BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036082
(315 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P31133|POTF_ECOLI Putrescine-binding periplasmic protein OS=Escherichia coli (strain
K12) GN=potF PE=1 SV=3
Length = 370
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 38/165 (23%)
Query: 14 DPRGKICAAPYRWGTVVIAYKKSKFRK--HNLAPIEDWKDLWRPELAGR-----ISMVNS 66
DP K A PY W T I Y K + AP++ W + +PE + +S +++
Sbjct: 124 DPDNKF-AMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDA 182
Query: 67 PREVIGSI-------------------AVQLNLALLAN----QSAHHLKAFGIGDVWVAV 103
P EV ++ A L L L N S+ ++ GD+ VA+
Sbjct: 183 PEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAI 242
Query: 104 GWSSDVLPA------VKHMSNVAV-VPKSGASLWADLWAIPAASR 141
GW+ DV A K+ NV+ +PK GA + D++A+PA ++
Sbjct: 243 GWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAK 287
>sp|P45168|POTD1_HAEIN Spermidine/putrescine-binding periplasmic protein 1 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=potD-B PE=3 SV=1
Length = 360
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 43/214 (20%)
Query: 12 EIDP--------RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISM 63
E+DP +G + P G IA+ + ++ W DLW+PE A ++ +
Sbjct: 121 ELDPDWLNKPYDKGNKYSLPQLLGAPGIAFNTNTYKGEQFT---SWADLWKPEFANKVQL 177
Query: 64 VNSPREVIGSIA-----------------------VQLNLALLANQSAHHLKAFGIGDVW 100
++ REV +IA ++L +L+ S + +F G+V
Sbjct: 178 LDDAREVF-NIALLKIGQDPNTQDPAIIKQAYEELLKLRPNVLSFNSDNPANSFISGEVE 236
Query: 101 VAVGWSSDVLPAVKHMSNVAVV-PKSGASLWADLWAIPA-------ASRLETKQIGGRVR 152
V W+ V A K + + +V PK G LW D AIPA A +L +G +
Sbjct: 237 VGQLWNGSVRIAKKEKAPLNMVFPKEGPVLWVDTLAIPATAKNSEGAHKLINYMLGKKTA 296
Query: 153 GLSPLIHQWIEFCLQTARALPFKQEVIPGASPSA 186
L + ++ +ALP + P PSA
Sbjct: 297 EKLTLAIGYPTSNIEAKKALPKEITEDPAIYPSA 330
>sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding periplasmic protein 2 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=potD-A PE=3 SV=2
Length = 350
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 41/184 (22%)
Query: 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVI 71
E DP K + PY +G I + I W DLW+PE G++ M + REV
Sbjct: 121 EFDPENK-YSLPYVYGLTGIEVNADEIDPKT---ITSWADLWKPEFKGKVLMTSDAREVF 176
Query: 72 GSIAVQLN-------------------LALLANQSAHHLKA----FGIGDVWVAVGWSSD 108
+A+ L+ LL N + + + + G+V + + W+
Sbjct: 177 -HVALLLDGKSPNTTNEEDIKTAYERLEKLLPNVATFNSDSPEVPYVQGEVAIGMIWNGS 235
Query: 109 VLPAVKHMSNVAVV-PKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQ 167
A K ++ V PK GA W D +AIP ++ V G H++I+F L+
Sbjct: 236 AYLAQKENQSLQFVYPKEGAIFWMDNYAIPTTAK--------NVEG----AHKFIDFLLR 283
Query: 168 TARA 171
A
Sbjct: 284 PENA 287
>sp|P41889|CUT9_SCHPO Anaphase-promoting complex subunit cut9 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cut9 PE=1 SV=2
Length = 671
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 21/220 (9%)
Query: 67 PREVIGSIAVQLNLALLAN---QSAHHLKAFG---IGDVWVAVGWSSDVLPAVKHMSNVA 120
P +G +QL LLAN QS++ L + + ++ V SD+ A+ H N
Sbjct: 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502
Query: 121 VVPK---SGASLWADLWAIPAASRLETKQIGGRVRGLSP-LIHQWIEFCLQTARALPFKQ 176
++ K S WA WA + + K + L+ L+ + + TA AL +
Sbjct: 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562
Query: 177 EVIPGASPSALESTLVKLPGELLKG---KPSLDTN-LIAGVPPAEILARFEFLEPLSEAT 232
+ IPG + + L +L P E++ K +L+ N L +G ++ + E E + ++
Sbjct: 563 KKIPGLAITHLHESLAISPNEIMASDLLKRALEENSLTSGFLNSKYVFEDEVSEYMQQSN 622
Query: 233 L--SDMS-GWEIGSGQLGQSITSLVKEASAALYITGCTEM 269
L SD S E SG++ +S V + + LY +EM
Sbjct: 623 LNTSDKSMSMEDQSGKVTES----VNDRTQVLYADSRSEM 658
>sp|P0AFL0|POTD_SHIFL Spermidine/putrescine-binding periplasmic protein OS=Shigella
flexneri GN=potD PE=3 SV=1
Length = 348
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 27/152 (17%)
Query: 13 IDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG 72
DP + PY WG I + + W DLW+PE G + + + REV
Sbjct: 119 FDPNND-YSIPYIWGATAIGVNGDAVDPKS---VTSWADLWKPEYKGSLLLTDDAREVFQ 174
Query: 73 SIAVQLNLA------------------LLANQSAHH----LKAFGIGDVWVAVGWSSDVL 110
+L + L+ N +A + + G+V + + W+
Sbjct: 175 MALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAF 234
Query: 111 PAVKHMSNVAVV-PKSGASLWADLWAIPAASR 141
A + + + VV PK G W D AIPA ++
Sbjct: 235 VARQAGTPIDVVWPKEGGIFWMDSLAIPANAK 266
>sp|P0AFK9|POTD_ECOLI Spermidine/putrescine-binding periplasmic protein OS=Escherichia
coli (strain K12) GN=potD PE=1 SV=1
Length = 348
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 27/152 (17%)
Query: 13 IDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG 72
DP + PY WG I + + W DLW+PE G + + + REV
Sbjct: 119 FDPNND-YSIPYIWGATAIGVNGDAVDPKS---VTSWADLWKPEYKGSLLLTDDAREVFQ 174
Query: 73 SIAVQLNLA------------------LLANQSAHH----LKAFGIGDVWVAVGWSSDVL 110
+L + L+ N +A + + G+V + + W+
Sbjct: 175 MALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAF 234
Query: 111 PAVKHMSNVAVV-PKSGASLWADLWAIPAASR 141
A + + + VV PK G W D AIPA ++
Sbjct: 235 VARQAGTPIDVVWPKEGGIFWMDSLAIPANAK 266
>sp|P0A2C7|POTD_SALTY Spermidine/putrescine-binding periplasmic protein OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=potD PE=3 SV=1
Length = 348
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 27/152 (17%)
Query: 13 IDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG 72
DP + PY WG I I W DLW+PE + + + REV
Sbjct: 119 FDPNND-YSVPYIWGATAIGVNSDAIDPKT---ITSWADLWKPEYKNSLLLTDDAREVFQ 174
Query: 73 SIAVQLNLA------------------LLANQSAHH----LKAFGIGDVWVAVGWSSDVL 110
+L + L+ N +A + + G+V + + W+
Sbjct: 175 MALRKLGYSGNTTDPKEIEAAYEELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAF 234
Query: 111 PAVKHMSNVAVV-PKSGASLWADLWAIPAASR 141
A + + + VV PK G W D AIPA ++
Sbjct: 235 VARQAGTPLEVVWPKEGGIFWMDSLAIPANAK 266
>sp|P0A2C8|POTD_SALTI Spermidine/putrescine-binding periplasmic protein OS=Salmonella
typhi GN=potD PE=3 SV=1
Length = 348
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 27/152 (17%)
Query: 13 IDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG 72
DP + PY WG I I W DLW+PE + + + REV
Sbjct: 119 FDPNND-YSVPYIWGATAIGVNSDAIDPKT---ITSWADLWKPEYKNSLLLTDDAREVFQ 174
Query: 73 SIAVQLNLA------------------LLANQSAHH----LKAFGIGDVWVAVGWSSDVL 110
+L + L+ N +A + + G+V + + W+
Sbjct: 175 MALRKLGYSGNTTDPKEIEAAYEELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAF 234
Query: 111 PAVKHMSNVAVV-PKSGASLWADLWAIPAASR 141
A + + + VV PK G W D AIPA ++
Sbjct: 235 VARQAGTPLEVVWPKEGGIFWMDSLAIPANAK 266
>sp|Q9KU25|NSPS_VIBCH Norspermidine sensor OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=nspS PE=3 SV=1
Length = 359
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 21 AAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--PELAGRISMVNSPREVIGSIAVQL 78
A PY WG+V IAY+KS F K P W ++ P GR+ M+ E + L
Sbjct: 127 AVPYFWGSVGIAYRKSLFDK----PPTQWSEVVDIAPAHRGRVGMLKDSVETLLPALYML 182
Query: 79 N 79
N
Sbjct: 183 N 183
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,928,345
Number of Sequences: 539616
Number of extensions: 4544213
Number of successful extensions: 9997
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9984
Number of HSP's gapped (non-prelim): 16
length of query: 315
length of database: 191,569,459
effective HSP length: 117
effective length of query: 198
effective length of database: 128,434,387
effective search space: 25430008626
effective search space used: 25430008626
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)