~--e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRDL--ETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCSH--HHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCCH--HHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 9999999999643 444443333 22466688888875543
No 324
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.06 E-value=0.072 Score=53.94 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
....|+|+|++|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 325
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.05 E-value=0.066 Score=54.74 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.4
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|+|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 326
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.04 E-value=0.064 Score=54.11 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.++|.|+|++|+||||+|+.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 327
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.97 E-value=0.3 Score=53.46 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..++++|+|.+|+||||++..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999863
No 328
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.97 E-value=0.08 Score=56.71 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
++++|.|++|+||||+|+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 329
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.95 E-value=0.18 Score=50.77 Aligned_cols=85 Identities=21% Similarity=0.185 Sum_probs=47.2
Q ss_pred cCCCCcccEEEecCC-cccc-----cCccccCccccceeeccCcccc-----ccchhhhccccccEEEcCCccccc----
Q 036079 543 LLNLPRLRVFSLHGY-CVSK-----LPNEIGNLKHLRFLNLSGTEIQ-----ILPESINSLYNLHTILLENCHRLK---- 607 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n-~i~~-----lp~~~~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~~l~---- 607 (1399)
+.+-+.|+.|+|++| .|.. +-+.+..-+.|+.|+|++|.|. .+-+.+..-+.|++|+|++|..-.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 455566777777764 5541 3344555566777777777665 234445555667777777643211
Q ss_pred cchhhhcccCcccEEEcCCC
Q 036079 608 KLCKDMGNLIKLHHLRNSNV 627 (1399)
Q Consensus 608 ~lp~~i~~L~~L~~L~l~~n 627 (1399)
.+-..+..-+.|++|++++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 12223344455666666644
No 330
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.90 E-value=0.082 Score=52.93 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 036079 178 VISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
No 331
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.89 E-value=0.089 Score=54.48 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=22.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
....+|+|+|++|+||||+|+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999986
No 332
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.85 E-value=0.072 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+|+|.|++|+||||+|+.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.82 E-value=0.081 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 334
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.82 E-value=0.088 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=23.0
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+.++|.|.|++|+||+|.|+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999986
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.82 E-value=0.11 Score=52.78 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.8
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
....+|.|.|++|+||||+|+.++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35578999999999999999999873
No 336
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.81 E-value=0.085 Score=54.65 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999863
No 337
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.78 E-value=0.11 Score=53.71 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=22.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
....+|+|.|++|+||||+|+.++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999986
No 338
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.78 E-value=0.086 Score=54.80 Aligned_cols=24 Identities=46% Similarity=0.389 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 447999999999999999999986
No 339
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.76 E-value=0.076 Score=54.18 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.6
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|+|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 340
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.74 E-value=0.5 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.4
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...++++|+|.+|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999986
No 341
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.68 E-value=0.72 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...++|+|+|.+|+||||++..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999986
No 342
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.66 E-value=0.069 Score=54.75 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999975
No 343
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.63 E-value=0.095 Score=54.07 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.7
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999986
No 344
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.63 E-value=0.071 Score=53.49 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.|+|.|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 345
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.62 E-value=0.3 Score=51.64 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=47.8
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcch-hccC-CceEEEEeCCCCCHHHHHHHHHHhccCCCCC-----------------
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRV-QRHF-EIKAWTCVSEEFDVFRISKSILNSVASDQCT----------------- 237 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----------------- 237 (1399)
+.+.|.|+.|.||||+...+.-+... .... ...+.+......-..++...+...++.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 47899999999999876655432111 1111 1233333333333344445555444322100
Q ss_pred --CcccHHHHHHHHHHHhcCCeEEEEEcccCcc
Q 036079 238 --DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE 268 (1399)
Q Consensus 238 --~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~ 268 (1399)
.....+.+.+.+...+++ --+||+|+++..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~~ 188 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHER 188 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTSC
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCccC
Confidence 012345555666554433 347899999763
No 346
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.62 E-value=0.16 Score=47.61 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=40.7
Q ss_pred ceeeccCcccc--ccchhhhccccccEEEcCCccccccchhh-hcccCcccEEEcCCCc
Q 036079 573 RFLNLSGTEIQ--ILPESINSLYNLHTILLENCHRLKKLCKD-MGNLIKLHHLRNSNVD 628 (1399)
Q Consensus 573 ~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~n~ 628 (1399)
.+++.++++++ .+|..+. .+|++|+|++| .+..+|.. |..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 47888888888 8886543 46889999985 56667654 7888889999888886
No 347
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.57 E-value=0.32 Score=56.00 Aligned_cols=65 Identities=25% Similarity=0.215 Sum_probs=44.9
Q ss_pred HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC-HHHHHHHHHHh
Q 036079 160 AIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD-VFRISKSILNS 230 (1399)
Q Consensus 160 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~ 230 (1399)
++++.|..- .+..-++|+|.+|+|||+|+.++++.. .+.+-+.++++-+++... ..+++.++.+.
T Consensus 154 rvID~l~pi-----gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 154 KVVNLLAPY-----RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTHHHHSCC-----CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred eEeeeeccc-----ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 455666432 344568999999999999999998731 123446788888888764 55677776653
No 348
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.56 E-value=0.16 Score=51.04 Aligned_cols=90 Identities=19% Similarity=0.148 Sum_probs=67.5
Q ss_pred HhhhcCCCCcccEEEecCCcccc-----cCccccCccccceeeccCcccc-----ccchhhhccccccEEEcCCcc--cc
Q 036079 539 VLQMLLNLPRLRVFSLHGYCVSK-----LPNEIGNLKHLRFLNLSGTEIQ-----ILPESINSLYNLHTILLENCH--RL 606 (1399)
Q Consensus 539 ~~~~~~~l~~Lr~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~--~l 606 (1399)
+.+.+..-+.|+.|+|++|.|.. +-+.+..-+.|++|+|++|.|. .+-+.+..-+.|++|+|++|. .+
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence 44557788899999999999873 4455666789999999999998 344566677789999998642 22
Q ss_pred c-----cchhhhcccCcccEEEcCCCc
Q 036079 607 K-----KLCKDMGNLIKLHHLRNSNVD 628 (1399)
Q Consensus 607 ~-----~lp~~i~~L~~L~~L~l~~n~ 628 (1399)
+ .+...+..-+.|+.|+++.|.
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2 234456666889999998765
No 349
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.54 E-value=0.1 Score=56.30 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 350
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.51 E-value=0.12 Score=50.50 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999999985
No 351
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.47 E-value=0.096 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++++|+|..|+||||++..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 352
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.46 E-value=0.11 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+|+|.|++|+||||+|+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 353
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.46 E-value=0.1 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 354
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.45 E-value=0.098 Score=53.86 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+|+|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999986
No 355
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.38 E-value=0.084 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+|+|.|++|+||||+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 356
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.33 E-value=0.14 Score=54.34 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+|+|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 557899999999999999999985
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.32 E-value=0.1 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..+|+|.|++|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 358
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.27 E-value=0.11 Score=57.22 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
....+|+|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3557999999999999999999985
No 359
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.27 E-value=0.091 Score=54.27 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+|+|.|+.|+||||+|+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
No 360
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.25 E-value=0.07 Score=54.05 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|+|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 361
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.24 E-value=0.099 Score=55.87 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|++|+||||+++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 362
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.18 E-value=0.11 Score=56.96 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999999986
No 363
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.17 E-value=0.11 Score=53.89 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999985
No 364
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.13 E-value=0.21 Score=57.48 Aligned_cols=98 Identities=18% Similarity=0.207 Sum_probs=55.3
Q ss_pred HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHH-HHhcCcchhccCCc-eEEEEeCCCCC-HHHHHHHHHHhccCC--
Q 036079 160 AIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQ-LVYNDDRVQRHFEI-KAWTCVSEEFD-VFRISKSILNSVASD-- 234 (1399)
Q Consensus 160 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~-~~~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~il~~l~~~-- 234 (1399)
+.++.+..- .+..-++|+|.+|+|||+||. .+++.. .-+. ++++-+++... +.++.+++.+.=...
T Consensus 151 raID~l~Pi-----grGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPI-----GRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCC-----BTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eeccccccc-----ccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 455555432 244567999999999999964 666622 2443 46777887653 455566655421111
Q ss_pred -----CCCCcccHHH----HHHHHHHHh--cCCeEEEEEcccC
Q 036079 235 -----QCTDKDDLNL----LQEKLKKQL--SGKKFLLVLDDVW 266 (1399)
Q Consensus 235 -----~~~~~~~~~~----~~~~l~~~l--~~k~~LiVlDdv~ 266 (1399)
..+++..... ..-.+.+++ +++.+||++||+.
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1112111111 111233333 4799999999983
No 365
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.10 E-value=0.12 Score=51.86 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+|+|+|+.|+||||+|+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999986
No 366
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.10 E-value=0.51 Score=54.81 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=41.5
Q ss_pred HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC-HHHHHHHH
Q 036079 160 AIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD-VFRISKSI 227 (1399)
Q Consensus 160 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 227 (1399)
++++.|..- .+...++|.|.+|+|||+|+.++++. .+-+.++++-+++... +.+++.++
T Consensus 216 rvID~l~Pi-----gkGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQ-----AKGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCE-----ETTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCc-----ccCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 556666532 24457899999999999999998762 2335678888888775 44555554
No 367
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.07 E-value=0.13 Score=54.98 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+|+|.|+.|+||||+++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 447999999999999999999875
No 368
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.04 E-value=0.093 Score=54.76 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999985
No 369
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.04 E-value=0.11 Score=53.99 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|+|||||++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 446999999999999999999975
No 370
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.00 E-value=0.1 Score=53.91 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+|+|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999985
No 371
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.99 E-value=0.38 Score=58.10 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=56.4
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHH-HHh--
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLK-KQL-- 253 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l-- 253 (1399)
+++.|+|.+|+||||++..+....... ...+.+.+........ +.+.++. .......+..... .+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~----L~e~~~~----~a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARR----LGEVTGR----TASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHH----HHHHHTS----CEEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHH----hHhhhcc----cHHHHHHHHcCCcchhhhh
Confidence 588999999999999999988632211 1234444332222222 2222221 1222221110000 000
Q ss_pred ---cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh
Q 036079 254 ---SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL 296 (1399)
Q Consensus 254 ---~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~ 296 (1399)
..+.-+||+|++...+...+..+...++ .+.++|+.--..
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~~ 316 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDTD 316 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECTT
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEeccc
Confidence 0123489999998777677777766654 566777765543
No 372
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.99 E-value=0.24 Score=57.06 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=55.7
Q ss_pred HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHH-HHhcCcchhccCCc-eEEEEeCCCCC-HHHHHHHHHHhcc----
Q 036079 160 AIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQ-LVYNDDRVQRHFEI-KAWTCVSEEFD-VFRISKSILNSVA---- 232 (1399)
Q Consensus 160 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~-~~~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~il~~l~---- 232 (1399)
+.++.+..- .+..-++|+|.+|+|||+||. .+++.. .-+. ++++-+++... +.++.+.+.+.=.
T Consensus 164 raID~l~Pi-----grGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPI-----GRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCE-----ETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred ccccccccc-----ccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 455666432 234567999999999999964 666632 2443 46777887653 4556666654211
Q ss_pred ---CCCCCCcccHHH----HHHHHHHHh--cCCeEEEEEcccC
Q 036079 233 ---SDQCTDKDDLNL----LQEKLKKQL--SGKKFLLVLDDVW 266 (1399)
Q Consensus 233 ---~~~~~~~~~~~~----~~~~l~~~l--~~k~~LiVlDdv~ 266 (1399)
....+++..... ..-.+.+++ +++.+||++||+.
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 011112211111 111233344 4799999999984
No 373
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.98 E-value=0.083 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
++|+|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 374
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.98 E-value=0.23 Score=50.78 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 375
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.96 E-value=0.53 Score=48.53 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...+|+|.|+.|+||||+++.+...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999873
No 376
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.96 E-value=0.11 Score=54.73 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=20.4
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|+|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999985
No 377
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.93 E-value=0.39 Score=55.58 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
....+|.|+|++|+||||+|+.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999986
No 378
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.92 E-value=0.13 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+|+|.|++|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999986
No 379
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.90 E-value=0.57 Score=54.28 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=29.8
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD 219 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1399)
....+++|+|..|+||||+++.++.- .+ .....+++.....+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 35679999999999999999999863 22 123455554444443
No 380
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.89 E-value=0.21 Score=51.95 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 381
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.81 E-value=0.095 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 382
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.77 E-value=0.081 Score=53.48 Aligned_cols=23 Identities=43% Similarity=0.460 Sum_probs=16.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 383
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.73 E-value=0.12 Score=51.46 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 384
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.70 E-value=0.13 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 385
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.59 E-value=0.15 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
....|+|+|.+|+|||||+.++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999863
No 386
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.49 E-value=0.12 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...|.|.|++|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 387
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.40 E-value=0.4 Score=65.18 Aligned_cols=86 Identities=22% Similarity=0.152 Sum_probs=57.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC----CcccHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT----DKDDLNLLQEKLK 250 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 250 (1399)
..+++.|+|++|+||||||.+++.... ..=..++|++.....+... ++.++..... ...+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 457999999999999999999987432 2223578888777666432 4555543211 2345566666665
Q ss_pred HHh-cCCeEEEEEcccCc
Q 036079 251 KQL-SGKKFLLVLDDVWN 267 (1399)
Q Consensus 251 ~~l-~~k~~LiVlDdv~~ 267 (1399)
+.. +.+.-+||+|.+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 544 35667999999854
No 388
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.37 E-value=0.15 Score=55.61 Aligned_cols=25 Identities=36% Similarity=0.709 Sum_probs=22.0
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
....+|+|+|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999973
No 389
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.34 E-value=0.39 Score=48.86 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=30.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.|+|-|.-|+||||.++.+++. .+..-..+++..-.......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 4788999999999999999873 333323344444333334445555544
No 390
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.34 E-value=0.14 Score=54.83 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+|+|+|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 391
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.30 E-value=0.12 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 392
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.30 E-value=0.26 Score=54.43 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
....+|+|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999886
No 393
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.19 E-value=0.13 Score=52.49 Aligned_cols=21 Identities=43% Similarity=0.779 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 394
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.18 E-value=0.2 Score=57.52 Aligned_cols=50 Identities=28% Similarity=0.335 Sum_probs=35.8
Q ss_pred CccccchhhHHHHHHHHhcc--------CcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 149 AKVYGREKDKEAIVELLLRD--------DLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++|.++.++.+..++... ........+-+.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45889888888887766321 000112345688999999999999999987
No 395
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.04 E-value=0.3 Score=55.61 Aligned_cols=88 Identities=11% Similarity=0.166 Sum_probs=51.2
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCC----ceEEEEeCCCC-CHHHHHHHHHHh--cc-----CCCCCCcccHHH
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFE----IKAWTCVSEEF-DVFRISKSILNS--VA-----SDQCTDKDDLNL 244 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~il~~--l~-----~~~~~~~~~~~~ 244 (1399)
.-++|.|.+|+|||+|+.++++.... +-+ .++++-+++.. .+.++..++.+. +. ....+++.....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 44689999999999999999874322 123 56677777665 355566665442 10 011112111111
Q ss_pred ----HHHHHHHHh---cCCeEEEEEcccC
Q 036079 245 ----LQEKLKKQL---SGKKFLLVLDDVW 266 (1399)
Q Consensus 245 ----~~~~l~~~l---~~k~~LiVlDdv~ 266 (1399)
..-.+.+++ +++.+|+++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 112234444 3799999999993
No 396
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.02 E-value=0.29 Score=49.81 Aligned_cols=113 Identities=9% Similarity=-0.007 Sum_probs=54.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCC-cccHHHHHHHHHHHh
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTD-KDDLNLLQEKLKKQL 253 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~l~~~l 253 (1399)
...+..++|..|.||||.|...+.....++ .. ++.+.... +.+.-...+.+.++...... ..+.+ .+.+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g-~k-Vli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAK-QH-AIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTT-CC-EEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCC-CE-EEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 347889999999999999988887433222 23 33332211 11111223444443322100 01111 222333
Q ss_pred cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhh
Q 036079 254 SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGV 298 (1399)
Q Consensus 254 ~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~ 298 (1399)
.++-=+|++|.+.-.+.+..+.+.. +.+ .|..||+|.++.+.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~-l~~--~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQV-LAN--RGYRVIVAGLDQDF 140 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHH-HHH--TTCEEEEEECSBCT
T ss_pred hcCCCEEEEECcccCCHHHHHHHHH-Hhh--CCCEEEEEeccccc
Confidence 3333499999996654444444332 222 37789999997543
No 397
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.00 E-value=0.38 Score=55.54 Aligned_cols=102 Identities=22% Similarity=0.271 Sum_probs=56.1
Q ss_pred HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHH-HHHhcCcchh----ccCC-ceEEEEeCCCCC-HHHHHHHHHHhcc
Q 036079 160 AIVELLLRDDLRADDGFSVISINGMGGVGKTTLA-QLVYNDDRVQ----RHFE-IKAWTCVSEEFD-VFRISKSILNSVA 232 (1399)
Q Consensus 160 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~~~~~~~~~----~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~ 232 (1399)
+.++.|..- .+..-++|+|.+|+|||+|| ..+++..... .+-+ .++++-+++... +.++.+.+.+.=.
T Consensus 151 raID~l~Pi-----grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPI-----GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCC-----BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeecccccc-----ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 455666432 23456799999999999995 4566532210 1234 367788887753 4556666554210
Q ss_pred -------CCCCCCcccHHHH----HHHHHHHh--cCCeEEEEEcccC
Q 036079 233 -------SDQCTDKDDLNLL----QEKLKKQL--SGKKFLLVLDDVW 266 (1399)
Q Consensus 233 -------~~~~~~~~~~~~~----~~~l~~~l--~~k~~LiVlDdv~ 266 (1399)
....+++...... .-.+.+++ +++.+||++||+.
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 0111122111111 11233333 4799999999983
No 398
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.99 E-value=0.18 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+|+|.|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999999986
No 399
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.97 E-value=0.13 Score=53.80 Aligned_cols=41 Identities=27% Similarity=0.265 Sum_probs=29.6
Q ss_pred cchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 153 GREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 153 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+.++..+.+.+.+.. ...++|+|+|.+|+|||||+.++...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334445555555532 25689999999999999999998863
No 400
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.91 E-value=0.14 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..+|+|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 401
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.88 E-value=0.3 Score=54.15 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=30.8
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC
Q 036079 173 DDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD 219 (1399)
Q Consensus 173 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1399)
....++|+|+|-||+||||+|..++.... ..=..++-+++....+
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~~~ 82 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDPKHD 82 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESSSCC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHH--HCCCeEEEEeCCCCCC
Confidence 34668999999999999999998886332 2222466677665443
No 402
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.86 E-value=0.6 Score=54.47 Aligned_cols=58 Identities=10% Similarity=0.174 Sum_probs=40.2
Q ss_pred HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHH
Q 036079 160 AIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKS 226 (1399)
Q Consensus 160 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~ 226 (1399)
++++.|..- .+..-++|.|.+|+|||+|+.++++. .+-+.++++-+++.. .+.+++.+
T Consensus 221 rvID~l~Pi-----grGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPV-----TKGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCc-----cCCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 556666532 34467899999999999999999863 233567888888774 34444444
No 403
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.80 E-value=0.14 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...|+|.|++|+||||+|+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 404
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.75 E-value=0.18 Score=55.28 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 405
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.70 E-value=0.39 Score=64.46 Aligned_cols=86 Identities=21% Similarity=0.127 Sum_probs=56.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC----CcccHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT----DKDDLNLLQEKLK 250 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 250 (1399)
..+++.|+|.+|+||||||.+++..... .=..++|++.....+... ++.++..... ...+.+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 4579999999999999999999874322 224688988877766531 4455433211 2344556666555
Q ss_pred HHh-cCCeEEEEEcccCc
Q 036079 251 KQL-SGKKFLLVLDDVWN 267 (1399)
Q Consensus 251 ~~l-~~k~~LiVlDdv~~ 267 (1399)
... +.+.-+||+|.+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 444 34667999999854
No 406
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.67 E-value=1.4 Score=62.40 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=48.2
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGK 256 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 256 (1399)
+-|.++|++|+|||++|+.+.... ..+ ..+.++.+...+...++..+-..+.......+.- ..-.-.+|
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~-------~~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT-------LLPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE-------EEEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc-------ccCCCCCc
Confidence 467899999999999997776532 122 3456778887777776666555443211000000 00001367
Q ss_pred eEEEEEcccCc
Q 036079 257 KFLLVLDDVWN 267 (1399)
Q Consensus 257 ~~LiVlDdv~~ 267 (1399)
+.++++||+.-
T Consensus 1337 ~~VlFiDEinm 1347 (2695)
T 4akg_A 1337 NLVLFCDEINL 1347 (2695)
T ss_dssp CEEEEEETTTC
T ss_pred eEEEEeccccc
Confidence 89999999643
No 407
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.67 E-value=0.12 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...|.|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 408
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.63 E-value=0.2 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 409
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.62 E-value=0.21 Score=54.92 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++|+|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999997
No 410
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.54 E-value=0.16 Score=52.95 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 411
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=89.53 E-value=0.97 Score=51.67 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=33.3
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.++|....+.++.+.+... ...... |.|.|.+|+|||++|+.++.
T Consensus 138 ~~ig~s~~m~~l~~~i~~~---a~~~~~-vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKI---SCAECP-VLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHH---TTCCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHh---cCCCCC-eEEecCCCcCHHHHHHHHHH
Confidence 4677777777777776543 222333 48999999999999999986
No 412
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.43 E-value=0.16 Score=51.37 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 036079 178 VISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999863
No 413
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.37 E-value=0.19 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|.|||||++.+.-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999985
No 414
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.35 E-value=0.17 Score=52.77 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 415
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.32 E-value=0.33 Score=54.90 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+..+|+|+|.+|+||||++.++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999875
No 416
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.32 E-value=0.15 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|+|+|+.|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 417
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.23 E-value=0.2 Score=55.27 Aligned_cols=22 Identities=36% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999986
No 418
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.23 E-value=0.13 Score=54.25 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=16.5
Q ss_pred cEEEEEECCCCChHHHHHHHHh-c
Q 036079 176 FSVISINGMGGVGKTTLAQLVY-N 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~-~ 198 (1399)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 419
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.22 E-value=0.21 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.++|+|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999986
No 420
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.22 E-value=0.16 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|++|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346899999999999999999884
No 421
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.21 E-value=0.28 Score=49.91 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=21.9
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.....|+|+|.+|+|||||+..+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999999864
No 422
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.20 E-value=0.19 Score=53.09 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+++|+|+.|+|||||.+.++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999985
No 423
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.13 E-value=0.12 Score=51.16 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 424
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.12 E-value=0.21 Score=61.19 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899999888888877532 47899999999999999999863
No 425
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.03 E-value=0.67 Score=53.24 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=55.1
Q ss_pred HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHH-HHHhcCcchhccCCc-eEEEEeCCCCC-HHHHHHHHHHhccCC--
Q 036079 160 AIVELLLRDDLRADDGFSVISINGMGGVGKTTLA-QLVYNDDRVQRHFEI-KAWTCVSEEFD-VFRISKSILNSVASD-- 234 (1399)
Q Consensus 160 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~il~~l~~~-- 234 (1399)
+.++.|..- .+..-++|.|.+|+|||+|| ..+.+. ..-+. ++++-++++.. +.++..++.+.=...
T Consensus 151 kaID~l~Pi-----grGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~t 221 (513)
T 3oaa_A 151 KAVDSMIPI-----GRGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANT 221 (513)
T ss_dssp HHHHHHSCC-----BTTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTE
T ss_pred eeecccccc-----ccCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccce
Confidence 445555432 23446789999999999997 466652 22343 57888887754 455666654421111
Q ss_pred -----CCCCcccHHH----HHHHHHHHh--cCCeEEEEEcccC
Q 036079 235 -----QCTDKDDLNL----LQEKLKKQL--SGKKFLLVLDDVW 266 (1399)
Q Consensus 235 -----~~~~~~~~~~----~~~~l~~~l--~~k~~LiVlDdv~ 266 (1399)
..+++..... ..-.+.+++ +++.+|||+||+.
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 222 IVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 1112211111 111223333 5899999999994
No 426
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.94 E-value=0.33 Score=50.84 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=22.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...+|+|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 427
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.88 E-value=0.21 Score=52.04 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 428
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.87 E-value=0.91 Score=54.19 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=36.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSV 231 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 231 (1399)
...++.|.|.+|+||||+|.+++.+...+ +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 44689999999999999999998643222 112467776543 4667776665443
No 429
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.83 E-value=0.21 Score=52.60 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..+++|+|+.|.|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999853
No 430
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.80 E-value=0.22 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.+.|.|.|+.|+||||||.+++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999999863
No 431
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.73 E-value=0.23 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++++|+|+.|+|||||+..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 432
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.69 E-value=0.25 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999986
No 433
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.65 E-value=0.28 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+..++.+.|.||+||||++..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4567899999999999999999985
No 434
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.64 E-value=0.22 Score=53.42 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|+|||||++.++-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999985
No 435
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.64 E-value=0.11 Score=54.13 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 436
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.63 E-value=0.3 Score=50.11 Aligned_cols=22 Identities=32% Similarity=0.247 Sum_probs=20.1
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+++|+|+.|.|||||++.++-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 437
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.61 E-value=0.17 Score=51.06 Aligned_cols=111 Identities=10% Similarity=0.115 Sum_probs=55.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEe-CCCCCHHHHHHHHHHhccCCCCC-CcccHHHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCV-SEEFDVFRISKSILNSVASDQCT-DKDDLNLLQEKLKKQ 252 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~ 252 (1399)
..++..++|..|.||||.+..+++....+ .+...++-.. +.... ...+..+++..... ...+.+ .+.+.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~kV~v~k~~~d~r~~----~~~i~s~~g~~~~a~~~~~~~----~i~~~ 77 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPEIDNRYS----KEDVVSHMGEKEQAVAIKNSR----EILKY 77 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-----------CEEECTTSCEEECEEESSST----HHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCccch----HHHHHhhcCCceeeEeeCCHH----HHHHH
Confidence 34799999999999999998888743322 2333333211 11111 11222333211000 001111 23333
Q ss_pred hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChh
Q 036079 253 LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG 297 (1399)
Q Consensus 253 l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~ 297 (1399)
+.++-=+|++|.+...+.+..+.+... .+ .|..||+|.++.+
T Consensus 78 ~~~~~dvViIDEaqfl~~~~v~~l~~l-~~--~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 78 FEEDTEVIAIDEVQFFDDEIVEIVNKI-AE--SGRRVICAGLDMD 119 (191)
T ss_dssp CCTTCSEEEECSGGGSCTHHHHHHHHH-HH--TTCEEEEEECSBC
T ss_pred HhccCCEEEEECCCCCCHHHHHHHHHH-Hh--CCCEEEEEecccc
Confidence 333334999999866543444443322 22 3778999988643
No 438
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.61 E-value=0.2 Score=52.33 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|+|||||.+.++-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999985
No 439
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.57 E-value=0.21 Score=54.62 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.++|.|+|+.|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 440
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.57 E-value=0.24 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=22.4
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999999886
No 441
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.55 E-value=0.24 Score=55.40 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999999986
No 442
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.50 E-value=0.16 Score=52.90 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..|.|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 443
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.47 E-value=0.44 Score=48.83 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=26.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD 219 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1399)
.|.+.|.||+||||+|..++.... +..++ +.++.+....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~q~~ 47 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVETHGR 47 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCCTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCCCCC
Confidence 478899999999999988887432 22333 44555554433
No 444
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.45 E-value=0.23 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|+|||||++.++-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346899999999999999999985
No 445
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.42 E-value=0.26 Score=52.17 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|.|||||++.++-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999999975
No 446
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.41 E-value=0.23 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+|+|.|+.|+||||+|+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999986
No 447
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.40 E-value=0.48 Score=48.99 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.+..+|+|.|+.|+||||+++.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999874
No 448
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.31 E-value=0.56 Score=62.99 Aligned_cols=85 Identities=22% Similarity=0.164 Sum_probs=59.9
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC----CcccHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT----DKDDLNLLQEKL 249 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 249 (1399)
++.++|-|+|+.|+||||||.++... .+..=...+|+++.+..++.- ++.++..... .++.-++....+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 35689999999999999999999873 333445678998888877663 6666654321 334445555555
Q ss_pred HHHhc-CCeEEEEEccc
Q 036079 250 KKQLS-GKKFLLVLDDV 265 (1399)
Q Consensus 250 ~~~l~-~k~~LiVlDdv 265 (1399)
...++ +..-+||+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 55554 56679999988
No 449
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.29 E-value=0.23 Score=50.94 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+|.|.|++|+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 450
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.23 E-value=0.23 Score=53.45 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|+|||||++.+.-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999975
No 451
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.07 E-value=0.23 Score=51.98 Aligned_cols=21 Identities=43% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 452
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.03 E-value=0.3 Score=56.00 Aligned_cols=101 Identities=11% Similarity=0.049 Sum_probs=56.8
Q ss_pred HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhcc--CCceEEEEeCCCC-CHHHHHHHHHHhccC---
Q 036079 160 AIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH--FEIKAWTCVSEEF-DVFRISKSILNSVAS--- 233 (1399)
Q Consensus 160 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~il~~l~~--- 233 (1399)
+.++.|..- .+..-++|.|.+|+|||+|+.+++........ =+.++++-+++.. .+.++..++.+.=..
T Consensus 141 r~ID~l~pi-----grGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTL-----VRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCC-----BTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeecc-----ccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 345555432 23345688899999999999999874332111 1356677777665 355666666543111
Q ss_pred ----CCCCCcccHH----HHHHHHHHHh---cCCeEEEEEccc
Q 036079 234 ----DQCTDKDDLN----LLQEKLKKQL---SGKKFLLVLDDV 265 (1399)
Q Consensus 234 ----~~~~~~~~~~----~~~~~l~~~l---~~k~~LiVlDdv 265 (1399)
...+++.... ...-.+.+++ +++.+|+++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1111111111 1111233444 479999999998
No 453
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.03 E-value=0.26 Score=52.57 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|+|||||.+.++-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999985
No 454
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.99 E-value=0.24 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.135 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...|.|.|++|+||||+|+.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 455
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.91 E-value=0.22 Score=51.38 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+++|+|+.|.|||||.+.++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999985
No 456
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.84 E-value=0.32 Score=47.94 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.6
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 036079 177 SVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 457
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.80 E-value=0.27 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|.|||||++.++-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 458
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.77 E-value=0.26 Score=53.73 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 446899999999999999999885
No 459
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.76 E-value=0.26 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|.|||||.+.++-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999985
No 460
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.75 E-value=0.26 Score=49.71 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 036079 178 VISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 461
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.73 E-value=1.3 Score=51.61 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=35.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHh
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNS 230 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 230 (1399)
...++.|.|.+|+||||+|.+++.+...+ =..++|++.. .+..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 44689999999999999999998753332 1246665543 4455566555543
No 462
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.72 E-value=0.26 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|.|||||++.++-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999986
No 463
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.71 E-value=0.28 Score=52.79 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|+|||||++.++-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999986
No 464
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.67 E-value=0.28 Score=55.79 Aligned_cols=91 Identities=10% Similarity=0.128 Sum_probs=51.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchh--------ccCC-ceEEEEeCCCC-CHHHHHHHHHHh--cc-----CCCCCC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQ--------RHFE-IKAWTCVSEEF-DVFRISKSILNS--VA-----SDQCTD 238 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~il~~--l~-----~~~~~~ 238 (1399)
..-++|.|.+|+|||+|+.++++..... ++=+ .++++-+++.. .+.++..++.+. +. ....++
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3456899999999999999998743321 1111 46677777664 345555554432 10 001112
Q ss_pred cccHHH----HHHHHHHHh---cCCeEEEEEcccC
Q 036079 239 KDDLNL----LQEKLKKQL---SGKKFLLVLDDVW 266 (1399)
Q Consensus 239 ~~~~~~----~~~~l~~~l---~~k~~LiVlDdv~ 266 (1399)
+..... ..-.+.+++ +++.+|+++||+.
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 211111 112234444 3799999999993
No 465
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.63 E-value=0.27 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|.|||||.+.++.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999985
No 466
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.61 E-value=0.97 Score=51.63 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.8
Q ss_pred CCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 172 ADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 172 ~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.....++..|.|.+|.||||+.++.++
T Consensus 157 ~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 157 HVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 346788999999999999999998885
No 467
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.60 E-value=0.27 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|+|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999985
No 468
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.59 E-value=0.24 Score=51.50 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 469
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.56 E-value=0.28 Score=52.82 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|.|||||++.++-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999985
No 470
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.53 E-value=0.14 Score=55.88 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=18.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 471
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.49 E-value=0.28 Score=52.04 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|.|||||++.++-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999985
No 472
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.47 E-value=0.33 Score=51.94 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=55.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC-CCHHHHHHHHHH--hccCCCCCCcccHHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE-FDVFRISKSILN--SVASDQCTDKDDLNLLQEKLKK 251 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~--~l~~~~~~~~~~~~~~~~~l~~ 251 (1399)
...+++|+|+.|+||||+++.+..- ....+...+++.-... +-.... ..+.. .++. +.. .+...+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl----~~~---~l~~~la~ 93 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE----DTK---SFADALRA 93 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT----TBS---CHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC----CHH---HHHHHHHH
Confidence 3469999999999999999998752 2222233443322110 000000 00000 0100 111 22445566
Q ss_pred HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhh
Q 036079 252 QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGV 298 (1399)
Q Consensus 252 ~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~ 298 (1399)
.+..++=+|++|+..+. ......... ...|.-|++||.+...
T Consensus 94 aL~~~p~illlDEp~D~--~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 94 ALREDPDVIFVGEMRDL--ETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHCCSEEEESCCCSH--HHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred HHhhCCCEEEeCCCCCH--HHHHHHHHH---HccCCEEEEEeCcchH
Confidence 66666778999998532 222222222 1246668888876443
No 473
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=87.46 E-value=0.36 Score=55.68 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=49.0
Q ss_pred CcEEEEEECCCCChHHHHH-HHHhcCcchhccCCc-eEEEEeCCCCC-HHHHHHHHHHhccC-------CCCCCcccH--
Q 036079 175 GFSVISINGMGGVGKTTLA-QLVYNDDRVQRHFEI-KAWTCVSEEFD-VFRISKSILNSVAS-------DQCTDKDDL-- 242 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~il~~l~~-------~~~~~~~~~-- 242 (1399)
+..-++|+|.+|+|||+|| ..+++.. .-+. ++++-+++... +.++.+.+.+.=.. ...+++...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 3456789999999999996 4676632 2343 46777877653 44555554432100 011111111
Q ss_pred --HHHHHHHHHHh--cCCeEEEEEcccC
Q 036079 243 --NLLQEKLKKQL--SGKKFLLVLDDVW 266 (1399)
Q Consensus 243 --~~~~~~l~~~l--~~k~~LiVlDdv~ 266 (1399)
....-.+.+++ +++.+||++||+.
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11111222222 5899999999983
No 474
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.40 E-value=0.29 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|.|||||++.++-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 475
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.30 E-value=0.3 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|.|||||++.++-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999975
No 476
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.15 E-value=0.3 Score=51.77 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|+|||||.+.++-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999986
No 477
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.12 E-value=0.49 Score=50.03 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=26.4
Q ss_pred HHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 159 EAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 159 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+..|+... .+....+.++|++|+|||.+|.++++
T Consensus 91 ~~l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3455555421 13345799999999999999999987
No 478
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.09 E-value=0.32 Score=53.78 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 479
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.09 E-value=0.31 Score=55.09 Aligned_cols=25 Identities=28% Similarity=0.173 Sum_probs=22.1
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...++++|+|++|+|||||++.++.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456999999999999999999986
No 480
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.04 E-value=0.29 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.-.|+|+|.+|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 481
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=86.96 E-value=0.52 Score=51.01 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=28.2
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF 218 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 218 (1399)
++|+|.|-||+||||+|..++.... ..=..++-++.....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCCCCC
Confidence 5788899999999999999886332 222246667766443
No 482
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=86.82 E-value=0.92 Score=46.37 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.8
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 036079 177 SVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+.|+|-|.-|+||||+++.+++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999873
No 483
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.79 E-value=0.32 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|+|||||.+.++-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999985
No 484
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.70 E-value=0.35 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999886
No 485
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.70 E-value=0.32 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|.|||||.+.++-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999986
No 486
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.59 E-value=0.33 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 036079 177 SVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
-.|+|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 487
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.50 E-value=0.32 Score=53.57 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...+++|+|++|+|||||++.++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999863
No 488
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=86.46 E-value=0.36 Score=55.75 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..++|+|+|.+|+||||+|..++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999864
No 489
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=86.41 E-value=0.23 Score=60.31 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 036079 178 VISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
-|.++|++|+|||+||+.+++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 5889999999999999999874
No 490
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=86.41 E-value=1.3 Score=53.99 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+++.|.|.+|+||||++..+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999887764
No 491
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=86.35 E-value=1.6 Score=45.91 Aligned_cols=105 Identities=13% Similarity=0.033 Sum_probs=52.5
Q ss_pred EEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCC--------CCC----CcccHHHHH
Q 036079 179 ISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASD--------QCT----DKDDLNLLQ 246 (1399)
Q Consensus 179 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~--------~~~----~~~~~~~~~ 246 (1399)
+.|+|+.|.|||.+|..+.... . ..++++ +....-..+....+.+ ++.. ... .....+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv-~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIV-VPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEE-ESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEE-eCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 7789999999999998877521 1 123333 2222112223333222 2111 000 011223333
Q ss_pred HHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecC
Q 036079 247 EKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTR 294 (1399)
Q Consensus 247 ~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr 294 (1399)
.... .+.++--+||+|+++......+..+...+. ...++.+|..
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 3332 333455699999998765555666554443 2334555543
No 492
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.32 E-value=0.31 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++.|+|++|+||||||..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999885
No 493
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.14 E-value=0.61 Score=51.05 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=28.4
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF 218 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 218 (1399)
++|+|.|-||+||||+|..++.....+ . ..++-+++....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~-G-~rVlliD~D~q~ 42 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM-G-KKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT-T-CCEEEEEECSSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC-C-CeEEEEecCCCC
Confidence 688889999999999999998633222 1 245666766543
No 494
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.07 E-value=0.56 Score=48.70 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=19.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+..+|+|.|+.|+||||+++.+++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 495
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=86.05 E-value=0.79 Score=51.93 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=32.9
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++|....+.++.+.+.... ... ..|.|+|.+|+||+++|+.++.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a---~~~-~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA---KSK-APVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH---TSC-SCEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhh---ccc-hhheEEeCCCchHHHHHHHHHH
Confidence 357888777777666654321 112 2367999999999999999986
No 496
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.01 E-value=0.7 Score=48.30 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=26.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEE
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWT 212 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv 212 (1399)
..+|+|.|+.|+||||+++.++.... ...+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeee
Confidence 46899999999999999999987432 2234434443
No 497
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.91 E-value=0.46 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 498
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.84 E-value=0.34 Score=53.01 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346899999999999999999875
No 499
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.79 E-value=0.53 Score=46.92 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.1
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.+...|+|+|.+|+|||||+..+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999864
No 500
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=85.72 E-value=1.7 Score=44.87 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 036079 177 SVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
--|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45789999999999999999864
Done!