Query 036082
Match_columns 315
No_of_seqs 252 out of 1948
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:16:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09501 potD spermidine/putre 100.0 3.4E-33 7.4E-38 268.0 21.8 212 7-247 113-347 (348)
2 COG0687 PotD Spermidine/putres 100.0 1.6E-32 3.5E-37 265.6 22.3 219 3-248 113-363 (363)
3 PRK10682 putrescine transporte 100.0 9.8E-31 2.1E-35 253.0 21.9 210 13-247 123-369 (370)
4 TIGR03261 phnS2 putative 2-ami 99.9 1.6E-22 3.4E-27 193.0 19.3 151 14-176 111-281 (334)
5 PF13343 SBP_bac_6: Bacterial 99.9 9E-22 2E-26 179.0 15.6 157 10-185 40-215 (242)
6 PRK11622 hypothetical protein; 99.9 1.5E-20 3.3E-25 184.4 18.8 202 17-243 147-396 (401)
7 TIGR01276 thiB thiamine ABC tr 99.8 1.3E-20 2.9E-25 177.6 15.3 143 18-176 96-259 (309)
8 TIGR03227 PhnS 2-aminoethylpho 99.8 5.3E-20 1.1E-24 178.4 18.4 148 20-185 132-307 (367)
9 TIGR01254 sfuA ABC transporter 99.8 4E-20 8.8E-25 174.1 15.6 150 19-186 97-268 (304)
10 PRK11205 tbpA thiamine transpo 99.8 1.7E-19 3.6E-24 171.9 15.3 141 20-176 119-280 (330)
11 PF13416 SBP_bac_8: Bacterial 99.8 3.1E-18 6.8E-23 157.3 15.3 167 16-200 81-275 (281)
12 PRK15046 2-aminoethylphosphona 99.7 3E-17 6.6E-22 157.8 14.6 154 12-185 121-300 (349)
13 COG1840 AfuA ABC-type Fe3+ tra 99.6 3.2E-15 7E-20 141.2 14.7 141 25-177 83-245 (299)
14 COG4143 TbpA ABC-type thiamine 99.6 1.8E-15 3.9E-20 142.3 11.4 159 20-200 123-304 (336)
15 TIGR03850 bind_CPR_0540 carboh 99.6 3.5E-14 7.7E-19 139.3 16.5 156 16-185 148-363 (437)
16 TIGR03851 chitin_NgcE carbohyd 99.6 4.5E-14 9.8E-19 139.6 13.9 156 16-185 150-369 (450)
17 PRK09474 malE maltose ABC tran 99.5 2.6E-12 5.7E-17 124.5 17.5 145 16-176 126-321 (396)
18 PRK10974 glycerol-3-phosphate 99.4 1.5E-11 3.2E-16 121.4 16.6 156 16-184 134-350 (438)
19 TIGR01256 modA molybdenum ABC 99.4 3.8E-12 8.2E-17 113.8 10.6 131 24-176 71-214 (216)
20 PF01547 SBP_bac_1: Bacterial 99.3 8E-11 1.7E-15 108.4 13.4 140 19-172 107-315 (315)
21 TIGR00971 3a0106s03 sulfate/th 99.2 2.4E-10 5.3E-15 109.1 14.9 135 21-176 98-265 (315)
22 COG1653 UgpB ABC-type sugar tr 99.2 9.4E-11 2E-15 112.9 9.8 155 16-183 135-352 (433)
23 COG4134 ABC-type uncharacteriz 99.2 1.4E-10 3E-15 109.9 9.4 163 19-200 142-347 (384)
24 PRK10852 thiosulfate transport 99.1 1.1E-09 2.4E-14 105.7 15.0 135 21-176 115-282 (338)
25 PRK10752 sulfate transporter s 99.1 3E-09 6.4E-14 102.4 14.9 132 26-176 113-276 (329)
26 COG2182 MalE Maltose-binding p 99.1 4.8E-10 1E-14 110.6 9.0 147 12-176 136-336 (420)
27 PF13531 SBP_bac_11: Bacterial 99.0 1.1E-08 2.3E-13 92.2 14.4 137 20-176 72-226 (230)
28 PRK03537 molybdate ABC transpo 98.9 3.2E-08 6.9E-13 87.6 13.7 140 22-184 17-185 (188)
29 PRK10677 modA molybdate transp 98.9 2.1E-08 4.5E-13 93.2 12.0 136 23-176 103-251 (257)
30 PRK04168 molybdate ABC transpo 98.3 9.4E-06 2E-10 78.4 12.1 155 20-199 105-331 (334)
31 PF02030 Lipoprotein_8: Hypoth 98.1 1.2E-05 2.5E-10 80.4 8.1 134 20-167 142-335 (493)
32 COG0725 ModA ABC-type molybdat 97.9 0.00025 5.4E-09 66.2 12.9 136 20-176 103-251 (258)
33 COG1613 Sbp ABC-type sulfate t 97.7 0.00087 1.9E-08 63.3 13.1 145 21-185 126-299 (348)
34 TIGR03730 tungstate_WtpA tungs 96.4 0.014 3E-07 55.0 8.4 127 22-165 76-273 (273)
35 COG4588 AcfC Accessory coloniz 94.6 0.65 1.4E-05 42.1 11.6 113 45-176 114-247 (252)
36 PRK11063 metQ DL-methionine tr 87.0 16 0.00035 34.2 13.0 77 87-177 184-262 (271)
37 COG4150 CysP ABC-type sulfate 86.0 1.6 3.5E-05 40.7 5.5 68 95-176 212-287 (341)
38 PF03401 TctC: Tripartite tric 81.5 40 0.00087 31.4 13.1 151 9-176 59-241 (274)
39 PF12727 PBP_like: PBP superfa 79.8 21 0.00046 31.6 10.1 59 88-165 134-192 (193)
40 PRK09861 cytoplasmic membrane 79.6 50 0.0011 30.9 13.0 77 87-177 185-263 (272)
41 smart00062 PBPb Bacterial peri 77.1 16 0.00036 30.2 8.3 110 20-140 79-191 (219)
42 TIGR00363 lipoprotein, YaeC fa 72.7 19 0.00041 33.6 8.1 77 87-177 171-249 (258)
43 PRK10797 glutamate and asparta 62.7 1.4E+02 0.003 28.1 13.1 74 19-107 125-207 (302)
44 PF09084 NMT1: NMT1/THI5 like; 62.6 94 0.002 26.9 10.2 68 88-167 130-204 (216)
45 COG0226 PstS ABC-type phosphat 60.3 91 0.002 29.8 10.3 155 18-183 115-312 (318)
46 PF03180 Lipoprotein_9: NLPA l 60.2 42 0.00091 30.9 7.7 76 89-178 153-229 (237)
47 KOG1312 DHHC-type Zn-finger pr 55.2 3.7 8E-05 39.0 -0.2 33 281-313 141-181 (341)
48 COG2998 TupB ABC-type tungstat 50.3 16 0.00035 33.9 3.1 23 154-176 238-260 (280)
49 PRK09495 glnH glutamine ABC tr 50.1 1.8E+02 0.004 25.7 10.9 107 20-140 103-215 (247)
50 cd00134 PBPb Bacterial peripla 48.9 92 0.002 25.6 7.5 120 19-166 77-202 (218)
51 PRK10859 membrane-bound lytic 47.4 1.2E+02 0.0026 30.6 9.3 108 19-139 120-235 (482)
52 PRK11553 alkanesulfonate trans 45.1 2.2E+02 0.0048 26.4 10.2 28 88-115 166-193 (314)
53 TIGR01729 taurine_ABC_bnd taur 44.5 2.4E+02 0.0051 26.0 10.2 68 87-167 136-208 (300)
54 TIGR03871 ABC_peri_MoxJ_2 quin 43.9 2.2E+02 0.0047 24.8 13.1 126 20-167 73-215 (232)
55 COG1910 Periplasmic molybdate- 43.3 2.2E+02 0.0047 26.2 9.2 66 88-173 140-205 (223)
56 PRK11119 proX glycine betaine 39.4 1.7E+02 0.0037 28.2 8.6 91 26-121 112-226 (331)
57 PF03202 Lipoprotein_10: Putat 35.6 36 0.00077 28.8 2.8 26 131-168 6-31 (135)
58 PF13379 NMT1_2: NMT1-like fam 27.9 4.4E+02 0.0095 23.5 9.3 89 26-117 89-189 (252)
59 TIGR03870 ABC_MoxJ methanol ox 26.9 4.6E+02 0.0099 23.4 9.9 115 18-141 72-217 (246)
60 PF15091 DUF4554: Domain of un 26.7 23 0.0005 34.9 0.2 27 26-55 49-75 (458)
61 COG4623 Predicted soluble lyti 25.7 2.4E+02 0.0051 28.4 6.9 75 88-179 166-246 (473)
62 KOG0509 Ankyrin repeat and DHH 25.6 27 0.00058 36.5 0.4 26 288-313 421-453 (600)
63 KOG3244 Protein involved in ub 24.0 33 0.00073 31.7 0.7 19 157-175 83-102 (267)
64 COG3181 Uncharacterized protei 22.9 7E+02 0.015 24.2 10.0 81 87-176 185-284 (319)
65 PF08115 Toxin_28: SFI toxin f 21.9 32 0.0007 21.8 0.1 10 281-290 1-10 (35)
66 PF00123 Hormone_2: Peptide ho 21.5 59 0.0013 19.9 1.2 11 157-167 18-28 (28)
67 KOG3231 Predicted assembly/vac 20.7 96 0.0021 27.3 2.8 25 262-286 53-77 (208)
68 PF02591 DUF164: Putative zinc 20.5 51 0.0011 23.0 0.9 26 271-296 3-31 (56)
No 1
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=100.00 E-value=3.4e-33 Score=268.03 Aligned_cols=212 Identities=23% Similarity=0.367 Sum_probs=179.2
Q ss_pred ccCCCCcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH------------
Q 036082 7 RNDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI------------ 74 (315)
Q Consensus 7 ~~~~~~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a------------ 74 (315)
.+....+|+ |+.|++||.|++++|+||++++++ ++|+||+|||+|+|+|+|++.++..+.+.++
T Consensus 113 ~~~~~~~~~-~~~y~vP~~~~~~~i~YN~d~v~~---~~~~sw~dL~~p~~~g~i~~~~~~~~~~~~al~~~G~~~~~~~ 188 (348)
T PRK09501 113 DMLNKPFDP-NNDYSIPYIWGATAIGVNSDAIDP---KSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTD 188 (348)
T ss_pred HHhcCCCCC-CCceEeeeeccceEEEEcHHHcCC---CCCCCHHHHhCHHHcCCeEEeCCHHHHHHHHHHHcCCCCCCCC
Confidence 333344566 567999999999999999999975 3789999999999999999998877766443
Q ss_pred --HHHHHHHHHHhh--------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCc
Q 036082 75 --AVQLNLALLANQ--------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLE 143 (315)
Q Consensus 75 --~~~~a~~~L~~~--------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~ 143 (315)
+++++++.|.++ ++...+.|.+|++++++.|+++.......+.+|++ +|+||+..|+++++|+|+++|+
T Consensus 189 ~~~~~~a~~~l~~l~~~v~~~~~~~~~~~l~~Gev~i~~~w~~~~~~~~~~g~~i~~~~P~eG~~~~~~~~~i~k~a~n~ 268 (348)
T PRK09501 189 PKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNK 268 (348)
T ss_pred HHHHHHHHHHHHHhhhhhEEEcCcHHHHHHHcCCEEEEEeehHHHHHHHhcCCCceEEecCCCcceEEEeeeEECCCCCH
Confidence 245666666654 23456889999999999999998888888889999 9999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCCCCcccccCCCcHHHhhccc
Q 036082 144 TKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFE 223 (315)
Q Consensus 144 ~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~~~~~~p~~~~~~~~~ 223 (315)
+ +|++||||++|||+|+.+++ ..+|.+|+ .++.+.||+++++++ .+||+.+.+.+++
T Consensus 269 e------------~A~~Fi~~llspe~q~~~~~-~~~~~~~n--~~a~~~l~~~~~~~~--------~~~~~~~~~~~~~ 325 (348)
T PRK09501 269 E------------GALKLINFLLRPDVAKQVAE-TIGYPTPN--LAARKLLSPEVANDK--------SLYPDAETIKKGE 325 (348)
T ss_pred H------------HHHHHHHHHhCHHHHHHHHH-HhCCCChh--HHHHHhCCHHHhcCC--------CcCcCHHHHhccE
Confidence 8 99999999999999999985 67777766 567889999998754 3689999999999
Q ss_pred cccCCCHHHHHHHHHHHHHhcccC
Q 036082 224 FLEPLSEATLSDMSGWEIGSGQLG 247 (315)
Q Consensus 224 ~~~~l~~~~~~~~~~~~W~~ikag 247 (315)
++.++++. .+.+++ +|++||++
T Consensus 326 ~~~~~~~~-~~~~~~-~w~~~~~~ 347 (348)
T PRK09501 326 WQNDVGAA-SSIYEE-YYQKLKAG 347 (348)
T ss_pred EecCCCHH-HHHHHH-HHHHHhcc
Confidence 99999864 688999 99999975
No 2
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-32 Score=265.61 Aligned_cols=219 Identities=28% Similarity=0.455 Sum_probs=184.0
Q ss_pred ccccccCCCC-cCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcc----cCCc-eEeecChHHHhhHH--
Q 036082 3 VYLRRNDAGE-IDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPE----LAGR-ISMVNSPREVIGSI-- 74 (315)
Q Consensus 3 ~~~~~~~~~~-~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~----~~Gk-i~~~d~~~~~~g~a-- 74 (315)
++.+++.... +|| |+.|+|||.||++||+||+++++. -.+|+||++|||++ ++|+ +.+.++++++++++
T Consensus 113 ~l~~~~~~~~~~d~-g~~y~vPy~~g~t~i~Yn~~~~~~--~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~ 189 (363)
T COG0687 113 NLDPEFLNPPKFDP-GNKYSVPYFWGTTGIAYNTDKVKD--APPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALA 189 (363)
T ss_pred ccCHHHhccccCCC-CCEeeeeEEeeeeEEEEeccccCC--CCCCccHHHHhCchhhHHHhCCceEEecChHHHHHHHHH
Confidence 3566677776 787 889999999999999999999981 13789999999987 7888 88999988887765
Q ss_pred ------------HHHHHHHHHHhh---------cHHHHHHHHcCCEEEEEEehhhHHHHH--HcCCCeEE-EeCCCceee
Q 036082 75 ------------AVQLNLALLANQ---------SAHHLKAFGIGDVWVAVGWSSDVLPAV--KHMSNVAV-VPKSGASLW 130 (315)
Q Consensus 75 ------------~~~~a~~~L~~~---------~~~~~~~~~~Gev~~~~~ws~~~~~~~--~~~~~i~~-~PkeG~~~~ 130 (315)
.++++++.|.++ ++++.+.|++|+++++++|+|++..++ ..+.+++| +|+||+.+|
T Consensus 190 ~lg~~~n~~~~~~~~~a~~~L~~~kp~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~~~~~~~i~~~~p~eG~~~w 269 (363)
T COG0687 190 LLGKSPNTTDPEDLKKAFDLLDKLKPVNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEGSILW 269 (363)
T ss_pred HcCCCCCCCCHHHHHHHHHHHHHhCcccEEEecchHHHHHHhcCCEEEEEEeChHHHHHHHhhcCCceEEEcCCCCceee
Confidence 357777777665 568899999999999999999999985 56778999 999999999
Q ss_pred eeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCCCCcccc
Q 036082 131 ADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLI 210 (315)
Q Consensus 131 ~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~~~ 210 (315)
+|+|+|||+++|++ +|++||||+++||+|+.+++ .++|.+|+ ..+...++++....+
T Consensus 270 ~D~~~ipk~a~n~~------------~A~~fInf~~~pe~~a~~~~-~~~y~~~n--~~a~~~~~~~~~~~~-------- 326 (363)
T COG0687 270 FDNLAIPKGAKNVD------------AAYKFINFLLDPEVAAKLAE-FVGYAPPN--KAARKLLPKEIKDDP-------- 326 (363)
T ss_pred eEeeeeeCCCCCHH------------HHHHHHHHhhCHHHHHHHHH-hccCCCCC--HHHHHhCcHhhhcCc--------
Confidence 99999999999998 99999999999999999995 78887777 456556666555432
Q ss_pred cCCCcHHHhhccccccCCCHHHHHHHHHHHHHhcccCC
Q 036082 211 AGVPPAEILARFEFLEPLSEATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 211 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~W~~ikag~ 248 (315)
..+|+.+.+.+......+.++..+.|.+ .|++++.+.
T Consensus 327 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 363 (363)
T COG0687 327 AIYPTAEILKKLFGQKDLGPEALRLYTK-AWQEIKAWK 363 (363)
T ss_pred ccCCCHHHhhcccchhhccHHHHHHHHH-HHHHHhccC
Confidence 3688888888888888887767888999 999998763
No 3
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
Probab=99.97 E-value=9.8e-31 Score=252.97 Aligned_cols=210 Identities=24% Similarity=0.405 Sum_probs=173.3
Q ss_pred cCCCCCeEeeeeeeceEEEEEeccccccc-CCC-CCCChHhhcCcccCCc-----eEeecChHHHhhHH-----------
Q 036082 13 IDPRGKICAAPYRWGTVVIAYKKSKFRKH-NLA-PIEDWKDLWRPELAGR-----ISMVNSPREVIGSI----------- 74 (315)
Q Consensus 13 ~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~-Gl~-~P~SW~dL~dp~~~Gk-----i~~~d~~~~~~g~a----------- 74 (315)
+|+ |+.|||||.+++++|+||++++++. |++ ||+||++|++|+++++ +++.+.+.+++..+
T Consensus 123 ~~~-g~~y~vP~~~~~~~l~YN~~~~~~~~G~~~pp~sW~dl~~p~~~~~l~~~g~~~~~~~~~~~~~~l~~~G~~~~~~ 201 (370)
T PRK10682 123 HDP-DNKYAMPYMWATTGIGYNVDKVKAVLGEDAPVDSWDLVLKPENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNST 201 (370)
T ss_pred CCC-CCeEeeeeEecceEEEEehHHhcccccCCCCCCCHHHHhCchhhhhhcCCeEEEeCCHHHHHHHHHHHcCCCCCCC
Confidence 565 6789999999999999999999864 764 6799999999876554 67777776655443
Q ss_pred ---HH-HHHHHHHHhh--------cHHHHHHHHcCCEEEEEEehhhHHHHH------HcCCCeEE-EeCCCceeeeeeEE
Q 036082 75 ---AV-QLNLALLANQ--------SAHHLKAFGIGDVWVAVGWSSDVLPAV------KHMSNVAV-VPKSGASLWADLWA 135 (315)
Q Consensus 75 ---~~-~~a~~~L~~~--------~~~~~~~~~~Gev~~~~~ws~~~~~~~------~~~~~i~~-~PkeG~~~~~d~~~ 135 (315)
++ +++++.|.++ +++..+.|.+|+++|++.|++++..+. ..+.+|++ +|++|+.+|.++++
T Consensus 202 ~~~~~~~~a~~~l~~l~~~v~~~~~~~~~~~l~~Gev~~~~~w~~~~~~~~~~~~~~~~~~~i~~v~P~eG~~~~~d~~~ 281 (370)
T PRK10682 202 KADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSYSIPKEGALAFFDVFA 281 (370)
T ss_pred CHHHHHHHHHHHHHHhchhhEEEcCcHHHHHHhcCCEEEEEeecHHHHHHHHHHHhcccCCceEEEECCCcchhheeeeE
Confidence 22 3566666544 335677999999999999999987653 34678999 99999999999999
Q ss_pred EeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCCCCcccccCCCc
Q 036082 136 IPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPP 215 (315)
Q Consensus 136 I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~~~~~~p~ 215 (315)
|+|+++|++ +|++||||+++||+|+.+++ .++|.+|+ .++.+.+++++++++ .++|+
T Consensus 282 I~k~a~~~e------------~A~~Fi~f~lspe~qa~~a~-~~~y~p~~--~~a~~~~~~~~~~~p--------~~~~~ 338 (370)
T PRK10682 282 MPADAKNKD------------EAYQFLNYLLRPDVIAHISD-HVFYANAN--KAATPLVSAEVRDNP--------GIYPP 338 (370)
T ss_pred EECCCCCHH------------HHHHHHHHHhCHHHHHHHHH-HhCCCCcc--HHHHHhcCHHHhcCC--------CcCCC
Confidence 999999998 99999999999999999995 68887776 466677888887643 36899
Q ss_pred HHHhhccccccCCCHHHHHHHHHHHHHhcccC
Q 036082 216 AEILARFEFLEPLSEATLSDMSGWEIGSGQLG 247 (315)
Q Consensus 216 ~~~~~~~~~~~~l~~~~~~~~~~~~W~~ikag 247 (315)
.+.+.+++++..++++..+.|.+ +|++||++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~~ 369 (370)
T PRK10682 339 ADVRAKLFTLKVQDPKIDRVRTR-AWTKVKSG 369 (370)
T ss_pred HHHHhCcEEecCCCHHHHHHHHH-HHHHHHcc
Confidence 99999999999999887888999 99999975
No 4
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.90 E-value=1.6e-22 Score=193.02 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=124.0
Q ss_pred CCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH---------HHHHHHHHHH
Q 036082 14 DPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI---------AVQLNLALLA 84 (315)
Q Consensus 14 DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a---------~~~~a~~~L~ 84 (315)
|++|+.|++++..+..+|+||++++++.|+++|+||+||++|+|+|+|++.+......+.. ..+++++.|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~yN~~~~~~~g~~~P~sw~dL~~p~~~g~i~~~dp~~s~~~~~~~~~~~~~~G~~~~~~~l~ 190 (334)
T TIGR03261 111 DAKNPPHWVGMDAWMAAICFNTVEAKKKGLPKPTSWEDLTKPEYKGHIVMPNPASSGTGFLDVSAWLQMMGEDKGWDYMD 190 (334)
T ss_pred CCCCCCceEeeeeeEEEEEEehHHHHhcCCCCCCChHHhcCHHhcCCEecCCCccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 4445446777777889999999999888888999999999999999999987543222211 1234555554
Q ss_pred hh----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCC
Q 036082 85 NQ----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRG 153 (315)
Q Consensus 85 ~~----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~ 153 (315)
++ +++..+++.+||+.+++.|++++.....++.++++ +|++|...++++++|+|+++|++
T Consensus 191 ~l~~n~~~~~~s~~~~~~~v~~Ge~~i~~~~~~~~~~~~~~g~~v~~~~P~eG~~~~~~~~ai~k~a~~~e--------- 261 (334)
T TIGR03261 191 KLHKNIAVYTHSGSKPCKLAGMGEFPIGISMAYRALKEKKKGAPIDVVFPKEGLGWDIEATAIIKGSKNND--------- 261 (334)
T ss_pred HHHhccCccCCCChHHHHHHhCCCceEEEEecHHHHHHHhCCCCeEEEecCCCCeeeeeeeEEEcCCCCHH---------
Confidence 43 24566889999999999999998888888889999 99999999999999999999998
Q ss_pred CHHHHHHHHHHHhcHHHHHHHHh
Q 036082 154 LSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 154 ~~~~A~~FInfllspe~q~~~~~ 176 (315)
+|++||||++|||+|..+++
T Consensus 262 ---~A~~fidfllS~e~Q~~~~~ 281 (334)
T TIGR03261 262 ---AAKKLVDWSISDEAMELYAK 281 (334)
T ss_pred ---HHHHHHHHHcCHHHHHHHHh
Confidence 99999999999999999974
No 5
>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A ....
Probab=99.88 E-value=9e-22 Score=179.04 Aligned_cols=157 Identities=24% Similarity=0.412 Sum_probs=124.1
Q ss_pred CCCcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH--------HHHHHHH
Q 036082 10 AGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI--------AVQLNLA 81 (315)
Q Consensus 10 ~~~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a--------~~~~a~~ 81 (315)
....|++| |.+|+.++..+|+||++++.+.++ |+||+||++|+|+|+|++.+...+...+. ..+++.+
T Consensus 40 ~~~~d~~g--~~~~~~~~~~~i~yN~~~~~~~~~--P~sw~dL~~p~~~g~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 115 (242)
T PF13343_consen 40 ESFKDPDG--YWVPYGYGPVVIAYNTDKLKERDL--PTSWADLLDPKYKGKIALPDPNSDTGLAFLLALAEAYGEDAGWE 115 (242)
T ss_dssp GGGBHTTS--SSEEEEEEEEEEEEETTTSSSGGT--TSSGGGGGSGGGTTTEEEETTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCC--eEEEEEEEEEEEEEEhhhcCCCCC--CccHHHHHHHHhCCCEEECCccHHHHHHHHHHHHHHhhHHHHHH
Confidence 44567766 456999999999999999987433 89999999999999999998653221111 2344555
Q ss_pred HHHhh--------cHHHHHHHHcCC--EEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCC
Q 036082 82 LLANQ--------SAHHLKAFGIGD--VWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGR 150 (315)
Q Consensus 82 ~L~~~--------~~~~~~~~~~Ge--v~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~ 150 (315)
+|+++ +.+..+.+.+|| +.+++.|.+........+ ++++ +|++|+.+|+++++|+|+++|++
T Consensus 116 ~l~~l~~n~~~~~~~~~~~~~~~Ge~~~~i~~~~~~~~~~~~~~~-~i~~v~P~eG~~~~~~~~~i~k~a~~~~------ 188 (242)
T PF13343_consen 116 WLRELKANGATFSSSQAAQAVASGEGAVAIGISWYSRAAQAKEKG-PIKFVYPEEGTVVWPDGIAIVKGAPNPE------ 188 (242)
T ss_dssp HHHHHHHCBSSSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHCTTT-TEEEE-TTTGBEEEEEEEEEBTT-STHH------
T ss_pred HHHHHHhhcccccchhhhhHhhCCCceEEEEEehHHHHHHhhhcC-CeEEEecCCCcEEEEEEEEEeCCCCCHH------
Confidence 55543 357889999999 888888888877777667 9999 99999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCC
Q 036082 151 VRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPS 185 (315)
Q Consensus 151 ~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~ 185 (315)
+|++||||++|+++|..+++. ++..|.
T Consensus 189 ------~A~~fi~~lls~e~q~~~~~~--~~~~P~ 215 (242)
T PF13343_consen 189 ------AAKKFINFLLSPEAQKILAQA--GFEYPV 215 (242)
T ss_dssp ------HHHHHHHHHTSHHHHHHHHHH--CTSEES
T ss_pred ------HHHHHHHHHCCHHHHHHHHHh--CcCcCC
Confidence 999999999999999999853 334555
No 6
>PRK11622 hypothetical protein; Provisional
Probab=99.86 E-value=1.5e-20 Score=184.37 Aligned_cols=202 Identities=16% Similarity=0.129 Sum_probs=138.6
Q ss_pred CCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcC--cccCCceEeecCh---HHHhhHH-----------------
Q 036082 17 GKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--PELAGRISMVNSP---REVIGSI----------------- 74 (315)
Q Consensus 17 G~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d--p~~~Gki~~~d~~---~~~~g~a----------------- 74 (315)
++.|++||.++..+|+||++++++ +|+||+||++ ++++|++++.+++ ...+...
T Consensus 147 ~~~y~~P~~~~~~~l~YN~d~~~~----~P~Sw~dL~~~~~~~~Gk~~~~~p~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 222 (401)
T PRK11622 147 TEGLEAPWGGAQLVFIYDSARTPQ----PPQSPAELLEWAKANPGRFTYPRPPDFTGTAFLKQLLYELTGDPAALKQPVD 222 (401)
T ss_pred CCceEeeccCCeEEEEEchHhcCC----CCCCHHHHHHHHHHCCCcEecCCCCCCchhHHHHHHHHHhcCChHhhcCCCC
Confidence 355999999999999999999975 8999999998 6899999987542 1111000
Q ss_pred ------HHHHHHHHHHhh--------------cHHHHHHHHcCCEEEEEEehhh-HHHHHHcC---CCeEE-EeCCCcee
Q 036082 75 ------AVQLNLALLANQ--------------SAHHLKAFGIGDVWVAVGWSSD-VLPAVKHM---SNVAV-VPKSGASL 129 (315)
Q Consensus 75 ------~~~~a~~~L~~~--------------~~~~~~~~~~Gev~~~~~ws~~-~~~~~~~~---~~i~~-~PkeG~~~ 129 (315)
+.+++++.|.++ ..+..++|.+||+.|++.|++. +.....++ .++++ +|++|+..
T Consensus 223 ~~~~~~~~~~~~~~L~~L~~~~~~~g~~~~~~~~~~~~~~~~GEv~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~G~~~ 302 (401)
T PRK11622 223 KATFARVTAPLWDYLDELHPYLWREGKTFPASPAELDQLLADGELDLAMTFNPNHAQSKIANGELPASTRSFVFDDGTIG 302 (401)
T ss_pred HHHHHHhhhHHHHHHHHhCHHHHhccccCCCChHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCCCceeEEcCCCCeec
Confidence 123455555543 2255789999999999999874 44444544 25777 88899999
Q ss_pred eeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhh-hCCCCCCCchhhhccCCChhhhcCCCCCCcc
Q 036082 130 WADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQE-VIPGASPSALESTLVKLPGELLKGKPSLDTN 208 (315)
Q Consensus 130 ~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e-~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~ 208 (315)
+.++++|||+++|++ +|++||||++|||+|..+++. .+++.+++. ...||+++++....+++.
T Consensus 303 ~~~~~~Ipk~a~n~~------------~A~~finfllS~e~Q~~~~~~~~~g~~P~~~----~~~l~~e~~~~~~~~~~~ 366 (401)
T PRK11622 303 NTHFVAIPFNANAKA------------GAKVVANFLLSPEAQLRKADPAVWGDPSVLD----PQKLPEEQRAAFAALDLG 366 (401)
T ss_pred cceeEEeeCCCCCHH------------HHHHHHHHHcCHHHHHHhcchhhcCCCCcCC----hhhCCHHHHHHHhccccc
Confidence 999999999999998 999999999999999999842 235433332 237899887643322221
Q ss_pred cccCCCcHHHhhccccccCCCHHHHHHHHHHHHHh
Q 036082 209 LIAGVPPAEILARFEFLEPLSEATLSDMSGWEIGS 243 (315)
Q Consensus 209 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~W~~ 243 (315)
- ... +++.+.+... .+.++....+.+ .|.+
T Consensus 367 ~-~~~-~~~~~~~~~~--~~~~~~~~~~~~-~w~~ 396 (401)
T PRK11622 367 A-ATL-QPELLPPALP--EPHASWVEALEQ-EWQR 396 (401)
T ss_pred c-ccC-ChhHhcccCC--CCChHHHHHHHH-HHHH
Confidence 0 112 4444544322 223444455555 5554
No 7
>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein. This model finds the thiamine (and thiamine pyrophosphate) ABC transporter periplasmic binding protein ThiB in proteobacteria. Completed genomes having this protein (E. coli, Vibrio cholera, Haemophilus influenzae) also have the permease ThiP, described by TIGRFAMs equivalog model TIGR01253.
Probab=99.85 E-value=1.3e-20 Score=177.61 Aligned_cols=143 Identities=17% Similarity=0.212 Sum_probs=115.0
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH-----------HHHHHHHHHHhh
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI-----------AVQLNLALLANQ 86 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a-----------~~~~a~~~L~~~ 86 (315)
+.|++|+.++..+|+||++.+++ +|+||+||++++++|+|++.+.....++.+ +..++++.|.+.
T Consensus 96 ~~~~~p~~~~~~~i~yn~~~~~~----~P~sw~DL~~~~~~g~i~~~~p~~s~~g~~~~~~~~~~~g~~~~~~~~~L~~~ 171 (309)
T TIGR01276 96 NDTFVPFDYGYFAFVYDKNKLKN----PPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKK 171 (309)
T ss_pred CCeEEEEeeEEEEEEECccccCC----CCCCHHHHhccccCCeEEeeCCCCCcHHHHHHHHHHHHcCccHHHHHHHHHHc
Confidence 34899999999999999999864 799999999999999999987554333322 123555666443
Q ss_pred -------cHHHHHHHHcCCEEEEEEehhhHHHH--HHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHH
Q 036082 87 -------SAHHLKAFGIGDVWVAVGWSSDVLPA--VKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSP 156 (315)
Q Consensus 87 -------~~~~~~~~~~Gev~~~~~ws~~~~~~--~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~ 156 (315)
.++...+|.+|+++|++.|+++.... ...+.++.+ +|++|...++++++|+|+++|++
T Consensus 172 ~~~~~~~~~~~~~~~~~Ge~~i~i~~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~~ai~k~a~n~e------------ 239 (309)
T TIGR01276 172 TVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPE------------ 239 (309)
T ss_pred CceeCCChHHHHHHHHcCCcCEEEecCCcHHHHhhcccCcccceEecCCCCEeEEEEEEEeCCCCCHH------------
Confidence 24566789999999999998765432 223446777 88999999999999999999998
Q ss_pred HHHHHHHHHhcHHHHHHHHh
Q 036082 157 LIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 157 ~A~~FInfllspe~q~~~~~ 176 (315)
+|++||||++|||+|..++.
T Consensus 240 ~A~~Fidflls~e~Q~~~~~ 259 (309)
T TIGR01276 240 LAQKFLQFLVSPAFQNAIPT 259 (309)
T ss_pred HHHHHHHHHcCHHHHHHHHh
Confidence 99999999999999999874
No 8
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=99.84 E-value=5.3e-20 Score=178.37 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=109.1
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhH-----H-H----HHHHHHHHHhh---
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGS-----I-A----VQLNLALLANQ--- 86 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~-----a-~----~~~a~~~L~~~--- 86 (315)
|..|+.+++.+|+||++++++ +|+||+|||+|+|+|+|++.++.....+. . . -+++++.|.++
T Consensus 132 ~~~p~~~~~~~i~YN~d~~~~----~P~sw~DL~~p~~~Gki~~~~p~~s~~~~~~l~~~~~~~G~~d~a~~~l~~l~~n 207 (367)
T TIGR03227 132 LWAPFVKNYFSFAINPKLLKS----APASFADLLDADFKGKLAYSNPAQAADGMAVIILAFALFGSEDAAFAYLAKLEAN 207 (367)
T ss_pred eEEEEeeceeEEEEchhhcCC----CCCCHHHHhChhccCCEeecCCCcCccHHHHHHHHHHHcCCchHHHHHHHHHHhc
Confidence 346999999999999999975 89999999999999999998754322211 1 1 14566666544
Q ss_pred -------cHHHHHHHHcCCEEEEEEehhh-HHHHHHcCCCeEE-EeCCC------ceeeeeeEEEeCCCCCcccccCCCC
Q 036082 87 -------SAHHLKAFGIGDVWVAVGWSSD-VLPAVKHMSNVAV-VPKSG------ASLWADLWAIPAASRLETKQIGGRV 151 (315)
Q Consensus 87 -------~~~~~~~~~~Gev~~~~~ws~~-~~~~~~~~~~i~~-~PkeG------~~~~~d~~~I~k~s~~~~~~~~~~~ 151 (315)
+....++|.+|++.++.++... .......+.+|++ +|++| +..+..+++|+|+++|++
T Consensus 208 ~~~~~~~~~~~~~~~~~Gev~i~~g~~~~~~~~~~~~g~~i~~~~P~~g~g~~~~~~~~~~~~~I~k~a~n~e------- 280 (367)
T TIGR03227 208 NKFHSAGTGKLNALLNKGEIAVANGDLQMDLADAEHGGLNIKIFFPAADAGEPPSAFAIPYAIGLVKGAPNQD------- 280 (367)
T ss_pred CCccCCCchhHHHHHhcCceEEEccHHHHHHHHHHhcCCCeEEEeecCCCCCCCcccccceeEEEecCCCCHH-------
Confidence 2244567899999987543321 2223344678999 99875 335568899999999998
Q ss_pred CCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCC
Q 036082 152 RGLSPLIHQWIEFCLQTARALPFKQEVIPGASPS 185 (315)
Q Consensus 152 ~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~ 185 (315)
+|++||||++|||+|..+++ ..+ ..|.
T Consensus 281 -----~A~~Fidfllspe~Q~~~a~-~~~-~~P~ 307 (367)
T TIGR03227 281 -----AGKKLIDFLLSADAQAKVPD-LSF-GIPG 307 (367)
T ss_pred -----HHHHHHHHHcCHHHHHHHHh-ccc-CCCC
Confidence 99999999999999999985 333 3554
No 9
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily. The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).
Probab=99.84 E-value=4e-20 Score=174.10 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=116.6
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH------------HHHHHHHHHHhh
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI------------AVQLNLALLANQ 86 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a------------~~~~a~~~L~~~ 86 (315)
.|++|+.++..+|+||++++++ +|+||+||++++++|+|++.+......+.+ +..+.++.|.+.
T Consensus 97 ~~~~p~~~~~~~i~yn~~~~~~----~P~sw~dL~~~~~~g~i~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~~~ 172 (304)
T TIGR01254 97 ATFLPFDYGYVAFVYDKNKLQN----PPQSLKELVEPEQDLLVIYQDPRTSSPGLGLLLWMQSVYGEDDAPQAWKQLRKK 172 (304)
T ss_pred CeEEEEeeeeEEEEEchHHhcC----CCCCHHHHhCHHhcCcEEecCCCCChhHHHHHHHHHHhcChHHHHHHHHHHHhC
Confidence 4889999999999999999975 799999999999999999987543332221 111334444433
Q ss_pred -------cHHHHHHHHcCCEEEEEEehhhH-H-HHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHH
Q 036082 87 -------SAHHLKAFGIGDVWVAVGWSSDV-L-PAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSP 156 (315)
Q Consensus 87 -------~~~~~~~~~~Gev~~~~~ws~~~-~-~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~ 156 (315)
..+....|.+|++.|+++|+++. . ....++.++.+ +|++|..+|.++++|+++++|++
T Consensus 173 ~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ai~k~a~n~e------------ 240 (304)
T TIGR01254 173 TVTVTKGWSEAYGTFLGGEYDLVLSYATSPAYHVLFEKKDNYAALNFSEGHYLQVEGAARLKGAKQPE------------ 240 (304)
T ss_pred CeecCCCCHHHHHHHhcCCccEEEEeccchhhhhhhccCCceeEEecCCCCEEEEEEEEEECCCCCHH------------
Confidence 23566789999999999998763 3 23344567888 88899999999999999999998
Q ss_pred HHHHHHHHHhcHHHHHHHHhhhCCCCCCCc
Q 036082 157 LIHQWIEFCLQTARALPFKQEVIPGASPSA 186 (315)
Q Consensus 157 ~A~~FInfllspe~q~~~~~e~~~~~~P~~ 186 (315)
+|++|||||+|||+|..+++ ..+. .|.+
T Consensus 241 ~A~~fi~fllspe~q~~~a~-~~~~-~P~~ 268 (304)
T TIGR01254 241 LADKFVQFLLSPAVQNAIPT-GNWM-YPVV 268 (304)
T ss_pred HHHHHHHHHcCHHHHHHHHh-cCee-ccCC
Confidence 99999999999999999985 3333 4543
No 10
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=99.82 E-value=1.7e-19 Score=171.91 Aligned_cols=141 Identities=18% Similarity=0.244 Sum_probs=111.4
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH------H-----HHHHHHHHHhh--
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI------A-----VQLNLALLANQ-- 86 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a------~-----~~~a~~~L~~~-- 86 (315)
|++||.++..+|+||++++++ +|+||+||++++++|+|++.+......+.. . -.+.++.|.+.
T Consensus 119 ~~~~~~~~~~~l~yn~~~~~~----~P~sw~DL~~~~~~g~i~~~dp~~s~~~~~~~~~~~~~~g~~~~~~~~~L~~~~~ 194 (330)
T PRK11205 119 TFVPYDYGYFAFVYDKEKLKN----PPKSLKELVESDQNWKVIYQDPRTSTPGLGLLLWMKKVYGDDAPQAWQKLAKKTV 194 (330)
T ss_pred ceeeEeeeeEEEEEcccccCC----CCCCHHHHhChhhcCCEEecCCCCCcHHHHHHHHHHHhcCchHHHHHHHHHhCCe
Confidence 689999999999999999975 899999999999999999986543222211 0 01334444433
Q ss_pred -----cHHHHHHHHcCCEEEEEEehhh-HHHHHHc-CCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHH
Q 036082 87 -----SAHHLKAFGIGDVWVAVGWSSD-VLPAVKH-MSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLI 158 (315)
Q Consensus 87 -----~~~~~~~~~~Gev~~~~~ws~~-~~~~~~~-~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A 158 (315)
.++..++|.+|+++++++|+++ ......+ +.++.+ +|++|...++++++|+|+++|++ +|
T Consensus 195 ~~~~~~~~~~~~~~~Ge~~~~i~~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~~ai~k~a~n~e------------~A 262 (330)
T PRK11205 195 TVTKGWSEAYGLFLKGEADLVLSYTTSPAYHIIAEKKDNYAAANFSEGHYLQVEVAARTAASKQPE------------LA 262 (330)
T ss_pred eeCCChHHHHHHHHcCCccEEEeCCCcHHHHHhhccCCceeEEEcCCCCeEEEEEEEEeCCCCCHH------------HH
Confidence 2456688999999999999864 3333333 446777 88899999999999999999998 99
Q ss_pred HHHHHHHhcHHHHHHHHh
Q 036082 159 HQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 159 ~~FInfllspe~q~~~~~ 176 (315)
++||||++|||+|..+++
T Consensus 263 ~~Fi~fllS~e~Q~~~~~ 280 (330)
T PRK11205 263 QKFLQFMVSPAFQNAIPT 280 (330)
T ss_pred HHHHHHHcCHHHHHHhhh
Confidence 999999999999999975
No 11
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A ....
Probab=99.78 E-value=3.1e-18 Score=157.32 Aligned_cols=167 Identities=19% Similarity=0.301 Sum_probs=133.6
Q ss_pred CCCeEeeeeeece-EEEEEecccccccCCCCCCChHhhcC--cccCCceEeecChHHHhhHH---------------HHH
Q 036082 16 RGKICAAPYRWGT-VVIAYKKSKFRKHNLAPIEDWKDLWR--PELAGRISMVNSPREVIGSI---------------AVQ 77 (315)
Q Consensus 16 dG~~Y~vP~~~g~-~gi~YN~d~~~~~Gl~~P~SW~dL~d--p~~~Gki~~~d~~~~~~g~a---------------~~~ 77 (315)
+|++|++|+.+++ .+++||+++++++ +|+||++|++ ++++|++.+.+......... .+.
T Consensus 81 ~G~~y~~P~~~~~~~~~~yn~d~~~~~---~p~t~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 157 (281)
T PF13416_consen 81 DGKLYGVPFDYGTPYGLYYNKDLLKKA---PPKTWDELLEVAKKLKGKYGFPDPASGWMQWALIAGGKSFDDDGTSENFV 157 (281)
T ss_dssp TTEESEEEEEEEEEEEEEEETTTHSHS---GTSSHHHHHHHHHHHTTHEEEESCHHHHHHHHHHHTTSECTEETTSHHHH
T ss_pred CCeEEEEEEeeccceEEEEchhhcccC---CcccHHHHhhhHHHhcccccccccchhHhhhhhhccCCchhcccCCHHHH
Confidence 4999999999997 8999999999974 8999999999 78999998877654432111 145
Q ss_pred HHHHHHHhh---------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCccccc
Q 036082 78 LNLALLANQ---------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQI 147 (315)
Q Consensus 78 ~a~~~L~~~---------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~ 147 (315)
++++.|+++ ..+..+.|.+|++.+.+.|++.+..+.+.+.++++ +|++|...+..+++|+++++|++
T Consensus 158 ~~~~~~~~l~~~~~~~~~~~~~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~~~~~~--- 234 (281)
T PF13416_consen 158 EALEFLKELYDNGYFYGSGDDARQLFASGKVAMIIGGSWSISNLQKAGPDFGVAPPKDGTFVGGNGFAIPKNSKNPE--- 234 (281)
T ss_dssp HHHHHHHHHHHTTSEETSHHHHHHHHHTTSESEEEEEGHHHHHHHHTTTTEEEEECTTTEEEEEEEEEEBTTSSTHH---
T ss_pred HHHHHHHHHHHhcccccchhHHHHHhcCCCeeeecccHhHHHHHHHhCCCeeEecCccccccCcceEEEeCCCChHH---
Confidence 667766654 34678899999999999999999888888889999 99999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhc
Q 036082 148 GGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLK 200 (315)
Q Consensus 148 ~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~ 200 (315)
.++|.+||+|+++||.|..+++ ..++.+++ +.+. .++++.+
T Consensus 235 -------~~aA~~fl~~l~s~e~q~~~~~-~~g~~p~~--~~~~--~~~~~~~ 275 (281)
T PF13416_consen 235 -------AEAAWEFLKFLTSPEGQAEWAE-ATGYLPVN--KDVY--ESDEYKK 275 (281)
T ss_dssp -------HHHHHHHHHHHTSHHHHHHHHH-HHTSEESB--HHHH--HSHHHHT
T ss_pred -------HHHHHHHHHHHcCHHHHHHHHH-HhCCCCCC--hhhc--CCHHHhh
Confidence 1239999999999999999985 56765444 3332 2555554
No 12
>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional
Probab=99.74 E-value=3e-17 Score=157.78 Aligned_cols=154 Identities=17% Similarity=0.256 Sum_probs=110.6
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhH------H---HHHHHHHH
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGS------I---AVQLNLAL 82 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~------a---~~~~a~~~ 82 (315)
..|++|. .+|+.++..+|+||++++++ +|+||+||++++++|+|++.+......+. . ..+++++.
T Consensus 121 ~~d~~g~--~~~~~~~~~~l~Yn~~~~~~----~P~sw~dL~~~~~~gki~~~~p~~s~~g~~~~~~~~~~~G~~~a~~~ 194 (349)
T PRK15046 121 AKDADGT--YAPFVNNYLSFIYNPKVLKT----APATWADLLDPKFKGKLQYSTPGQAGDGTAVLLLTFHLMGKDKAFDY 194 (349)
T ss_pred hcCCCCC--EEeeecceeEEEEchhhccC----CCCCHHHHhCHHhCCCEEecCCCcCccHHHHHHHHHHHhCchHHHHH
Confidence 3466674 47999999999999999975 89999999999999999987643221111 1 11445565
Q ss_pred HHhh----------cHHHHHHHHcCCEEEEEEehh-hHHHHHHcCCCeEE-EeCC--C---ceeeeeeEEEeCCCCCccc
Q 036082 83 LANQ----------SAHHLKAFGIGDVWVAVGWSS-DVLPAVKHMSNVAV-VPKS--G---ASLWADLWAIPAASRLETK 145 (315)
Q Consensus 83 L~~~----------~~~~~~~~~~Gev~~~~~ws~-~~~~~~~~~~~i~~-~Pke--G---~~~~~d~~~I~k~s~~~~~ 145 (315)
|+++ .....+.|.+|++.++.++.. ......+.++++++ +|++ | +...+.+++|+++++|++
T Consensus 195 l~~l~~~~~~~~~~~~~~~~~~~~Ge~~~~~g~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~aI~~~s~n~~- 273 (349)
T PRK15046 195 LAKLQANNVGPSKSTGKLTPLVSKGEIYVANGDLQMNLAQAEHGGPNVKIFFPAKDGGERSTFALPYVIGLVKGAPNSE- 273 (349)
T ss_pred HHHHHHhCCCCCCCcchhhHHhhcCceEEeccHHHHHHHHHhcCCCceEEEecCCCCCCcceeeccceeEEecCCCCHH-
Confidence 5543 124457899999988754322 12223345678999 9986 3 333457899999999998
Q ss_pred ccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCC
Q 036082 146 QIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPS 185 (315)
Q Consensus 146 ~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~ 185 (315)
+|++||||++|||+|..+++ .. +..|.
T Consensus 274 -----------~A~~Fi~fllS~e~Q~~~a~-~~-~~~P~ 300 (349)
T PRK15046 274 -----------NGKKLIDFLLSKEAQTKVSD-MA-WGIPV 300 (349)
T ss_pred -----------HHHHHHHHHhCHHHHHHHHh-hc-cCCCC
Confidence 99999999999999999985 32 34554
No 13
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=3.2e-15 Score=141.17 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=109.0
Q ss_pred eeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHh---hHHH-----HHHHHHHHHhh----------
Q 036082 25 RWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVI---GSIA-----VQLNLALLANQ---------- 86 (315)
Q Consensus 25 ~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~---g~a~-----~~~a~~~L~~~---------- 86 (315)
..+..+++||++.+++..++.|+||+||.+|+|+|+|.+.+...... .+.. .+.+++.|...
T Consensus 83 ~~~~~~~~~n~~~~~~~~~~~P~~w~DL~~p~~kg~i~~~~p~~s~~~~~~~~~~~~~G~~~~~~~l~~l~~n~~~~~~~ 162 (299)
T COG1840 83 YVGPLVFAVNTDYNKDLLKPVPKSWADLAKPEYKGKVQMADPTSSGTAYAALLALQAYGEEKGWAYLKGLAANLATYTGG 162 (299)
T ss_pred eEeeEEEEEehhhccccCCCCCCCHHHhcCHhhcCCccccCCcccHHHHHHHHHHHhcChHHHHHHHHHHHHhcccccCC
Confidence 67889999999999886555699999999999999997766543221 1111 13334444332
Q ss_pred -cHHHHHHHHcCCEEEEEEehhh--HHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHH
Q 036082 87 -SAHHLKAFGIGDVWVAVGWSSD--VLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWI 162 (315)
Q Consensus 87 -~~~~~~~~~~Gev~~~~~ws~~--~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FI 162 (315)
+....+.+..||+.+++++... ......++.++++ +|++|+.+.+..++|.|+++|++ +|++||
T Consensus 163 ~~~~~~~~va~Ge~~vg~~~~~~~~~~~~~~~~~~v~iv~P~~G~~v~~~~vaiik~a~~~e------------~Ak~fi 230 (299)
T COG1840 163 SSSVVAKVVAGGEAAVGLGNLYYGAYAKDKAKGAPVEVVYPEEGTGVNPSGVALLKKAKNPE------------AAKLFI 230 (299)
T ss_pred CcHHHHHHhhcCCceEEEEeeccHHHHHhhccCCceEEEecCCCceeeeeeeeeecCCCCHH------------HHHHHH
Confidence 3345668899999999999985 3334445668999 99999999999999999999998 999999
Q ss_pred HHHhcHHHHHHHHhh
Q 036082 163 EFCLQTARALPFKQE 177 (315)
Q Consensus 163 nfllspe~q~~~~~e 177 (315)
+|++|+|+|..+.+.
T Consensus 231 d~llS~egQ~~~~~~ 245 (299)
T COG1840 231 DFLLSKEGQEILAKK 245 (299)
T ss_pred HHHcCHHHHHHHHhc
Confidence 999999999877643
No 14
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=99.63 E-value=1.8e-15 Score=142.35 Aligned_cols=159 Identities=23% Similarity=0.299 Sum_probs=121.2
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHH------------HHHHHHHHHhh-
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIA------------VQLNLALLANQ- 86 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~------------~~~a~~~L~~~- 86 (315)
+.+||.+|..+|+||++++++ ||+|.+||..|+|+++|.+.|+..+..|.+- .-+++..|++.
T Consensus 123 f~~P~DyGy~a~vYd~~~~~~----ppksL~dL~~~~y~~~ii~qdPrtSspGl~fLlW~~svyg~d~~~~~W~kL~~~~ 198 (336)
T COG4143 123 FALPYDYGYFAFVYDKTKLKN----PPKSLKDLVEPEYAGKIIYQDPRTSSPGLGFLLWTISVYGEDGAPEAWAKLADNG 198 (336)
T ss_pred cccccccceEEEEEchHHhcC----CcccHHHhcCccccCcEEecCCCCCCccHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 369999999999999999987 8999999999999999999887655555441 13344555544
Q ss_pred ------cHHHHHHHHcCCEEEEEEehhhHHHHH-HcC-CCe-EE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHH
Q 036082 87 ------SAHHLKAFGIGDVWVAVGWSSDVLPAV-KHM-SNV-AV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSP 156 (315)
Q Consensus 87 ------~~~~~~~~~~Gev~~~~~ws~~~~~~~-~~~-~~i-~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~ 156 (315)
-++...+|..||+.|.++|+.+-.... .++ .+. .. +| ||..+.+++.++.|+++|++
T Consensus 199 v~v~~gWSeaY~aFt~GEap~VLSYtTspay~~~~~~~~~~~a~~f~-eG~ylqiEgaa~~k~~knpe------------ 265 (336)
T COG4143 199 VTVTKGWSEAYGAFTKGEAPLVLSYTTSPAYHVYPEKKDRYAAALFP-EGHYLQVEGAAVLKGAKNPE------------ 265 (336)
T ss_pred eEecCcHHHHHHHHhCCccceEEEeccCcchhcccccccccchhcCC-CCceeEEEeeeeecCCCCHH------------
Confidence 133445999999999999987654332 222 222 23 44 68999999999999999999
Q ss_pred HHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhc
Q 036082 157 LIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLK 200 (315)
Q Consensus 157 ~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~ 200 (315)
+|.+||+||+|||.|..+...++. .|.+. . ..||+.+..
T Consensus 266 LA~~F~~FmlS~e~Q~~ip~~nwm--~Pa~~-~--~~Lp~~f~~ 304 (336)
T COG4143 266 LADKFLQFMLSPEFQDAIPTTNWM--YPAVK-N--VPLPAVFDA 304 (336)
T ss_pred HHHHHHHHHhCHHHHhhCCcccee--eecCC-C--CcCCHHHHh
Confidence 999999999999999999765544 45532 1 478888775
No 15
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=99.59 E-value=3.5e-14 Score=139.35 Aligned_cols=156 Identities=14% Similarity=0.187 Sum_probs=103.3
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--ccC--Cc--eEeec-ChHHH--hhHH------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--GR--ISMVN-SPREV--IGSI------------ 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~--Gk--i~~~d-~~~~~--~g~a------------ 74 (315)
+|++||||+..++.+++||+++|+++|+++|+||++|.+. +++ |. +.+.. ...+. +.+.
T Consensus 148 ~g~~ygvP~~~~~~~l~yNkdl~~~aG~~~P~Twde~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 227 (437)
T TIGR03850 148 DGKTYLAPMFYSPTGLFYNKTLFEEKGWEVPTTWDEMFALGDKAKAEGISLFTYPTTGYFDAFFYALLAEAGGDDFFNKA 227 (437)
T ss_pred CCeEEEEEeecceEEEEEcHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCceeecCCcchHHHHHHHHHHHhcCHHHHHHH
Confidence 4999999999999999999999999999999999999874 332 32 11111 00000 0000
Q ss_pred -----------HHHHHHHHHHhh---------c-------HHHHHHHHcCCEEEEEEehhhHHHHHHc----CCCeEE--
Q 036082 75 -----------AVQLNLALLANQ---------S-------AHHLKAFGIGDVWVAVGWSSDVLPAVKH----MSNVAV-- 121 (315)
Q Consensus 75 -----------~~~~a~~~L~~~---------~-------~~~~~~~~~Gev~~~~~ws~~~~~~~~~----~~~i~~-- 121 (315)
...++++.+.++ + .+..+.|.+|++.+.+.++..+..+... +.++++
T Consensus 228 ~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~~~ 307 (437)
T TIGR03850 228 MNYEEGIWDTEEAKKAFDTVGKLATYTEPTTVANANNQDFTKNQQLVLDNKALFMPNGTWVVGEMKDAPRADGFEWGMTA 307 (437)
T ss_pred hcCCCCccCCHHHHHHHHHHHHHHHhcCCCcccccccccccHHHHHHHcCCeEEEeCCcchHHHhhcCCCCCCCceeeee
Confidence 123444444332 0 1245689999998877655444443332 235665
Q ss_pred EeC--CC----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCC
Q 036082 122 VPK--SG----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPS 185 (315)
Q Consensus 122 ~Pk--eG----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~ 185 (315)
+|. +| ...+..+++|+++++|++ +|.+||+|++++|.+..+. + .++.+|.
T Consensus 308 ~P~~~~~~~~~~~~~~~~~~v~~~s~~~~------------aA~~Fi~~l~s~e~~~~~~-~-~g~~~p~ 363 (437)
T TIGR03850 308 LPAVKEGGDRYSYTFFEQMWIPAAAKNKD------------LAKEFIAFLYSDEAAKIFA-K-SGAVQPV 363 (437)
T ss_pred CCccCCCCCcccccCcceeEEECCCCCHH------------HHHHHHHHHhCHHHHHHHH-h-cCCcCCc
Confidence 674 22 234557899999999998 9999999999999998755 3 4665665
No 16
>TIGR03851 chitin_NgcE carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein. Members of this protein family are the substrate-binding protein, a lipid-anchored protein of Gram-positive bacteria in all examples found so far, that include NgcE of the chitin-degrader, Streptomyces olivaceoviridis, and close homologs from other species likely to share the same function. NgcE binds both N-acetylglucosamine and the chitin dimer, N,N'-diacetylchitobiose.
Probab=99.55 E-value=4.5e-14 Score=139.64 Aligned_cols=156 Identities=16% Similarity=0.217 Sum_probs=101.5
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCce--EeecC--hH---HHh-hH------H---
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRI--SMVNS--PR---EVI-GS------I--- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki--~~~d~--~~---~~~-g~------a--- 74 (315)
+|++||||+..++.+++||+++|+++|+++|+||++|.+- ++ +|.. .+... +. ..+ .. .
T Consensus 150 dG~~ygvP~~~~~~~l~YNkdl~~~aGl~~P~Twde~~~~~~~l~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~gg~~~~ 229 (450)
T TIGR03851 150 DGKPYALNYVYTVYGLWYSATLFEENGWTPPKTWDEFLALGEEAKAKGIAPFAYAGKHAPYYYRELLLDSAAKIGGDEVV 229 (450)
T ss_pred CCEEEEEeecceeeEEEEcHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCchhHHHHHHHHHHHhcCHHHH
Confidence 4999999999999999999999999999999999999863 22 2322 22111 10 000 00 0
Q ss_pred --------------HHHHHHHHHHhh--------------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCC---CeEE--
Q 036082 75 --------------AVQLNLALLANQ--------------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMS---NVAV-- 121 (315)
Q Consensus 75 --------------~~~~a~~~L~~~--------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~---~i~~-- 121 (315)
...++++.+.++ ..+..+.|.+|++.|.+.++.....+....+ ++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~p 309 (450)
T TIGR03851 230 KDIDNLEDGAWKHPAVKAAFTAWEELVKKGYILPGGAGLDHTQSQTAWNQGKAAFYPSGSWLENEMKSQTPADFEMTGAP 309 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHcCCcCCCCCCCCcHHHHHHHHCCCcEEEEcCccHHHHHhhcCCCCcceeeee
Confidence 012344444433 1245678999999988765443333333222 3443
Q ss_pred EeC--CC--ce---ee---eeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCC
Q 036082 122 VPK--SG--AS---LW---ADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPS 185 (315)
Q Consensus 122 ~Pk--eG--~~---~~---~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~ 185 (315)
+|. .| .+ ++ ..+++|+++++|++ +|++||+||+++|+|..+.+ ..++ .|.
T Consensus 310 ~P~~~~~~~~~~~~~~~~~g~~~~I~~~s~~~~------------aA~~fl~~l~s~e~~~~~~~-~~g~-ip~ 369 (450)
T TIGR03851 310 TPSLTASDKLPYGALHAAAGEPFIVPAKAKNPA------------GGLEYLRIMLSKEGAANFTE-LTKS-LTV 369 (450)
T ss_pred cCCCCCcccCCcccccccCCceeEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHH-hcCC-Ccc
Confidence 453 11 11 11 46799999999998 99999999999999999985 3443 443
No 17
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=99.46 E-value=2.6e-12 Score=124.53 Aligned_cols=145 Identities=20% Similarity=0.235 Sum_probs=98.4
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEee-cC--hHHHhhH---------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMV-NS--PREVIGS--------------- 73 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~-d~--~~~~~g~--------------- 73 (315)
||++||||+...+.+++||+++|++ +|+||+||.+. ++ +|+..+. +. ....+.+
T Consensus 126 dg~~YgvP~~~~~~~l~ynkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 201 (396)
T PRK09474 126 NGKLIGYPIAVEALSLIYNKDLVPT----PPKTWEEIPALDKELKAKGKSAIMWNLQEPYFTWPLIAADGGYAFKFENGG 201 (396)
T ss_pred CCEEEEEeeeccceeEEEehhhccC----CCcCHHHHHHHHHHHHhCCCceeeccCCchHhHHHHHHccCCeeeccCCCC
Confidence 4899999999999999999999985 89999999863 33 2432221 10 0000000
Q ss_pred ----------HHHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCC-C---
Q 036082 74 ----------IAVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKS-G--- 126 (315)
Q Consensus 74 ----------a~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pke-G--- 126 (315)
....++++.+.+. ..+..+.|.+|++.|.+.++..+......+.++++ +|.. |
T Consensus 202 ~~~~~~~~~~~~~~~a~~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~ 281 (396)
T PRK09474 202 YDVKDVGVNNAGAKAGLQFLVDLVKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDKSGINYGVTVLPTFNGKPS 281 (396)
T ss_pred CCccccCcCCHHHHHHHHHHHHHHHcCCCCCCCChhHHHHHHhcCCeeEEEcCCcchHHHHhcCCceEEEeCCCCCCCCC
Confidence 0123445444433 11345789999999988766555555555566776 6742 2
Q ss_pred -ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHh
Q 036082 127 -ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQ 176 (315)
Q Consensus 127 -~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~ 176 (315)
......+++|+++++|++ +|.+||+ |+++++.+..+.+
T Consensus 282 ~~~~~~~~~~i~~~s~~~e------------aA~~fi~~~l~s~~~~~~~~~ 321 (396)
T PRK09474 282 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLETVNK 321 (396)
T ss_pred CceeeeeEEEEeCCCCCHH------------HHHHHHHHHhcCHHHHHHHhh
Confidence 123445788999999998 9999996 9999999988874
No 18
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional
Probab=99.37 E-value=1.5e-11 Score=121.41 Aligned_cols=156 Identities=20% Similarity=0.235 Sum_probs=97.1
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCC---CCCChHhhcCc--ccC--Cce-Eee---cChHH------H--------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLA---PIEDWKDLWRP--ELA--GRI-SMV---NSPRE------V-------- 70 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~---~P~SW~dL~dp--~~~--Gki-~~~---d~~~~------~-------- 70 (315)
+|++||||+..++.+++||+++|+++|++ +|+||++|.+. +++ |.. .+. ..... .
T Consensus 134 ~G~~YglP~~~~~~~l~YNkdlf~~aGi~~~~~P~Twde~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (438)
T PRK10974 134 TGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLAAYAAKLRAAGMKCGYASGWQGWIQLENFSAWHGLPFASK 213 (438)
T ss_pred CCcEEEeeccCCCceEEEcHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCCcccccccccchhhhhHHHhcCchhccc
Confidence 49999999999999999999999999985 59999999863 232 211 110 00000 0
Q ss_pred ----------hhHH--HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHc-CCCeEE--EeC
Q 036082 71 ----------IGSI--AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKH-MSNVAV--VPK 124 (315)
Q Consensus 71 ----------~g~a--~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~-~~~i~~--~Pk 124 (315)
..+. ...++++.+.++ ..+..+.|.+|++.|.+.+++.+..+... ..++++ +|.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~a~~~~gsw~~~~~~~~~~~~~~v~~~P~ 293 (438)
T PRK10974 214 NNGFDGTDAVLEFNKPEQVKHIALLEEMNKKGDFTYVGRKDESTEKFYNGDCAITTASSGSLANIRKYAKFNYGVGMMPY 293 (438)
T ss_pred CCCcCCCcceEEeCCHHHHHHHHHHHHHHHCCCcccCCCcchHhhHhhcCcceEEecChHHHHHHHhcCCceeeEEeecc
Confidence 0000 123444444432 12345789999999988887666555432 224444 563
Q ss_pred C----Cc----eeeeeeEEEeCCC--CCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCC
Q 036082 125 S----GA----SLWADLWAIPAAS--RLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (315)
Q Consensus 125 e----G~----~~~~d~~~I~k~s--~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P 184 (315)
. |. .+....+.|++.. +|++ +|.+||+|+++++.|..++. ..++.++
T Consensus 294 ~~~~~g~~~~~~~gg~~~~~~~~~~~~~~e------------aA~~fi~fl~s~e~~~~~~~-~~g~lP~ 350 (438)
T PRK10974 294 DADVKGAPQNAIIGGASLWVMQGKDKETYK------------GVAKFLDFLAKPENAAEWHQ-KTGYLPI 350 (438)
T ss_pred CCCcCCCCCCCCCCCceEEEECCCCHHHHH------------HHHHHHHHHcCHHHHHHHHH-hcCCCCC
Confidence 1 22 2223445565532 2445 89999999999999998874 4565443
No 19
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein. The model describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represent hydrophylioc periplasmic-binding protein in gram-negative organisms and its counterpart in gram-positive organisms is a lipoprotein. The other components of the system include the ModB, an integral membrane protein and ModC the ATP-binding subunit. Invariably almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.
Probab=99.36 E-value=3.8e-12 Score=113.81 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=96.5
Q ss_pred eeeceEEEEEecccccccCCCCCCChHhhcCccc-CCceEeecChHHHhhHHH---HHH--HHHHHHhh------cHHHH
Q 036082 24 YRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPEL-AGRISMVNSPREVIGSIA---VQL--NLALLANQ------SAHHL 91 (315)
Q Consensus 24 ~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~-~Gki~~~d~~~~~~g~a~---~~~--a~~~L~~~------~~~~~ 91 (315)
+..+..+|+||++ . .|+||+||. +.+ +++|.+.|+.....|... ++. .++.|++. ..+..
T Consensus 71 ~~~~~~~l~~~~~---~----~~~s~~dL~-~~~~~~~i~~~~P~~~~~g~~~~~~~~~~g~~~~l~~n~~~~~~~~~~~ 142 (216)
T TIGR01256 71 YAGNKLVLISPKN---R----VVDDLDILK-KWVADKRVAIGDPKHAPYGAAAKEVLQKLGLWETLKKKLVYGEDVRQAL 142 (216)
T ss_pred EEccEEEEEEECC---C----CcCcHHHHh-hcccCCeEEecCCCcCcChHHHHHHHHHCCChhhhhhheeecCcHHHHH
Confidence 5556778999987 2 589999997 666 789999875544333321 111 12223222 24567
Q ss_pred HHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHH
Q 036082 92 KAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTAR 170 (315)
Q Consensus 92 ~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~ 170 (315)
+.+.+|++++++.|.+++.... +..+.+ +|+++...+..+++|+|+++|++ +|++||+|++|||+
T Consensus 143 ~~~~~Ge~~~~~~~~~~~~~~~--~~~~~~~~P~~~~~~~~~~~ai~k~a~~~~------------~A~~fi~fl~s~e~ 208 (216)
T TIGR01256 143 QFVETGNAPAGIVALSDVIPSK--KVGSVATFPEDLYKPIRYPAVIVKGGKNNA------------AAKAFIDYLKSPEA 208 (216)
T ss_pred HHHHcCCCCEEeeehhhhcccC--CccEEEEeCccccCCccccEEEEECCCChH------------HHHHHHHHHcCHHH
Confidence 8899999999999998776543 223446 99998877778999999999998 99999999999999
Q ss_pred HHHHHh
Q 036082 171 ALPFKQ 176 (315)
Q Consensus 171 q~~~~~ 176 (315)
|..+.+
T Consensus 209 q~~~~~ 214 (216)
T TIGR01256 209 KEILRK 214 (216)
T ss_pred HHHHHH
Confidence 998873
No 20
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [], which generally correlate with the nature of the solute bound. Family 1 includes the maltose/maltodextrin-binding proteins of Enterobacteriaceae (gene malE) [] and Streptococcus pneumoniae malX; multiple oligosaccharide binding protein of Streptococcus mutans (gene msmE); Escherichia coli glycerol-3-phosphate-binding protein; Serratia marcescens iron-binding protein (gene sfuA) and the homologous proteins (gene fbp) from Haemophilus influenzae and Neisseria; and the E. coli thiamine-binding protein (gene tbpA).; GO: 0005215 transporter activity, 0006810 transport; PDB: 3CFZ_A 2THI_A 3THI_A 4THI_A 1O7T_C 1D9Y_A 1URG_A 1URS_A 1URD_B 3OMB_A ....
Probab=99.26 E-value=8e-11 Score=108.39 Aligned_cols=140 Identities=19% Similarity=0.183 Sum_probs=91.3
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceE--ee---cChHHHhhH----H-----------
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRIS--MV---NSPREVIGS----I----------- 74 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~--~~---d~~~~~~g~----a----------- 74 (315)
+| ||+.. ..+++||+++++++|+++|+||+||.+. ++ ++... +. ......... .
T Consensus 107 ~y-vP~~~-~~~~~ynkdl~~~~Gl~~p~Twde~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 184 (315)
T PF01547_consen 107 IY-VPYSG-PNGLYYNKDLFEKAGLDPPWTWDEFLEAAKKIKEKGPDPYGIAFGGSDSWDAYWFFQAFAWSFGGYWFDED 184 (315)
T ss_dssp ES-EEEEE-EEEEEEETTTHHHTTSSSTSBHHHHHHHHHHHHHTTTCECEECCTEESHHHHHHHHHHHHHHTTHEEEEEE
T ss_pred EE-EEeee-eeEEEEchhHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCceEEeccCccccchHHHHHHHHhcCceeecCC
Confidence 89 99995 9999999999999999999999999874 22 12111 11 111110000 0
Q ss_pred -------HHHHHHH---HHH------hh----------cHHHHHHHHcCCEEEEEEehhhHHH---------HH----Hc
Q 036082 75 -------AVQLNLA---LLA------NQ----------SAHHLKAFGIGDVWVAVGWSSDVLP---------AV----KH 115 (315)
Q Consensus 75 -------~~~~a~~---~L~------~~----------~~~~~~~~~~Gev~~~~~ws~~~~~---------~~----~~ 115 (315)
....++. .+. +. ..+..+.|.+|++.+.+.+++.... .. ..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (315)
T PF01547_consen 185 GKGFDDPEAVEALKYYKKLYYEKLWKKGYFPPDAVSSDWDQAQQAFASGKVAMIIDGSWYALNWMKVEPQSAFNQNSPPV 264 (315)
T ss_dssp TCESCSHHHHHHHHHHHHHHHHHHHHCHHTTTTETTSSHHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHHhhhhhhcccCCCccccCHHHHHHHHhCCCceEEEecccccccccccccccccccccccc
Confidence 0011111 111 11 2356788999999999988776211 11 12
Q ss_pred CCCeEE--EeCC--Cc--eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHH
Q 036082 116 MSNVAV--VPKS--GA--SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARAL 172 (315)
Q Consensus 116 ~~~i~~--~Pke--G~--~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~ 172 (315)
..++.+ +|.. |. ....++++|+++++|++ +|.+||+||+|+|+|.
T Consensus 265 ~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~sk~~e------------~A~~fl~~l~s~e~Q~ 315 (315)
T PF01547_consen 265 KFDWGFAPFPAGPGGGPPIGGGDGIAISKNSKNPE------------AAWKFLDFLTSPEGQK 315 (315)
T ss_dssp TTTEEEECEEBETTEETCSEEEEEEEEBTTSSTHH------------HHHHHHHHHTSHHHHH
T ss_pred ccccceeccCccCCCCCccccceEEEEECCCCCHH------------HHHHHHHHhCChhhCC
Confidence 345776 6631 11 14677899999999998 9999999999999984
No 21
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein. This model describes binding proteins functionally associated with the sulfate ABC transporter. In the model bacterium E. coli, two different members work with the same transporter; mutation analysis says each enables the uptake of both sulfate and thiosulfate. In many species, a single binding protein is found, and may be referred to in general terms as a sulfate ABC transporter sulfate-binding protein.
Probab=99.22 E-value=2.4e-10 Score=109.13 Aligned_cols=135 Identities=15% Similarity=0.205 Sum_probs=93.7
Q ss_pred eeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhh-HH--------------HHHHHHHHHHh
Q 036082 21 AAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG-SI--------------AVQLNLALLAN 85 (315)
Q Consensus 21 ~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g-~a--------------~~~~a~~~L~~ 85 (315)
++||. +..+|+|+++... .|+||+||+++++ +|++.+......+ .. +.+++++.|.+
T Consensus 98 ~~~~~-~~lvl~v~k~~~~-----~i~sw~dL~~~~~--kiai~dp~~sg~~~~~~L~~~g~~~~~~~g~~~~a~~~l~~ 169 (315)
T TIGR00971 98 SAPYT-STIVFLVRKGNPK-----QIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWGYALHHNNGDQAKAQQFVTA 169 (315)
T ss_pred CCccc-eeEEEEEeCCCCC-----CCCCHHHHhCCCc--EEEeCChhhHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 57777 6999999987652 5789999999865 5887664322111 00 01233444433
Q ss_pred h---------c--HHHHHHHHcCCEEEEEEehhhHHHHHHc--CCCeEE-EeCCCceeeeeeEEEeC----CCCCccccc
Q 036082 86 Q---------S--AHHLKAFGIGDVWVAVGWSSDVLPAVKH--MSNVAV-VPKSGASLWADLWAIPA----ASRLETKQI 147 (315)
Q Consensus 86 ~---------~--~~~~~~~~~Gev~~~~~ws~~~~~~~~~--~~~i~~-~PkeG~~~~~d~~~I~k----~s~~~~~~~ 147 (315)
. + .+....+.+|++.+++.|.+++...... +.++.+ +|++|.++... +++.+ .+++++
T Consensus 170 l~~nv~~~~~~~~~~~~~~v~~Ge~dagivy~sda~~~~~~~~~~~i~iviP~e~~~i~~~-iavv~~~~~~~~~~e--- 245 (315)
T TIGR00971 170 LLKNVEVLDSGARGATNTFVERGIGDVLIAWENEALLARKELGKDKFEIVTPSESILAEPT-VSVVDKVVEKKGTKK--- 245 (315)
T ss_pred HHhhccccCCCchHHHHHHHHcCceeEEEEEcHHHHHHHHhcCCCCeEEEECCCCcccccc-EEEEEcccCCCCCHH---
Confidence 2 1 1344557799999999999998765543 357998 99998766554 55554 345666
Q ss_pred CCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 148 GGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 148 ~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
+|++|||||+|+|+|+.+.+
T Consensus 246 ---------~A~~FidfLlS~eaq~i~ak 265 (315)
T TIGR00971 246 ---------VAEAYLKYLYSPEGQEIAAK 265 (315)
T ss_pred ---------HHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999984
No 22
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=99.17 E-value=9.4e-11 Score=112.92 Aligned_cols=155 Identities=19% Similarity=0.293 Sum_probs=101.6
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCC-CChHhhcCc--cc--CCc--e--EeecC-h--HH--HhhH-H------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPI-EDWKDLWRP--EL--AGR--I--SMVNS-P--RE--VIGS-I------ 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P-~SW~dL~dp--~~--~Gk--i--~~~d~-~--~~--~~g~-a------ 74 (315)
||++||+|+.+.+.+++||+|.|+++|+++| +||+||... ++ ++. . .+... . .. .+.. .
T Consensus 135 dG~~y~~P~~~~~~~~~ynkdlf~~aG~~~pp~tw~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 214 (433)
T COG1653 135 DGKLYGVPFNSSTPALFYNKDLFKKAGLKPPPKTWDELLAAAKKLKEKGGDVYGIAGGGGWQGEDLFFTFALFLGGAGGG 214 (433)
T ss_pred CCEEeeccccccCceEEEeHHHHHHhCCCCCCCCHHHHHHHHHHHHhhcCCccceeeccccccchhHHHHHHHhhcCCCc
Confidence 3899999999999999999999999999886 999998653 22 232 1 11111 0 00 0100 0
Q ss_pred --------------HHHHHHHHHHhh--------------cHHHHH-HHHcCCEEEEEEehhhHHHHHHcC---CCeEE-
Q 036082 75 --------------AVQLNLALLANQ--------------SAHHLK-AFGIGDVWVAVGWSSDVLPAVKHM---SNVAV- 121 (315)
Q Consensus 75 --------------~~~~a~~~L~~~--------------~~~~~~-~~~~Gev~~~~~ws~~~~~~~~~~---~~i~~- 121 (315)
...++++.+.++ ..+... .|.+|++.|.+.++.......... .++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~ 294 (433)
T COG1653 215 FLDKDGGEAFLNDPEAVEALEFLKDLYKKGLLPKGASGYGWDDAGALAFGSGKVAMTIDGTWAIGYFKKAAGPKFDIGVA 294 (433)
T ss_pred eecCCCceeccCCHHHHHHHHHHHHHHhcccccCCccccchhhhhhHHHhcCceeeEeeccchhcccccccccccceeEE
Confidence 123444444321 124556 599999999998877665555443 23676
Q ss_pred -EeCC---Cc---eeeeeeEEEeCCCCC-cccccCCCCCCCHHHHHHHHHHHhcHHHHHH-HHhhhCCCCC
Q 036082 122 -VPKS---GA---SLWADLWAIPAASRL-ETKQIGGRVRGLSPLIHQWIEFCLQTARALP-FKQEVIPGAS 183 (315)
Q Consensus 122 -~Pke---G~---~~~~d~~~I~k~s~~-~~~~~~~~~~~~~~~A~~FInfllspe~q~~-~~~e~~~~~~ 183 (315)
+|.. |. .+...+++|++.+++ ++ +|++||+|+++||.|.. +.. ..++.+
T Consensus 295 ~~P~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------aA~~f~~~l~s~e~q~~~~~~-~~g~~P 352 (433)
T COG1653 295 PLPAGPGGGGAAGGVGGGGLGVSKKSKKHKE------------AAWKFLEFLTSPEAQAELLAK-VTGGLP 352 (433)
T ss_pred eCCCCCCCCCcceeeccceEEeecCCccchH------------HHHHHHHHhcCCchhhhhhhc-cCCCcC
Confidence 6642 22 334457899999998 44 99999999999999986 653 345433
No 23
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=99.15 E-value=1.4e-10 Score=109.87 Aligned_cols=163 Identities=15% Similarity=0.177 Sum_probs=119.4
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcC--cccCCceEeecChHH----Hh------hHH------------
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--PELAGRISMVNSPRE----VI------GSI------------ 74 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d--p~~~Gki~~~d~~~~----~~------g~a------------ 74 (315)
.+.+||+.+.++|+|+.++.+. +|+|.+||+. .+..+|++...++.. .| .+.
T Consensus 142 Gl~~~~~~~q~~f~yd~~k~~~----~P~s~eeLL~wA~aNP~rf~Y~~P~~gg~G~~Fl~~~~i~Lt~d~~~l~~avDp 217 (384)
T COG4134 142 GLESPWGGNQLVFIYDRDKVPQ----VPQSFEELLVWAKANPKRFGYPRPPNGGTGTAFLKQLLIMLTGDAAALQQAVDP 217 (384)
T ss_pred cccccccCCcceEEEccccCCC----CCcCHHHHHHHHHhCcCccccCCCCCCCccHhHHHHHHHHhcCchHhhcCCCCh
Confidence 3789999999999999888876 8999999964 456778777654331 11 110
Q ss_pred -----HHHHHHHHHHhh----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcC---CCeEE-EeCCCceeeeeeEE
Q 036082 75 -----AVQLNLALLANQ----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHM---SNVAV-VPKSGASLWADLWA 135 (315)
Q Consensus 75 -----~~~~a~~~L~~~----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~---~~i~~-~PkeG~~~~~d~~~ 135 (315)
..++.+++|.++ +.++.+.+.+|+..|+++|.+.....+..+ +...+ .++.|.+...+.++
T Consensus 218 at~~k~~~p~WqYl~~L~~~i~r~~kg~Adml~lL~dG~l~l~~t~~~~~~s~~~tG~lp~s~~~~~~~~G~vgn~~f~a 297 (384)
T COG4134 218 ATFAKVWAPLWQYLDELHPYIWRTGKGPADMLQLLNDGTLYLTLTFPDHASSAIATGDLPASARSFALEKGMVGNGHFMA 297 (384)
T ss_pred HHHHhhccHHHHHHHHhhhhhhhcCCCHHHHHHHhcCCcEEEeecchhhhhcchhccCCchHhhhhhhccccccCcceEE
Confidence 124455666554 457889999999999999977776666554 23455 78889988899999
Q ss_pred EeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhc
Q 036082 136 IPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLK 200 (315)
Q Consensus 136 I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~ 200 (315)
||+++++++ .|..||||++|||.|..-.+..+. ..|++. ...++|+..++
T Consensus 298 IPaNa~~~A------------~alvl~n~lls~EaQlrk~d~~v~-~~P~~l--~pq~lpda~qe 347 (384)
T COG4134 298 IPANANAKA------------AALVLANFLLSPEAQLRKLDPAVW-GDPSVL--DPQLLPDAQQE 347 (384)
T ss_pred ecCCCCCch------------HHHHHHHHhcCHHHHHhhhccccc-CCcccc--CcccChhhHhh
Confidence 999999998 999999999999999554444444 466543 33466665554
No 24
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=99.13 E-value=1.1e-09 Score=105.70 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=94.2
Q ss_pred eeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhh----HHH---H--------HHHHHHHHh
Q 036082 21 AAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG----SIA---V--------QLNLALLAN 85 (315)
Q Consensus 21 ~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g----~a~---~--------~~a~~~L~~ 85 (315)
++|| .++.+|+||++.-+ .|+||+||++|.+ +|.+.|+.....+ ++. . .++++.+.+
T Consensus 115 ~~p~-~s~lV~vv~kgnpk-----~i~sw~DL~~~~~--kI~i~nP~tSg~g~~~~La~~~~~~~~~G~d~~~a~~~l~~ 186 (338)
T PRK10852 115 SSPF-YSTMAFLVRKGNPK-----NIHDWNDLVRSDV--KLIFPNPKTSGNARYTYLAAWGAADKADGGDKAKTEQFMTQ 186 (338)
T ss_pred CCcc-cceEEEEEECCCCC-----CCCCHHHhcCCCc--EEEECCCCcchHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 6787 78899999988653 5899999999875 6888874322222 110 1 113444443
Q ss_pred h-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHc--CCCeEE-EeCCCceeeeeeEEEe-CC---CCCccccc
Q 036082 86 Q-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKH--MSNVAV-VPKSGASLWADLWAIP-AA---SRLETKQI 147 (315)
Q Consensus 86 ~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~--~~~i~~-~PkeG~~~~~d~~~I~-k~---s~~~~~~~ 147 (315)
. .......+.+|++++++.|.+++...... ..++.+ +|++|.++.. .++|. ++ ++|++
T Consensus 187 l~~Nv~v~~~~~~~a~~~~v~~Ge~Dvgi~yesda~~~~~~~~~~~~~iV~P~~~~~~~~-pvAvv~k~~~~~~~~e--- 262 (338)
T PRK10852 187 FLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYEAQGYEVVVPKTNILAEF-PVAWVDKNVQANGTEK--- 262 (338)
T ss_pred HHhcCCEecCCCcHHHHHHHHcCCccEEEEechHHHHHHHhcCCCCeEEEeCCCCceeee-eEEEEEeccccCCCHH---
Confidence 3 12344556889999999999887665443 356788 9988876554 56655 54 45566
Q ss_pred CCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 148 GGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 148 ~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
+|.+|||||+|+|+|..+++
T Consensus 263 ---------~AkaFidfL~S~eaQ~i~ak 282 (338)
T PRK10852 263 ---------AAKAYLNYLYSPQAQTIITD 282 (338)
T ss_pred ---------HHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999985
No 25
>PRK10752 sulfate transporter subunit; Provisional
Probab=99.07 E-value=3e-09 Score=102.37 Aligned_cols=132 Identities=12% Similarity=0.156 Sum_probs=89.9
Q ss_pred eceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhh---H-H-----------HHHHHHHHHHhh----
Q 036082 26 WGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG---S-I-----------AVQLNLALLANQ---- 86 (315)
Q Consensus 26 ~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g---~-a-----------~~~~a~~~L~~~---- 86 (315)
.+..+|++++..-+ .|++|+||++|.+ +|.+.+...+.-+ + + +.+++++.+.++
T Consensus 113 ~~~lviiv~~gnp~-----~i~~w~DL~~~~~--~I~i~dP~tSGta~~~~laa~~~~l~~~~g~~~~a~~~l~kL~~Nv 185 (329)
T PRK10752 113 TSTIVFLVRKGNPK-----QIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVKALYKNV 185 (329)
T ss_pred ceeEEEEEECCCCC-----CCCCHHHhcCCCc--EEEECCCCcchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcC
Confidence 45677888887543 5789999999875 7888774332111 1 1 123566665554
Q ss_pred -----c-H-HHHHHHHcCCEEEEEEehhhHHHHHHc--CCCeEE-EeCCCceeeeeeEEE---eCCCCCcccccCCCCCC
Q 036082 87 -----S-A-HHLKAFGIGDVWVAVGWSSDVLPAVKH--MSNVAV-VPKSGASLWADLWAI---PAASRLETKQIGGRVRG 153 (315)
Q Consensus 87 -----~-~-~~~~~~~~Gev~~~~~ws~~~~~~~~~--~~~i~~-~PkeG~~~~~d~~~I---~k~s~~~~~~~~~~~~~ 153 (315)
+ . .....+.+|+.+++++|.........+ +.+|++ +|++|..+......| .++++|++
T Consensus 186 ~~~~~~~~~a~~~~v~~g~gdv~I~~e~~a~~~~~~~~g~~veiV~P~~g~~~~~~va~v~~~~k~~~~~e--------- 256 (329)
T PRK10752 186 EVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPTVSVVDKVVDKKGTRE--------- 256 (329)
T ss_pred CcccCCCcchhhHHHHcCeeeEEEEechHHHHHHHHhCCCCEEEEECCCCccccceeEEEEeccccCCCHH---------
Confidence 1 1 123335679999999999887765544 678999 999885443332222 46778887
Q ss_pred CHHHHHHHHHHHhcHHHHHHHHh
Q 036082 154 LSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 154 ~~~~A~~FInfllspe~q~~~~~ 176 (315)
+|++||||++|+|+|..+++
T Consensus 257 ---~Ak~FidfllS~eaQ~i~a~ 276 (329)
T PRK10752 257 ---VAEAYLKYLYSPEGQEIAAK 276 (329)
T ss_pred ---HHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999974
No 26
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]
Probab=99.06 E-value=4.8e-10 Score=110.64 Aligned_cols=147 Identities=16% Similarity=0.204 Sum_probs=98.4
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--ccC----Cce-EeecChHHH---hhHH-------
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA----GRI-SMVNSPREV---IGSI------- 74 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~----Gki-~~~d~~~~~---~g~a------- 74 (315)
.|| |++||+|...-+..|+|||+++++ +|+||+||..- +.+ |+. .+.-+.... +++.
T Consensus 136 ~y~--GkiYGlP~~~Et~~L~YNKdlv~~----~P~T~~el~~~ak~~~~~~~g~~~~~~~~~~~~Y~~y~~~~~~Ggyv 209 (420)
T COG2182 136 TYK--GKLYGLPQAVETLALYYNKDLVPE----PPKTWEELEALAKEAKDKGWGKSHGFLADLTNFYYSYGLIAGYGGYV 209 (420)
T ss_pred hcC--CEEEeccHhhhhhhhheeccccCC----CcccHHHHHHHHHHhhhccCCceeeeecchhhhHhhhhhhccCCcEE
Confidence 577 999999999999999999999997 89999999752 232 444 221111111 1110
Q ss_pred -----------H-------HHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--Ee
Q 036082 75 -----------A-------VQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VP 123 (315)
Q Consensus 75 -----------~-------~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~P 123 (315)
+ ..+++..+... ..-...+|..|+.++.+.+-..+......+.++++ +|
T Consensus 210 F~~~~g~~~~~d~gl~n~G~i~g~~~~~~~~~~g~~~~~~~~~~~~slF~~G~aa~~i~GPW~~~~~~~~g~n~GvaplP 289 (420)
T COG2182 210 FGKENGKYDPKDIGLANAGAIEGANFLKSWYKKGLIPEDVAGDFAQSLFTEGKAAAIINGPWSISAYKDAGINYGVAPLP 289 (420)
T ss_pred ecCCCCccchhhccCccccchHHHHHHHHHHHcCCCCcccccHHHHHHHhcCCceEEecCCCccchhhhcCcccceeecC
Confidence 0 01222233221 12356889999988777654444444455666666 66
Q ss_pred CC--C----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 124 KS--G----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 124 ke--G----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
+- | ..+.+-+++|+..|+|++ +|.+||.|++.++.+..+..
T Consensus 290 ~~~~g~~~~pf~Gv~~~~Vsa~skn~~------------~A~~f~~~~t~~~~~~~~~~ 336 (420)
T COG2182 290 TLNNGKKPKPFSGVKGYVVSAASKNKE------------AAAKFVKYFTNPKNQKLLYD 336 (420)
T ss_pred CCCCCCCcCCcccceEEEecCCCCcHH------------HHHHHHHHhhhHHHHHHHHH
Confidence 42 2 123456899999999998 99999999999999998774
No 27
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A ....
Probab=98.99 E-value=1.1e-08 Score=92.24 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=99.9
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH---HHHH-----HHHHHHhh-----
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI---AVQL-----NLALLANQ----- 86 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a---~~~~-----a~~~L~~~----- 86 (315)
...|+..+..+|+|+++.- ..+.+|+||.++++ +|.+.|+..+..|.. -+.. .++.|.+.
T Consensus 72 ~~~~~~~~~~vl~~~~~~~-----~~~~~~~dL~~~~~--~i~~~dP~~s~~g~~~~~~l~~~g~~~~~~~l~~~~~~~~ 144 (230)
T PF13531_consen 72 SPAPLARSPLVLAVPKGNP-----KGIRSWADLAQPGL--RIAIPDPSTSPSGLAALQVLAAAGGQELLDALQKNIVQYV 144 (230)
T ss_dssp GEEEEEEEEEEEEEETTST-----TSTTCHHHHCSTT----EEEE-TTTTHHHHHHHHHHHHHTHCHHHHHHHHTEEEEE
T ss_pred cccccccCceEEEeccCcc-----cccCCHHHHhhccC--EEEecCcccChhhHHHHHHHHHcccHHHHHHHHHhCcccc
Confidence 4678999999999999982 26889999999877 899988654433332 1111 23334332
Q ss_pred --cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCcee--eeeeEEEeCCCCCcccccCCCCCCCHHHHHHH
Q 036082 87 --SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASL--WADLWAIPAASRLETKQIGGRVRGLSPLIHQW 161 (315)
Q Consensus 87 --~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~--~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~F 161 (315)
..+..+.+.+|++++++.|...+... ....++.+ .|.++... ....++|.++++|++ +|.+|
T Consensus 145 ~~~~~~~~~v~~g~~d~~~~~~s~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~------------~a~~f 211 (230)
T PF13531_consen 145 PSTSQVLSAVASGEADAGIVYESQAIFA-RQGDPLSYVYPPDGVNSPPIDYPIAILKNAPHPE------------AARAF 211 (230)
T ss_dssp SSHHHHHHHHHTTSSSEEEEEHHHHHHC-TSHTTEEEEE-STTTSSSEEEEEEEEBTTCTTHH------------HHHHH
T ss_pred cchHHHHHHHHcCCCcceeeHHHHHHHh-hcCCCeEEEECCchhcCCCEEEEEEEecCCCCHH------------HHHHH
Confidence 34677889999999999998877433 34567888 66666664 345789999999998 99999
Q ss_pred HHHHhcHHHHHHHHh
Q 036082 162 IEFCLQTARALPFKQ 176 (315)
Q Consensus 162 Infllspe~q~~~~~ 176 (315)
++||+|+++|..+.+
T Consensus 212 ~~~L~s~~~q~~l~~ 226 (230)
T PF13531_consen 212 IDFLLSPEGQQILAK 226 (230)
T ss_dssp HHHHTSHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHH
Confidence 999999999999874
No 28
>PRK03537 molybdate ABC transporter periplasmic molybdate-binding protein; Provisional
Probab=98.90 E-value=3.2e-08 Score=87.64 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=94.6
Q ss_pred eeeeeceEEEEEecccccccCCCCCCChHh-hcCcccCCceEeecChHHHhhHH---HHHH-------HHHHHHhh----
Q 036082 22 APYRWGTVVIAYKKSKFRKHNLAPIEDWKD-LWRPELAGRISMVNSPREVIGSI---AVQL-------NLALLANQ---- 86 (315)
Q Consensus 22 vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~d-L~dp~~~Gki~~~d~~~~~~g~a---~~~~-------a~~~L~~~---- 86 (315)
.+|..+..+|+|+++.- ..+++|.| |.++.+ +|++.+....-+|.. .+.. .++.+.+.
T Consensus 17 ~~~a~n~lvl~~~~~~~-----~~~~~~~d~L~~~~~--~iai~~P~~~P~G~~a~~~l~~~~~~~~~~~~~l~~~~~~~ 89 (188)
T PRK03537 17 VPFARNRLCAIARADVM-----LTSDNLLDLLLDPDI--RLGTSTPGADPSGDYAWQLFDRAEALHAGAGEALRTKALQL 89 (188)
T ss_pred eeeeeceEEEEEcCCCC-----CCccCHHHHhcCCCc--EEEcCCCCCCcchHHHHHHHHHHHhhccCcchHHHHHHHHH
Confidence 57888999999998653 15678988 667765 688876543333332 1111 12222221
Q ss_pred ----c-------HHHHH-HHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCCCceeeeeeEEEeCCCCCcccccCCCCC
Q 036082 87 ----S-------AHHLK-AFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKSGASLWADLWAIPAASRLETKQIGGRVR 152 (315)
Q Consensus 87 ----~-------~~~~~-~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~ 152 (315)
+ .+... .+.+|++++++.|..++........++.+ +|.+........++|.++++ +
T Consensus 90 v~~~~~~~~~~~~~~~~~~v~~G~adag~vy~s~~~~~~~~~~~~~~i~iP~~~~~~i~y~iav~k~~~--~-------- 159 (188)
T PRK03537 90 VGGPNSAPIPAGRNAAEWLIENKQADIFIGYASNAPLAQREVPSLQVVDLPEPLAVGAEYGLAILKDAS--P-------- 159 (188)
T ss_pred hCCCCCCcCCCcchHHHHHHHCCCCCEEEEEecHHHHHhccCCCCeEEeCCCCcceeeeeeEEEecCCh--H--------
Confidence 1 12334 67899999999998887654333345664 89887766666889998764 5
Q ss_pred CCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCC
Q 036082 153 GLSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (315)
Q Consensus 153 ~~~~~A~~FInfllspe~q~~~~~e~~~~~~P 184 (315)
+|++|++||+|+|+|..|.+ .||..|
T Consensus 160 ----~A~~F~~fl~s~eaq~i~~~--~Gf~~~ 185 (188)
T PRK03537 160 ----QAKRLADFLLSPKGQAILAQ--YGFSPP 185 (188)
T ss_pred ----HHHHHHHHHhCHHHHHHHHH--cCCCCC
Confidence 89999999999999999984 466443
No 29
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=98.87 E-value=2.1e-08 Score=93.17 Aligned_cols=136 Identities=16% Similarity=0.202 Sum_probs=92.9
Q ss_pred eeeeceEEEEEeccc-ccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH---HHHH--HHHHHHhh------cHHH
Q 036082 23 PYRWGTVVIAYKKSK-FRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI---AVQL--NLALLANQ------SAHH 90 (315)
Q Consensus 23 P~~~g~~gi~YN~d~-~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a---~~~~--a~~~L~~~------~~~~ 90 (315)
++..+..+|+|+++. .....+.+|++|+||.++ ++|++.|+.....|.. .+++ .++.+.+. ..+.
T Consensus 103 ~~a~n~lvl~~~~~~~~~~i~~~~~~~~~dLl~~---~~iai~dP~~~p~G~~a~~~l~~~g~~~~l~~k~~~~~~v~~~ 179 (257)
T PRK10677 103 TLLGNSLVVVAPKASEQKDFTIDKKTDWKSLLNG---GRLAVGDPDHVPAGIYAKEALQKLGAWDTLSPKLARAEDVRGA 179 (257)
T ss_pred eeecCEEEEEEECCCccccccccCccCHHHhcCC---CeEEEcCCCCChHHHHHHHHHHHcCCHHHHHhhhcccccHHHH
Confidence 577788899999974 222223467899999863 6899987543334432 1111 12222221 2346
Q ss_pred HHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHH
Q 036082 91 LKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTA 169 (315)
Q Consensus 91 ~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe 169 (315)
.+.+.+|++++++.|..+... ..+.++.. +|+++...-...++|.++++| + +|++||+|++|+|
T Consensus 180 ~~~v~~G~ad~gi~~~s~a~~--~~~~~~~~~~P~e~~~~i~~~~avlk~~~~-~------------~Ak~Fi~fl~S~e 244 (257)
T PRK10677 180 LALVERNEAPLGIVYGSDAVA--SKKVKVVGTFPEDSHKPVEYPMAIVKGHNN-A------------TVKAFYDYLKGPQ 244 (257)
T ss_pred HHHHHcCCCCEEEEEeeeeec--cCCCeEEEECCcccCCcceeeEEEEcCCCC-H------------HHHHHHHHHcCHH
Confidence 678899999999999776532 23344444 798886655668899999876 4 7999999999999
Q ss_pred HHHHHHh
Q 036082 170 RALPFKQ 176 (315)
Q Consensus 170 ~q~~~~~ 176 (315)
+|..+.+
T Consensus 245 aq~i~~~ 251 (257)
T PRK10677 245 AAAIFKR 251 (257)
T ss_pred HHHHHHH
Confidence 9998863
No 30
>PRK04168 molybdate ABC transporter periplasmic substrate-binding protein; Provisional
Probab=98.27 E-value=9.4e-06 Score=78.36 Aligned_cols=155 Identities=14% Similarity=0.221 Sum_probs=96.1
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhc-CcccCCceEeecChHHHhhHHH---HH---------HHHHHHHhh
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLW-RPELAGRISMVNSPREVIGSIA---VQ---------LNLALLANQ 86 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~-dp~~~Gki~~~d~~~~~~g~a~---~~---------~a~~~L~~~ 86 (315)
..++|..+..+|+|+++.--... -.+.+|.+++ ++. .+|++.|...+-.|... ++ ..++.+...
T Consensus 105 ~~~~fa~n~lVl~~~~~~~~~~~-~~~~~~~~lL~~~~--~~Iai~~P~~~P~G~~a~~~l~~a~~~l~~~gl~~~l~~~ 181 (334)
T PRK04168 105 WYVRFATNEIVLAYTDKSKYADE-INSDNWYEILQRPD--VKFGFSDPNDDPCGYRSLMVLQLAELYYNDPTIYDKLIAK 181 (334)
T ss_pred eeEEEEcccEEEEEcCCChhhhh-cccccHHHHhcCCC--cEEEcCCCCCCCchHHHHHHHHHHHHHhCCchHHHHHHhh
Confidence 34688889999999876321001 1356798865 554 37888775433344220 01 111222110
Q ss_pred -----------------------------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCC----------
Q 036082 87 -----------------------------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKS---------- 125 (315)
Q Consensus 87 -----------------------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pke---------- 125 (315)
..+....+.+|++++++.|.+++... .+.| +|.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~G~aDagivy~S~a~~~-----~~~~i~lP~~~n~~~~~~~~ 256 (334)
T PRK04168 182 NTNIKVNENLIISPKEIEVNTDKVFVRPKEVELLSLLETGNMDYAFIYKSVAVQH-----NLKYIELPDEINLGNYKYAD 256 (334)
T ss_pred ccccccccccccCcccccccccceeecccchhhHHHHhcCCccEEEEEeeehhhC-----CCCeeECchhhcCCChhhhh
Confidence 12567788999999999998876531 2232 4432
Q ss_pred ----------------CceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCC--CCch
Q 036082 126 ----------------GASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGAS--PSAL 187 (315)
Q Consensus 126 ----------------G~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~--P~~~ 187 (315)
...-....++|+++++|++ +|++|++|++|+|.|..+.+ .|+.+ |.+.
T Consensus 257 ~y~~~~~~~~~~~~~~~~~pi~y~~ai~~~s~n~e------------~A~~Fi~fl~S~e~q~il~~--~Gf~~~~P~~~ 322 (334)
T PRK04168 257 FYKKVSVTVTGTGKTITAKPIVYGITVPKNAPNRE------------AAIEFLKYLLSEPGGEVLEN--NGQPPIVPAIA 322 (334)
T ss_pred hhhEEEEEecCCCccccCceeeeeeeeecCCCCHH------------HHHHHHHHHcCHHHHHHHHH--cCCCCCCCccc
Confidence 1111345789999999998 99999999999999999974 35544 4432
Q ss_pred hhhccCCChhhh
Q 036082 188 ESTLVKLPGELL 199 (315)
Q Consensus 188 ~~a~~~l~~e~~ 199 (315)
...+|++++
T Consensus 323 ---~~~~p~~l~ 331 (334)
T PRK04168 323 ---FGNVPEELK 331 (334)
T ss_pred ---cCCCCHHHh
Confidence 235666654
No 31
>PF02030 Lipoprotein_8: Hypothetical lipoprotein (MG045 family)
Probab=98.06 E-value=1.2e-05 Score=80.43 Aligned_cols=134 Identities=21% Similarity=0.298 Sum_probs=92.2
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhcCc------cc-CCceEeecChHHHhhHHHH----------------
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP------EL-AGRISMVNSPREVIGSIAV---------------- 76 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp------~~-~Gki~~~d~~~~~~g~a~~---------------- 76 (315)
|+|||.|+-.+|+||...++... ..--+|.+++.. .+ ..|+++.|+.+.++.++.+
T Consensus 142 Y~IPYF~QDLvfaY~~eki~~L~-~~~v~w~~l~k~i~~~~~rfn~~Kl~~IDd~rti~sI~k~~~~~~~nd~~~v~~~~ 220 (493)
T PF02030_consen 142 YGIPYFWQDLVFAYNGEKIKNLK-NEDVSWSDLIKEINNHKDRFNNNKLAIIDDARTIYSISKLIKTENNNDPKNVNPKG 220 (493)
T ss_pred hcccceeeeeEEEEcccccchhh-hcCCcHHHHHHHHhhCcccccccceEEeccHHHHHHHHHHHhhccCCCcccccccc
Confidence 99999999999999999887532 134589998753 12 3478999999988776511
Q ss_pred ----------------HHHHHHHHhh-----cHHHHHHHHcCCEEEEEEehhhHHHHHHcCC--------------CeEE
Q 036082 77 ----------------QLNLALLANQ-----SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMS--------------NVAV 121 (315)
Q Consensus 77 ----------------~~a~~~L~~~-----~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~--------------~i~~ 121 (315)
..+..-+..+ +..+++.|++|+.+.|++|+||++.+...+. ++..
T Consensus 221 ~q~~~~~~~~~~~s~i~~~~~~l~~lf~N~dS~~lln~la~~~~~~aimYNGDalyA~~gGd~~~E~~~~~~~~~~nf~~ 300 (493)
T PF02030_consen 221 SQTNYFKNNYESVSYIGLVRNNLSTLFLNSDSNDLLNNLANGQFDGAIMYNGDALYAANGGDYFEEKDENKLPDSNNFHI 300 (493)
T ss_pred ccccccccchhhhhhhhhhhcchhhhhcCCChHHHHHHHhccccceEEEEccHHHHHhcCCCcccccccccCCCCCceee
Confidence 0000001111 5678899999999999999999988754321 2223
Q ss_pred -EeCCCceeeeeeEEEeCCC-CCcccccCCCCCCCHHHHHHHHHHHhc
Q 036082 122 -VPKSGASLWADLWAIPAAS-RLETKQIGGRVRGLSPLIHQWIEFCLQ 167 (315)
Q Consensus 122 -~PkeG~~~~~d~~~I~k~s-~~~~~~~~~~~~~~~~~A~~FInflls 167 (315)
-|+ -++...|.++|.|-+ ++.+ +|+.||++++-
T Consensus 301 vr~~-~tl~~LD~iVinK~~~e~ed------------~AYe~I~~l~~ 335 (493)
T PF02030_consen 301 VRPK-NTLSLLDFIVINKISSENED------------KAYEFINKLAF 335 (493)
T ss_pred eccC-CCceehhhhhhcccCHHHHH------------HHHHHHHHHHH
Confidence 332 245667877778744 4444 99999999875
No 32
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=97.87 E-value=0.00025 Score=66.19 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=91.8
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHH---HHhh---------c
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLAL---LANQ---------S 87 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~---L~~~---------~ 87 (315)
.-+++..+..+|++.++--. .+.+|.++.++.. +++++.|+...-.|... .+.++. +.+. -
T Consensus 103 ~~~~fa~n~lvl~~~~~~~~-----~~~~~~~l~~~~~-~~lai~~p~~~P~G~ya-~~~l~~~g~~~~~~~k~v~~~~v 175 (258)
T COG0725 103 SRIVFAGNRLVLAVPKGSKK-----KIESLEDLLERPD-VRLAIGDPKTVPAGKYA-KEALELLGLWYTLKDKLVLATNV 175 (258)
T ss_pred ceEEeeCCeEEEEEeCCCcc-----CcccHHHHhcCcC-cEEEecCCCCCCchHHH-HHHHHHhchhhhccccEEecCcH
Confidence 35788888999999775432 3455999987533 57887775443333321 112221 1111 2
Q ss_pred HHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHh
Q 036082 88 AHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCL 166 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfll 166 (315)
.+....+.+|+++.++.|-+++.... ...+-. +|.+...--...++|+++++|++ +|.+|++|+.
T Consensus 176 ~~~l~~V~~G~ad~g~vy~sd~~~~~--~~~~~~~~~~~~~~Pi~y~iav~~~~~~~~------------~A~~f~~fl~ 241 (258)
T COG0725 176 RQALAYVETGEADAGFVYVSDALLSK--KVKIVGVFPEDLHSPIVYPIAVLKNAKNPE------------LAKEFVDFLL 241 (258)
T ss_pred HHHHHHHHcCCCCeEEEEEEhhhccC--CceEEEEcccccCCCeEEEEEEEcCCCCHH------------HHHHHHHHHh
Confidence 36677889999999999988655433 222223 77655443456899999999988 9999999999
Q ss_pred cHHHHHHHHh
Q 036082 167 QTARALPFKQ 176 (315)
Q Consensus 167 spe~q~~~~~ 176 (315)
|++.+..+.+
T Consensus 242 s~~a~~il~~ 251 (258)
T COG0725 242 SPEAQEILEK 251 (258)
T ss_pred CHHHHHHHHH
Confidence 9999999974
No 33
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=0.00087 Score=63.35 Aligned_cols=145 Identities=17% Similarity=0.256 Sum_probs=84.3
Q ss_pred eeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecCh-----HH----HhhHH------HHHHHHHHHH-
Q 036082 21 AAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSP-----RE----VIGSI------AVQLNLALLA- 84 (315)
Q Consensus 21 ~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~-----~~----~~g~a------~~~~a~~~L~- 84 (315)
++||+ ++++|+.++.-=+ .+.+|+||..|.. +|..+++- +- .++.+ +-.++.+...
T Consensus 126 s~Pyt-StivFlVRkGNPK-----~I~DW~DL~k~gV--~VItpNPKTSGgARWN~Laawa~a~~~~~gdeaka~~fV~~ 197 (348)
T COG1613 126 SAPYT-STIVFLVRKGNPK-----QIRDWDDLVKPGV--QVITPNPKTSGGARWNYLAAWAYALKTNGGDEAKAKDFVGK 197 (348)
T ss_pred CCCcc-ceEEEEEecCCcc-----ccCchHHhccCCc--EEEcCCCCCCcchhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 57875 5777887776432 5789999987643 23333321 11 12222 1123333322
Q ss_pred --hh-------cHHHHHHHH-cCCEEEEEEehhhHHHHHH--cCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCC
Q 036082 85 --NQ-------SAHHLKAFG-IGDVWVAVGWSSDVLPAVK--HMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRV 151 (315)
Q Consensus 85 --~~-------~~~~~~~~~-~Gev~~~~~ws~~~~~~~~--~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~ 151 (315)
++ ......-|. +|-.++-++|.+.+..+.+ .+.++++ +|.-- ..--..+++.-..-++
T Consensus 198 L~~nvpvld~gaRgAT~tF~qrgiGDVLi~wENEA~la~~e~g~~~feiV~Ps~s-i~aEpPVAVVd~~vdk-------- 268 (348)
T COG1613 198 LYKNVPVLDTGARGATTTFVQRGIGDVLIAWENEALLALNELGGDKFEIVTPSVS-ILAEPPVAVVDKNVDK-------- 268 (348)
T ss_pred HHhcCccccCCcchhhHHHHhcCcccEEEEechHHHHHHHHhCCCCccEECCcee-eeecCCeEEEeeeccc--------
Confidence 22 223445564 4888888999998877633 3456777 77421 1111123333332232
Q ss_pred CCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCC
Q 036082 152 RGLSPLIHQWIEFCLQTARALPFKQEVIPGASPS 185 (315)
Q Consensus 152 ~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~ 185 (315)
||+.+.|..|++|+.||+.|..+++. + .-|.
T Consensus 269 kgtr~vAeAyl~yLys~~gQ~i~Ak~--~-yRP~ 299 (348)
T COG1613 269 KGTRKVAEAYLKYLYSPEGQEIAAKH--Y-YRPR 299 (348)
T ss_pred cccHHHHHHHHHHhcChHHHHHHHHh--C-CCCC
Confidence 36777999999999999999999963 3 3554
No 34
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA. Members of this protein family are tungstate (and, more weakly, molybdate) binding proteins of tungstate(/molybdate) ABC transporters, as first characterized in Pyrococcus furiosus. Model seed members and cutoffs, pending experimental evidence for more distant homologs, were chosen such that this model identifies select archaeal proteins, excluding weaker archaeal and all bacterial homologs. Note that this family is homologous to molybdate transporters, and that at least one other family of tungstate transporter binding protein, TupA, also exists.
Probab=96.42 E-value=0.014 Score=55.01 Aligned_cols=127 Identities=16% Similarity=0.274 Sum_probs=74.3
Q ss_pred eeeeeceEEEEEeccc-ccccCCCCCCCh-HhhcCcccCCceEeecChHHHhhHH-----HH-HHH------HHHHH---
Q 036082 22 APYRWGTVVIAYKKSK-FRKHNLAPIEDW-KDLWRPELAGRISMVNSPREVIGSI-----AV-QLN------LALLA--- 84 (315)
Q Consensus 22 vP~~~g~~gi~YN~d~-~~~~Gl~~P~SW-~dL~dp~~~Gki~~~d~~~~~~g~a-----~~-~~a------~~~L~--- 84 (315)
+++..+..+|+|+++. +.. .+ .+.+| ++|.++. .+|++.+....-.|.. .+ ++. ++.+.
T Consensus 76 ~~~a~n~LVL~~~~~~~~~~-~~-~~~~~~~~L~~~~--~rIai~dP~~~P~G~~a~~~~~~A~~~l~~~gl~~~l~~~~ 151 (273)
T TIGR03730 76 IMFATNEIVLAYTDKSKYAD-EI-NSDNWYEILQRPD--VRWGFSDPNDDPCGYRSLMVIQLAELYYNDPTIFDNLLLKN 151 (273)
T ss_pred eeEEcccEEEEEeCCCCccc-cc-CcchHHHHhcCCC--cEEEEcCCCCCCchHHHHHHHHHHHHHhcCCCHHHHHhhhc
Confidence 6788889999997643 211 01 23578 4455554 4788877544445521 00 111 22222
Q ss_pred ------------------------hh------cHHHHHHHHcCCEEEEEEehhhHHHHH------------------HcC
Q 036082 85 ------------------------NQ------SAHHLKAFGIGDVWVAVGWSSDVLPAV------------------KHM 116 (315)
Q Consensus 85 ------------------------~~------~~~~~~~~~~Gev~~~~~ws~~~~~~~------------------~~~ 116 (315)
.. -.+....+.+|++++++.|.+++.... +..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~~~~~v~sG~aD~g~vY~S~A~~~~~~~~~lP~~~n~~~~~~~~~y 231 (273)
T TIGR03730 152 TNITVEENNGTYLIHVPKEIDVNRSKIFIRPKEVELLSLLESGEIDYAFIYKSVAVQHGLKYIELPDEINLGDYSYADFY 231 (273)
T ss_pred ccccccccCCcccccCcccccccccceeecCchHhHHHHHHCCCCcEEEEEeeecccCCCceEECChhccCCChhhhccc
Confidence 11 235667889999999999987654320 000
Q ss_pred CCeEE-E--e---CCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHH
Q 036082 117 SNVAV-V--P---KSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFC 165 (315)
Q Consensus 117 ~~i~~-~--P---keG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfl 165 (315)
..+.+ . | ..|.++ ...++|+++++|++ +|.+|++||
T Consensus 232 ~~v~~~~~~~~~~~~~~pi-~y~~ai~~~~~~~~------------~a~~F~~fl 273 (273)
T TIGR03730 232 KKVSVELGGGKKTITGKPI-VYGITVPKNAPNRE------------EAIEFLKFL 273 (273)
T ss_pred ceEEEEecCCCceEecCCE-EEEEeccCCCCCHH------------HHHHHHhhC
Confidence 12222 1 2 112232 35789999999998 999999995
No 35
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=94.62 E-value=0.65 Score=42.05 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=71.7
Q ss_pred CCCChHhhcCcccCCceEeecChH-------HHhh-HH---HHHHHHHHHHhh-------cHHHHHHHHc-CCEEEEEEe
Q 036082 45 PIEDWKDLWRPELAGRISMVNSPR-------EVIG-SI---AVQLNLALLANQ-------SAHHLKAFGI-GDVWVAVGW 105 (315)
Q Consensus 45 ~P~SW~dL~dp~~~Gki~~~d~~~-------~~~g-~a---~~~~a~~~L~~~-------~~~~~~~~~~-Gev~~~~~w 105 (315)
-+++.+||+.|.. +|.+.+... .++. ++ .-.+.+..|++. |......|.+ -++++-++|
T Consensus 114 nIk~~eDll~~gi--~ivV~dGaG~sntsgtgvwED~agr~~~ie~v~afR~NI~~fapnSgaArkaf~~~~~aDawItW 191 (252)
T COG4588 114 NIKGFEDLLKPGI--GIVVNDGAGVSNTSGTGVWEDIAGRKGNIETVAAFRKNIVAFAPNSGAARKAFENQPDADAWITW 191 (252)
T ss_pred ccccHHHHhcCCc--eEEEeCCCcccCCCCceehHhhhcccccHHHHHHHHhceEEEccCCchHHHHHhcCCCCceEEEe
Confidence 4688999997644 344433211 1111 11 112334444443 5677888887 678888888
Q ss_pred hhhHHHHHHcCCCeEE-EeCC-CceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 106 SSDVLPAVKHMSNVAV-VPKS-GASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 106 s~~~~~~~~~~~~i~~-~Pke-G~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
..-. ..+|+++- ++.+ ...+|-+.-++++.-+++ .|.+|++||.|.|.|..|.+
T Consensus 192 ~dWa----~snpdig~~v~~~~d~vIyRd~nv~~~~~a~~-------------ea~~F~dyl~S~EAq~ifkk 247 (252)
T COG4588 192 ADWA----KSNPDIGDAVEIEKDYVIYRDFNVALAKDANK-------------EARDFADYLQSDEAQKIFKK 247 (252)
T ss_pred cchh----hhCCchhceeecccceEEeeecceeecCCCCH-------------HHHHHHHHHhhHHHHHHHHh
Confidence 6432 34567665 6644 356777766666666776 49999999999999999974
No 36
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=87.03 E-value=16 Score=34.16 Aligned_cols=77 Identities=6% Similarity=-0.002 Sum_probs=55.6
Q ss_pred cHHHHHHHHcCCEEEEEEehhhHHHHHHcC--CCeEEEeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHH
Q 036082 87 SAHHLKAFGIGDVWVAVGWSSDVLPAVKHM--SNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEF 164 (315)
Q Consensus 87 ~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~--~~i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInf 164 (315)
..+....|.+|+++.++.|......+.... ..+-+-+++ . -+.+.+++.+.-.|++ ..++|++-
T Consensus 184 ~~~~~~al~~g~vDaa~i~~~~a~~a~~~~~~~~l~~e~~~-~-~~~~~~~v~~~~~~~~------------~~~~l~~a 249 (271)
T PRK11063 184 APQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKD-S-PYVNLIVAREDNKDAE------------NVKKFVQA 249 (271)
T ss_pred HHHHHHhcccccccEEEEChHHHHHcCCCCCCCeeEECCCC-C-CeEEEEEECCcccCCH------------HHHHHHHH
Confidence 456778899999999999987776653322 122222222 2 3457788888877777 99999999
Q ss_pred HhcHHHHHHHHhh
Q 036082 165 CLQTARALPFKQE 177 (315)
Q Consensus 165 llspe~q~~~~~e 177 (315)
+.|+|++..+.++
T Consensus 250 ~~s~~v~~~i~~~ 262 (271)
T PRK11063 250 YQSDEVYEAANKV 262 (271)
T ss_pred HcCHHHHHHHHHH
Confidence 9999999998753
No 37
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=85.99 E-value=1.6 Score=40.67 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=41.8
Q ss_pred HcCCEEEEEEehhhHHHHHHcC--CCeEE-EeCCC-----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHh
Q 036082 95 GIGDVWVAVGWSSDVLPAVKHM--SNVAV-VPKSG-----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCL 166 (315)
Q Consensus 95 ~~Gev~~~~~ws~~~~~~~~~~--~~i~~-~PkeG-----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfll 166 (315)
..|-.++-+++.+.+...+++. ..++. +|+-. ...|+|-.+=- +|.-++|..++|||.
T Consensus 212 eRglGDVLItFEsE~~~irkqyg~d~~evVvP~~siLAEFPVa~Vdkvv~k--------------~Gt~~~AkaYl~~LY 277 (341)
T COG4150 212 ERGLGDVLITFESEVNNIRKQYGADKFEVVVPKTSILAEFPVAWVDKVVDK--------------NGTEKAAKAYLNYLY 277 (341)
T ss_pred hhccccEEEEeehhhccHHHHhCcccceEeccchhhhhhcchhHHhhhhhh--------------cccHHHHHHHHHHhc
Confidence 3444455566666666665543 34555 77532 22344433222 244459999999999
Q ss_pred cHHHHHHHHh
Q 036082 167 QTARALPFKQ 176 (315)
Q Consensus 167 spe~q~~~~~ 176 (315)
||+.|..+++
T Consensus 278 sp~~Q~i~a~ 287 (341)
T COG4150 278 SPQAQTIIAE 287 (341)
T ss_pred CcHHHHHHHH
Confidence 9999999984
No 38
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=81.50 E-value=40 Score=31.40 Aligned_cols=151 Identities=15% Similarity=0.095 Sum_probs=75.7
Q ss_pred CCCCcC-CCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--ccCCceEeecCh---HHHhhHHHHHHHHH-
Q 036082 9 DAGEID-PRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELAGRISMVNSP---REVIGSIAVQLNLA- 81 (315)
Q Consensus 9 ~~~~~D-pdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~Gki~~~d~~---~~~~g~a~~~~a~~- 81 (315)
....|| .+.=.+-..+.....+|+.+++. +-+||+||.+- +-.+++.+-... .+.+.+..+.+...
T Consensus 59 ~~~~y~~~~df~pv~~~~~~~~vl~v~~ds-------p~~t~~eli~~ak~~p~~~~~g~~g~g~~~hl~~~~l~~~~G~ 131 (274)
T PF03401_consen 59 GKVPYDPLDDFTPVARIASDPNVLVVRADS-------PYKTLEELIEYAKANPGKLTFGSSGPGSSDHLAAALLAKAAGI 131 (274)
T ss_dssp ST-SS-TTTSEEEEEEEEEEEEEEEEETTS-------S-SSHHHHHHHHHCSCCC-EEEESSTTSHHHHHHHHHHHHHT-
T ss_pred cCCCCChhhhhheehhhhccceEEEEeCCC-------ccccHHHHHHHHHhCCCCeEEEecCCCchHHHHHHHHHHHhCC
Confidence 344555 33333333444446677777753 67999999974 234677664321 11122222222211
Q ss_pred HHHh----hcHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeE------------E--Ee---CCCc----eeeeeeEEE
Q 036082 82 LLAN----QSAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVA------------V--VP---KSGA----SLWADLWAI 136 (315)
Q Consensus 82 ~L~~----~~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~------------~--~P---keG~----~~~~d~~~I 136 (315)
.+.- .+.+....+..|++++++...+.+....+.+ +++ + +| +.|. ....-++.+
T Consensus 132 ~~~~Vpy~G~~~~~~allgG~vd~~~~~~~~~~~~~~~G-~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~ 210 (274)
T PF03401_consen 132 KFTHVPYDGGAEALTALLGGHVDAAFGSPGEALPYVEAG-DLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFA 210 (274)
T ss_dssp --EEEE-SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTT-SEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEE
T ss_pred ceEEEEeCCccHHHHHHhCCeeeEEeecHHHHHHHHhCC-CceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeec
Confidence 1111 1457788999999999988877776665543 121 1 23 1232 122347788
Q ss_pred eCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 137 PAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 137 ~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
||+.+... -......|-+-+-+||.+..+.+
T Consensus 211 p~gtp~~~---------~~~l~~a~~~~~~~pe~~~~~~~ 241 (274)
T PF03401_consen 211 PKGTPDEI---------VDKLADAIKKALEDPEFQEFLEK 241 (274)
T ss_dssp ETTS-HHH---------HHHHHHHHHHHHT-HHHHHHHHH
T ss_pred CCCCCHHH---------HHHHHHHHHHHhCCHHHHHHHHH
Confidence 99988532 00133344445556888877653
No 39
>PF12727 PBP_like: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily []. It is often associated with a helix-turn-helix domain.
Probab=79.77 E-value=21 Score=31.64 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEEEeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHH
Q 036082 88 AHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFC 165 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfl 165 (315)
......++.|.++++++....+ .....++|+|-.-. ...++|++..-..+ ...+||+|+
T Consensus 134 ~~vA~aVa~G~AD~G~g~~~~A----~~~~gL~Fvpl~~E---~~dlv~~~~~~~~~------------~vq~ll~~l 192 (193)
T PF12727_consen 134 LAVAAAVASGKADAGIGIRAAA----EEFYGLDFVPLAEE---RYDLVIRREDLEDP------------AVQALLDFL 192 (193)
T ss_pred HHHHHHHHcCCCCEEeehHHHH----HhhcCCCcEEcccc---ceEEEEEhhHcCCH------------HHHHHHHHh
Confidence 3567889999999999653222 12246777663222 22678899887766 899999987
No 40
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=79.56 E-value=50 Score=30.93 Aligned_cols=77 Identities=9% Similarity=0.035 Sum_probs=51.0
Q ss_pred cHHHHHHHHcCCEEEEEEehhhHHHHHHcC-CC-eEEEeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHH
Q 036082 87 SAHHLKAFGIGDVWVAVGWSSDVLPAVKHM-SN-VAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEF 164 (315)
Q Consensus 87 ~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~-~~-i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInf 164 (315)
..+....|.+|.+++++.|.+.+...-... .+ +..-+.. . -+...+++.++-++.+ ..++|++.
T Consensus 185 ~~q~~~al~dg~vD~a~i~~~~~~~ag~~~~~~~l~~e~~~-~-~~~n~~~~r~~~~~~~------------~~~~lv~~ 250 (272)
T PRK09861 185 GAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDKN-S-PYVNILVAREDNKNAE------------NVKEFLQS 250 (272)
T ss_pred HHHhHhhccCcccCEEEEchhHHHHcCCCcccceeEEcCCC-C-CeEEEEEEcCCccCCH------------HHHHHHHH
Confidence 456778899999999999987776422111 11 1111111 1 2445667766655555 89999999
Q ss_pred HhcHHHHHHHHhh
Q 036082 165 CLQTARALPFKQE 177 (315)
Q Consensus 165 llspe~q~~~~~e 177 (315)
+-|+|+...+.+.
T Consensus 251 ~~s~~v~~~i~~~ 263 (272)
T PRK09861 251 YQSPEVAKAAETI 263 (272)
T ss_pred HcCHHHHHHHHHH
Confidence 9999999998753
No 41
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=77.08 E-value=16 Score=30.15 Aligned_cols=110 Identities=18% Similarity=0.177 Sum_probs=57.2
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHH-HhhcHHHHHHHHcCC
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALL-ANQSAHHLKAFGIGD 98 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L-~~~~~~~~~~~~~Ge 98 (315)
+..|+.....+++.+++. ++.+|+||-. .+|++.........+.......... .....+...++.+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~-------~~~~~~dL~g----~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 147 (219)
T smart00062 79 FSDPYYKSGQVILVRKDS-------PIKSLEDLKG----KKVAVVAGTTGEELLKKLYPEAKIVSYDSQAEALAALKAGR 147 (219)
T ss_pred eccceeeceeEEEEecCC-------CCCChHHhCC----CEEEEecCccHHHHHHHhCCCceEEEcCCHHHHHHHhhcCc
Confidence 556666666677776642 4689999931 2466554221110010000000000 000345678999999
Q ss_pred EEEEEEehhhHHHHHHcC--CCeEEEeCCCceeeeeeEEEeCCC
Q 036082 99 VWVAVGWSSDVLPAVKHM--SNVAVVPKSGASLWADLWAIPAAS 140 (315)
Q Consensus 99 v~~~~~ws~~~~~~~~~~--~~i~~~PkeG~~~~~d~~~I~k~s 140 (315)
+++++.+........... ..+.+++........-.+++.++.
T Consensus 148 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
T smart00062 148 ADAAVADAPALAALVKQHGLPELKIVGDPLDTPEGYAFAVRKGD 191 (219)
T ss_pred ccEEEeccHHHHHHHHhcCCCceeeccCCCCCCcceEEEEECCC
Confidence 999999888766655544 344443322222133456666664
No 42
>TIGR00363 lipoprotein, YaeC family. This family of putative lipoproteins contains a consensus site for lipoprotein signal sequence cleavage. Included in this family is the E. coli hypothetical protein yaeC. About half of the proteins between the noise and trusted cutoffs contain the consensus lipoprotein signature and may belong to this family.
Probab=72.68 E-value=19 Score=33.58 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=54.3
Q ss_pred cHHHHHHHHcCCEEEEEEehhhHHHHHHcC--CCeEEEeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHH
Q 036082 87 SAHHLKAFGIGDVWVAVGWSSDVLPAVKHM--SNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEF 164 (315)
Q Consensus 87 ~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~--~~i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInf 164 (315)
..+....|.+|++++++.|.+....+...- ..+.+-+.+ .+ +.+.+++.++-.+.+ ..++|++-
T Consensus 171 ~~~~~~al~~g~vDaa~v~~~~~~~agl~~~~~~i~~e~~~-~~-~~n~l~~r~~~~~~~------------~~~~lv~~ 236 (258)
T TIGR00363 171 TSQLPRALDDPKVDLAVINTTYAGQVGLNPQDDGVFVEDKD-SP-YVNIIVSREDNKDAE------------NVKDFIQS 236 (258)
T ss_pred HHHHHHHhhcccccEEEEChHHHHHcCCCcCcCceeecCCC-CC-eeEEEEEcCCccCCH------------HHHHHHHH
Confidence 446778899999999999988776653221 122221111 22 346777877766666 89999999
Q ss_pred HhcHHHHHHHHhh
Q 036082 165 CLQTARALPFKQE 177 (315)
Q Consensus 165 llspe~q~~~~~e 177 (315)
+-|++++..+.+.
T Consensus 237 ~~s~~v~~~i~~~ 249 (258)
T TIGR00363 237 YQSEEVYQAAQKH 249 (258)
T ss_pred HcCHHHHHHHHHH
Confidence 9999999999754
No 43
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=62.73 E-value=1.4e+02 Score=28.08 Aligned_cols=74 Identities=11% Similarity=0.028 Sum_probs=44.0
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCC-ceEeecChHHHhhHHHHHHHHHHHH---hh-----cHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSIAVQLNLALLA---NQ-----SAH 89 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~G-ki~~~d~~~~~~g~a~~~~a~~~L~---~~-----~~~ 89 (315)
.|+-||.....+++++++. .+++|+|| +| +|++..+.... .. +.+...... +. ..+
T Consensus 125 ~fS~Py~~~~~~lv~r~~~-------~i~sl~dL-----~Gk~V~v~~gs~~~-~~--l~~~~~~~~~~~~i~~~~~~~~ 189 (302)
T PRK10797 125 AFSDTIFVVGTRLLTKKGG-------DIKDFADL-----KGKAVVVTSGTTSE-VL--LNKLNEEQKMNMRIISAKDHGD 189 (302)
T ss_pred eecccEeeccEEEEEECCC-------CCCChHHc-----CCCEEEEeCCCcHH-HH--HHHHhhhcCCceEEEEeCCHHH
Confidence 4888999999999998862 36889988 34 45554332110 01 111111000 00 236
Q ss_pred HHHHHHcCCEEEEEEehh
Q 036082 90 HLKAFGIGDVWVAVGWSS 107 (315)
Q Consensus 90 ~~~~~~~Gev~~~~~ws~ 107 (315)
...++.+|++++.+.-..
T Consensus 190 ~l~~L~~GrvDa~i~d~~ 207 (302)
T PRK10797 190 SFRTLESGRAVAFMMDDA 207 (302)
T ss_pred HHHHHHcCCceEEEccHH
Confidence 778899999998875443
No 44
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=62.60 E-value=94 Score=26.86 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCEEEEEEehh--hHHHHHHcCCCeEE--EeCCCc-eeeeeeEEEeCCC--CCcccccCCCCCCCHHHHHH
Q 036082 88 AHHLKAFGIGDVWVAVGWSS--DVLPAVKHMSNVAV--VPKSGA-SLWADLWAIPAAS--RLETKQIGGRVRGLSPLIHQ 160 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~--~~~~~~~~~~~i~~--~PkeG~-~~~~d~~~I~k~s--~~~~~~~~~~~~~~~~~A~~ 160 (315)
.+...+|.+|+++++..|.. ........+..+.+ ....|. ....+.++..+.. .|++ .+.+
T Consensus 130 ~~~~~al~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe------------~~~~ 197 (216)
T PF09084_consen 130 PELAQALLSGQVDAAILWYPPWEPYEIASKGKKLRVLELSDYGPPNYPVSVLVARDEFLEKNPE------------AVKA 197 (216)
T ss_dssp HHHHHHHHTTSSSEEEEEEECTCHHHHHHCCSCEEEEEGGGCCGGCS-SEEEEEEHHHHHHSHH------------HHHH
T ss_pred hhhhhhhhcCCCCEEEEccCChHHHHHHHcCCceeeeeccccCcccccceEEEEchHHHHHCHH------------HHHH
Confidence 34556999999998884443 45555567777776 444555 3444555554432 2444 7888
Q ss_pred HHHHHhc
Q 036082 161 WIEFCLQ 167 (315)
Q Consensus 161 FInflls 167 (315)
|+.-+..
T Consensus 198 f~~a~~~ 204 (216)
T PF09084_consen 198 FLKAYAK 204 (216)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876554
No 45
>COG0226 PstS ABC-type phosphate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=60.33 E-value=91 Score=29.78 Aligned_cols=155 Identities=13% Similarity=0.160 Sum_probs=76.7
Q ss_pred CeEeeeeeeceEEEEEecccccccCC----------CCCCChHhhcCcccCCceEeecCh-----HHHhhHHHHH--HH-
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNL----------APIEDWKDLWRPELAGRISMVNSP-----REVIGSIAVQ--LN- 79 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl----------~~P~SW~dL~dp~~~Gki~~~d~~-----~~~~g~a~~~--~a- 79 (315)
++--+|..++..+++||.+-....+| -..++|+|+.-+....+|.....+ ++.|-.-... +.
T Consensus 115 ~l~~~pva~d~i~vi~N~~~~~~~~Lt~~~l~~If~G~it~W~d~~~~~~n~~I~vv~R~~~SGT~~~F~~~l~~~~~~~ 194 (318)
T COG0226 115 KLVEFPVAIDAIVVIVNLPNPDVLNLTKDQLADIFSGKITNWNDVGGQLLNPGITVVGRSDGSGTTETFTEYLLGWKKKV 194 (318)
T ss_pred CceEeeEEeeeEEEEEcCCCccccccCHHHHHHHhcCCCccccccCcccCCCCceEEecCCCCchHHHHHHHHHhhhhcc
Confidence 46678999999999999988742222 145677776543333345544321 2222111000 00
Q ss_pred -----HHH---HH-hhcHHHHHHHHcCCEEEEEEehhhHHHHH-------HcCCCeE--EEe------CCCc-eeeeeeE
Q 036082 80 -----LAL---LA-NQSAHHLKAFGIGDVWVAVGWSSDVLPAV-------KHMSNVA--VVP------KSGA-SLWADLW 134 (315)
Q Consensus 80 -----~~~---L~-~~~~~~~~~~~~Gev~~~~~ws~~~~~~~-------~~~~~i~--~~P------keG~-~~~~d~~ 134 (315)
... .. +.+......+.+-.-.++...-+.+.... .....+. +.| ..-- +++...+
T Consensus 195 ~~g~~~~~~~~~~~~~n~~v~~~v~~tp~aIGYv~~~y~~~n~~~~~~~~~~~~~~~~~v~p~~~~i~~~~y~Pi~~~~~ 274 (318)
T COG0226 195 GAGKTVDWPAAVGGKGNEGVVAAVSQTPGAIGYVGYAYAVQNNLKLAALANKAGGVGPTVEPTAENIANGKYSPIVRPLF 274 (318)
T ss_pred ccCcccccCccccCCCcHHHHHHHhcCCCceEEEeehhhhcccchhhhhhcccCCcCccccCHHHHHhcCCccccceeeE
Confidence 000 00 00345566666666666543222221110 0110011 122 1223 6666666
Q ss_pred EEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCC
Q 036082 135 AIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGAS 183 (315)
Q Consensus 135 ~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~ 183 (315)
.+.+..++.+ ...+.++||+|++++..+. +.. -.||.+
T Consensus 275 ~~v~~~~~~~---------~~~~~~~Fi~~~~~~~~~~-~~~-~~Gyvp 312 (318)
T COG0226 275 IYVNKNPKDT---------KAPAVKAFLDWALSPGGQQ-IVE-EVGYVP 312 (318)
T ss_pred EEEcCCcccc---------chHHHHHHHHHHhcccchh-hhc-cCCccc
Confidence 6666544310 1128999999999998887 442 356643
No 46
>PF03180 Lipoprotein_9: NLPA lipoprotein; InterPro: IPR004872 This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to IPR001638 from INTERPRO which are solute binding proteins.; PDB: 4EF2_A 4EF1_B 3GXA_C 3IR1_D 3TQW_A 3K2D_B 3UP9_A 1XS5_A 1P99_A.
Probab=60.23 E-value=42 Score=30.94 Aligned_cols=76 Identities=12% Similarity=0.015 Sum_probs=46.8
Q ss_pred HHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhc
Q 036082 89 HHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQ 167 (315)
Q Consensus 89 ~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInflls 167 (315)
+..+.|.. +++++.+.+.+..+--.-..-.+ .......-+...+++.+.-++.+ ..+++++.+.|
T Consensus 153 ~l~~~l~d--vD~avi~~~~a~~agl~~~~~~~~~e~~~~~~y~n~lv~r~~~~d~~------------~ik~l~ea~~s 218 (237)
T PF03180_consen 153 QLPRALDD--VDAAVINGNYALDAGLDPKKDLLFEEPDADKPYANVLVVREDDKDDP------------WIKKLVEAYQS 218 (237)
T ss_dssp GHHHHTTT--SSEEEE-HHHHHHTT--CCCHSSEE-SSSSCGGEEEEEEEGGGTTCH------------HHHHHHHHHTS
T ss_pred hHHhhccc--CCEEEecHhHHHHcCcCcccceeeeecccCcceeEEEEEECCccCCH------------HHHHHHHHHCC
Confidence 34444444 77778776655333211111112 22122455667888888777776 89999999999
Q ss_pred HHHHHHHHhhh
Q 036082 168 TARALPFKQEV 178 (315)
Q Consensus 168 pe~q~~~~~e~ 178 (315)
++++..+.+.+
T Consensus 219 ~~v~~~i~~~~ 229 (237)
T PF03180_consen 219 PEVKKFIEETY 229 (237)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHc
Confidence 99999998653
No 47
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=55.20 E-value=3.7 Score=39.00 Aligned_cols=33 Identities=36% Similarity=0.811 Sum_probs=21.9
Q ss_pred cchhhhc-ccccchhhhhhhhh-------HHHhhhhhcccc
Q 036082 281 DECLFEQ-SCCQSCRVREERSR-------RECHRFLHHCSL 313 (315)
Q Consensus 281 ~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 313 (315)
|+-++-. --|.||+.+.-..- |=.|||=|||--
T Consensus 141 Dy~if~k~~kCSTCki~KPARSKHCsiCNrCV~rfDHHCiW 181 (341)
T KOG1312|consen 141 DYVIFPKNVKCSTCKIRKPARSKHCSICNRCVHRFDHHCIW 181 (341)
T ss_pred cceeecCCCccccccCCCccccccchHHHHHHHHhccceEe
Confidence 4444443 67999998764332 334999999953
No 48
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=50.35 E-value=16 Score=33.86 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHhcHHHHHHHHh
Q 036082 154 LSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 154 ~~~~A~~FInfllspe~q~~~~~ 176 (315)
+..+|.+||+|++|++.|..+++
T Consensus 238 ny~~A~kfi~w~~s~~gq~~Ia~ 260 (280)
T COG2998 238 NYTAATKFIEWLMSEKGQNLIAE 260 (280)
T ss_pred CchHHHHHHHHHhhHHHHHHHhh
Confidence 35589999999999999988873
No 49
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=50.10 E-value=1.8e+02 Score=25.73 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=54.2
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHH--HHHHhh--cHHHHHHHH
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNL--ALLANQ--SAHHLKAFG 95 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~--~~L~~~--~~~~~~~~~ 95 (315)
|+-||.....++++.++. ..+++|+||-.. +|++..+.... .. +.+.. ..+... ..+..+++.
T Consensus 103 fs~p~~~~~~~~~~~~~~------~~~~~~~dL~g~----~I~v~~g~~~~-~~--l~~~~~~~~i~~~~~~~~~~~~L~ 169 (247)
T PRK09495 103 FSDGYYKSGLLVMVKANN------NDIKSVKDLDGK----VVAVKSGTGSV-DY--AKANIKTKDLRQFPNIDNAYLELG 169 (247)
T ss_pred ccchheecceEEEEECCC------CCCCChHHhCCC----EEEEecCchHH-HH--HHhcCCCCceEEcCCHHHHHHHHH
Confidence 566887777888887653 157899988421 45554332110 00 01110 001111 235578899
Q ss_pred cCCEEEEEEehhhHHHHHHcC--CCeEEEeCCCceeeeeeEEEeCCC
Q 036082 96 IGDVWVAVGWSSDVLPAVKHM--SNVAVVPKSGASLWADLWAIPAAS 140 (315)
Q Consensus 96 ~Gev~~~~~ws~~~~~~~~~~--~~i~~~PkeG~~~~~d~~~I~k~s 140 (315)
+|++++.+..........++. ..+...+.... .....++++++.
T Consensus 170 ~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~ 215 (247)
T PRK09495 170 TGRADAVLHDTPNILYFIKTAGNGQFKAVGDSLE-AQQYGIAFPKGS 215 (247)
T ss_pred cCceeEEEeChHHHHHHHHhCCCCceEEecCccc-ccceEEEEcCcH
Confidence 999999887654443333322 23444222111 112356777654
No 50
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=48.86 E-value=92 Score=25.63 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=67.9
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCC-ceEeecChHHHhhHHHHHHHHHHHHhh----cHHHHHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSIAVQLNLALLANQ----SAHHLKA 93 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~G-ki~~~d~~~~~~g~a~~~~a~~~L~~~----~~~~~~~ 93 (315)
.+..|+.....+++.+++. +..+++|| +| +|.+..... +... +...+...... ..+...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~-------~~~~~~dl-----~g~~i~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 141 (218)
T cd00134 77 DFSDPYYKSGQVILVKKGS-------PIKSVKDL-----KGKKVAVQKGST--AEKY-LKKALPEAKVVSYDDNAEALAA 141 (218)
T ss_pred cCcccceeccEEEEEECCC-------CCCChHHh-----CCCEEEEEcCch--HHHH-HHHhCCcccEEEeCCHHHHHHH
Confidence 3455777788888888764 33477776 34 355542111 1110 11111100000 3467889
Q ss_pred HHcCCEEEEEEehhhHHHHHHcC-CCeEEEeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHh
Q 036082 94 FGIGDVWVAVGWSSDVLPAVKHM-SNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCL 166 (315)
Q Consensus 94 ~~~Gev~~~~~ws~~~~~~~~~~-~~i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfll 166 (315)
+.+|++++++.+...+.....+. .++.+++.. .......+++.+...+++ +..+|-+++.
T Consensus 142 l~~g~~d~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~------------l~~~~~~~l~ 202 (218)
T cd00134 142 LENGRADAVIVDEIALAALLKKHPPELKIVGPS-IDLEPLGFGVAVGKDNKE------------LLDAVNKALK 202 (218)
T ss_pred HHcCCccEEEeccHHHHHHHHhcCCCcEEeccc-cCCCccceEEEEcCCCHH------------HHHHHHHHHH
Confidence 99999999999887776655543 456653322 112233556666666655 7788888877
No 51
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=47.41 E-value=1.2e+02 Score=30.58 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=59.1
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHH----Hh--hcHHHHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALL----AN--QSAHHLK 92 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L----~~--~~~~~~~ 92 (315)
.++.||.....+++++++.. .+++++||-. .+|++..+....-.+..+......+ .. ...+..+
T Consensus 120 ~FS~Py~~~~~~lv~r~~~~------~i~~l~dL~G----k~I~V~~gS~~~~~L~~l~~~~p~i~~~~~~~~s~~e~l~ 189 (482)
T PRK10859 120 RFGPPYYSVSQQLVYRKGQP------RPRSLGDLKG----GTLTVAAGSSHVETLQELKKKYPELSWEESDDKDSEELLE 189 (482)
T ss_pred cccCCceeeeEEEEEeCCCC------CCCCHHHhCC----CeEEEECCCcHHHHHHHHHHhCCCceEEecCCCCHHHHHH
Confidence 36778888888899988651 5788888842 2466554322110011111100000 00 0246788
Q ss_pred HHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeC-CCceeeeeeEEEeCC
Q 036082 93 AFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPK-SGASLWADLWAIPAA 139 (315)
Q Consensus 93 ~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~Pk-eG~~~~~d~~~I~k~ 139 (315)
++.+|++++.+.-...+.......+++.+ .+- +... -.|+++++
T Consensus 190 aL~~G~iDa~v~d~~~~~~~~~~~p~l~v~~~l~~~~~---~~~av~k~ 235 (482)
T PRK10859 190 QVAEGKIDYTIADSVEISLNQRYHPELAVAFDLTDEQP---VAWALPPS 235 (482)
T ss_pred HHHCCCCCEEEECcHHHHHHHHhCCCceeeeecCCCce---eEEEEeCC
Confidence 99999999988765544434444566665 331 1122 26788874
No 52
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=45.11 E-value=2.2e+02 Score=26.38 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCEEEEEEehhhHHHHHHc
Q 036082 88 AHHLKAFGIGDVWVAVGWSSDVLPAVKH 115 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~~~~~~~~~ 115 (315)
.+...+|.+|+++++..|......+...
T Consensus 166 ~~~~~al~~G~vDa~~~~ep~~~~~~~~ 193 (314)
T PRK11553 166 ADARAAFQQGNVDAWAIWDPYYSAALLQ 193 (314)
T ss_pred HHHHHHHHcCCCCEEEEcCcHHHHHHhc
Confidence 4667899999999999998766555443
No 53
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=44.51 E-value=2.4e+02 Score=26.01 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=41.3
Q ss_pred cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE---EeCCCceeeeeeEEEeCC--CCCcccccCCCCCCCHHHHHHH
Q 036082 87 SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV---VPKSGASLWADLWAIPAA--SRLETKQIGGRVRGLSPLIHQW 161 (315)
Q Consensus 87 ~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~---~PkeG~~~~~d~~~I~k~--s~~~~~~~~~~~~~~~~~A~~F 161 (315)
..+...+|.+|++++++.|......+...+..+.. ++.-|.+. .+.+++..+ .+|++ ++.+|
T Consensus 136 ~~~~~~al~~G~vDa~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~------------~~~~~ 202 (300)
T TIGR01729 136 PPQIVAAWQRGDIDAAYVWPPALSELLKSGKVISDSEQVGAWGAPT-FDGWVVRKDFAEKNPE------------FVAAF 202 (300)
T ss_pred cHHHHHHHHcCCcCEEEEecHHHHHHHhcCcEEecchhccccCCCc-eeEEEECHHHHHHCHH------------HHHHH
Confidence 35678899999999999998877666665532211 11111111 244444332 13666 89999
Q ss_pred HHHHhc
Q 036082 162 IEFCLQ 167 (315)
Q Consensus 162 Inflls 167 (315)
+.-+..
T Consensus 203 ~~a~~~ 208 (300)
T TIGR01729 203 TKVLAD 208 (300)
T ss_pred HHHHHH
Confidence 877665
No 54
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=43.89 E-value=2.2e+02 Score=24.77 Aligned_cols=126 Identities=13% Similarity=0.123 Sum_probs=66.1
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCC-ceEeecChHHHhhHHH--HHHHHHHH---H----h-hcH
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSIA--VQLNLALL---A----N-QSA 88 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~G-ki~~~d~~~~~~g~a~--~~~a~~~L---~----~-~~~ 88 (315)
++.||.....++++.++.-. .+++|+|+ .++| +|++..+....-.+.. ........ . . ...
T Consensus 73 fs~py~~~~~~lv~~~~~~~-----~~~~~~d~---~l~g~~V~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (232)
T TIGR03871 73 TTRPYYRSTYVFVTRKDSLL-----DVKSLDDP---RLKKLRIGVFAGTPPAHWLARHGLVENVVGYSLFGDYRPESPPG 144 (232)
T ss_pred ccCCcEeeeEEEEEeCCCcc-----cccchhhh---hhcCCeEEEEcCChHHHHHHhcCcccccccccccccccccCCHH
Confidence 56788877888888877421 46778772 1233 5666543221100100 00000000 0 0 125
Q ss_pred HHHHHHHcCCEEEEEEehhhHHHHHH-cCCCeEE--EeC--CCce-eeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHH
Q 036082 89 HHLKAFGIGDVWVAVGWSSDVLPAVK-HMSNVAV--VPK--SGAS-LWADLWAIPAASRLETKQIGGRVRGLSPLIHQWI 162 (315)
Q Consensus 89 ~~~~~~~~Gev~~~~~ws~~~~~~~~-~~~~i~~--~Pk--eG~~-~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FI 162 (315)
+..+++.+|++++++..........+ .+.++.+ .+. ...+ .+.-+++++++ +.+ ++..|-
T Consensus 145 ~~~~~l~~G~~Da~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------l~~~~n 210 (232)
T TIGR03871 145 RMVEDLAAGEIDVAIVWGPIAGYFAKQAGPPLVVVPLLPEDGGIPFDYRIAMGVRKG--DKA------------WKDELN 210 (232)
T ss_pred HHHHHHHcCCcCEEEeccHHHHHHHHhCCCCceeeccccCCCCCCccceEEEEEecC--CHH------------HHHHHH
Confidence 67889999999999987655443333 3334444 222 1111 12336667765 344 777887
Q ss_pred HHHhc
Q 036082 163 EFCLQ 167 (315)
Q Consensus 163 nflls 167 (315)
.++.+
T Consensus 211 ~~l~~ 215 (232)
T TIGR03871 211 AVLDR 215 (232)
T ss_pred HHHHH
Confidence 77733
No 55
>COG1910 Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]
Probab=43.28 E-value=2.2e+02 Score=26.19 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEEEeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhc
Q 036082 88 AHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQ 167 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInflls 167 (315)
......+++|+++++++-- ...+-..++|+|-.-.. ..++|.|..-.++ .-++|++-|-|
T Consensus 140 ~avA~aVa~G~AD~GvGlr-----~~A~~~gL~Fipl~~E~---YD~virke~~~~~------------~vr~fi~~L~s 199 (223)
T COG1910 140 DAVASAVASGRADAGVGLR-----HAAEKYGLDFIPLGDEE---YDFVIRKERLDKP------------VVRAFIKALKS 199 (223)
T ss_pred HHHHHHHHcCCCCccccHH-----HHHHHcCCceEEcccce---EEEEEehhHccCH------------HHHHHHHHhcc
Confidence 3567889999999998632 22233467786632111 2677888777666 88999999988
Q ss_pred HHHHHH
Q 036082 168 TARALP 173 (315)
Q Consensus 168 pe~q~~ 173 (315)
.+..+.
T Consensus 200 ~~~~~~ 205 (223)
T COG1910 200 EGFAAN 205 (223)
T ss_pred cccccc
Confidence 444433
No 56
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=39.44 E-value=1.7e+02 Score=28.19 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=51.0
Q ss_pred eceEEEEEecccccccCCCCCCChHhhcCcccC--------Cc--eEeecChHHHhhHHHHHHHHHH------HH--hh-
Q 036082 26 WGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELA--------GR--ISMVNSPREVIGSIAVQLNLAL------LA--NQ- 86 (315)
Q Consensus 26 ~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~--------Gk--i~~~d~~~~~~g~a~~~~a~~~------L~--~~- 86 (315)
-+..|+++.+...+.+ ..+||+||-+++++ || |.-.+......... ++.++. +. ..
T Consensus 112 ~a~~G~~VP~yv~e~~---gI~Si~DL~~~~~a~~F~~e~~gkg~i~g~~~G~~~~~~~--~~~l~~yGL~~~~~~~~~S 186 (331)
T PRK11119 112 GAAQGYLIDKKTADKY---NITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEAVI--NHQLKAYGLEDTVTHNQGN 186 (331)
T ss_pred CcceeeeecHHHHHHc---CCCCHHHhCCcHHHHhcCCCCCCCcceECCCCCccccHHH--HHHHHhcCCCcceeECCCC
Confidence 3467899988766543 47899999865433 33 43222111111110 111111 11 11
Q ss_pred ----cHHHHHHHHcCCEEEEEEehhhHHHHHH-cCCCeEE
Q 036082 87 ----SAHHLKAFGIGDVWVAVGWSSDVLPAVK-HMSNVAV 121 (315)
Q Consensus 87 ----~~~~~~~~~~Gev~~~~~ws~~~~~~~~-~~~~i~~ 121 (315)
.++...++.+|+..+...|+..+....- .+.++.|
T Consensus 187 ~aam~a~l~~A~~~~epiv~~~W~Phw~~~~~~~~~dl~~ 226 (331)
T PRK11119 187 YAALMADTIARYKEGKPVLYYTWTPYWVSDVLKPGKDVVW 226 (331)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecchhHHhhccCCCCeEE
Confidence 2355678899999999999998876543 2335665
No 57
>PF03202 Lipoprotein_10: Putative mycoplasma lipoprotein, C-terminal region; InterPro: IPR004890 This domain is found along with a central domain (IPR004984 from INTERPRO) in a group of Mycoplasma lipoproteins of unknown function.
Probab=35.56 E-value=36 Score=28.81 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=21.5
Q ss_pred eeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcH
Q 036082 131 ADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQT 168 (315)
Q Consensus 131 ~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllsp 168 (315)
++.++|-++.+.-+ ++++|++||++.
T Consensus 6 PsLIGIhaNekeD~------------aTkkFv~Wll~~ 31 (135)
T PF03202_consen 6 PSLIGIHANEKEDK------------ATKKFVNWLLNS 31 (135)
T ss_pred CceeeeccCccccH------------HHHHHHHHHHcC
Confidence 45788888887766 899999999984
No 58
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A.
Probab=27.93 E-value=4.4e+02 Score=23.54 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=51.4
Q ss_pred eceEEEEEecccccccCCCCCCChHhhcCccc--CCc-eEeec--ChHHHhhHHHH-HHHHHHHHhh------cHHHHHH
Q 036082 26 WGTVVIAYKKSKFRKHNLAPIEDWKDLWRPEL--AGR-ISMVN--SPREVIGSIAV-QLNLALLANQ------SAHHLKA 93 (315)
Q Consensus 26 ~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~--~Gk-i~~~d--~~~~~~g~a~~-~~a~~~L~~~------~~~~~~~ 93 (315)
.+...++.+++.... ...+||+||.+... +|+ |++.. +..+.+....+ +..++.-... ..+..++
T Consensus 89 ~~g~~lvv~~~~~~~---~~~~~~~dl~~~~~~~kGk~i~~~~~gs~~~~~l~~~l~~~Gl~~~~dv~~~~~~~~~~~~a 165 (252)
T PF13379_consen 89 QNGNALVVRNDLKDA---SDIKSLADLIKKRKAQKGKKIAVPFPGSTHDMLLRYLLKKAGLDPKDDVTLVNVPPPEMVAA 165 (252)
T ss_dssp BSSEEEEECGGGTTC---STTCCGHHHHHTCCSCSTEEEEESSTTSHHHHHHHHHHHHTT--TTTSSEEEE--GHHHHHH
T ss_pred CCceEEEEcCccccC---CCccCHHHHHhhhcccCCcEEEEcCCCCHHHHHHHHHHHhCCCCcccceEEEecCHHHHHHH
Confidence 445677887776543 36899999975422 564 45432 22222111111 1112210111 4578899
Q ss_pred HHcCCEEEEEEehhhHHHHHHcCC
Q 036082 94 FGIGDVWVAVGWSSDVLPAVKHMS 117 (315)
Q Consensus 94 ~~~Gev~~~~~ws~~~~~~~~~~~ 117 (315)
|.+|+++.++.|......+...+.
T Consensus 166 l~~g~iDa~~~~eP~~~~~~~~g~ 189 (252)
T PF13379_consen 166 LRAGEIDAAVLWEPFASQAEAKGI 189 (252)
T ss_dssp HHTTS-SEEEEETTHHHHHHHTTS
T ss_pred HhCCCcCEEEecCCHHHHHHhccC
Confidence 999999999999988877776654
No 59
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ. This predicted periplasmic protein, called MoxJ or MxaJ, is required for methanol oxidation in Methylobacterium extorquens. Two differing lines of evidence suggest two different roles. Forming one view, homology suggests it is the substrate-binding protein of an ABC transporter associated with methanol oxidation. The gene, furthermore, is found regular in genomes with, and only two or three genes away from, a corresponding permease and ATP-binding cassette gene pair. The other view is that this protein is an accessory factor or additional subunit of methanol dehydrogenase itself. Mutational studies show a dependence on this protein for expression of the PQQ-dependent, two-subunit methanol dehydrogenase (MxaF and MxaI) in Methylobacterium extorquens, as if it is a chaperone for enzyme assembly or a third subunit. A homologous N-terminal sequence was found in Paracoccus denitrificans as a 32Kd third subunit. This protein may, in
Probab=26.90 E-value=4.6e+02 Score=23.38 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=60.7
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCC--ceEeecCh-HHHhhHHHHHH---H---HHH------
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAG--RISMVNSP-REVIGSIAVQL---N---LAL------ 82 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~G--ki~~~d~~-~~~~g~a~~~~---a---~~~------ 82 (315)
-.++.||.....+++.+++.-. .+++|+++ .++| +|++.... .+.+ +..... . ...
T Consensus 72 ~~fS~PY~~~~~~~v~~k~~~~-----~~~~~~d~---~L~g~~~vgv~~gs~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 142 (246)
T TIGR03870 72 VLTTKPYYRSSYVFLTRKDRNL-----DIKSWNDP---RLKKVSKIGVIFGSPAETM-LKQIGRYEDNFAYLYSLVNFKS 142 (246)
T ss_pred HhcccCcEEeeeEEEEeCCCCC-----CCCCccch---hhccCceEEEecCChHHHH-HHhcCccccccccccccccccC
Confidence 3468899988888999887521 35777653 2455 56665432 2211 110000 0 000
Q ss_pred ----HHhh-cHHHHHHHHcCCEEEEEEehhhHHHHHHc-CCCeEE-EeC------CCcee---eeeeEEEeCCCC
Q 036082 83 ----LANQ-SAHHLKAFGIGDVWVAVGWSSDVLPAVKH-MSNVAV-VPK------SGASL---WADLWAIPAASR 141 (315)
Q Consensus 83 ----L~~~-~~~~~~~~~~Gev~~~~~ws~~~~~~~~~-~~~i~~-~Pk------eG~~~---~~d~~~I~k~s~ 141 (315)
+... ..+..+++.+|++++++..+..+.....+ ..++.+ ... +|... +..++++.|+.+
T Consensus 143 ~~~~~~~~~~~~~~~aL~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iav~k~~~ 217 (246)
T TIGR03870 143 PRNQYTQIDPRKLVSEVATGKADLAVAFAPEVARYVKASPEPLRMTVIPDDATRSDGAKIPMQYDQSMGVRKDDT 217 (246)
T ss_pred cccccccCCHHHHHHHHHcCCCCEEEeeHHhHHHHHHhCCCCceEEeccccccccCCCCcceeeEEEEEEccCCH
Confidence 0000 13567899999999999876655544443 333544 221 22211 223688887743
No 60
>PF15091 DUF4554: Domain of unknown function (DUF4554)
Probab=26.67 E-value=23 Score=34.93 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=15.4
Q ss_pred eceEEEEEecccccccCCCCCCChHhhcCc
Q 036082 26 WGTVVIAYKKSKFRKHNLAPIEDWKDLWRP 55 (315)
Q Consensus 26 ~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp 55 (315)
++..+++.|..-+... +--.|.++.=+
T Consensus 49 ~ngIal~~~~~hY~s~---~~~~~te~~Cs 75 (458)
T PF15091_consen 49 SNGIALVVNYQHYVSR---PKFGTTELHCS 75 (458)
T ss_pred CCceeEEeehHHHhhc---cCCCcccccCc
Confidence 4556777777766531 33457666543
No 61
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=25.67 E-value=2.4e+02 Score=28.38 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=50.2
Q ss_pred HHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE---EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHH
Q 036082 88 AHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV---VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEF 164 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~---~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInf 164 (315)
.+...+++.|++...+.-|..+...+.-.|++.+ +..+ .++ .|.+|.+..+. +-...++|
T Consensus 166 ~dLle~v~~Gkldytiads~~is~~q~i~P~laVafd~tde-~~v---~Wy~~~~dd~t-------------L~a~ll~F 228 (473)
T COG4623 166 EDLLEMVAEGKLDYTIADSVEISLFQRVHPELAVAFDLTDE-QPV---AWYLPRDDDST-------------LSAALLDF 228 (473)
T ss_pred HHHHHHHhcCCcceeeeccHHHHHHHHhCccceeeeecccc-cCc---eeeccCCchHH-------------HHHHHHHH
Confidence 4678889999999999988888888877787664 5555 333 67788765443 44555666
Q ss_pred Hhc---HHHHHHHHhhhC
Q 036082 165 CLQ---TARALPFKQEVI 179 (315)
Q Consensus 165 lls---pe~q~~~~~e~~ 179 (315)
+-+ +--++.+-+.++
T Consensus 229 ~~~~~e~g~larleeky~ 246 (473)
T COG4623 229 LNEAKEDGLLARLEEKYL 246 (473)
T ss_pred HHHhhcchHHHHHHHHHh
Confidence 555 444555544444
No 62
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=25.58 E-value=27 Score=36.48 Aligned_cols=26 Identities=35% Similarity=0.908 Sum_probs=20.8
Q ss_pred ccccchhhhhhhhhHHHh-------hhhhcccc
Q 036082 288 SCCQSCRVREERSRRECH-------RFLHHCSL 313 (315)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 313 (315)
++|-+|.+|.-.+-.-|+ ||-|||.-
T Consensus 421 ~FC~~clirKp~rSkhc~vcnrcVarfDHhCPw 453 (600)
T KOG0509|consen 421 RFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPW 453 (600)
T ss_pred cceeeeeeecCCccchhhhhHHHHhccccCCCc
Confidence 599999999876655554 89999964
No 63
>KOG3244 consensus Protein involved in ubiquinone biosynthesis [Coenzyme transport and metabolism]
Probab=23.99 E-value=33 Score=31.68 Aligned_cols=19 Identities=5% Similarity=0.022 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcHH-HHHHHH
Q 036082 157 LIHQWIEFCLQTA-RALPFK 175 (315)
Q Consensus 157 ~A~~FInfllspe-~q~~~~ 175 (315)
.=+-.++-|.+.+ ++..+.
T Consensus 83 ~Le~l~~~M~~d~~GrrIL~ 102 (267)
T KOG3244|consen 83 ALENLLDRMLSDEEGRRILL 102 (267)
T ss_pred HHHHHHHHHhcCHHHHHHHH
Confidence 5667777777754 444444
No 64
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.93 E-value=7e+02 Score=24.16 Aligned_cols=81 Identities=20% Similarity=0.123 Sum_probs=46.7
Q ss_pred cHHHHHHHHcCCEEEEEEehhhHHHHHHcCC----------CeE-E--Ee---CCCceeeee---eEEEeCCCCCccccc
Q 036082 87 SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMS----------NVA-V--VP---KSGASLWAD---LWAIPAASRLETKQI 147 (315)
Q Consensus 87 ~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~----------~i~-~--~P---keG~~~~~d---~~~I~k~s~~~~~~~ 147 (315)
+.+..+.+..|++.++.+.-+......+.+. ++. + +| +.|...++. ++.+|++.+.+..
T Consensus 185 ~gea~taLlgg~v~a~~~~~se~~~~vksG~lr~Lav~s~eRl~~~pdvPT~~E~G~~~~~~~wrgvfap~g~~~e~~-- 262 (319)
T COG3181 185 GGEALTALLGGHVDAGSTNLSELLSQVKSGTLRLLAVFSEERLPGLPDVPTLKEQGYDVVMSIWRGVFAPAGTPDEII-- 262 (319)
T ss_pred ccHHHHHHhcCceeeeecChhhhhhhhccCceEEEEeechhhcCCCCCCCChHhcCCceeeeeeeEEEeCCCCCHHHH--
Confidence 5577888999999988876666655544321 111 1 44 246555543 5577777765430
Q ss_pred CCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 148 GGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 148 ~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
......|=+-+-+||.+..+.+
T Consensus 263 -------~~~~~a~kk~l~s~e~~~~~~~ 284 (319)
T COG3181 263 -------AKLSAALKKALASPEWQKRLKE 284 (319)
T ss_pred -------HHHHHHHHHHhcCHHHHHHHHh
Confidence 0122233334566888888763
No 65
>PF08115 Toxin_28: SFI toxin family; InterPro: IPR012633 This family consists of the SFI family of spider toxins. This family of toxins might share structural, evolutionary and functional relationships with other small, highly structurally constrained spider neurotoxins. These toxins are highly selective agonists/antagonists of different voltage-dependent calcium channels and are extremely valuable reagents in the analysis of neuromuscular function.; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=21.91 E-value=32 Score=21.84 Aligned_cols=10 Identities=30% Similarity=1.195 Sum_probs=7.2
Q ss_pred cchhhhcccc
Q 036082 281 DECLFEQSCC 290 (315)
Q Consensus 281 ~~~~~~~~~~ 290 (315)
+|||+|.++|
T Consensus 1 ke~mvdetvc 10 (35)
T PF08115_consen 1 KECMVDETVC 10 (35)
T ss_pred CcccccCcEE
Confidence 4799996554
No 66
>PF00123 Hormone_2: Peptide hormone; InterPro: IPR000532 A number of polypeptidic hormones, mainly expressed in the intestine or the pancreas, belong to a group of structurally related peptides [, ]. Once such hormone, glucagon is widely distributed and produced in the alpha-cells of pancreatic islets []. It affects glucose metabolism in the liver [] by inhibiting glycogen synthesis, stimulating glycogenolysis and enchancing gluconeogenesis. It also increases mobilisation of glucose, free fatty acids and ketone bodies, which are metabolites produced in excess in diabetes mellitus. Glucagon is produced, like other peptide hormones, as part of a larger precursor (preproglucagon), which is cleaved to produce glucagon, glucagon-like protein I and glucagon-like protein II []. The structure of glucagon itself is fully conserved in all known mammalian species []. Other members of the structurally similar group include glicentin precursor, secretin, gastric inhibitory protein, vasoactive intestinal peptide (VIP), prealbumin, peptide HI-27 and growth hormone releasing factor.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1T5Q_A 2OBU_A 2QKH_B 2L70_A 2L71_A 2B4N_A 1GCN_A 1D0R_A 3IOL_B 2RRI_A ....
Probab=21.47 E-value=59 Score=19.94 Aligned_cols=11 Identities=0% Similarity=0.419 Sum_probs=9.3
Q ss_pred HHHHHHHHHhc
Q 036082 157 LIHQWIEFCLQ 167 (315)
Q Consensus 157 ~A~~FInflls 167 (315)
.|++||+|+++
T Consensus 18 aak~fl~~L~~ 28 (28)
T PF00123_consen 18 AAKKFLQWLMN 28 (28)
T ss_dssp HHHHHHHHHCH
T ss_pred HHHHHHHHHhC
Confidence 78999999873
No 67
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.69 E-value=96 Score=27.28 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHHHHHHhhccchhhh
Q 036082 262 YITGCTEMAEVLEVLRETKDECLFE 286 (315)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (315)
.-+.|+-+|+||-.||+||-++..-
T Consensus 53 nndAcr~LAKQLV~lRkQKtrt~a~ 77 (208)
T KOG3231|consen 53 NNDACRVLAKQLVHLRKQKTRTFAV 77 (208)
T ss_pred CcHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4578999999999999999988543
No 68
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=20.46 E-value=51 Score=23.04 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred HHHHHHHhhccchh---hhcccccchhhh
Q 036082 271 EVLEVLRETKDECL---FEQSCCQSCRVR 296 (315)
Q Consensus 271 ~~~~~~~~~~~~~~---~~~~~~~~~~~~ 296 (315)
+.|+.+|++|+--. ++...|.+|+..
T Consensus 3 ~~Y~rl~~~~~g~~va~v~~~~C~gC~~~ 31 (56)
T PF02591_consen 3 AEYERLRKRKGGVAVARVEGGTCSGCHME 31 (56)
T ss_pred HHHHHHHhhcCCcEEEEeeCCccCCCCEE
Confidence 46888998866544 458899999864
Done!