Query 036082
Match_columns 315
No_of_seqs 252 out of 1948
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 15:40:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gl0_A LMO0810 protein; struct 100.0 4.9E-36 1.7E-40 281.8 19.6 217 4-248 93-332 (333)
2 4eqb_A Spermidine/putrescine A 100.0 2.5E-33 8.6E-38 262.3 20.7 216 4-248 91-329 (330)
3 3ttm_A Polyamine transport pro 100.0 1.5E-32 5.2E-37 257.9 16.6 210 13-247 101-346 (346)
4 3ttn_A Polyamine transport pro 100.0 3.6E-31 1.2E-35 247.3 16.7 205 17-245 101-340 (340)
5 1pot_A POTD, spermidine/putres 100.0 2.3E-29 7.7E-34 234.7 21.1 212 8-248 91-325 (325)
6 1a99_A POTF, putrescine-bindin 99.9 7.2E-27 2.5E-31 219.0 15.3 209 16-248 99-344 (344)
7 2v84_A Spermidine/putrescine A 99.9 3.5E-25 1.2E-29 208.5 17.2 196 16-246 119-342 (343)
8 4i1d_A ABC transporter substra 99.9 3.1E-24 1.1E-28 199.5 16.3 165 17-201 95-287 (324)
9 4euo_A ABC transporter, substr 99.9 3.1E-24 1.1E-28 199.9 14.5 165 18-202 92-281 (320)
10 3rpw_A ABC transporter; struct 99.9 8.4E-24 2.9E-28 200.0 15.6 167 17-202 129-322 (365)
11 3pu5_A Extracellular solute-bi 99.9 2E-22 6.8E-27 188.0 15.7 162 18-201 102-293 (333)
12 4edp_A ABC transporter, substr 99.9 7.2E-21 2.5E-25 177.0 15.0 163 16-201 128-317 (351)
13 2qry_A Thiamine-binding peripl 99.8 2.3E-19 7.8E-24 167.9 15.8 160 18-199 117-297 (330)
14 3c9h_A ABC transporter, substr 99.8 8.2E-19 2.8E-23 165.7 13.7 151 17-185 127-302 (355)
15 3quf_A Extracellular solute-bi 99.8 1.1E-18 3.6E-23 167.4 14.5 208 16-248 126-394 (414)
16 3uor_A ABC transporter sugar b 99.8 4E-18 1.4E-22 166.6 18.4 209 12-248 130-395 (458)
17 3ob4_A Conglutin, maltose ABC 99.8 3E-18 1E-22 170.5 16.0 227 12-271 98-378 (500)
18 2pt1_A Iron transport protein; 99.8 3.6E-18 1.2E-22 159.1 15.4 164 14-200 108-303 (334)
19 3k01_A Acarbose/maltose bindin 99.8 4.5E-18 1.5E-22 163.1 15.9 207 16-248 130-390 (412)
20 1xvx_A YFUA; periplasmic iron 99.8 1E-17 3.5E-22 154.6 16.5 155 14-186 93-272 (312)
21 3e13_X Putative iron-uptake AB 99.8 1.3E-17 4.4E-22 153.7 16.4 165 12-199 89-286 (322)
22 1nnf_A Iron-utilization peripl 99.8 1.8E-17 6.1E-22 152.6 17.3 154 14-185 90-267 (309)
23 1q35_A Iron binding protein FB 99.8 1.3E-17 4.4E-22 154.2 16.4 166 13-200 89-283 (320)
24 3n94_A Fusion protein of malto 99.8 1.9E-17 6.5E-22 162.7 18.3 233 16-286 102-387 (475)
25 2voz_A FUTA2, periplasmic iron 99.8 1.2E-17 4E-22 156.2 15.1 163 14-199 118-314 (346)
26 3oo8_A ABC transporter binding 99.7 3.2E-17 1.1E-21 157.1 16.3 204 16-248 129-394 (415)
27 4hs7_A Bacterial extracellular 99.7 1.1E-16 3.7E-21 154.0 19.0 153 12-183 136-341 (420)
28 2gha_A Maltose ABC transporter 99.7 7.3E-17 2.5E-21 153.4 16.3 152 16-184 98-304 (382)
29 1y9u_A Putative iron binding p 99.7 1.1E-16 3.6E-21 148.2 15.9 161 14-199 94-290 (323)
30 3py7_A Maltose-binding peripla 99.7 1.7E-16 5.9E-21 158.3 18.2 202 16-248 101-355 (523)
31 3mq9_A Bone marrow stromal ant 99.7 4.4E-16 1.5E-20 153.7 20.5 204 12-248 112-368 (471)
32 2zyo_A Solute-binding protein; 99.7 5.1E-16 1.7E-20 148.1 20.1 152 16-184 118-321 (397)
33 3i3v_A Probable secreted solut 99.7 1.5E-17 5E-22 159.0 8.9 158 16-186 113-330 (405)
34 3iot_A Maltose-binding protein 99.7 2.1E-16 7.1E-21 154.3 16.7 206 10-248 96-354 (449)
35 4h1g_A Maltose binding protein 99.7 1.3E-16 4.3E-21 165.8 15.7 233 11-296 98-383 (715)
36 1elj_A Maltodextrin-binding pr 99.7 5.8E-16 2E-20 147.1 18.9 155 12-185 103-307 (381)
37 4b3n_A Maltose-binding peripla 99.7 2.4E-16 8.2E-21 160.4 16.0 217 11-260 111-381 (602)
38 3h4z_A Maltose-binding peripla 99.7 2.7E-16 9.4E-21 159.1 16.2 234 16-280 100-393 (568)
39 1mh3_A Maltose binding-A1 home 99.7 2.9E-16 9.8E-21 151.1 15.6 151 16-183 100-301 (421)
40 4g68_A ABC transporter; transp 99.7 1.6E-16 5.5E-21 155.0 13.1 151 12-176 164-377 (456)
41 4hw8_A Bacterial extracellular 99.7 3.2E-16 1.1E-20 150.8 14.9 152 16-184 138-342 (420)
42 3o3u_N Maltose-binding peripla 99.7 5.2E-16 1.8E-20 154.5 16.8 240 12-295 98-390 (581)
43 2b3f_A Glucose-binding protein 99.7 3.5E-16 1.2E-20 149.8 14.4 155 16-183 108-316 (400)
44 2xz3_A Maltose ABC transporter 99.7 4.4E-16 1.5E-20 153.4 15.3 236 16-282 101-404 (463)
45 3oai_A Maltose-binding peripla 99.7 1E-15 3.5E-20 150.2 17.3 202 16-248 100-354 (507)
46 4dxb_A RG13, maltose-binding p 99.7 1.7E-16 5.8E-21 162.5 12.1 155 12-185 98-303 (637)
47 2vgq_A Maltose-binding peripla 99.7 1.9E-15 6.5E-20 149.0 18.7 151 16-183 115-316 (477)
48 1y4c_A Maltose binding protein 99.7 5.2E-16 1.8E-20 154.8 14.4 152 16-184 100-302 (494)
49 1hsj_A Fusion protein consisti 99.7 8.5E-16 2.9E-20 151.3 15.7 151 16-183 100-301 (487)
50 1r6z_P Chimera of maltose-bind 99.7 1.1E-15 3.9E-20 151.8 16.7 151 16-183 101-302 (509)
51 2xd3_A MALX, maltose/maltodext 99.7 1.4E-15 4.8E-20 146.3 16.2 152 16-184 130-339 (416)
52 2gh9_A Maltose/maltodextrin-bi 99.7 4.5E-15 1.5E-19 141.2 18.8 152 16-185 102-308 (386)
53 3h3g_A Fusion protein of malto 99.6 2.1E-15 7E-20 151.2 17.0 155 12-185 100-305 (539)
54 4exk_A Maltose-binding peripla 99.6 5.2E-15 1.8E-19 147.0 18.4 152 11-181 101-303 (487)
55 3f5f_A Maltose-binding peripla 99.6 3.4E-15 1.2E-19 153.2 17.5 202 16-248 100-354 (658)
56 3csg_A MBP, maltose-binding pr 99.6 3.5E-15 1.2E-19 146.0 16.7 151 16-183 98-299 (461)
57 3mp6_A MBP, SGF29, maltose-bin 99.6 3.2E-15 1.1E-19 149.3 16.6 204 12-248 99-355 (522)
58 2zxt_A Maltose-binding peripla 99.6 1.4E-15 4.7E-20 149.9 13.0 153 12-183 98-301 (465)
59 4aq4_A SN-glycerol-3-phosphate 99.6 1.3E-14 4.5E-19 138.0 18.7 156 16-184 114-330 (419)
60 3osr_A Maltose-binding peripla 99.6 4.3E-15 1.5E-19 153.0 13.8 154 16-186 136-340 (653)
61 1urs_A Maltose-binding protein 99.6 4.1E-15 1.4E-19 142.2 12.7 149 16-183 130-326 (402)
62 2heu_A Sugar ABC transporter, 99.6 4.4E-15 1.5E-19 142.1 12.8 156 16-184 116-333 (401)
63 2z8f_A Galacto-N-biose/lacto-N 99.6 1.3E-14 4.6E-19 139.2 15.3 148 12-173 117-320 (412)
64 2uvj_A TOGB, ABC type periplas 99.6 2.1E-14 7E-19 137.4 15.9 150 12-175 106-318 (408)
65 1eu8_A Trehalose/maltose bindi 99.6 5.5E-14 1.9E-18 134.4 16.7 158 12-185 109-333 (409)
66 3dm0_A Maltose-binding peripla 99.6 2.3E-14 7.7E-19 145.8 14.7 148 11-176 97-295 (694)
67 3osq_A Maltose-binding peripla 99.6 4.6E-14 1.6E-18 145.4 16.4 133 89-248 494-636 (661)
68 2w7y_A FCSSBP, probable sugar 99.6 5.1E-15 1.7E-19 142.8 8.7 154 16-183 146-349 (430)
69 3cg1_A UPF0100 protein PF0080; 99.5 2.4E-14 8.2E-19 132.0 11.8 143 20-176 83-290 (296)
70 2nvu_B Maltose binding protein 99.5 2.5E-14 8.7E-19 150.1 12.9 145 16-176 104-299 (805)
71 3thi_A Protein (thiaminase I); 99.5 5.2E-14 1.8E-18 132.5 11.3 147 12-175 92-295 (371)
72 1sbp_A Sulfate-binding protein 99.5 1E-13 3.5E-18 127.3 10.8 142 21-185 90-264 (310)
73 4gqo_A LMO0859 protein; virule 99.4 1.5E-13 5.1E-18 132.0 9.3 154 16-182 136-353 (433)
74 3a09_A ALGQ1; sugar binding pr 99.4 2.5E-12 8.6E-17 125.0 12.7 149 15-175 120-346 (490)
75 3omb_A Extracellular solute-bi 99.4 9.2E-13 3.2E-17 131.0 9.4 148 15-175 145-383 (535)
76 3cfx_A UPF0100 protein MA_0280 99.3 2E-11 6.8E-16 112.8 15.0 137 20-176 78-290 (296)
77 3cij_A UPF0100 protein AF_0094 99.3 2.3E-11 7.7E-16 112.2 14.9 137 20-176 78-289 (295)
78 3r26_A Molybdate-binding perip 99.2 1E-10 3.6E-15 104.9 14.0 138 21-176 81-231 (237)
79 3vlv_A ALGQ1; sugar binding pr 99.2 1.3E-10 4.4E-15 114.9 13.6 149 15-175 120-346 (502)
80 3cfz_A UPF0100 protein MJ1186; 99.1 1.3E-09 4.5E-14 100.3 13.2 135 20-176 78-286 (292)
81 1atg_A MODA, periplasmic molyb 99.0 1.4E-09 4.7E-14 93.9 10.8 142 21-184 74-230 (231)
82 2hxw_A Major antigenic peptide 99.0 1.2E-09 4E-14 96.4 10.3 132 21-176 75-226 (237)
83 3gzg_A Molybdate-binding perip 99.0 4.7E-09 1.6E-13 95.6 12.5 134 21-176 97-247 (253)
84 3k6v_A Solute-binding protein 98.4 4.8E-06 1.6E-10 79.6 13.8 140 21-182 117-332 (354)
85 4gd5_A Phosphate ABC transport 96.1 0.14 4.7E-06 46.0 14.6 141 19-181 104-275 (279)
86 3muq_A Uncharacterized conserv 94.1 0.097 3.3E-06 46.9 6.8 61 106-175 172-233 (237)
87 3lr1_A Tungstate ABC transport 88.5 1.2 4E-05 39.8 7.5 61 107-175 173-234 (236)
88 4ecf_A ABC-type phosphate tran 87.9 5.6 0.00019 35.2 11.8 140 18-182 72-243 (264)
89 4exl_A PBP 1, phosphate-bindin 87.5 9.1 0.00031 33.9 12.9 140 18-182 72-243 (265)
90 3kn3_A Putative periplasmic pr 86.8 1.9 6.5E-05 38.6 7.8 21 155-175 218-238 (242)
91 4i62_A Amino acid ABC transpor 85.2 11 0.00038 31.8 11.8 105 19-139 120-234 (269)
92 3kbr_A Cyclohexadienyl dehydra 84.3 13 0.00045 30.8 11.7 106 18-138 92-207 (239)
93 1ii5_A SLR1257 protein; membra 80.7 22 0.00074 29.0 13.2 129 18-175 85-222 (233)
94 3g3k_A Glutamate receptor, ion 79.3 27 0.00093 29.4 12.3 113 19-141 101-226 (259)
95 4f3p_A Glutamine-binding perip 78.1 28 0.00096 29.1 11.7 131 19-180 101-242 (249)
96 3del_B Arginine binding protei 77.9 28 0.00096 28.7 12.5 105 19-144 89-205 (242)
97 3k4u_A Binding component of AB 77.2 30 0.001 28.7 11.7 106 18-139 82-198 (245)
98 4h1x_A PBP 2, phosphate-bindin 77.2 3.2 0.00011 37.4 5.5 73 89-182 56-140 (265)
99 4h5g_A Amino acid ABC superfam 76.8 26 0.0009 29.5 11.2 105 20-140 94-208 (243)
100 2pyy_A Ionotropic glutamate re 76.6 24 0.00082 28.6 10.6 130 19-175 80-218 (228)
101 3qax_A Probable ABC transporte 75.4 35 0.0012 28.5 12.4 104 18-139 108-223 (268)
102 3mpk_A Virulence sensor protei 73.2 43 0.0015 28.5 13.7 105 18-139 109-223 (267)
103 1twy_A ABC transporter, peripl 73.0 15 0.00051 31.3 8.7 143 18-183 94-275 (290)
104 2yjp_A Putative ABC transporte 72.1 48 0.0016 28.7 12.4 102 19-139 136-246 (291)
105 3kzg_A Arginine 3RD transport 69.4 34 0.0012 28.2 9.9 102 18-139 81-200 (237)
106 1pc3_A Phosphate-binding prote 67.3 76 0.0026 29.1 12.7 34 19-52 96-140 (350)
107 4got_A Methionine-binding lipo 66.1 14 0.00048 33.1 7.0 77 88-178 161-240 (249)
108 3h7m_A Sensor protein; histidi 64.6 55 0.0019 26.5 13.8 106 19-139 88-200 (234)
109 2yln_A Putative ABC transporte 64.4 60 0.0021 28.0 10.9 104 20-139 137-247 (283)
110 1xt8_A Putative amino-acid tra 64.2 64 0.0022 27.7 11.0 102 19-139 125-235 (292)
111 3ksx_A Nitrate transport prote 62.8 71 0.0024 28.1 11.3 67 88-167 168-237 (324)
112 3cvg_A Putative metal binding 62.8 8.8 0.0003 34.3 5.1 37 128-176 233-270 (294)
113 3hv1_A Polar amino acid ABC up 60.6 75 0.0026 26.7 10.7 107 18-139 98-218 (268)
114 3qsl_A Putative exported prote 58.7 93 0.0032 27.2 11.3 67 88-167 177-255 (346)
115 2x26_A Periplasmic aliphatic s 57.4 94 0.0032 26.9 11.0 67 88-167 142-211 (308)
116 3ix1_A N-formyl-4-amino-5-amin 56.7 65 0.0022 28.0 9.8 118 23-167 82-216 (302)
117 2a5s_A N-methyl-D-aspartate re 56.3 98 0.0033 26.7 11.9 115 19-142 124-253 (284)
118 2rc8_A Glutamate [NMDA] recept 55.5 1E+02 0.0035 26.7 12.7 116 19-141 135-261 (294)
119 1yae_A Glutamate receptor, ion 51.1 1.2E+02 0.0042 26.3 15.5 134 19-168 110-275 (312)
120 2vha_A Periplasmic binding tra 49.8 1.2E+02 0.0041 25.7 15.3 107 18-139 101-218 (287)
121 4dz1_A DALS D-alanine transpor 49.7 1.1E+02 0.0039 25.5 12.2 107 19-140 107-226 (259)
122 3gxa_A Outer membrane lipoprot 49.6 62 0.0021 29.3 8.4 75 88-178 178-252 (275)
123 2y7i_A STM4351; arginine-bindi 48.7 1E+02 0.0035 24.7 10.2 88 18-121 83-176 (229)
124 3i6v_A Periplasmic His/Glu/Gln 46.9 1.2E+02 0.0041 24.9 10.9 98 18-139 82-187 (232)
125 4ef1_A Pheromone COB1/lipoprot 46.3 15 0.00051 32.8 3.6 77 87-178 158-237 (246)
126 2q88_A EHUB, putative ABC tran 44.7 1.3E+02 0.0044 24.8 9.4 112 18-139 90-210 (257)
127 2f5x_A BUGD; periplasmic bindi 43.7 1.8E+02 0.0063 26.2 13.4 151 9-176 92-274 (312)
128 4eq9_A ABC transporter substra 42.4 1.4E+02 0.0046 24.3 11.7 108 19-140 86-206 (246)
129 3c5t_B Exendin-4, exenatide; l 42.2 13 0.00044 22.6 1.7 12 157-168 10-21 (31)
130 1wdn_A GLNBP, glutamine bindin 41.7 1.3E+02 0.0045 23.9 10.6 103 19-139 80-192 (226)
131 2pvu_A ARTJ; basic amino acid 41.5 1.6E+02 0.0054 24.7 12.9 135 19-180 119-262 (272)
132 3tql_A Arginine-binding protei 41.0 1.3E+02 0.0046 23.8 9.9 110 19-144 80-201 (227)
133 3fap_B FRAP, FKBP12-rapamycin 41.0 36 0.0012 25.8 4.5 55 254-308 13-71 (94)
134 2iee_A ORF2, probable ABC tran 39.2 1.7E+02 0.0059 24.5 10.2 103 19-139 102-216 (271)
135 1pb7_A N-methyl-D-aspartate re 34.1 2.3E+02 0.0078 24.4 12.5 118 19-144 136-262 (292)
136 1t5q_A Gastric inhibitory poly 33.9 19 0.00064 21.7 1.5 11 157-167 18-28 (30)
137 2l63_A GLP-2, glucagon-like pe 33.9 21 0.0007 22.0 1.7 12 157-168 18-29 (33)
138 2dvz_A BUGE, putative exported 32.2 2.8E+02 0.0096 24.9 14.8 151 9-176 96-278 (314)
139 2qpq_A Protein BUG27; alpha/be 31.8 2.8E+02 0.0094 24.7 15.0 151 9-176 83-265 (301)
140 2g49_C Glucagon preproprotein; 31.4 23 0.00078 21.1 1.6 11 157-167 18-28 (29)
141 1jrj_A Exendin-4; Trp-CAGE, GL 30.1 25 0.00087 22.4 1.7 12 157-168 18-29 (39)
142 2npu_A FKBP12-rapamycin comple 28.7 69 0.0024 25.6 4.6 55 254-308 43-101 (126)
143 2b4n_A Gastric inhibitory poly 26.9 26 0.00088 22.7 1.4 13 156-168 17-29 (42)
144 1xs5_A 29 kDa protein, membran 26.3 96 0.0033 27.0 5.6 73 88-177 156-231 (241)
145 3iol_B Glucagon; receptor-liga 25.3 39 0.0013 20.3 1.9 12 156-167 17-28 (31)
146 2v25_A Major cell-binding fact 25.2 2.7E+02 0.0093 22.5 8.6 104 20-140 121-232 (259)
147 3uif_A Sulfonate ABC transport 21.8 3.8E+02 0.013 23.5 9.0 119 19-167 91-227 (348)
148 1r9l_A Glycine betaine-binding 20.7 87 0.003 28.1 4.2 89 27-121 92-205 (309)
No 1
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=100.00 E-value=4.9e-36 Score=281.77 Aligned_cols=217 Identities=24% Similarity=0.347 Sum_probs=187.8
Q ss_pred cccccCCCCcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH---------
Q 036082 4 YLRRNDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI--------- 74 (315)
Q Consensus 4 ~~~~~~~~~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a--------- 74 (315)
+.+.+....+|+ |+.|++||.+++++|+||++++++ .+|+||+||++|+++|++.+.+...+.++++
T Consensus 93 ~~~~~~~~~~~~-~~~y~vp~~~~~~~i~yn~~~~~~---~~~~sw~dl~dp~~kg~~~~~~~~~~~~~~a~~~~~~~~~ 168 (333)
T 4gl0_A 93 LDPRFMDLSFDD-DNKYSMPYFWGTLGIIYNKEMFPD---KNFDTWNALFDPELKNQILLIDGAREVMGLGLNSLGYSLN 168 (333)
T ss_dssp BCGGGSSCGGGG-GGSSEEEEEEEEEEEEEETTTCTT---CCTTSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTT
T ss_pred CCHHHhhhccCC-CCceEeceeeeeeeeeechhhccc---CCcccHHhhcCHHhhhccccCCcHHHHHHHHHHHHhhccc
Confidence 345556666776 778999999999999999999986 3789999999999999999999988887765
Q ss_pred -----HHHHHHHHHHhh--------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCC
Q 036082 75 -----AVQLNLALLANQ--------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAAS 140 (315)
Q Consensus 75 -----~~~~a~~~L~~~--------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s 140 (315)
++.++...+.++ +.+..+.|++|+++|+++|+++...+...++++.+ +|++|+.+|+++++|+|+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~p~eG~~~~~~~~~I~k~a 248 (333)
T 4gl0_A 169 DTNKAHLQAARDKLETMTPNVKAIVGDEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDNMVIPKTA 248 (333)
T ss_dssp CCCHHHHHHHHHHHHHHGGGEEEEESTTHHHHTSCC-CCEEEEEHHHHHHHHHHCTTEEEECCSSCEEEEEEEEECBTTC
T ss_pred CCCHHHHHHHHHHHHhhccccceecchhhhhhhhccchheehhhhHHHHHHHhhccccccccCCCCCccccceEEEEcCC
Confidence 234444554443 45678899999999999999999999999999999 9999999999999999999
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCCCCcccccCCCcHHHhh
Q 036082 141 RLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILA 220 (315)
Q Consensus 141 ~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~~~~~~p~~~~~~ 220 (315)
+|++ +|++|||||+|||+|+.+++ .++|.+|+ ..+...||+++++++ .++|+.+.+.
T Consensus 249 ~n~e------------~A~~fi~fllspe~q~~~~~-~~gy~~~n--~~a~~~l~~~~~~~~--------~~~p~~~~~~ 305 (333)
T 4gl0_A 249 KNVD------------GAHKFINFMLKPENAAINAE-YVGYATPN--AKAVELLPKEISSDE--------RFYPDMDELN 305 (333)
T ss_dssp SCHH------------HHHHHHHHHHSHHHHHHHHH-HHCCBCCB--HHHHHHSCHHHHTCT--------TTSCCGGGGT
T ss_pred CCHH------------HHHHHHHHhcCHHHHHHHHH-HhCCCCcc--HHHHHhCCHHHHhCc--------ccCCCHHHHh
Confidence 9998 99999999999999999995 67888877 467778999998754 3688999999
Q ss_pred ccccccCCCHHHHHHHHHHHHHhcccCC
Q 036082 221 RFEFLEPLSEATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 221 ~~~~~~~l~~~~~~~~~~~~W~~ikag~ 248 (315)
+++++.+++++..+.|++ +|++||.++
T Consensus 306 ~~~~~~~~~~~~~~~~~~-~w~~~K~~r 332 (333)
T 4gl0_A 306 NLEVYDNLGKRMLSYYNE-LFLEFKMYR 332 (333)
T ss_dssp TEECCCCCCHHHHHHHHH-HHHHHHHHC
T ss_pred hCeehhcCCHHHHHHHHH-HHHHHHhhC
Confidence 999999999999999999 999999865
No 2
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=100.00 E-value=2.5e-33 Score=262.33 Aligned_cols=216 Identities=23% Similarity=0.336 Sum_probs=189.0
Q ss_pred cccccCCCCcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH---------
Q 036082 4 YLRRNDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI--------- 74 (315)
Q Consensus 4 ~~~~~~~~~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a--------- 74 (315)
+.+.+....+|+ |+.|||||.+++.+|+||+++|++ +|+||++|++++++|++++.+...+.++++
T Consensus 91 ~~~~~~~~~~~~-g~~y~vP~~~~~~~l~Ynkd~~~~----~p~tw~el~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~ 165 (330)
T 4eqb_A 91 IGPEFLNQSFDP-GNKFSIPYFWGTLGIVYNETMVDE----APEHWDDLWKLEYKNSIMLFDGAREVLGLGLNSLGYSLN 165 (330)
T ss_dssp BCGGGSSCTTSG-GGSSCEEEEEEEEEEEEEGGGCSS----CCCSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHccCcCC-CCeEEEEEecccEEEEEEHHHcCC----CCCCHHHHhChHhcCCeEEecCHHHHHHHHHHHcCCCCC
Confidence 445555666665 789999999999999999999975 899999999999999999999888777665
Q ss_pred -----HHHHHHHHHHhh--------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCC
Q 036082 75 -----AVQLNLALLANQ--------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAAS 140 (315)
Q Consensus 75 -----~~~~a~~~L~~~--------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s 140 (315)
++.++++.|.++ +.+..+.|.+|+++|++.|++.+..+...++++++ +|++|..+|.++++|++++
T Consensus 166 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s 245 (330)
T 4eqb_A 166 SKDPQQLEETVDKLYKLTPNIKAIVADEMKGYMIQNNVAIGVTFSGEASQMLEKNENLRYVVPTEASNLWFDNMVIPKTV 245 (330)
T ss_dssp CCCHHHHHHHHHHHHTTGGGEEEEESTTHHHHHHTTCCSEEEEEHHHHHHHHHHCTTEEEECCTTCEEEEEEEEBCBTTC
T ss_pred CCCHHHHHHHHHHHHHHhhHhheeCcHHHHHHHhcCCEEEEEechHHHHHHHhhCCCeEEEeCCCccceEEEEEEEECCC
Confidence 246777777765 44678999999999999999999999888999999 9999999999999999999
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCCCCcccccCCCcHHHhh
Q 036082 141 RLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILA 220 (315)
Q Consensus 141 ~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~~~~~~p~~~~~~ 220 (315)
+|++ +|++||+||++||+|..+++ ..+|.+|+ ..+...+++++++++ .++|+.+.+.
T Consensus 246 ~~~~------------~A~~fi~~l~s~e~~~~~~~-~~g~~p~~--~~a~~~l~~~~~~~~--------~~~p~~~~~~ 302 (330)
T 4eqb_A 246 KNQD------------SAYAFINFMLKPENALQNAE-YVGYSTPN--LPAKELLPEETKEDK--------AFYPDVETMK 302 (330)
T ss_dssp SCHH------------HHHHHHHHHHSHHHHHHHHH-HHCCBCSB--HHHHHTSCHHHHTCT--------TTSCCHHHHH
T ss_pred CCHH------------HHHHHHHHhcCHHHHHHHHH-hhCCCChh--HHHHHhCCHHHhhCc--------ccCCCHHHHh
Confidence 9998 99999999999999999995 56887776 466678999998754 3689999999
Q ss_pred ccccccCCCHHHHHHHHHHHHHhcccCC
Q 036082 221 RFEFLEPLSEATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 221 ~~~~~~~l~~~~~~~~~~~~W~~ikag~ 248 (315)
+++++++++++..+.|++ +|++||+|.
T Consensus 303 ~~~~~~~~~~~~~~~~~~-~w~~~k~~~ 329 (330)
T 4eqb_A 303 HLEVYEKFDHKWTGKYSD-LFLQFKMYR 329 (330)
T ss_dssp TEECCCCCCHHHHHHHHH-HHHHHHHHT
T ss_pred hceEecCCCHHHHHHHHH-HHHHHHhcC
Confidence 999999999888999999 999999874
No 3
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A
Probab=100.00 E-value=1.5e-32 Score=257.94 Aligned_cols=210 Identities=22% Similarity=0.405 Sum_probs=179.9
Q ss_pred cCCCCCeEeeeeeeceEEEEEecccccc-cCCC-CCCChHhhcCcccCCc-----eEeecChHHHhhHH-----------
Q 036082 13 IDPRGKICAAPYRWGTVVIAYKKSKFRK-HNLA-PIEDWKDLWRPELAGR-----ISMVNSPREVIGSI----------- 74 (315)
Q Consensus 13 ~DpdG~~Y~vP~~~g~~gi~YN~d~~~~-~Gl~-~P~SW~dL~dp~~~Gk-----i~~~d~~~~~~g~a----------- 74 (315)
+++ |+.|+||+.+++.+|+||+++|++ +|++ +|+||+||++++++|+ +++.+++..+++++
T Consensus 101 ~~~-g~~y~vP~~~~~~~l~Ynkd~~~~~~G~~~~p~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 179 (346)
T 3ttm_A 101 SDP-GNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTD 179 (346)
T ss_dssp TSG-GGCSEEEEEEEEEEEEECHHHHHHHHCTTCCTTSTHHHHSHHHHHHHTTTCEEECSCHHHHHHHHHHHTTSCTTCC
T ss_pred CCC-CCeEEeEEeeccEEEEEEhHHhhhhccCCCCCCcHHHHhChhhhccccCCcEEEECCHHHHHHHHHHHcCCCCCCC
Confidence 444 889999999999999999999999 8987 8999999999977655 67778777766554
Q ss_pred ---HHHHHHHHHHhh--------cHHHHHHHHcCCEEEEEEehhhHHHHHH------cCCCeEE-EeCCCceeeeeeEEE
Q 036082 75 ---AVQLNLALLANQ--------SAHHLKAFGIGDVWVAVGWSSDVLPAVK------HMSNVAV-VPKSGASLWADLWAI 136 (315)
Q Consensus 75 ---~~~~a~~~L~~~--------~~~~~~~~~~Gev~~~~~ws~~~~~~~~------~~~~i~~-~PkeG~~~~~d~~~I 136 (315)
++.++++.|.++ +++..+.|.+|+++|++.|++++..... .+.++.+ +|++|+.+|.++++|
T Consensus 180 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~I 259 (346)
T 3ttm_A 180 NPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAI 259 (346)
T ss_dssp CHHHHHHHHHHHHHHGGGCCEECSSTHHHHHHHTSCSEEEEEHHHHHHHHHHHHHHTSSCCCEEECCTTCEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhHhhheeCChhHHHHHhcCCeEEEEeccHHHHHHHHhhhhcccCCceEEEEcCCCceEEEEEEEE
Confidence 346677777655 3467899999999999999999887754 3678999 999999999999999
Q ss_pred eCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCCCCcccccCCCcH
Q 036082 137 PAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPA 216 (315)
Q Consensus 137 ~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~~~~~~p~~ 216 (315)
+++++|++ +|++||+|+++||+|..+++ ..+|.+|+ +.+...+++++++++ .++|+.
T Consensus 260 ~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~-~~g~~p~~--~~a~~~~~~~~~~~~--------~~~~~~ 316 (346)
T 3ttm_A 260 PKDAENTE------------GALAFVNFLMKPEIMAEITD-VVQFPNGN--AAATPLVSEAIRNDP--------GIYPSE 316 (346)
T ss_dssp BTTCSCSH------------HHHHHHHHHTSHHHHHHHHH-HHCCCBSB--TTTGGGSCHHHHTCT--------TTSCCH
T ss_pred ECCCCCHH------------HHHHHHHHhcCHHHHHHHHH-hhCCCCcc--HHHHhhCCHHHhhCC--------CcCCCH
Confidence 99999998 99999999999999999995 56776666 466778999998754 368899
Q ss_pred HHhhccccccCCCHHHHHHHHHHHHHhcccC
Q 036082 217 EILARFEFLEPLSEATLSDMSGWEIGSGQLG 247 (315)
Q Consensus 217 ~~~~~~~~~~~l~~~~~~~~~~~~W~~ikag 247 (315)
+.+.+++++.++++...+.+++ +|++|++|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~g 346 (346)
T 3ttm_A 317 EVMKKLYTFPDLPAKTQRAMTR-SWTKIKSG 346 (346)
T ss_dssp HHHTTEEECCCCCHHHHHHHHH-HHHHHHCC
T ss_pred HHHhhCeeecCCCHHHHHHHHH-HHHHHhcC
Confidence 9999999999999988999999 99999987
No 4
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Probab=99.97 E-value=3.6e-31 Score=247.28 Aligned_cols=205 Identities=23% Similarity=0.394 Sum_probs=175.7
Q ss_pred CCeEeeeeeeceEEEEEecccccc-cCCCCCCChHhhcCcccCCc-----eEeecChHHHhhHH--------------HH
Q 036082 17 GKICAAPYRWGTVVIAYKKSKFRK-HNLAPIEDWKDLWRPELAGR-----ISMVNSPREVIGSI--------------AV 76 (315)
Q Consensus 17 G~~Y~vP~~~g~~gi~YN~d~~~~-~Gl~~P~SW~dL~dp~~~Gk-----i~~~d~~~~~~g~a--------------~~ 76 (315)
|+.|+||+.+++.+|+||++++++ +|+++|+||+||++++++|+ +.+.+++...++++ ++
T Consensus 101 g~~y~vP~~~~~~~l~Ynkd~~~~a~G~~~P~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 180 (340)
T 3ttn_A 101 GNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDY 180 (340)
T ss_dssp GGCSEEEEEEEEEEEEEEHHHHHHHHCSCCCCSTHHHHCHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSCTTCCCHHHH
T ss_pred CCeEEeEEEeeeeEEEEehHHhccccCCCCCccHHHHhChhhhccccCCeEEEECCHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 889999999999999999999999 69999999999999977665 57777777666554 24
Q ss_pred HHHHHHHHhh--------cHHHHHHHHcCCEEEEEEehhhHHHHHH------cCCCeEE-EeCCCceeeeeeEEEeCCCC
Q 036082 77 QLNLALLANQ--------SAHHLKAFGIGDVWVAVGWSSDVLPAVK------HMSNVAV-VPKSGASLWADLWAIPAASR 141 (315)
Q Consensus 77 ~~a~~~L~~~--------~~~~~~~~~~Gev~~~~~ws~~~~~~~~------~~~~i~~-~PkeG~~~~~d~~~I~k~s~ 141 (315)
+++++.|.++ +++..+.|.+|+++|++.|++++..... .+.++.+ +|++|..+|.++++|+++++
T Consensus 181 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~ 260 (340)
T 3ttn_A 181 KKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAK 260 (340)
T ss_dssp HHHHHHHHHHGGGCCEECSSHHHHHHHHTSCSEEEEEHHHHHHHHHHHHHHTSCCCEEEECCTTCCEEEEEEEECBTTCS
T ss_pred HHHHHHHHHHhHHhheeCCchHHHHHhcCCeEEEEeccHHHHHHHHhhhhccCCCceEEEeCCCccceeEEEEEEECCCC
Confidence 6677777654 3477899999999999999999887653 3678999 99999999999999999999
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCCCCcccccCCCcHHHhhc
Q 036082 142 LETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILAR 221 (315)
Q Consensus 142 ~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~~~~~~p~~~~~~~ 221 (315)
|++ +|++||+||+|||+|..+++ ..+|.+|+ ..+...+++++++++ .++|+.+.+.+
T Consensus 261 ~~~------------~A~~fi~~l~s~e~q~~~~~-~~g~~p~~--~~a~~~~~~~~~~~~--------~~~~~~~~~~~ 317 (340)
T 3ttn_A 261 AAD------------NAYAFIDYLLRPEVIAKVSD-YVGYANAI--PGARPLMDKSVSDSE--------EVYPPQAVLDK 317 (340)
T ss_dssp CHH------------HHHHHHHHHTSHHHHHHHHH-HHCCEESC--GGGGGGSCHHHHTBT--------TTSCCHHHHTT
T ss_pred CHH------------HHHHHHHHhcCHHHHHHHHH-hcCCCCcc--HHHHhhCCHHHHhCC--------CCCCCHHHHhh
Confidence 998 99999999999999999995 56776665 467778999988754 36889999999
Q ss_pred cccccCCCHHHHHHHHHHHHHhcc
Q 036082 222 FEFLEPLSEATLSDMSGWEIGSGQ 245 (315)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~W~~ik 245 (315)
+.++++++++..+.+++ +|++||
T Consensus 318 ~~~~~~~~~~~~~~~~~-~w~~~k 340 (340)
T 3ttn_A 318 LYVSAVLPAKVLRLQTR-TWTRIK 340 (340)
T ss_dssp CEECCCCCHHHHHHHHH-HHHHHC
T ss_pred cccccCCCHHHHHHHHH-HHHhcC
Confidence 99999999988999999 999986
No 5
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=99.97 E-value=2.3e-29 Score=234.66 Aligned_cols=212 Identities=23% Similarity=0.364 Sum_probs=174.9
Q ss_pred cCCCCcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH-------------
Q 036082 8 NDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI------------- 74 (315)
Q Consensus 8 ~~~~~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a------------- 74 (315)
+.....++ |+.|+||+.+++.+|+||+++++++ +|+||+||++++++|++++.++..+.++.+
T Consensus 91 ~~~~~~~~-g~~y~vP~~~~~~~l~Ynkd~~~~~---p~~tw~dl~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~ 166 (325)
T 1pot_A 91 MLNKPFDP-NNDYSIPYIWGATAIGVNGDAVDPK---SVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDP 166 (325)
T ss_dssp GSCCTTST-TCSSCEEEEEEEEEEEEETTTSCTT---TCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCCH
T ss_pred HhccCCCC-CCcEEeeEeeeeEEEEEEHHHcCCC---CCCCHHHHcCHHhcCcEEEEcCHHHHHHHHHHHcCCCCCCCCH
Confidence 33333343 8999999999999999999999873 679999999999999999988776655443
Q ss_pred -HHHHHHHHHHhh--------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcc
Q 036082 75 -AVQLNLALLANQ--------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLET 144 (315)
Q Consensus 75 -~~~~a~~~L~~~--------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~ 144 (315)
...++++.|.++ +.+..+.|.+|+++|++.|++.+......+.++++ +|++|..++.++++|+++++|++
T Consensus 167 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~ 246 (325)
T 1pot_A 167 KEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKE 246 (325)
T ss_dssp HHHHHHHHHHHHTGGGEEEECSSCTHHHHHTTSCSEEEEEHHHHHHHHTTSCCEEEECCTTCCEEEEEEEBCBTTCTTHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCchHhHHHhcCCEEEEEeecHHHHHHhhcCCCeEEEECCCcceEEEEEEEEECCCCCHH
Confidence 245677777665 23567889999999999999998877777788999 99999999999999999999998
Q ss_pred cccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCCCCcccccCCCcHHHhhcccc
Q 036082 145 KQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFEF 224 (315)
Q Consensus 145 ~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~~~~~~p~~~~~~~~~~ 224 (315)
+|++||+|+++||+|..+++ ..++.+|+ ..+...+++++++++ .++|+.+.+.++.+
T Consensus 247 ------------~A~~fi~~l~s~e~q~~~~~-~~g~~p~~--~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~ 303 (325)
T 1pot_A 247 ------------GALKLINFLLRPDVAKQVAE-TIGYPTPN--LAARKLLSPEVANDK--------TLYPDAETIKNGEW 303 (325)
T ss_dssp ------------HHHHHHHHHHSHHHHHHHHH-HHCCCCSB--STTTTTSCHHHHTCT--------TTSCCHHHHHHSEE
T ss_pred ------------HHHHHHHHHhCHHHHHHHHH-hhCCCCcc--HHHHHhcCHHHHhCc--------ccCCCHHHHhhccc
Confidence 99999999999999999985 56776665 456668899887643 24788899999999
Q ss_pred ccCCCHHHHHHHHHHHHHhcccCC
Q 036082 225 LEPLSEATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 225 ~~~l~~~~~~~~~~~~W~~ikag~ 248 (315)
+.++++. .+.+.+ +|++|++|.
T Consensus 304 ~~~~~~~-~~~~~~-~w~~~~~~~ 325 (325)
T 1pot_A 304 QNDVGAA-SSIYEE-YYQKLKAGR 325 (325)
T ss_dssp CCCCGGG-HHHHHH-HHHHHTTC-
T ss_pred ccCCCHH-HHHHHH-HHHHHhccC
Confidence 9888776 788999 999999863
No 6
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1
Probab=99.94 E-value=7.2e-27 Score=219.04 Aligned_cols=209 Identities=22% Similarity=0.393 Sum_probs=167.3
Q ss_pred CCCeEeeeeeeceEEEEEeccccccc-CCC-CCCChHhhcCcccCCceE-----eecChHHHhhHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKH-NLA-PIEDWKDLWRPELAGRIS-----MVNSPREVIGSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~-Gl~-~P~SW~dL~dp~~~Gki~-----~~d~~~~~~g~a-------------- 74 (315)
+|++||||+.+++.+|+||+++++++ |++ +|+||+||+++++++++. +.+.+.+.++..
T Consensus 99 ~g~~y~vP~~~~~~~l~Ynkd~~~~alGl~~~p~tw~el~~~~~~~k~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 178 (344)
T 1a99_A 99 PDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKAD 178 (344)
T ss_dssp GGGCSEEEEEEEEEEEEEEHHHHHHHHCTTCCTTSTHHHHSHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSCTTCCCHH
T ss_pred CCCcEEeeEEeeeEEEEEEhHHcccccccCCCCCCHHHHcCHHhcCCcccccccccCCHHHHHHHHHHHcCCCCCCCCHH
Confidence 38999999999999999999999997 987 699999999986666543 455555544332
Q ss_pred HHH-HHHHHHHhh--------cHHHHHHHHcCCEEEEEEehhhHHHHHH------cCCCeEE-EeCCCceeeeeeEEEeC
Q 036082 75 AVQ-LNLALLANQ--------SAHHLKAFGIGDVWVAVGWSSDVLPAVK------HMSNVAV-VPKSGASLWADLWAIPA 138 (315)
Q Consensus 75 ~~~-~a~~~L~~~--------~~~~~~~~~~Gev~~~~~ws~~~~~~~~------~~~~i~~-~PkeG~~~~~d~~~I~k 138 (315)
.+. ++++.|.++ +.+..+.|.+|+++|++.|++.+..... .+.++++ +|++|..++.++++|++
T Consensus 179 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~ 258 (344)
T 1a99_A 179 DYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPA 258 (344)
T ss_dssp HHHTHHHHHHHHHGGGCCEECSSTHHHHHHTTSCSEEEEEHHHHHHHHHHHHHHTCSCCEEEECCTTCEEEEEEEEECBT
T ss_pred HHHHHHHHHHHHhccceeEecChhHHHHhhcCCEEEEEEccHHHHHHHHhccccCCCCceEEEECCCCceeEEEeeEEEC
Confidence 235 677777654 2356788999999999999988776654 3558999 99999999999999999
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCCCCcccccCCCcHHH
Q 036082 139 ASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEI 218 (315)
Q Consensus 139 ~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~~~~~~p~~~~ 218 (315)
+++|++ +|++||+|++|||+|..+++ ..++.+++ +.+...+++++++++ .++|..+.
T Consensus 259 ~s~~~~------------~A~~fi~~l~s~e~q~~~~~-~~g~~p~~--~~~~~~~~~~~~~~p--------~~~~~~~~ 315 (344)
T 1a99_A 259 DAKNKD------------EAYQFLNYLLRPDVVAHISD-HVFYANAN--KAATPLVSAEVRENP--------GIYPPADV 315 (344)
T ss_dssp TCSCHH------------HHHHHHHHHHSHHHHHHHHH-HHCCEESB--TTTGGGSCHHHHTCT--------TTSCCHHH
T ss_pred CCCCHH------------HHHHHHHHHcCHHHHHHHHH-hhCCCCcc--hHHHhhCCHHHhhCc--------cCCCCHHH
Confidence 999998 99999999999999999985 55765554 345556888887643 24667888
Q ss_pred hhccccccCCCHHHHHHHHHHHHHhcccCC
Q 036082 219 LARFEFLEPLSEATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 219 ~~~~~~~~~l~~~~~~~~~~~~W~~ikag~ 248 (315)
+.++.+.++++++....+.+ +|+++++|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 344 (344)
T 1a99_A 316 RAKLFTLKVQDPKIDRVRTR-AWTKVKSGK 344 (344)
T ss_dssp HTTEECCCCCCHHHHHHHHH-HHHHHHHC-
T ss_pred HhhceecccCCHHHHHHHHH-HHHHHhccC
Confidence 89999888888778889999 999999874
No 7
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=99.93 E-value=3.5e-25 Score=208.53 Aligned_cols=196 Identities=22% Similarity=0.324 Sum_probs=158.3
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH--------------HHHHHHH
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI--------------AVQLNLA 81 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a--------------~~~~a~~ 81 (315)
+|++|++|+.+++.+|+||+++|++ +|+||+||++++++|++++.+.+...++.. ++.++++
T Consensus 119 ~G~~y~vP~~~~~~~l~YNkd~~~~----~P~Tw~el~~~~~~g~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~ 194 (343)
T 2v84_A 119 PKMEYSVPYYLGAAGIAVNKKAVPS----YARTWSIFSRKDLAYRMSMMDDMREVMGAALASLGYNVNTKNEQELAQAAI 194 (343)
T ss_dssp TTCSSCEEEEEECCEEEEETTTCCS----CCSSGGGGGCGGGTTSEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHHH
T ss_pred CCceEEeeeEeccEEEEEEhHhcCC----CCCCHHHHhCHHHcCeEEEECChHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 3899999999999999999999986 899999999999999999887665544432 2356777
Q ss_pred HHHh-h--------cHHHHHHHHcCCEEEEEEehhhHHH--HHHcCCCeEE-EeC-CCceeeeeeEEEeCCCCCcccccC
Q 036082 82 LLAN-Q--------SAHHLKAFGIGDVWVAVGWSSDVLP--AVKHMSNVAV-VPK-SGASLWADLWAIPAASRLETKQIG 148 (315)
Q Consensus 82 ~L~~-~--------~~~~~~~~~~Gev~~~~~ws~~~~~--~~~~~~~i~~-~Pk-eG~~~~~d~~~I~k~s~~~~~~~~ 148 (315)
.|.+ + ..+..+.|.+|+++|++.|++.+.. ....+.++++ +|. +|...+.++++|+++++|++
T Consensus 195 ~l~~~l~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~I~~~s~~~~---- 270 (343)
T 2v84_A 195 LVTDHWKPNLVKFDSDGYAKSFASGDFVVAHGFAEAFFAETPEAMHEHIDFFIPQDVASPVYVDSFCIPKGARNRD---- 270 (343)
T ss_dssp HHHHHTGGGEEEECSSSHHHHHHHTSCSEEEECHHHHHHHSCGGGGGGEEEECCTTTTCEEEEEEEBEETTCSCHH----
T ss_pred HHHHHHHhhhheeCchHHHHHHhcCCEEEEEEecHHHHHHHHHhcCCCeeEEeeCccCcceeeeeeEEECCCCCHH----
Confidence 7766 3 2356788999999999999988776 5555678999 998 89999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCC-CCchhhhccCCChhhhcCCCCCCcccccCCCcHHHhhccccccC
Q 036082 149 GRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGAS-PSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFEFLEP 227 (315)
Q Consensus 149 ~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~-P~~~~~a~~~l~~e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 227 (315)
+|++||+|+++||.|..+++ ..++.+ ++ +.+...++ + .| . + +.+.++++.++.+
T Consensus 271 --------aA~~Fi~~l~s~e~q~~~~~-~~g~~P~~~--~~a~~~~~----~-~~-------~-~-~~~~~~~~~~~~~ 325 (343)
T 2v84_A 271 --------LAHAFINFFLEPAHYAEFLD-TFGFPSTIH--REAAAYQK----K-TP-------Y-Y-SEHDLERGTLKTD 325 (343)
T ss_dssp --------HHHHHHHHHTSHHHHHHHHH-HHTCCCSSB--TTGGGGCC----S-CC-------S-S-CGGGGSSSEECCC
T ss_pred --------HHHHHHHHHcCHHHHHHHHH-hhCCCCCcc--hhHHHhcc----c-cc-------c-C-CHHHHhhceeccC
Confidence 99999999999999999985 456655 44 34544454 2 22 2 4 5778999999988
Q ss_pred CCHHHHHHHHHHHHHhccc
Q 036082 228 LSEATLSDMSGWEIGSGQL 246 (315)
Q Consensus 228 l~~~~~~~~~~~~W~~ika 246 (315)
+++. .+.+.+ +|++|++
T Consensus 326 ~~~~-~~~~~~-~w~~~~~ 342 (343)
T 2v84_A 326 VGAA-IEHYNA-HWNAVRF 342 (343)
T ss_dssp CGGG-HHHHHH-HHHHHHH
T ss_pred CCHH-HHHHHH-HHHHHhc
Confidence 8764 788999 9999985
No 8
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=99.92 E-value=3.1e-24 Score=199.46 Aligned_cols=165 Identities=16% Similarity=0.249 Sum_probs=137.6
Q ss_pred CCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc-ccCCceEeecChHHHhhHH--------------HHHHHHH
Q 036082 17 GKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP-ELAGRISMVNSPREVIGSI--------------AVQLNLA 81 (315)
Q Consensus 17 G~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp-~~~Gki~~~d~~~~~~g~a--------------~~~~a~~ 81 (315)
|+.|++|+.+++.+|+||++++++ ++|+||+||+++ +++|++++.+.+...++.+ ++.++++
T Consensus 95 ~~~y~vp~~~~~~~l~yn~~~~~~---~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~ 171 (324)
T 4i1d_A 95 RSPYSVSYEFYSSVLAYSQKTFPK---DAPNSWVDFWDVKKFPGRRALRNHPIATLEAALMADGVAPDKLYPLDVDRAFK 171 (324)
T ss_dssp BCSSCEEEEEEEEEEEEETTTCSS---CCCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCGGGCCSCCHHHHHH
T ss_pred ccCceeeeecceEEEEEehhhcCC---CCCCCHHHHhChhhcCCceeccCCchhHHHHHHHhcCCChhhcCHHHHHHHHH
Confidence 367999999999999999999986 479999999999 8999999998766555543 2456676
Q ss_pred HHHhh----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCC
Q 036082 82 LLANQ----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGR 150 (315)
Q Consensus 82 ~L~~~----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~ 150 (315)
.|.++ +.+..+.|.+|+++|++.|++.+......+.++++ + +|..++.++++|+|+++|++
T Consensus 172 ~l~~l~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~i~k~s~~~~------ 243 (324)
T 4i1d_A 172 KLEEIKPHITVWWTSGAQSAQLLNDGEVDMEMAWNGRVSAVAKEGAKVSFTY--NQGILQSTSLCILKGAPNLE------ 243 (324)
T ss_dssp HHHHHGGGCSEEECSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTTCSEEEEE--EEEEEEEEEEEEBTTCTTHH------
T ss_pred HHHHHhhhhhhhccCcchHHHHHhCCCEEEEecccHHHHHHHhcCCCeEEEe--cCeeeeccEEEEECCCCCHH------
Confidence 66654 23567899999999999999999888888889999 6 48899999999999999998
Q ss_pred CCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccC--CChhhhcC
Q 036082 151 VRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVK--LPGELLKG 201 (315)
Q Consensus 151 ~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~--l~~e~~~~ 201 (315)
+|++||+|++|||+|..+++ ..++.+++ ..+... +|+++++.
T Consensus 244 ------~A~~fi~fl~s~e~q~~~~~-~~~~~p~~--~~a~~~~~~~~~~~~~ 287 (324)
T 4i1d_A 244 ------TAVKFLNEAVDPVHQANLPL-HIDYGPGN--PKAFETNVIKPERAAQ 287 (324)
T ss_dssp ------HHHHHHHHHTCHHHHHHGGG-TSSCEESS--GGGGGSSCSCHHHHTT
T ss_pred ------HHHHHHHHHhCHHHHHHHHH-hCCCCCCC--hhhhhhcCCCHHHHhh
Confidence 99999999999999999995 56765554 345445 89988764
No 9
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=99.91 E-value=3.1e-24 Score=199.93 Aligned_cols=165 Identities=12% Similarity=0.121 Sum_probs=138.5
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc-ccCCceEeec-ChHHHhhHH--------------HHHHHHH
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP-ELAGRISMVN-SPREVIGSI--------------AVQLNLA 81 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp-~~~Gki~~~d-~~~~~~g~a--------------~~~~a~~ 81 (315)
+.|++|+.+++.+|+||++++++ +|+||+||+++ +++|++++.+ +....++.+ ++.++++
T Consensus 92 ~~y~~p~~~~~~~l~yn~~~~~~----~P~tw~dl~~~~~~~g~i~~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~a~~ 167 (320)
T 4euo_A 92 TDYSVGSFYYSFVIGCNVDSVSA----CPKSWADLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPLDLDRAFK 167 (320)
T ss_dssp BTTBEEEEEEEEEEEECGGGSSC----CCCSHHHHTCTTTSCSCEEEECSSSTTHHHHHHHHTTCCGGGCCSCCHHHHHH
T ss_pred ccceeeeeeeeEEEEEEhhhhCC----CCCCHHHHhChhhCCCcEEEeCCCchHHHHHHHHHcCCChhhcCHHHHHHHHH
Confidence 35999999999999999999986 89999999998 4999999998 555555543 2457777
Q ss_pred HHHhh---------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEEEeCCCceeeeeeEEEeCCCCCcccccCCCCC
Q 036082 82 LLANQ---------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVR 152 (315)
Q Consensus 82 ~L~~~---------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~ 152 (315)
.|.++ +.+..+.|.+|+++|++.|++.+......+.++++.+ +|..+++++++|+++++|++
T Consensus 168 ~l~~l~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~i~k~s~~~e-------- 238 (320)
T 4euo_A 168 KLDTIKSDIIWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQSGVKVETSW-AQNITAADSLVVPKGTKNKD-------- 238 (320)
T ss_dssp HHHTTGGGEEEECSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTCCCEEEE-EEEEEEEEEEECBTTCSCHH--------
T ss_pred HHHHhhhceeEeCCCchHHHHHHcCCEEEEEeecHHHHHHHhCCCCeEEEe-cCceeecceEEEECCCCCHH--------
Confidence 77765 2467889999999999999999988888888999943 79999999999999999998
Q ss_pred CCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCC
Q 036082 153 GLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGK 202 (315)
Q Consensus 153 ~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~ 202 (315)
+|++||+||+|||+|..+++ ..+|.+++ ..+...+++++++..
T Consensus 239 ----~A~~fi~fl~s~e~q~~~~~-~~~~~p~~--~~a~~~l~~~~~~~~ 281 (320)
T 4euo_A 239 ----AAMKFIALATSAQAQADMAT-ATGYAPVN--IESAKLMDPKIAKSL 281 (320)
T ss_dssp ----HHHHHHHHHTSHHHHHHHHH-HHSCBCSB--TTSGGGSCHHHHTTS
T ss_pred ----HHHHHHHHHhCHHHHHHHHH-hcCCCCCC--HHHHhhCCHHHHhhC
Confidence 99999999999999999995 56765555 456667899887643
No 10
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=99.91 E-value=8.4e-24 Score=199.95 Aligned_cols=167 Identities=16% Similarity=0.240 Sum_probs=138.7
Q ss_pred CCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc-ccCCceEeecChHHHhhHH--------------HHHHHHH
Q 036082 17 GKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP-ELAGRISMVNSPREVIGSI--------------AVQLNLA 81 (315)
Q Consensus 17 G~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp-~~~Gki~~~d~~~~~~g~a--------------~~~~a~~ 81 (315)
|+.|++|+.+++.+|+||++++++. ++|+||+||+++ +++|++++.+.....++.+ +.+++++
T Consensus 129 ~~~y~~p~~~~~~~l~ynk~~~~~~--~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~ 206 (365)
T 3rpw_A 129 KRKKGVALQVIGVGLVYNKDKFKGD--KAPQTWADFWDVKKFPGRRCMPAWPRFTFEAALMADGVTKDKLYPIDMDRALK 206 (365)
T ss_dssp EETTEEEEEEEEEEEEEETTTSCTT--SSCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCTTSCCSCCHHHHHH
T ss_pred cCCeEEeeeeeeEEEEEEhhhcCCC--CCCCCHHHHhChhhCCCceeCCcCchHHHHHHHHHcCCChhhcCchhHHHHHH
Confidence 5679999999999999999999863 489999999999 8999999998766655543 2356777
Q ss_pred HHHhh----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCC
Q 036082 82 LLANQ----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGR 150 (315)
Q Consensus 82 ~L~~~----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~ 150 (315)
.|.++ +.+..+.|.+|+++|++.|++.+......+.++++ +| |...+.++++|+|+++|++
T Consensus 207 ~l~~l~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~~~~i~k~s~~~~------ 278 (365)
T 3rpw_A 207 KLKEIKPHVVKWWTTAAQPPQLILDGEADMCLAYTGSMSKLALEGAPIDLTFN--QGFVYYDFFSIPKGAPNYD------ 278 (365)
T ss_dssp HHHHHGGGEEEEECSTTHHHHHHHTTSCSEEEEEHHHHHHHHHHTCSEEEEEE--EEEEEEEEEECBTTCTTHH------
T ss_pred HHHHHhhhcccccCCccHHHHHHHcCCeEEEEehhHHHHHHHhCCCCeEEeeC--CeeeeceEEEEECCCCCHH------
Confidence 66654 33678899999999999999999888888889999 86 8889999999999999998
Q ss_pred CCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccC-CChhhhcCC
Q 036082 151 VRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVK-LPGELLKGK 202 (315)
Q Consensus 151 ~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~-l~~e~~~~~ 202 (315)
+|++||+|++|||+|..+++ ..++.+++ +.+... +++++++..
T Consensus 279 ------~A~~fi~~l~s~e~q~~~~~-~~~~~P~~--~~a~~~~l~~~~~~~~ 322 (365)
T 3rpw_A 279 ------NALKLLSWRLDPKRAAQLTS-TFPVALPS--KVVFDAATDKNIARYW 322 (365)
T ss_dssp ------HHHHHHHHHTCHHHHHHHHH-HSCCBCSC--HHHHHHCSCGGGGGGS
T ss_pred ------HHHHHHHHHcCHHHHHHHHH-hcCCCCCC--hhHHhcCCCHHHHhhC
Confidence 99999999999999999995 56665554 344444 788877643
No 11
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=99.89 E-value=2e-22 Score=187.98 Aligned_cols=162 Identities=19% Similarity=0.319 Sum_probs=130.9
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCce----EeecChHHHhhH-----H---------HHHHH
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRI----SMVNSPREVIGS-----I---------AVQLN 79 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki----~~~d~~~~~~g~-----a---------~~~~a 79 (315)
+.|++|+.+++.+|+||+++|++ +|+||+||++++++|++ ++.+......+. . ++.++
T Consensus 102 ~~y~vP~~~~~~~l~ynkd~~~~----~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a 177 (333)
T 3pu5_A 102 EGCGSLYDYSSVGIAYRPDKIQG----GVKSWKEFVERTVAGEFGKQVFFNNLSSNVRGAEVLSMFGKIYGSGYGDIEAS 177 (333)
T ss_dssp TTSCEECCBEEEEEEECTTTSTT----CCSSHHHHHHHHHHTTTTTCEEEECGGGTSSHHHHHHHHHHHHSSSTTCHHHH
T ss_pred CCccceeEeeeeEEEEchhhcCC----CCCCHHHHhChhhCCCccccccccCCcchhhHHHHHHHHHHHcCCCHHHHHHH
Confidence 45999999999999999999986 89999999999999999 887653321111 1 13466
Q ss_pred HHHHHhh----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCC-eEE-EeCCCceeeeeeEEEeCCCCCccccc
Q 036082 80 LALLANQ----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSN-VAV-VPKSGASLWADLWAIPAASRLETKQI 147 (315)
Q Consensus 80 ~~~L~~~----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~-i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~ 147 (315)
++.|.++ ..+..+.|.+|+++|++.|++.+......+.+ +++ +|++|..++.++++|++++ |++
T Consensus 178 ~~~l~~l~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~g~~~~~~~~~i~k~s-~~~--- 253 (333)
T 3pu5_A 178 IATLERMKPHIFKFFTAFNDPVVLLTSGEGAIGPGWDGRTFIAEDSTKGMVKWVDPTEGAVSSGPVMAVVKGG-KED--- 253 (333)
T ss_dssp HHHHHHHGGGEEEEECSTTHHHHHHHHTSCSEEEEEHHHHHHHHHHTTTSSEEECCTTCCEEECCEEEEBTTS-CHH---
T ss_pred HHHHHHhCcccccccCChHHHHHHHHcCCEEEEecccHHHHHHHhCCCCceeEEcCCCceeeccceEEEeCCC-CHH---
Confidence 6666654 23677899999999999999998888777766 999 9999999999999999999 998
Q ss_pred CCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcC
Q 036082 148 GGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKG 201 (315)
Q Consensus 148 ~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~ 201 (315)
+|++||+|++|||+|..+++ ..++.+++ ..+ .+++++++.
T Consensus 254 ---------~A~~Fi~~l~s~e~q~~~~~-~~g~~P~~--~~~--~~~~~~~~~ 293 (333)
T 3pu5_A 254 ---------LAKAFMNYALGEEAQKAFCE-AMYYGAVN--RKV--QYSEKLKHR 293 (333)
T ss_dssp ---------HHHHHHHHHTSHHHHHHHHH-HHTCBCSC--TTC--CCCTTTTTT
T ss_pred ---------HHHHHHHHHcCHHHHHHHHH-hcCCCCCC--CCc--CCCHHHHhc
Confidence 99999999999999999985 45654444 233 477777653
No 12
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=99.85 E-value=7.2e-21 Score=176.97 Aligned_cols=163 Identities=22% Similarity=0.297 Sum_probs=131.7
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH----------------HHHHH
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI----------------AVQLN 79 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a----------------~~~~a 79 (315)
+|++|++|+..++.+|+||+++ + ++|+||+||++++++|++.+.+... .++.. +..++
T Consensus 128 ~g~~y~~P~~~~~~~l~ynkd~-~----~~p~tw~el~~~~~~g~~~~~~~~~-~~g~~~~~~~~~~~G~~~~~~~~~~~ 201 (351)
T 4edp_A 128 VEAGYGPAYTLNSIGIVVDPSA-G----IEINSWEDLWKPELKNKIAIPDITT-TNGPAMVEIAAEKAGVDVKTDNGEAA 201 (351)
T ss_dssp HHHTSSCEEEEEEEEEEECGGG-C----CCCCSGGGGGCGGGTTCEEEECTTS-TTHHHHHHHHHHHHTCCHHHHTTHHH
T ss_pred CCCeeEEEEEeeEEEEEEcCCC-C----CCCCCHHHHhChHhcCCeeecCccc-ccchHHHHHHHHhcCCCCChhhHHHH
Confidence 4789999999999999999999 4 4899999999999999999876432 11111 12456
Q ss_pred HHHHHhh----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccC
Q 036082 80 LALLANQ----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIG 148 (315)
Q Consensus 80 ~~~L~~~----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~ 148 (315)
++.+.++ ..+..+.|.+|+++|++.|+..+..+...++++.+ +|++|...+.++++|+++++|++
T Consensus 202 ~~~~~~l~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~---- 277 (351)
T 4edp_A 202 FKELEALKPNVVKTYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKD---- 277 (351)
T ss_dssp HHHHHHHGGGEEEEECCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCSCHH----
T ss_pred HHHHHHHHHhhhcccCChHHHHHHHHcCCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCCCHH----
Confidence 6666554 34677899999999999999998888888899999 99999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcC
Q 036082 149 GRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKG 201 (315)
Q Consensus 149 ~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~ 201 (315)
+|++||+|+++||+|..+++ ..++ .|.. +.+ .+++++++.
T Consensus 278 --------~A~~fi~~l~s~e~q~~~~~-~~g~-~P~~-~~~--~~~~~~~~~ 317 (351)
T 4edp_A 278 --------LAYEFINYALSKEVQEKTAK-ALNE-SPVN-KEV--KLSEEETKN 317 (351)
T ss_dssp --------HHHHHHHHHTSHHHHHHHHH-HHCC-BCCB-TTC--CCCTTTTTT
T ss_pred --------HHHHHHHHhcCHHHHHHHHH-hcCC-CCCc-CCc--cCCHHHHhc
Confidence 99999999999999999985 4454 4443 233 567777653
No 13
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=99.81 E-value=2.3e-19 Score=167.87 Aligned_cols=160 Identities=17% Similarity=0.182 Sum_probs=121.2
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH------H-H-HHHHHHHHhh---
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI------A-V-QLNLALLANQ--- 86 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a------~-~-~~a~~~L~~~--- 86 (315)
+.|++|+.+++.+|+||++++++ +|+||+||++++++|++++.+.....++.. . + +++++.|.++
T Consensus 117 ~~y~vP~~~~~~~l~YNkd~~~~----~P~Tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~l~~~ 192 (330)
T 2qry_A 117 NDTFVPFDYGYFAFVYDKNKLKN----PPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKK 192 (330)
T ss_dssp CSSCEEEEEEEEEEEEETTTCSS----CCSSHHHHHHCSSCCCEEEECTTTCHHHHHHHHHHHHHHGGGHHHHHHHHHTT
T ss_pred cCeEEEEeccceEEEEehhhccC----CCCCHHHHHhHHhcCeeEeeCCCCCchHHHHHHHHHHhhChHHHHHHHHHHhc
Confidence 35999999999999999999986 899999999999999999876543332221 0 0 2345544433
Q ss_pred -------cHHHHHHHHcCCEEEEEEehhhHH-HHH-HcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHH
Q 036082 87 -------SAHHLKAFGIGDVWVAVGWSSDVL-PAV-KHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSP 156 (315)
Q Consensus 87 -------~~~~~~~~~~Gev~~~~~ws~~~~-~~~-~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~ 156 (315)
..+..+.|.+|+++|++.|++... ... ..+.++++ +|.+|...+.++++|+++++|++
T Consensus 193 ~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~i~~~s~~~~------------ 260 (330)
T 2qry_A 193 TVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPE------------ 260 (330)
T ss_dssp EEEEESSHHHHHHHHHTTSCSEEEEETTHHHHHHHHHCCCCEEECCCTTCEEEEEEEEEEBTTCSCHH------------
T ss_pred CceeccChHHHHHHHhCCCEEEEEecccHHHHHhhhccCCceeEEeCCCCCeeeeeEEEEECCCCCHH------------
Confidence 235678899999999999988653 332 34568888 88889888899999999999998
Q ss_pred HHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhh
Q 036082 157 LIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELL 199 (315)
Q Consensus 157 ~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~ 199 (315)
+|++||+|++++|.|..+++ ..++ .|+ . . ..+|++++
T Consensus 261 ~A~~fi~fl~s~e~q~~~~~-~~g~-~P~-~-~--v~~~~~~~ 297 (330)
T 2qry_A 261 LAQKFLQFMVSPAFQNAIPT-GNWM-YPV-A-N--VTLPAGFE 297 (330)
T ss_dssp HHHHHHHHHTSHHHHTTHHH-HTCS-EES-S-C--CCCCTTGG
T ss_pred HHHHHHHHHcCHHHHHHHHh-hccc-ccc-C-C--CCCChhhh
Confidence 99999999999999999884 3343 443 2 2 24666554
No 14
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=99.78 E-value=8.2e-19 Score=165.71 Aligned_cols=151 Identities=15% Similarity=0.222 Sum_probs=116.9
Q ss_pred CCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcC------cccCCceEeecChHHHhhHH----H---HHHHHHHH
Q 036082 17 GKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR------PELAGRISMVNSPREVIGSI----A---VQLNLALL 83 (315)
Q Consensus 17 G~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d------p~~~Gki~~~d~~~~~~g~a----~---~~~a~~~L 83 (315)
|+.| |+.+++.+|+||++++++. ++|+||+||++ ++++|++++.+......+.. + .+++++.|
T Consensus 127 ~~~~--~~~~~~~~l~YNk~~~~~~--~~P~tw~dL~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 202 (355)
T 3c9h_A 127 NTAY--ALTFEPAVFVYHKPSFTTE--KPPATRAEFVDYLERHAKEVHGRIATYDIERSGVGFLFMSRDQEQFGDIWSVI 202 (355)
T ss_dssp TTEE--ECBCEEEEEEEEGGGCSSS--CCCCSHHHHHHHHHHTHHHHTTCEEEECTTC-CHHHHHHHHHHHHCTTHHHHH
T ss_pred CeEE--EEecCcEEEEEEHHhcCCC--CCCCCHHHHHHHHHhcchhhCCceeecCccccchHHHHHhcchhccHHHHHHH
Confidence 6655 6778899999999999864 47999999998 88999999877543322222 1 12344444
Q ss_pred Hhh----------cHHHHHHHHcCCEEEEEEehhhHHHH-HHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCC
Q 036082 84 ANQ----------SAHHLKAFGIGDVWVAVGWSSDVLPA-VKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRV 151 (315)
Q Consensus 84 ~~~----------~~~~~~~~~~Gev~~~~~ws~~~~~~-~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~ 151 (315)
.++ +.+..+.|.+|+++|++.|++.+... ...++++++ +|++|...+.++++|+|+++|++
T Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~I~k~s~~~e------- 275 (355)
T 3c9h_A 203 KAMGAAGVKVYSTSSAILERVSDGRFVLGYNILGSYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPE------- 275 (355)
T ss_dssp HHHHHTTCEEESCHHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTEEEECCSSCEEEECCEEEEETTBSCHH-------
T ss_pred HHHHhcCCeecCCcHHHHHHHHCCCeEEEEecchhHHHHHHhcCCCeeEEecCCCceeeeeEEEEECCCCCHH-------
Confidence 332 24667899999999999998877654 345778999 99999988899999999999998
Q ss_pred CCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCC
Q 036082 152 RGLSPLIHQWIEFCLQTARALPFKQEVIPGASPS 185 (315)
Q Consensus 152 ~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~ 185 (315)
+|++||+|++|+|+|..+++ ..++ .|.
T Consensus 276 -----aA~~Fi~fl~s~e~q~~~~~-~~~~-~P~ 302 (355)
T 3c9h_A 276 -----LGRRYLEFFMSKEGQTIMAR-QLQI-PAV 302 (355)
T ss_dssp -----HHHHHHHHHHSHHHHHHHHH-HSCC-CBC
T ss_pred -----HHHHHHHHHcCHHHHHHHHh-cCCC-cCc
Confidence 99999999999999999984 4444 344
No 15
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=99.78 E-value=1.1e-18 Score=167.40 Aligned_cols=208 Identities=13% Similarity=0.071 Sum_probs=137.5
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCC-CCCChHhhcCc--cc--CCceEeecC----hH----HHhhHH--------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLA-PIEDWKDLWRP--EL--AGRISMVNS----PR----EVIGSI-------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~-~P~SW~dL~dp--~~--~Gki~~~d~----~~----~~~g~a-------- 74 (315)
||++|+||+.+++.+|+||+++|+++|++ +|+||++|++. ++ +|...+... .. ..+...
T Consensus 126 dG~~y~vP~~~~~~~l~ynkdl~~~~G~~~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (414)
T 3quf_A 126 DGKTYGMPVSAWVGAFFYNKDILKKAGYDKFPKTWDEFIEMGKKINSNGSTAFLEDFNTQIAGSFTGLLASYYGEQGKSG 205 (414)
T ss_dssp TTEECCBCCEEEEEEEEEEHHHHHHTTCSSCCSBHHHHHHHHHHHHHTTSEEECCCCSSSSCHHHHHHHHHHHHTTTCCS
T ss_pred CCeEEEeccccceeEEEEeHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCCeeccccccchHHHHHHHHHhhccccCch
Confidence 49999999999999999999999999998 99999999975 33 365544322 00 011100
Q ss_pred ---------------HHHHHHHHHHhh--------------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--Ee
Q 036082 75 ---------------AVQLNLALLANQ--------------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VP 123 (315)
Q Consensus 75 ---------------~~~~a~~~L~~~--------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~P 123 (315)
...++++.+.++ ..+..+.|.+|++.|.+.++..+..+...+.++++ +|
T Consensus 206 ~~~~~~~~g~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P 285 (414)
T 3quf_A 206 DLDADIWSGKSTFTKDWTPVFKRWEAAAKAGVIPQKSVGLSADQVKQEFVSGNLGVMRSGPWDLPDLQKSDIDFGVAPFP 285 (414)
T ss_dssp STTHHHHTTSSCHHHHTHHHHHHHHHHHHTTSSCGGGTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECBC
T ss_pred hHHHHHhcCCcccChHHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHcCCceEEEcCcccHHHHhhhccceeEEecC
Confidence 112455544433 13557899999999999999888887777778887 67
Q ss_pred C--CC-----ceeeeeeEEEeCCCC--CcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCC
Q 036082 124 K--SG-----ASLWADLWAIPAASR--LETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKL 194 (315)
Q Consensus 124 k--eG-----~~~~~d~~~I~k~s~--~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l 194 (315)
. +| ...+..+++|+++++ |++ +|.+||+||++||+|..+++ ..++.+++ +.+...+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~I~~~s~~~~~e------------~A~~fl~~l~s~e~~~~~~~-~~g~~P~~--~~~~~~~ 350 (414)
T 3quf_A 286 AYSKEDGQWINGGPDQGFAIASRASDKEKA------------AAKKFLAYLNSEEGLEAFTS-AAGTLSLS--SKYNAEP 350 (414)
T ss_dssp BSSCTTCCBEEEEESCEEEEBSSSCHHHHH------------HHHHHHHHHTSHHHHHHHHH-HHTCEECB--TTCCCCC
T ss_pred CcCCCCccceecccCccEEEECCCCccCHH------------HHHHHHHHHcCHHHHHHHHH-hcCCCCCc--cCcccCc
Confidence 4 33 123446899999999 988 99999999999999999985 45654443 2332233
Q ss_pred ChhhhcCCCCCCcccccCCCcHHHhhccccccCCCHHHHHHHHHHHHHhcccCC
Q 036082 195 PGELLKGKPSLDTNLIAGVPPAEILARFEFLEPLSEATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 195 ~~e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~W~~ikag~ 248 (315)
++.+.+... ..+....... ..+.+..+.....+.. .++++..|+
T Consensus 351 ~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~G~ 394 (414)
T 3quf_A 351 PAELKDVVD-------NYFKQNKFYW--VNWPKSPTVMSTEGIA-QQQKIVQGQ 394 (414)
T ss_dssp CGGGHHHHH-------HTTTTTCEEC--CCCSSCHHHHHHHHHH-HHHHHHTTS
T ss_pred hHHHHHHHH-------HHHhcCCEEe--eeccccchHHHHHHHH-HhHHHHhCC
Confidence 333322100 0010000000 2233334556677788 889999998
No 16
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=99.78 E-value=4e-18 Score=166.63 Aligned_cols=209 Identities=15% Similarity=0.144 Sum_probs=139.3
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCC-CCCCChHhhcCc--cc-----CCceEeec---ChHHHhhHH------
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNL-APIEDWKDLWRP--EL-----AGRISMVN---SPREVIGSI------ 74 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl-~~P~SW~dL~dp--~~-----~Gki~~~d---~~~~~~g~a------ 74 (315)
.+| |++|+||+.+++.+|+||+++|+++|+ ++|+||+||++. ++ .|...+.- .....+.+.
T Consensus 130 ~~d--G~~y~vP~~~~~~~l~Ynkdl~~~aGl~~~P~Twdel~~~~~~l~~~~g~~~~g~~~~~~~~~~~~~~~~~~G~~ 207 (458)
T 3uor_A 130 LVD--GTLYGVPWYVDTRLLFYRKDLLREAGYSQMPKTWAEMEQVMAAIKRKVGPDRYAILMPLNEFEQQLSFALQQDDR 207 (458)
T ss_dssp EET--TEECCEEEEEECCEEEEEHHHHHHTTCSSCCCBHHHHHHHHHHHHHHHCTTSEEEECCTTCCHHHHHHHHTSSSC
T ss_pred EEC--CEEEEecccCcccEEEEeHHHHHHcCCCCCCCCHHHHHHHHHHHhcccCCCceeEecCchhHHHHHHHHHHcCCe
Confidence 445 999999999999999999999999999 899999999974 33 23443321 111111111
Q ss_pred --------------HHHHHHHHHHhh-------------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCC-----CeEE-
Q 036082 75 --------------AVQLNLALLANQ-------------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMS-----NVAV- 121 (315)
Q Consensus 75 --------------~~~~a~~~L~~~-------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~-----~i~~- 121 (315)
...++++.+.++ ..+..+.|.+|++.|.+.++..+..+....+ ++++
T Consensus 208 ~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (458)
T 3uor_A 208 LLRDHDNYGNFRGAGFRKALGFYDNMYQQGWAPKVSETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPPGMEGNWGTA 287 (458)
T ss_dssp SEETTTTEECTTSHHHHHHHHHHHHHHHTTSSCCCCGGGSSCHHHHHHHTSEEEEEECTHHHHHHHHHCCGGGTTSEEEE
T ss_pred EEcCCCCeeecCCHHHHHHHHHHHHHHHcCCCCCcccccchHHHHHHhcCCEEEEEcCcchHHHHhhhCcccccceEEEE
Confidence 235566655543 1135789999999999999887777665443 6777
Q ss_pred -EeC----CCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCCh
Q 036082 122 -VPK----SGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPG 196 (315)
Q Consensus 122 -~Pk----eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~ 196 (315)
+|. .+...+..+++|+++++|++ +|++||+||+++|+|..+.+ ..++.+++ +.+.. ++
T Consensus 288 ~~P~~~~~~~~~~~~~~~~I~~~s~~~e------------aA~~fl~~l~s~e~q~~~~~-~~g~~P~~--~~~~~--~~ 350 (458)
T 3uor_A 288 PLPGPNGLGAGIAGGSSLVIFKSSQHKD------------ASWKLIEYLSQPQVQARFHA-IIGDLPPR--RSTWK--LP 350 (458)
T ss_dssp CCBBSSSBCCCBCEEEEEEEBTTCSCHH------------HHHHHHHHHTSHHHHHHHHH-HHCCBCSB--HHHHH--SH
T ss_pred eCCCCCCCCccccCceEEEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHH-hcCCCCCc--HHHhh--Ch
Confidence 776 34566778999999999998 99999999999999999985 45554443 22211 23
Q ss_pred hhhcCCCCCCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCC
Q 036082 197 ELLKGKPSLDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 197 e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~ 248 (315)
++.. .+.. -.-.+.+......+..+ ......+.. .++++..|.
T Consensus 351 ~~~~-~~~~-------~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~G~ 395 (458)
T 3uor_A 351 SLAN-DALA-------HAFGDQLERVKATPKVLEWERIVQEMRL-VTERVVRGG 395 (458)
T ss_dssp HHHT-CTTT-------HHHHHHTTTCBCCCCCTTHHHHHHHHHH-HHHHHHHHC
T ss_pred hhcc-ChHH-------HHHHHHHHhCcCCCCCCCHHHHHHHHHH-HHHHHHhCC
Confidence 3332 1111 01123333333322222 345566777 888888887
No 17
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=99.77 E-value=3e-18 Score=170.45 Aligned_cols=227 Identities=18% Similarity=0.217 Sum_probs=151.3
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecChHHH---hhHH----------
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSPREV---IGSI---------- 74 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~~~~---~g~a---------- 74 (315)
.+| |++||||+.+++.+|+||+++|++ +|+||++|++. ++ +|+..+.-...+. +.+.
T Consensus 98 ~~d--Gk~YgvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~ 171 (500)
T 3ob4_A 98 RYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKY 171 (500)
T ss_dssp EET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEE
T ss_pred EEC--CEEEEEecccCceEEEEEhHHhcC----CCCCHHHHHHHHHHHHhCCCceEEeecCccHHHHHHHHHhCCeeecc
Confidence 455 999999999999999999999985 89999999985 33 4654432211111 1110
Q ss_pred ---------------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCC-
Q 036082 75 ---------------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKS- 125 (315)
Q Consensus 75 ---------------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pke- 125 (315)
...++++.+.++ ..+..+.|.+|+++|.+.|+..+..+...+.++++ +|..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~ 251 (500)
T 3ob4_A 172 AAGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFK 251 (500)
T ss_dssp CSSSEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHTSSCCEEEECCCEET
T ss_pred cCCccccCCcccCCHHHHHHHHHHHHHHHcCCCCCCCChhHHHHHHHcCCeeEEecCchhHHHHHhcCCCeEEEECCCCC
Confidence 234566665554 13567899999999999999888887777778887 6752
Q ss_pred ----CceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhc
Q 036082 126 ----GASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALESTLVKLPGELLK 200 (315)
Q Consensus 126 ----G~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~ 200 (315)
+...+..+++|+++++|++ +|++||+ |++++|++..++. ..++..|.. +.. .+.+.+
T Consensus 252 g~~~~~~~g~~~~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~-~~~~~~p~~-~~~----~~~~~~ 313 (500)
T 3ob4_A 252 GQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSY----EEELAK 313 (500)
T ss_dssp TEECCCEEEEEEEEEETTCSCHH------------HHHHHHHHTTTSHHHHHHHHH-HSCCSEESB-HHH----HHHHTT
T ss_pred CCCccccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-cCCCCCCch-hhh----hHhhhh
Confidence 2356678999999999998 9999995 9999999999985 445444543 222 122211
Q ss_pred CCCCCCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCC-CcchhHHHHHHHHhhhhhHHHHH
Q 036082 201 GKPSLDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQ-SITSLVKEASAALYITGCTEMAE 271 (315)
Q Consensus 201 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~-~~~~~~~~~~a~~~~~~~~~~~~ 271 (315)
.| .+ ....+.+......+.++ ......+.. .++++..|. +..++.+++.+++-.+.|++..+
T Consensus 314 -~p----~~---~~~~~~~~~~~~~p~~p~~~~~~~~~~~-~i~~vl~G~~t~eeAl~~~~~~i~~e~~~~~l~ 378 (500)
T 3ob4_A 314 -DP----RI---AATMENAQKGEIMPNIPQMSAFWYAVRT-AVINAASGRQTVDAALAAAQTNAAARRCQSQLE 378 (500)
T ss_dssp -SH----HH---HHHHHHHHHSEECCCSTHHHHHHHHHHH-HHHHHHHTSSCHHHHHHHHHHHHTSCCHHHHHH
T ss_pred -Ch----hH---HHHHHHHhcCccCCCCCcHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11 11123344444444343 234456777 888898887 66666777666655677766544
No 18
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A
Probab=99.77 E-value=3.6e-18 Score=159.10 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=120.1
Q ss_pred CCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH---------HHHHHHHHHH
Q 036082 14 DPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI---------AVQLNLALLA 84 (315)
Q Consensus 14 DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a---------~~~~a~~~L~ 84 (315)
+++|+.|++|+ ++.+|+||+++++++ +|+||+||++++++|++.+.+... .++.. ...++++.+.
T Consensus 108 ~~dG~~y~~p~--~~~~l~Ynkd~~~~~---~p~tw~el~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~g~~~a~~~~~ 181 (334)
T 2pt1_A 108 SPDGMWFGFTK--RARVIMYNKGKVKPE---ELSTYEELADPKWKGRVIIRSSSN-EYNQSLVASLVVADGEESTLAWAK 181 (334)
T ss_dssp CTTSSCEEEEE--EEEEEEEETTTCCGG---GCCCSGGGGSGGGTTCBCCCCTTS-HHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCCcEEeecc--ccEEEEEeccccccc---CCCCHHHHhhhhhcCeeEecCCCC-chHHHHHHHHHHccChHHHHHHHH
Confidence 56799999997 789999999999875 689999999999999988765431 22211 1234444443
Q ss_pred hh----------c-HHHHHHHHcCCEEEEEEehhhHHHHHH--------cCCCeEE-EeC---CCceeeeeeEEEeCCCC
Q 036082 85 NQ----------S-AHHLKAFGIGDVWVAVGWSSDVLPAVK--------HMSNVAV-VPK---SGASLWADLWAIPAASR 141 (315)
Q Consensus 85 ~~----------~-~~~~~~~~~Gev~~~~~ws~~~~~~~~--------~~~~i~~-~Pk---eG~~~~~d~~~I~k~s~ 141 (315)
++ + .+..+.|.+|+++|++.|+.....+.. .+.++++ +|. +|...+.++++|+++++
T Consensus 182 ~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~ 261 (334)
T 2pt1_A 182 GFVSNFAREPQGNDTAQIEAVSSGEADLTLANTYYMGRLLESEDPAQKAIAENVGVFFPNQEGRGTHVNVSGVGVVKTAP 261 (334)
T ss_dssp HHHHTBSSCCCSCHHHHHHHHHHTSCSEEEEEHHHHHHHHTCSCHHHHHHHHTEEEECCCTTTTCBCEEEEEEEEBTTCT
T ss_pred HHHHhcCCCCCCCCHHHHHHHhcCceeEEeccchhhHhhhhcccccccccccceeEEecCCCCCCCEeceeEEEEECCCC
Confidence 32 1 246788999999999998765544432 1246888 997 57788889999999999
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhc
Q 036082 142 LETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLK 200 (315)
Q Consensus 142 ~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~ 200 (315)
|++ +|++||+|++|+|+|..+++ ..++ .|.. +.+ ..++++.+
T Consensus 262 ~~~------------aA~~fi~~l~s~e~q~~~~~-~~~~-~P~~-~~~--~~~~~~~~ 303 (334)
T 2pt1_A 262 NRE------------GAVKFIEFLVSEPAQAFLAQ-NNYE-YPVL-AGV--PLNKSVAS 303 (334)
T ss_dssp THH------------HHHHHHHHHTSHHHHHHHHH-HHCC-EESS-TTC--CCCHHHHT
T ss_pred CHH------------HHHHHHHHHhCHHHHHHHHh-hcCC-cCcc-CCC--CCCcccCC
Confidence 998 99999999999999999985 3343 4443 222 34566553
No 19
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=99.77 E-value=4.5e-18 Score=163.13 Aligned_cols=207 Identities=14% Similarity=0.111 Sum_probs=135.6
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--ccC---CceEeec---ChHHHhhHH-------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA---GRISMVN---SPREVIGSI------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~---Gki~~~d---~~~~~~g~a------------- 74 (315)
||++|+||+.+++.+|+||+++|+++|+++|+||+||++. +++ |...+.. .......+.
T Consensus 130 dG~~y~vP~~~~~~~l~ynkdl~~~~Gl~~P~Twdel~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 209 (412)
T 3k01_A 130 EGKTYAVPQVIDTLALFYNKELLTKAGVEVPGSVAELKTAAAEITEKTGATGLYLRGDDPYWFLPYLYGEGGDLVDEKNK 209 (412)
T ss_dssp TTEECCEEEEEEECEEEEEHHHHHHHTCCCCSBHHHHHHHHHHHHHHHSCEEEECCCSCGGGGHHHHHHTTCCSEETTTT
T ss_pred CCcEEEeeeecceeEEEEEHHHHHHcCCCCCCCHHHHHHHHHHHhcccCCCceeeCCcchHHHHHHHHHcCCceECCCCC
Confidence 4999999999999999999999999999999999999974 333 5544221 111111110
Q ss_pred -------HHHHHHHHHHhh-------------cHHHHHHHHcCCEEEEEEehhhHHHHHHcC-----CCeEE--EeCC--
Q 036082 75 -------AVQLNLALLANQ-------------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHM-----SNVAV--VPKS-- 125 (315)
Q Consensus 75 -------~~~~a~~~L~~~-------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~-----~~i~~--~Pke-- 125 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+....... .++++ +|..
T Consensus 210 ~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~~ 289 (412)
T 3k01_A 210 TVTVDDEAGVRAYRVIKDLVDSKAAITDASDGWNNMQNAFKSGKVAMMVNGPWAIEDVKAGARFKDAGNLGVAPVPAGSA 289 (412)
T ss_dssp EECTTSHHHHHHHHHHHHHHHTTSEECCSSCHHHHHHHHHHHTSEEEEEECGGGHHHHHTSTTCSSGGGEEEEECCBCSS
T ss_pred eeccCCHHHHHHHHHHHHHHHcCCCCCCcccchhhHHHHHhcCCEEEEECCccchHhhhhccccCccceeEEEeCCCCCC
Confidence 234566655543 134578999999999999777666555422 23776 6642
Q ss_pred C--ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCC
Q 036082 126 G--ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKP 203 (315)
Q Consensus 126 G--~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~ 203 (315)
| ...+..+++|+++++|++ +|++||+||+++|+|..++. ..++. |.. +.+. ++++...+
T Consensus 290 ~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~~l~s~e~q~~~~~-~~g~~-P~~-~~~~---~~~~~~~~- 350 (412)
T 3k01_A 290 GQGSPQGGWNLSVYAGSKNLD------------ASYAFVKYMSSAKVQQQTTE-KLSLL-PTR-TSVY---EVPSVADN- 350 (412)
T ss_dssp CCCEEEEEEEEEEBTTCSCHH------------HHHHHHHHHHSHHHHHHHHH-HHCCC-BSB-GGGG---GSHHHHTC-
T ss_pred CCccccCceeEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHH-hcCCC-Ccc-hhhc---ChhhhhCc-
Confidence 2 456678999999999998 99999999999999999985 44554 443 2221 34443321
Q ss_pred CCCcccccCCCcHHHhhcccccc--CCCHHHHHHHHHHHHHhcccCC
Q 036082 204 SLDTNLIAGVPPAEILARFEFLE--PLSEATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~~~~~--~l~~~~~~~~~~~~W~~ikag~ 248 (315)
.+..++ .+.+......+ +........+.. .++++..|.
T Consensus 351 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 390 (412)
T 3k01_A 351 ----EMVKFF--KPAVDKAVERPWIAEGNALFEPIRL-QMANVLSGE 390 (412)
T ss_dssp ----HHHHHH--HHHHTTEECCCCSTTGGGGHHHHHH-HHHHHHTTS
T ss_pred ----hhHHHH--HHHHHhcccCCCCCchHHHHHHHHH-HHHHHHcCC
Confidence 110001 12233322222 222445667888 899999997
No 20
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=99.76 E-value=1e-17 Score=154.60 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=115.2
Q ss_pred CCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHH---hhH-H---HHHHHHHHHHhh
Q 036082 14 DPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREV---IGS-I---AVQLNLALLANQ 86 (315)
Q Consensus 14 DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~---~g~-a---~~~~a~~~L~~~ 86 (315)
+++| |++|+.+++.+|+||+++|+++| +|+||+||++++++|++.+....... +.. . ..+++++.+.++
T Consensus 93 ~~~g--y~~P~~~~~~~l~ynk~~~~~~~--~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~a~~~~~~l 168 (312)
T 1xvx_A 93 PEHG--RWTGIAARSTVFVYNPEKISEAE--LPKSIMDLAKPEWKGRWAASPSGADFQAIVSAMLELKGEKATLEWLKAM 168 (312)
T ss_dssp CSSS--SCEEEEEEEEEEEECTTTSCGGG--SCSSGGGGGSGGGTTSEEECTTSHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCC--eEEEEeccceEEEEEhhhccccC--CCCCHHHHhCHHhcCCEeeCCCCccHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4445 99999999999999999998765 68999999999999998876221111 100 0 012344444433
Q ss_pred ---------cHHHHHHHHcCCEEEEEEehhhHHHHHH----cCCCeEE-EeCC---CceeeeeeEEEeCCCCCcccccCC
Q 036082 87 ---------SAHHLKAFGIGDVWVAVGWSSDVLPAVK----HMSNVAV-VPKS---GASLWADLWAIPAASRLETKQIGG 149 (315)
Q Consensus 87 ---------~~~~~~~~~~Gev~~~~~ws~~~~~~~~----~~~~i~~-~Pke---G~~~~~d~~~I~k~s~~~~~~~~~ 149 (315)
..+..+.|.+|+++|++.|++.+..... .+.++++ +|.+ |...+.++++|+++++|++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~~~~----- 243 (312)
T 1xvx_A 169 KTNFTAYKGNSTVMKAVNAGQIDGGVIYHYYRFVDQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPK----- 243 (312)
T ss_dssp HHHEEECSSHHHHHHHHHTTSSSEEEEETHHHHHHHTTTCTTTTTCEEECCCTTCGGGCEEEEEEEEBTTCSSHH-----
T ss_pred HHhCcccCCchHHHHHHHcCceEEEEecchhHHHHHhhcccCCCceEEEccCCCCCcceeeeeeEEEecCCCCHH-----
Confidence 2456788999999999999887765432 3457888 8875 5677788999999999998
Q ss_pred CCCCCHHHHHHHHHHHhcHHHHHHH-HhhhCCCCCCCc
Q 036082 150 RVRGLSPLIHQWIEFCLQTARALPF-KQEVIPGASPSA 186 (315)
Q Consensus 150 ~~~~~~~~A~~FInfllspe~q~~~-~~e~~~~~~P~~ 186 (315)
+|++||+|++|+|.|..+ .+ . ++..|..
T Consensus 244 -------~A~~fi~fl~s~e~q~~~~~~-~-~~~~P~~ 272 (312)
T 1xvx_A 244 -------EAQEFVKWITGKSGQDILRTN-N-AFEYAVG 272 (312)
T ss_dssp -------HHHHHHHHHHSHHHHHHHHHS-S-SCCBCCB
T ss_pred -------HHHHHHHHHhCHHHHHHHhhc-c-CcccCCC
Confidence 999999999999999998 73 3 3334543
No 21
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=99.76 E-value=1.3e-17 Score=153.67 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=119.9
Q ss_pred CcCCCCCeEeeeeeeceEEEEEeccc-ccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH---------HHHHHHH
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSK-FRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI---------AVQLNLA 81 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~-~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a---------~~~~a~~ 81 (315)
..|++|+. +|+.+++.+|+||+++ |++ ++|+||+||++++++|++.+.+.... ++.. ..+++++
T Consensus 89 ~~~~~g~~--~~~~~~~~~l~yn~~~~~~~---~~p~tw~dl~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~G~~~a~~ 162 (322)
T 3e13_X 89 LRDKDKEW--FAITKRARIIAYNKNTNIDI---SKMKNYEDLAKAEFKGEIVMRSATAP-YSKTLLASIIANDGNKEAKA 162 (322)
T ss_dssp GBCTTSSC--EEEEEEEEEEEEETTSCCCC---TTCCSGGGGGSGGGTTCEECCCTTSH-HHHHHHHHHHHHHCHHHHHH
T ss_pred hCCCCCcE--EEeeceeEEEEECCccccCC---CCCCCHHHHhhhhhcCeEeecCCCCc-hhHHHHHHHHHhcCHHHHHH
Confidence 45677764 6666889999999999 986 48999999999999999998765432 2111 1234455
Q ss_pred HHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHH--------HcCCCeEE-EeC---CCceeeeeeEEEeC
Q 036082 82 LLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAV--------KHMSNVAV-VPK---SGASLWADLWAIPA 138 (315)
Q Consensus 82 ~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~--------~~~~~i~~-~Pk---eG~~~~~d~~~I~k 138 (315)
.+.++ +.+..+.|.+|+++|++.++.....+. ..+.++++ +|. +|...+.++++|++
T Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~ 242 (322)
T 3e13_X 163 WAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIGLLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTK 242 (322)
T ss_dssp HHHHHHHHBSSSCCSSHHHHHHHHHHTSCSEEEEEHHHHHHHHTCSSHHHHHHHHTEEEECTTTTTTCBCEEEEEEEEET
T ss_pred HHHHHHHhcCcCCCCCcHHHHHHHHCCCCcEEeechHHHHHHHhccccchhccccceeEecCCCCCCCceeeeeeeEEec
Confidence 44433 124578899999999998544332222 23467898 998 78999999999999
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhh
Q 036082 139 ASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELL 199 (315)
Q Consensus 139 ~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~ 199 (315)
+++|++ +|++||+||+|+|+|..+++ . ++..|.+ .. ...++++.
T Consensus 243 ~s~~~~------------~A~~fi~fl~s~e~q~~~~~-~-~~~~P~~-~~--~~~~~~~~ 286 (322)
T 3e13_X 243 SSKNQD------------AAKKFMEFMLSPEIQKILTD-S-NYEFPIR-ND--VELSQTVK 286 (322)
T ss_dssp TCSCHH------------HHHHHHHHHTSHHHHHHHHH-T-TCCEESS-TT--SCCCHHHH
T ss_pred CCCCHH------------HHHHHHHHHhCHHHHHHHHh-c-CcccCCc-cC--CCCcccCC
Confidence 999998 99999999999999999985 3 3345543 22 24555554
No 22
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=99.76 E-value=1.8e-17 Score=152.55 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=114.8
Q ss_pred CCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHH--hhHH-----HHHHHHHHHHhh
Q 036082 14 DPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREV--IGSI-----AVQLNLALLANQ 86 (315)
Q Consensus 14 DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~--~g~a-----~~~~a~~~L~~~ 86 (315)
+.+| |++|+..++.+|+||+++++++ .+|+||+||++++++|++++.+..... +... ...++++.|.++
T Consensus 90 ~~~g--~~~P~~~~~~~l~YNk~~~~~~--~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~a~~~l~~l 165 (309)
T 1nnf_A 90 APKK--DWIALSGRSRVVVYDHTKLSEK--DMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGL 165 (309)
T ss_dssp CTTS--CCEEEEEEEEEEEEETTTCCGG--GSCSSGGGGGSGGGTTTEEECTTSHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCC--eEEEeeeeEEEEEEehhhcccc--CCCCCHHHHhchhhcCeEeecCCCchHHHHHHHHHHhcChHHHHHHHHHH
Confidence 3446 7899999999999999999875 379999999999999999886432111 1111 013445555433
Q ss_pred ---------cHHHHHHHHcCCEEEEEEehhhHHHH-HH---cCCCeEE-EeC---CCceeeeeeEEEeCCCCCcccccCC
Q 036082 87 ---------SAHHLKAFGIGDVWVAVGWSSDVLPA-VK---HMSNVAV-VPK---SGASLWADLWAIPAASRLETKQIGG 149 (315)
Q Consensus 87 ---------~~~~~~~~~~Gev~~~~~ws~~~~~~-~~---~~~~i~~-~Pk---eG~~~~~d~~~I~k~s~~~~~~~~~ 149 (315)
..+..+.|.+|+++|++.|+..+..+ .. .+.++++ +|. +|...+.++++|+++++|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~i~~~s~~~~----- 240 (309)
T 1nnf_A 166 KENGKLYAKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQA----- 240 (309)
T ss_dssp HHHEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHHCGGGCSEEEECCCTTCGGGCEEEEEEEEBTTCSCHH-----
T ss_pred HHhCCCCCCCchHHHHHhcCCccEEEccHHHHHHHHhcccCCCCceEEeCCCCCCCceeeccccEEEEcCCCCHH-----
Confidence 23567889999999999998877665 33 3457886 543 36677888999999999998
Q ss_pred CCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCC
Q 036082 150 RVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPS 185 (315)
Q Consensus 150 ~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~ 185 (315)
+|++||+|++|+|+|..+++ ..+ ..|.
T Consensus 241 -------aA~~fi~~l~s~e~q~~~~~-~~~-~~P~ 267 (309)
T 1nnf_A 241 -------EAQKFVDFLASKKGQEALVA-ARA-EYPL 267 (309)
T ss_dssp -------HHHHHHHHHHSHHHHHHHHH-HSC-CEEC
T ss_pred -------HHHHHHHHHhCHHHHHHHHh-cCC-cccc
Confidence 99999999999999999984 433 3444
No 23
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Probab=99.76 E-value=1.3e-17 Score=154.24 Aligned_cols=166 Identities=16% Similarity=0.114 Sum_probs=121.1
Q ss_pred cCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH---------HHHHHHHHH
Q 036082 13 IDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI---------AVQLNLALL 83 (315)
Q Consensus 13 ~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a---------~~~~a~~~L 83 (315)
.+++|+.|++|+ ++.+|+||+++++++ ++|+||+||++++++|++++.+.. ..++.. ...++++.+
T Consensus 89 ~~~~G~~~~~~~--~~~~l~ynkd~~~~~--~~P~tw~el~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~G~~~a~~~~ 163 (320)
T 1q35_A 89 RDSNDQWFGLTT--RARVIYTSKDRVGKL--PAGFDYLDLAKPEYKGKVCVRSGK-NSYNVSLFAAMIEHYGIEKTKAFL 163 (320)
T ss_dssp BCTTSSCEEEEE--EEEEEEEETTTTCSC--CTTCCGGGGGSGGGTTCEECSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCeEEeeec--ceEEEEEehHHhhhc--CCCCCHHHHhhHHhCCcEEeccCC-CchhHHHHHHHHHhcCHHHHHHHH
Confidence 356799888774 689999999999875 589999999999999999886543 222211 123444444
Q ss_pred Hhh----------c-HHHHHHHHcCCEEEEEEehhhHHHHHH--cC----CCeEE-Ee--CCCceeeeeeEEEeCCCCCc
Q 036082 84 ANQ----------S-AHHLKAFGIGDVWVAVGWSSDVLPAVK--HM----SNVAV-VP--KSGASLWADLWAIPAASRLE 143 (315)
Q Consensus 84 ~~~----------~-~~~~~~~~~Gev~~~~~ws~~~~~~~~--~~----~~i~~-~P--keG~~~~~d~~~I~k~s~~~ 143 (315)
.++ . .+..+.|.+|+++|++.|+..+..+.. .. .++++ +| ++|...+.++++|+++++|+
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~i~~~s~~~ 243 (320)
T 1q35_A 164 EGLKANLARKPQGGDRDQVKAIKEGICDYSIGNSYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSPNK 243 (320)
T ss_dssp HHHHHTBSSCCCSCHHHHHHHHHHTSCSEEEEETHHHHHHHHSTTTHHHHHTEEEECCCSTTCBEEEEEEEEEBTTCTTH
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHCCCccEEeccHHHHHHhhhcccccCCCcceEEecCCCCCCccccceeEEEECCCCCH
Confidence 432 1 256788999999999999876655542 11 46888 89 67888888999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhc
Q 036082 144 TKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLK 200 (315)
Q Consensus 144 ~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~ 200 (315)
+ +|++||+|++|+|.|..+++ ..++ .|.. ..+ ..+++++.
T Consensus 244 ~------------aA~~fi~~l~s~e~q~~~~~-~~~~-~P~~-~~~--~~~~~~~~ 283 (320)
T 1q35_A 244 A------------NAVKLIEYLSGEKAQGLYAE-LNHE-YPVK-EGI--EPSAIVKG 283 (320)
T ss_dssp H------------HHHHHHHHHHSHHHHHHHHH-HHCC-EESS-TTC--CCCHHHHH
T ss_pred H------------HHHHHHHHHhCHHHHHHHhc-cCcc-cCcC-CCC--CCCccCCC
Confidence 8 99999999999999999984 4344 4433 222 34555543
No 24
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=99.76 E-value=1.9e-17 Score=162.74 Aligned_cols=233 Identities=19% Similarity=0.219 Sum_probs=153.1
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecChHHH---hhHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSPREV---IGSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~~~~---~g~a-------------- 74 (315)
||++||||+.+++.+|+||+++|++ +|+||++|++. ++ +|+..+.-..... +.+.
T Consensus 102 dGk~yglP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 177 (475)
T 3n94_A 102 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGK 177 (475)
T ss_dssp TTEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTE
T ss_pred CCEEEEeeeeccceEEEEehHHhcc----CCCCHHHHHHHHHHHHhCCCceEEeecCCchHHHHHHHhcCCceeecCCCC
Confidence 3999999999999999999999985 89999999975 33 4554432211111 1110
Q ss_pred -----------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCC-----
Q 036082 75 -----------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKS----- 125 (315)
Q Consensus 75 -----------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pke----- 125 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|..
T Consensus 178 ~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~ 257 (475)
T 3n94_A 178 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS 257 (475)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCC
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHcCCEEEEecCccccChhhhcCCceEEEeCCCCCCCCC
Confidence 234566655544 13567899999999999999888877777778887 6752
Q ss_pred CceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCC
Q 036082 126 GASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPS 204 (315)
Q Consensus 126 G~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~ 204 (315)
+...+..+++|+++++|++ +|++||+ |++++|+|..+.. ..++..|.. +... +.+.+ .|
T Consensus 258 ~~~~g~~~~~I~~~s~~~e------------~A~~fi~~~l~s~e~~~~~~~-~~~~~~p~~-~~~~----~~~~~-~p- 317 (475)
T 3n94_A 258 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSYE----EELAK-DP- 317 (475)
T ss_dssp CCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEESB-HHHH----HHHTT-CH-
T ss_pred CccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-hCCCCCCch-hhhh----hhhhh-Ch-
Confidence 2345668999999999998 9999996 9999999999985 444444543 2221 22211 11
Q ss_pred CCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCCCcchhHHHHHHHHhhhhhHHHHHHHHHHHhhccc
Q 036082 205 LDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQSITSLVKEASAALYITGCTEMAEVLEVLRETKDE 282 (315)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 282 (315)
.+ ....+.+......+..+ ......+.. .++++..|. .++ +++. ++--+++.+.|.++++.+++
T Consensus 318 ---~~---~~~~~~~~~~~~~p~~p~~~~~~~~~~~-~~~~~~~G~-~t~--eeal----~~~~~~~~~~l~~l~~e~~~ 383 (475)
T 3n94_A 318 ---RI---AATMENAQKGEIMPNIPQMSAFWYAVRT-AVINAASGR-QTV--DEAL----KDAQTNAAAEFAIFKKEQAM 383 (475)
T ss_dssp ---HH---HHHHHHHHHSEECCCSTTHHHHHHHHHH-HHHHHHHTS-SCH--HHHH----HHHHHHHHHSHHHHHHHHHH
T ss_pred ---HH---HHHHHHHhcCccCCCCccHHHHHHHHHH-HHHHHHhCC-CCH--HHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 11 01122333333333332 344456777 888888887 332 2222 34445677778888888899
Q ss_pred hhhh
Q 036082 283 CLFE 286 (315)
Q Consensus 283 ~~~~ 286 (315)
|+..
T Consensus 384 C~~~ 387 (475)
T 3n94_A 384 CLEK 387 (475)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9753
No 25
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=99.75 E-value=1.2e-17 Score=156.17 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=118.3
Q ss_pred CCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH---------HHHHHHHHHH
Q 036082 14 DPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI---------AVQLNLALLA 84 (315)
Q Consensus 14 DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a---------~~~~a~~~L~ 84 (315)
+++|+. +|+.+++.+|+||+++|++. +|+||+||++++++|++.+.+... .++.. ...++++.+.
T Consensus 118 ~~~G~~--~p~~~~~~~l~YNkd~~~~~---~P~tw~dl~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~g~~~a~~~~~ 191 (346)
T 2voz_A 118 HPDGLW--YGFTQRARVLYYSRDRVNPA---DLSTYEALADPQWRGKILVRPSSN-VYNLSLTASRIAIHGEPETRRWLQ 191 (346)
T ss_dssp CTTSSC--EEEEEEEEEEEEETTTCCGG---GCCCSGGGGSGGGTTTEECCCTTS-HHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCCcE--EeeeccceEEEEehhhcCcc---CCCCHHHHhhHHhcCcEEecCCCC-cchHHHHHHHHHhhchHHHHHHHH
Confidence 566875 58888999999999999873 799999999999999998865432 22111 0134444443
Q ss_pred hh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHH------c--CCCeEE-Ee-----CCCceeeeeeEEEeCC
Q 036082 85 NQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVK------H--MSNVAV-VP-----KSGASLWADLWAIPAA 139 (315)
Q Consensus 85 ~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~------~--~~~i~~-~P-----keG~~~~~d~~~I~k~ 139 (315)
++ ..+..+.|.+|+++|++.|+.....+.. . +.++++ +| ++|...+.++++|+++
T Consensus 192 ~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~g~~~~~~~~~i~~~ 271 (346)
T 2voz_A 192 GLVGNFARQPEGNDTAQIRAIAAGIGDVAIANSYYYIRLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKN 271 (346)
T ss_dssp HHHHTBSSSCCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHCCCHHHHHHHHHEEEECCSCSTTSCCBCEEEEEEEEBTT
T ss_pred HHHHhcCccccCCcHHHHHHHHCCCceEEecccHHHHHHhhcccccccCCCCceeEecCCCCCCCCCceecceeEEEeCC
Confidence 32 1256788999999999998866544432 1 246888 88 5788888899999999
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhh
Q 036082 140 SRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELL 199 (315)
Q Consensus 140 s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~ 199 (315)
++|++ +|++||+|+++||.|..+++ ..++ .|.. ..+ ..++++.
T Consensus 272 s~~~~------------aA~~fi~~l~s~e~q~~~~~-~~g~-~P~~-~~~--~~~~~~~ 314 (346)
T 2voz_A 272 APNRD------------AAIAFLEYLASDDAQRYFAE-GNNE-YPVI-PGV--PIDPVLA 314 (346)
T ss_dssp CTTHH------------HHHHHHHHHTSHHHHHHHHH-HTTC-EESS-TTS--CCCHHHH
T ss_pred CCCHH------------HHHHHHHHHcCHHHHHHHHh-ccCc-ccCc-CCC--CCCcccC
Confidence 99998 99999999999999999985 4444 4443 222 3556554
No 26
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=99.74 E-value=3.2e-17 Score=157.13 Aligned_cols=204 Identities=10% Similarity=0.059 Sum_probs=130.4
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecCh------HHHhhH---H--------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSP------REVIGS---I-------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~------~~~~g~---a-------- 74 (315)
+|++|+||+.+++.+|+||+++|+++|+++|+||++|++. ++ +|...+.... ...+.. .
T Consensus 129 ~G~~y~vP~~~~~~~l~Ynkdl~~~~G~~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (415)
T 3oo8_A 129 DGHYYLVPLYNYPWVVFYNKSVFQSKGYEVPASWEAFIALARKMQSDGLVPLAFADKDGWPALGTFDILNLRINGYDYHI 208 (415)
T ss_dssp TSCBCEEEEEECCEEEEEEHHHHHHHTCCCCSBHHHHHHHHHHHHHTTCEEEECCCTTSSTTHHHHHHHHHHHTCHHHHH
T ss_pred CCcEEEEecccceEEEEEeHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCceeecCCCCCcHHHHHHHHHHhccCHHHHH
Confidence 4999999999999999999999999999999999999975 23 3543332111 011110 0
Q ss_pred ------------HHHHHHHHHHhh------------cHHHHHHHHcCCEEEEEEeh-hhHHHHHH-cCCCeEE--EeCC-
Q 036082 75 ------------AVQLNLALLANQ------------SAHHLKAFGIGDVWVAVGWS-SDVLPAVK-HMSNVAV--VPKS- 125 (315)
Q Consensus 75 ------------~~~~a~~~L~~~------------~~~~~~~~~~Gev~~~~~ws-~~~~~~~~-~~~~i~~--~Pke- 125 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++ .....+.. .+.++++ +|..
T Consensus 209 ~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~ 288 (415)
T 3oo8_A 209 KLMKHEVPWTDPGVTKVFDQWRELAAYQQKGANGRTWQDAAKALENKQAGMMFQGSNQVAANYSAKNLPDLDFFVFPAIN 288 (415)
T ss_dssp HHHHTSSCTTSHHHHHHHHHHHHHGGGBCSSGGGCCHHHHHHHHHTTSEEEEEEEHHHHHHHSCTTTGGGEEEECCCBSS
T ss_pred HHHcCCcCCCCHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHcCCeeEEEcccHhhhhcCCccccCCceEEeCCCCC
Confidence 134555655553 13566899999999988877 33332222 2346776 6642
Q ss_pred ---Cc---eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccC-CChhh
Q 036082 126 ---GA---SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVK-LPGEL 198 (315)
Q Consensus 126 ---G~---~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~-l~~e~ 198 (315)
|. ..+.++++|+++++|++ +|.+||+||+++|+|..+++...++.+++ +.+... .++.+
T Consensus 289 ~~~~~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~~l~s~e~q~~~~~~~~g~~P~~--~~~~~~~~~~~~ 354 (415)
T 3oo8_A 289 PQYGTDYMDAPTDGFILPKKGKNAA------------AAKKVLQYIGTAEAEAAFLKTDHWDVGLA--NGLIAPTYNDIQ 354 (415)
T ss_dssp TTTTTCEEECCCEEEECBTTCSCHH------------HHHHHHHHHTSHHHHHHHHTTCSSCEECS--TTCCCTTCCHHH
T ss_pred CCCCCccccccCceEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHhccCCCCCCC--CCCCcccCCHHH
Confidence 22 34568999999999998 99999999999999999984134544433 222111 12211
Q ss_pred hcCCCCCCcccccCCCcHHHhhccc-----cccCCCHHHHHHHHHHHHHhcccCC
Q 036082 199 LKGKPSLDTNLIAGVPPAEILARFE-----FLEPLSEATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 199 ~~~~~~~~~~~~~~~p~~~~~~~~~-----~~~~l~~~~~~~~~~~~W~~ikag~ 248 (315)
+. ..+.+.... +..+..+.....+.. .++++..|+
T Consensus 355 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 394 (415)
T 3oo8_A 355 KK--------------SVAEIGKCKSVSQFMERDTVPDMANAMIK-LIQQFIDQP 394 (415)
T ss_dssp HH--------------HHHHHHHCSEEECCHHHHSCHHHHHHHHH-HHHHHHHSC
T ss_pred HH--------------HHHHHHhCccchhhhhccCCHHHHHHHHH-HHHHHhcCC
Confidence 11 012222211 112345666677888 888888887
No 27
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp}
Probab=99.73 E-value=1.1e-16 Score=154.05 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=110.5
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc----CCceEeecChHHHh---hHH--------
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL----AGRISMVNSPREVI---GSI-------- 74 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~----~Gki~~~d~~~~~~---g~a-------- 74 (315)
.+| |++||||+..++.+|+||+++|++ +|+||+||.+. ++ .+...+.......+ .+.
T Consensus 136 ~~d--Gk~y~vP~~~~~~~l~Ynkdl~~~----~p~Twdel~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~ 209 (420)
T 4hs7_A 136 NYD--NKQLALPAIVETTALFYNKKLVKN----APQTLEEVEANAAKLTDSKKKQYGMLFDAKNFYFNYPFLFGNDDYIF 209 (420)
T ss_dssp EET--TEECEEEEEEECCEEEEETTTCCS----CCCBHHHHHHHHHHHCBTTTTBEEEECCTTSHHHHHHHHCCSSCCSE
T ss_pred eEC--CEEEEEeccccceEEEEEcccccc----ccccchhhHHHHHHHHhccCCceeeccCCCCccchhhhhhhccchhh
Confidence 455 999999999999999999999986 89999999863 22 23444432222111 111
Q ss_pred -----------------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHc-CCCeEE--Ee
Q 036082 75 -----------------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKH-MSNVAV--VP 123 (315)
Q Consensus 75 -----------------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~-~~~i~~--~P 123 (315)
...++++.+.++ .....+.|.+|++.|.+.++..+..+... +.++++ +|
T Consensus 210 ~~~g~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~g~~~~P 289 (420)
T 4hs7_A 210 KKNGSEYDIHQLGLNSKHVVKNAERLQKWYDKGYLPKAATHDVMIGLFKEGKVGQFVTGPWNINEYQETFGKDLGVTTLP 289 (420)
T ss_dssp EESSSCEEEEEECTTCHHHHHHHHHHHHHHHTTSSCSSCCHHHHHHHHHTTCEEEEEECSTTHHHHHHHHGGGEEEECCC
T ss_pred hhccccccccccccCCHHHHHHHHHHHHHHHcCCCCcccccchhhhhhccCceEEEEechHHHHHHHHhcCCceEEEEcc
Confidence 234455555443 23567889999999999988777666543 456777 77
Q ss_pred CCC-----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCC
Q 036082 124 KSG-----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGAS 183 (315)
Q Consensus 124 keG-----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~ 183 (315)
..+ ..++..+++|+++++|++ +|++||+||+++|+|..+++ ..++.+
T Consensus 290 ~~~g~~~~~~~g~~~~~I~~~sk~~e------------aA~~fi~~l~s~e~~~~~~~-~~g~~P 341 (420)
T 4hs7_A 290 TDGGKPMKPFLGVRGWYLSEYSKHKY------------WAKDLMLYITSKDTLQKYTD-EMSEIT 341 (420)
T ss_dssp BSSSSBCCCEEEEEEEEEETTCSCHH------------HHHHHHHHHTSHHHHHHHHH-HHCCCB
T ss_pred CCCCCCCccccccceEEecCCCCCHH------------HHHHHHHHHCCHHHHHHHHH-HhCCCC
Confidence 532 245668899999999998 99999999999999999985 445543
No 28
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=99.72 E-value=7.3e-17 Score=153.37 Aligned_cols=152 Identities=15% Similarity=0.174 Sum_probs=111.9
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcC--cccC-----CceEeecChHHHhh---HH-----------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--PELA-----GRISMVNSPREVIG---SI----------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d--p~~~-----Gki~~~d~~~~~~g---~a----------- 74 (315)
+|++||||+.+++.+|+||+++|++ +|+||++|++ .+++ |++.+..+..+.+. +.
T Consensus 98 dG~~y~vP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~ 173 (382)
T 2gha_A 98 GGKLYGIPYAMEAIALIYNKDYVPE----PPKTMDELIEIAKQIDEEFGGEVRGFITSAAEFYYIAPFIFGYGGYVFKQT 173 (382)
T ss_dssp TTEECCEEEEEECCEEEEETTTCSS----CCSBHHHHHHHHHHHHHHTTTSSEEEECCTTCHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEeeeccceEEEEehhhccC----CchhHHHHHHHHHHHhccCCCCeeeEEecCcchHHHHHHHHhCCCeeeccC
Confidence 3999999999999999999999987 8999999998 3553 66655432211110 00
Q ss_pred --------------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC--C
Q 036082 75 --------------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK--S 125 (315)
Q Consensus 75 --------------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk--e 125 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|. +
T Consensus 174 ~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~~ 253 (382)
T 2gha_A 174 EKGLDVNDIGLANEGAIKGVKLLKRLVDEGILDPSDNYQIMDSMFREGQAAMIINGPWAIKAYKDAGIDYGVAPIPDLEP 253 (382)
T ss_dssp TTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBSBT
T ss_pred CCCccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCccEEEcCHHHHHHHHhcCCceEEEeCCCCCC
Confidence 124555555443 13456789999999999887776666555667887 776 5
Q ss_pred Cc----eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHHHHHHHhhhCCCCCC
Q 036082 126 GA----SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWI-EFCLQTARALPFKQEVIPGASP 184 (315)
Q Consensus 126 G~----~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~e~~~~~~P 184 (315)
|. ..+..+++|+++++|++ +|++|| +||+++|.|..+.+ ..++.++
T Consensus 254 g~~~~~~~~~~~~~i~~~s~~~e------------~A~~fi~~~l~s~e~~~~~~~-~~g~~P~ 304 (382)
T 2gha_A 254 GVPARPFVGVQGFMVNAKSPNKL------------LAIEFLTSFIAKKETMYRIYL-GDPRLPS 304 (382)
T ss_dssp TBCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTTSHHHHHHHHH-HSCSEES
T ss_pred CCCCcccccceEEEEeCCCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCCCC
Confidence 53 35567899999999998 999999 99999999999884 4555433
No 29
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=99.72 E-value=1.1e-16 Score=148.24 Aligned_cols=161 Identities=13% Similarity=0.125 Sum_probs=115.1
Q ss_pred CCCCCeEeeeeeeceEEEEEecc-cccccCCCCCCChHhhcCcccCCceEeecChHHH----hhHH--H--HHHHHHHHH
Q 036082 14 DPRGKICAAPYRWGTVVIAYKKS-KFRKHNLAPIEDWKDLWRPELAGRISMVNSPREV----IGSI--A--VQLNLALLA 84 (315)
Q Consensus 14 DpdG~~Y~vP~~~g~~gi~YN~d-~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~----~g~a--~--~~~a~~~L~ 84 (315)
+++| |++|+.+++.+|+||++ +|++ | ||+||++++++|++.+.+..... +... . -+++++.+.
T Consensus 94 ~~~g--~~~p~~~~~~~l~yNkd~~~~~-----P-tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G~~~a~~~~~ 165 (323)
T 1y9u_A 94 GAEG--SWYALSLRDRVLYVEKDLKLDS-----F-RYGDLADPKWKGKVCIRSGQHPYNTALVAAMIAHDGAEATEKWLR 165 (323)
T ss_dssp CGGG--SCEEEEEEEEEEEEETTCCCCC-----C-BGGGGGCGGGTTCEECCCTTSHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCC--eEEEEecceeEEEEcCccccCC-----C-CHHHHhhHHhCCcEeecCCCcHhHHHHHHHHHHHhChHHHHHHHH
Confidence 4556 89999999999999999 9975 6 99999999999999876532211 1100 0 123444433
Q ss_pred hh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHH-------cC--CCeEE-Ee------CCCceeeeeeEEEe
Q 036082 85 NQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVK-------HM--SNVAV-VP------KSGASLWADLWAIP 137 (315)
Q Consensus 85 ~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~-------~~--~~i~~-~P------keG~~~~~d~~~I~ 137 (315)
++ ..+..+.|.+|+++|++.|+..+..+.. .+ .++.+ +| ++|...+..+++|+
T Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~i~ 245 (323)
T 1y9u_A 166 GVKANLARKAAGGDRDVARDILGGICDIGLANAYYVGHMKNAEPGTDARKWGDAIKVVRPTFATAKDGGTHVNISGAAVA 245 (323)
T ss_dssp HHHHHBSSCSCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHSCTTSHHHHHHHTEEEECCBCC----CCBCEEEEEEEEE
T ss_pred HHHHccCcccCCCchHHHHHHhCCcceEEEecHHHHHHHhhccccccccCCCCceeEecCCCCCCCCCCeeeccceEEEE
Confidence 22 1256788999999999999877655543 12 35777 88 56788888999999
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhh
Q 036082 138 AASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELL 199 (315)
Q Consensus 138 k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~ 199 (315)
++++|++ +|++||+||+|+|.|..+++ ..++ .|.. ..+ .+++.+.
T Consensus 246 ~~s~~~~------------~A~~fi~fl~s~e~q~~~~~-~~~~-~P~~-~~~--~~~~~~~ 290 (323)
T 1y9u_A 246 AHAPNKA------------NAVKLLEYLVSEPAQTLYAQ-ANYE-YPVR-AGV--KLDAVVA 290 (323)
T ss_dssp TTCTTHH------------HHHHHHHHHTSHHHHHHHHH-HTTC-EESS-TTC--CCCHHHH
T ss_pred cCCCCHH------------HHHHHHHHHcCHHHHHHHHh-cccc-ccCC-CCC--CCCccCC
Confidence 9999998 99999999999999999984 4343 4443 222 4555554
No 30
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=99.71 E-value=1.7e-16 Score=158.27 Aligned_cols=202 Identities=19% Similarity=0.214 Sum_probs=133.9
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecChHHH---hhHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSPREV---IGSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~~~~---~g~a-------------- 74 (315)
||++||||+.+++.+|+||+++|++ +|+||+||++. ++ +|+..+.-+..+. +.+.
T Consensus 101 dGk~YglP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 176 (523)
T 3py7_A 101 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGK 176 (523)
T ss_dssp TTEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTE
T ss_pred CCEEEEEeeeccceEEEEEhHHhhc----CCCCHHHHHHHHHHHHhCCCceeEeecCchHHHHHHHHhhCcceecccccc
Confidence 3999999999999999999999985 89999999985 33 3554432111111 1110
Q ss_pred -----------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCC-C---
Q 036082 75 -----------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKS-G--- 126 (315)
Q Consensus 75 -----------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pke-G--- 126 (315)
...++++.+.++ ..+..+.|.+|+++|.+.|+..+..+.+.+.++++ +|.. |
T Consensus 177 ~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~ 256 (523)
T 3py7_A 177 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPS 256 (523)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHSSCCEEEECCCEETTEEC
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHhcCCEEEEecCCcchhHHHhcCCceeEEECCCCCCCCC
Confidence 234566655543 13567899999999999999888888777778887 6742 2
Q ss_pred -ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCC
Q 036082 127 -ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPS 204 (315)
Q Consensus 127 -~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~ 204 (315)
...+..+++|+++++|++ +|.+||+ |++++|+|..+.. ..++..|.. +.. .+.+.+ .
T Consensus 257 ~~~~g~~~~~I~~~sk~~e------------aA~~fi~~~l~s~e~q~~~~~-~~~~~~p~~-~~~----~~~~~~-~-- 315 (523)
T 3py7_A 257 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSY----EEELAK-D-- 315 (523)
T ss_dssp CCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCEESB-HHH----HHHHTT-S--
T ss_pred CccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHhh-cCCCCCCcc-hhh----hhhhhh-C--
Confidence 345668999999999998 9999996 9999999999985 445444543 221 122211 1
Q ss_pred CCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCC
Q 036082 205 LDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~ 248 (315)
+.+ ....+.+......+..+ ......+.+ .++++..|.
T Consensus 316 --p~~---~~~~~~~~~~~~~p~~p~~~~~~~~~~~-~i~~~~~G~ 355 (523)
T 3py7_A 316 --PRI---AATMENAQKGEIMPNIPQMSAFWYAVRT-AVINAASGR 355 (523)
T ss_dssp --HHH---HHHHHHHHTSEECCCSTTHHHHHHHHHH-HHHHHHHTS
T ss_pred --hHH---HHHHHHHhcCccCCCCccHHHHHHHHHH-HHHHHHcCC
Confidence 111 11123333334333333 334456777 888888887
No 31
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=99.71 E-value=4.4e-16 Score=153.66 Aligned_cols=204 Identities=18% Similarity=0.197 Sum_probs=134.9
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecChHHH---hhHH----------
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSPREV---IGSI---------- 74 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~~~~---~g~a---------- 74 (315)
.+| |++||||+.+++.+|+||+++|++ +|+||++|++. ++ +|...+.-..... +.+.
T Consensus 112 ~~d--Gk~YglP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 185 (471)
T 3mq9_A 112 RYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKY 185 (471)
T ss_dssp EET--TEECEEEEEEEECEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHGGGTCEEEEE
T ss_pred EEC--CEEEEEeeeccceEEEEEhHHhcC----CCCCHHHHHHHHHHHHhCCCceEEecCCchHHHHHHHHhcCCeeecc
Confidence 455 999999999999999999999985 89999999975 33 3544432111111 1110
Q ss_pred ---------------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCC-
Q 036082 75 ---------------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKS- 125 (315)
Q Consensus 75 ---------------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pke- 125 (315)
...++++.+.++ ..+..+.|.+|+++|.+.|+..+..+...+.++++ +|..
T Consensus 186 ~~~~~d~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~ 265 (471)
T 3mq9_A 186 ENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFK 265 (471)
T ss_dssp CSSCEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHTTTCCEEEECCCBBT
T ss_pred CCCccccCCcCcCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHcCCeEEEEecchhhHHHHhcCCCEEEEECCCCC
Confidence 234566655544 13567899999999999999888877777778887 6752
Q ss_pred ----CceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhc
Q 036082 126 ----GASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALESTLVKLPGELLK 200 (315)
Q Consensus 126 ----G~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~ 200 (315)
+...+..+++|+++++|++ +|++||+ |++++|+|..+.. ..++..|.. .... +.+..
T Consensus 266 g~~~~~~~g~~~~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~-~~~~~~p~~-~~~~----~~~~~ 327 (471)
T 3mq9_A 266 GQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSYE----EELAK 327 (471)
T ss_dssp TBCCCCEEEEEEEEEBSSCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCSBSB-HHHH----HHHTT
T ss_pred CCCCcceecceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-cCCCCCCch-hhHH----Hhhhc
Confidence 2345668999999999998 9999995 9999999999985 445445543 2221 22211
Q ss_pred CCCCCCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCC
Q 036082 201 GKPSLDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 201 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~ 248 (315)
. +.+ ....+.+......+..+ ......+.. .++++..|.
T Consensus 328 -~----p~~---~~~~~~~~~~~~~p~~p~~~~~~~~~~~-~~~~vl~G~ 368 (471)
T 3mq9_A 328 -D----PRI---AATMENAQKGEIMPNIPQMSAFWYAVRT-AVINAASGR 368 (471)
T ss_dssp -S----HHH---HHHHHHHHTSEECCCSTTHHHHHHHHHH-HHHHHHHSS
T ss_pred -C----hhH---HHHHHHhccCccCCCCccHHHHHHHHHH-HHHHHHcCC
Confidence 1 111 01122333333333333 344456777 888898887
No 32
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A*
Probab=99.71 E-value=5.1e-16 Score=148.07 Aligned_cols=152 Identities=14% Similarity=0.155 Sum_probs=111.2
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcC--cccC----CceEeecChHHHh---hHH------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--PELA----GRISMVNSPREVI---GSI------------ 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d--p~~~----Gki~~~d~~~~~~---g~a------------ 74 (315)
||++||||+..++.+|+||+++|++ +|+||++|++ .+++ |+..+.....+.+ .+.
T Consensus 118 dG~~y~~P~~~~~~~l~Ynkdl~~~----~P~Twdel~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 193 (397)
T 2zyo_A 118 GGKLYGLPKAIESVALIYNKKLMGQ----VPATYDELFQYAKANNKPDEQKYGVLFEANNFYYTYFLFAAKGAAVFKEQD 193 (397)
T ss_dssp TTEECEEEEEEECCEEEEETTTCSS----CCSBHHHHHHHHHHHCBGGGTBEEEEECTTCHHHHHHHHHHTTCCSEEEET
T ss_pred CCEEEEecccccceEEEEehhhhcC----CCCCHHHHHHHHHHHhcCCCCeeeEEEecCcHHHHHHHHHhcCCeEEccCc
Confidence 3999999999999999999999987 8999999998 3555 6654432211111 000
Q ss_pred -------------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-CCc
Q 036082 75 -------------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-SGA 127 (315)
Q Consensus 75 -------------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-eG~ 127 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|. +|.
T Consensus 194 ~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~~~~P~~~g~ 273 (397)
T 2zyo_A 194 GTLDPNEIGLNSPEAVQGMNEVQKWFTEARLPQSLKADTVNGLFKSGKVAAVINGPWAIKDYQAAGINVGVAPLPKIDGK 273 (397)
T ss_dssp TEEEEEEECTTSHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTB
T ss_pred cCCCcCCcccCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCeeEEEcCCccHHHHHhcCcceEEEecCCCCCC
Confidence 234555555443 13456889999999999888777666655668887 776 443
Q ss_pred ----eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCC
Q 036082 128 ----SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (315)
Q Consensus 128 ----~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P 184 (315)
..+..+++|+++++|++ +|.+||+||+++|.|..++. ..++.++
T Consensus 274 ~~~~~~~~~~~~i~~~s~~~e------------~A~~fi~~l~s~e~~~~~~~-~~g~~P~ 321 (397)
T 2zyo_A 274 DAQTFIGVKGWYLSAYSKYPK------------YATELMQFLTSKEALASRFK-ETGEIPP 321 (397)
T ss_dssp CCCCEEEEEEEEEETTCSCHH------------HHHHHHHHTTSHHHHHHHHH-HHCCBCC
T ss_pred CCcceecceEEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHH-HcCCCCC
Confidence 34467899999999998 99999999999999999885 4454433
No 33
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=99.71 E-value=1.5e-17 Score=158.96 Aligned_cols=158 Identities=14% Similarity=0.147 Sum_probs=109.0
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCC-CCCChHhhcCc--cc--CCceEeecCh---HH--Hh--------hHH---
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLA-PIEDWKDLWRP--EL--AGRISMVNSP---RE--VI--------GSI--- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~-~P~SW~dL~dp--~~--~Gki~~~d~~---~~--~~--------g~a--- 74 (315)
+|++||||+..++.+|+||+++|+++|++ +|+||+||++. ++ +|...+.... .. .+ +..
T Consensus 113 dG~~y~~P~~~~~~~l~Ynkdl~~~~G~~~~P~Twdel~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 192 (405)
T 3i3v_A 113 EGRVRAFPYFATNWPVAYNRALLDRAGVDAIPTTGDQLIAAARKLRAKGIAPVTVGGNDWTGQKLLAQIIQTFLSQDEAR 192 (405)
T ss_dssp TSCBCSBCCEEEEECEEEEHHHHHHHTCCSCCCBHHHHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHGGGCCHHHHH
T ss_pred CCcEEEEeccCceEEEEEeHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCCchHHHHHHHHHHccChHHHH
Confidence 38999999999999999999999999998 99999999874 33 3543332111 00 00 000
Q ss_pred -----------HHHHHHHHHHhh--------------cHHHHHHHHcCCEEEEEEehhhHHHHHH-cCCCeEE--Ee--C
Q 036082 75 -----------AVQLNLALLANQ--------------SAHHLKAFGIGDVWVAVGWSSDVLPAVK-HMSNVAV--VP--K 124 (315)
Q Consensus 75 -----------~~~~a~~~L~~~--------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~-~~~~i~~--~P--k 124 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+.. ..+++++ +| .
T Consensus 193 ~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 272 (405)
T 3i3v_A 193 HVYSTGDFGVRGARLGIEYFAHLRDAGVFADKAQGLTSDSMTTQFNTEEAAVQSAMSSALAKVPEKVAGHTEVGGWPLAD 272 (405)
T ss_dssp HHHHHTCTTSHHHHHHHHHHHHHHHTTCBCTTGGGCCHHHHHHHHHTTSEEEEECCHHHHTTSCHHHHHTEEEECBCBCT
T ss_pred HhhcCCCCCCHHHHHHHHHHHHHHHCCCcCCCcccCCHHHHHHHHhcCCeEEEEeCcEehhhhhhccccCCcEEeCCCCC
Confidence 123455555443 1356789999999999988776554432 2345665 55 2
Q ss_pred -CCc--eeee-----eeEEEeCCC-CCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCc
Q 036082 125 -SGA--SLWA-----DLWAIPAAS-RLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSA 186 (315)
Q Consensus 125 -eG~--~~~~-----d~~~I~k~s-~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~ 186 (315)
.+. ..+. .+++|++++ +|++ +|.+||+||+++|+|..+++ ..++..|..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~i~~~s~~~~e------------~A~~fl~~l~s~e~q~~~~~-~~g~~~P~~ 330 (405)
T 3i3v_A 273 GAAHDGPTVIRAYTLIGFWISPNGVRKIE------------QVEKFLRFMYRPDVVARFVT-ESGRDMALR 330 (405)
T ss_dssp TCSSSSCEEEEESCSSEEEECHHHHTTHH------------HHHHHHHHHTSHHHHHHHHH-HHCCEESBC
T ss_pred CCCCCCCceEeccCceEEEEeCCchhhHH------------HHHHHHHHHhCHHHHHHHHH-hcCCcCCcc
Confidence 222 2222 569999999 9998 99999999999999999985 445524543
No 34
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=99.70 E-value=2.1e-16 Score=154.28 Aligned_cols=206 Identities=18% Similarity=0.194 Sum_probs=134.7
Q ss_pred CCCcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecChHHH---hhH---------
Q 036082 10 AGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSPREV---IGS--------- 73 (315)
Q Consensus 10 ~~~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~~~~---~g~--------- 73 (315)
...+| |++||||+.+++.+|+||+++|++ +|+||+||++. ++ +|+..+.-...+. +.+
T Consensus 96 ~~~~d--Gk~ygvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~ 169 (449)
T 3iot_A 96 AVRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAF 169 (449)
T ss_dssp TSBSS--SCBCCEEEEEEECEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCBSCCCCCSCHHHHHHHHTTTTCBSS
T ss_pred hceEC--CEEEEeccccceeEEEEehHHhcc----CCCCHHHHHHHHHHHHhCCCceEEeecCchHHHHHHHHhhCCeee
Confidence 34455 999999999999999999999985 89999999975 33 3443221111000 000
Q ss_pred ----------------HHHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC
Q 036082 74 ----------------IAVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK 124 (315)
Q Consensus 74 ----------------a~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk 124 (315)
....++++.+.++ ..+..+.|.+|+++|.+.|+..+..+...+.++++ +|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~P~ 249 (449)
T 3iot_A 170 KYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPT 249 (449)
T ss_dssp EECSSCEETTCCBSSSHHHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHTTCBSEEEECGGGHHHHHHHTCCEEEECCCE
T ss_pred ccccccccccccccCCHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHcCCeeEEeccccchhhHHhcCCceeEEeCCC
Confidence 0234566655543 13467899999999999998888777777778887 674
Q ss_pred C-C----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhh
Q 036082 125 S-G----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWI-EFCLQTARALPFKQEVIPGASPSALESTLVKLPGEL 198 (315)
Q Consensus 125 e-G----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~ 198 (315)
. | ...+..+++|+++++|++ +|.+|| |||+++|++..+.. ..++..|.. +... +.+
T Consensus 250 ~~~~~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~~~l~s~e~~~~~~~-~~~~~~p~~-~~~~----~~~ 311 (449)
T 3iot_A 250 FKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSYE----EEL 311 (449)
T ss_dssp ETTEECCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEESB-HHHH----HHH
T ss_pred CCCCCCCceeceeEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-hcccCCcch-hhhh----hhh
Confidence 2 2 345668999999999998 999999 59999999999985 445444543 2221 222
Q ss_pred hcCCCCCCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCC
Q 036082 199 LKGKPSLDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 199 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~ 248 (315)
.+ . +.+ ....+.+........++ ......+.. .+.++..|.
T Consensus 312 ~~-~----p~~---~~~~~~~~~~~~~p~~p~~~~~~~~~~~-~~~~~~~G~ 354 (449)
T 3iot_A 312 AK-D----PRI---AATMENAQKGEIMPNIPQMSAFWYAVRT-AVINAASGR 354 (449)
T ss_dssp TT-S----HHH---HHHHHHHHHSEECCCSTHHHHHHHHHHH-HHHHHHHTS
T ss_pred hh-C----hhH---HHHHHHHhcCccCCCCccHHHHHHHHHH-HHHHHHcCC
Confidence 11 1 111 01123333344333333 234456777 888898887
No 35
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=99.70 E-value=1.3e-16 Score=165.78 Aligned_cols=233 Identities=19% Similarity=0.213 Sum_probs=147.4
Q ss_pred CCcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecC---hHHHhhHH---------
Q 036082 11 GEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNS---PREVIGSI--------- 74 (315)
Q Consensus 11 ~~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~---~~~~~g~a--------- 74 (315)
..+| |++||||+.+++.+|+||+|+|++ +|+||+||++. ++ +|+..+.-. ....+.+.
T Consensus 98 ~~~d--Gk~YgvP~~~~~~~l~YNkdlf~e----~P~TWdEl~~~akklk~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~ 171 (715)
T 4h1g_A 98 VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFK 171 (715)
T ss_dssp TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEE
T ss_pred cEEC--CEEEEEEEecceEEEEEEhHHhcC----CCCCHHHHHHHHHHHHhcCCCceeccCCchHHHHHHHHhhCCceec
Confidence 3455 999999999999999999999986 89999999864 33 354433211 11111111
Q ss_pred ----------------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-
Q 036082 75 ----------------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK- 124 (315)
Q Consensus 75 ----------------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk- 124 (315)
...++++.+.++ .....+.|.+|+++|.+.|+..+..+...+.++++ +|.
T Consensus 172 ~~~g~~~~~~~~~~s~~~~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~Am~~~g~w~~~~~~~~~~~~gva~lP~~ 251 (715)
T 4h1g_A 172 YENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTF 251 (715)
T ss_dssp ECSSSEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECCCEE
T ss_pred ccCCcccccccccCCHHHHHHHHHHHHHHHcCCCCcchhhhhHHHHhhcCceEEEEecHHHHHHHHhcCCCeEEEEcCCC
Confidence 234566665543 23456789999999999998888888777788887 663
Q ss_pred ----CCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhh
Q 036082 125 ----SGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALESTLVKLPGELL 199 (315)
Q Consensus 125 ----eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~ 199 (315)
.+..++..+++|+++++|++ +|++||+ |++++|.|..+.. ..++ +|.... + ..+++.
T Consensus 252 ~g~~~~~~~g~~~~~I~~~Skn~e------------aA~~Fl~~~l~s~e~q~~~~~-~~~~-~p~~~~-~---~~~~~~ 313 (715)
T 4h1g_A 252 KGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPL-GAVALK-S---YEEELA 313 (715)
T ss_dssp TTEECCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCC-SEESBH-H---HHHHHT
T ss_pred CCCCCcceeeeEEEEEECCCCcHH------------HHHHHHHHHhCCHHHHHHHHH-cCCC-Cccchh-h---hhhhhh
Confidence 22456678999999999998 9999996 7889999999985 4443 333211 1 112222
Q ss_pred cCCCCCCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCCCcchhHHHHHHHHhhhhhHHHHHHHHHHH
Q 036082 200 KGKPSLDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQSITSLVKEASAALYITGCTEMAEVLEVLR 277 (315)
Q Consensus 200 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 277 (315)
+ . +.+ ..-.+.+......+..+ .+....+.. ..+++..|+ .++ ++...+++++...+.
T Consensus 314 ~-d----p~~---~~~~e~~~~a~~~P~~p~~~~v~~~l~~-al~~vl~G~-~tp----------eeAL~~Aq~~~~~il 373 (715)
T 4h1g_A 314 K-D----PRI---AATMENAQKGEIMPNIPQMSAFWYAVRT-AVINAASGR-QTV----------DAALAAAQTNAAALK 373 (715)
T ss_dssp T-C----HHH---HHHHHHHHHSEECCCSTTHHHHHHHHHH-HHHHHHTTS-SCH----------HHHHHHHHHHHSSSS
T ss_pred h-C----hHH---HHHHHHHhcCeeCCCCCchHHHHHHHHH-HHHHHHcCC-CCH----------HHHHHHHHHHHHHHH
Confidence 2 1 111 00123333333332222 223334555 667777887 343 333446666666666
Q ss_pred hhccchhhhcccccchhhh
Q 036082 278 ETKDECLFEQSCCQSCRVR 296 (315)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~ 296 (315)
++.+ -.||+|
T Consensus 374 ~~~r---------V~~~~~ 383 (715)
T 4h1g_A 374 GNIR---------VFCRIR 383 (715)
T ss_dssp CSEE---------EEEEEC
T ss_pred hcCe---------EEEEEe
Confidence 6654 358888
No 36
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=99.70 E-value=5.8e-16 Score=147.11 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=109.6
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--ccC--C--ceEeecC--hHHHhhHH---------
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--G--RISMVNS--PREVIGSI--------- 74 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~--G--ki~~~d~--~~~~~g~a--------- 74 (315)
.+| |++||||+.+++.+|+||+++|++ +|+||++|++. +++ | ++.+... ....+.+.
T Consensus 103 ~~d--Gk~ygvP~~~~~~~l~YNkdlf~~----~P~Twdel~~~a~~l~~~~~~~~g~~~~~~~~~~~~~~~~~Gg~~~~ 176 (381)
T 1elj_A 103 QYK--GHYYALPFAAETVAIIYNKEMVSE----PPKTFDEMKAIMEKYYDPANEKYGIAWPINAYFISAIAQAFGGYYFD 176 (381)
T ss_dssp EET--TEECEEEEEEEECEEEEETTTCSS----CCSSHHHHHHHHHHHCBGGGTBCSCBCCCSHHHHHHHHTTTSCCSEE
T ss_pred EEC--CEEEEeccccceeEEEEehHhhcc----CcccHHHHHHHHHHhcCCCCCeEEEEccCchHHHHHHHHhcCCeeec
Confidence 455 999999999999999999999987 89999999863 221 2 2322211 11111010
Q ss_pred -----------HHHHHHHHHHhh----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC---CC--
Q 036082 75 -----------AVQLNLALLANQ----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK---SG-- 126 (315)
Q Consensus 75 -----------~~~~a~~~L~~~----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk---eG-- 126 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|. +|
T Consensus 177 ~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~g~~~~P~~~~~g~~ 256 (381)
T 1elj_A 177 DKTEQPGLDKPETIEGFKFFFTEIWPYMAPTGDYNTQQSIFLEGRAPMMVNGPWSINDVKKAGINFGVVPLPPIIKDGKE 256 (381)
T ss_dssp TTTTEECTTSHHHHHHHHHHHHHTGGGSCSCCCHHHHHHHHHTTSSSEEEECGGGHHHHHHTTCCEEEECCCCEEETTEE
T ss_pred CCCCccCCCCHHHHHHHHHHHHHhhccCCCCCChhHHHHHHhcCCeeEEecCchhhhHHHhcCCceeEEeCCCcCCCCcc
Confidence 124555555443 12456789999999999887777666655678887 774 45
Q ss_pred ----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhc-HHHHHHHHhhhCCCCCCC
Q 036082 127 ----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQ-TARALPFKQEVIPGASPS 185 (315)
Q Consensus 127 ----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInflls-pe~q~~~~~e~~~~~~P~ 185 (315)
...+..+++|+++++|++ +|++||+|+++ ||.|..+.. ..++.+++
T Consensus 257 ~~~~~~~g~~~~~i~~~s~~~e------------~A~~fi~~l~~~~e~~~~~~~-~~g~~P~~ 307 (381)
T 1elj_A 257 YWPRPYGGVKLIYFAAGIKNKD------------AAWKFAKWLTTSEESIKTLAL-ELGYIPVL 307 (381)
T ss_dssp ECCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHHHHCHHHHHHHHH-HHCCBCCB
T ss_pred CCCCccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCCCCc
Confidence 234567899999999998 99999999999 999998884 44654443
No 37
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=99.69 E-value=2.4e-16 Score=160.35 Aligned_cols=217 Identities=19% Similarity=0.226 Sum_probs=138.0
Q ss_pred CCcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecC---hHHHhhHH---------
Q 036082 11 GEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNS---PREVIGSI--------- 74 (315)
Q Consensus 11 ~~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~---~~~~~g~a--------- 74 (315)
..+| |++||||+.+++.+|+||+++|++ +|+||+||.+. ++ +|+..+.-. ....+.+.
T Consensus 111 ~~~d--Gk~YgvP~~~~~~~l~YNkdlf~e----~P~TwdEl~~~akklk~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~ 184 (602)
T 4b3n_A 111 VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFK 184 (602)
T ss_dssp TEET--TEECEEEEEEECCEEEEETTTCSS----CCSBTTHHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEEEE
T ss_pred cEEC--CEEEEEEEecceEEEEEEhHHhcC----CCCCHHHHHHHHHHHhhcCCcccccCCcchhhHHHHHHhcCCceee
Confidence 3455 999999999999999999999986 89999999864 22 344333211 11111111
Q ss_pred ----------------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-
Q 036082 75 ----------------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK- 124 (315)
Q Consensus 75 ----------------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk- 124 (315)
...++++.+.++ .....+.|.+|+++|.+.++..+..+...+.++++ +|.
T Consensus 185 ~~~g~~~~~~~~~~~~~~~~al~~l~~l~~~g~~~~~~~~~~~~~~f~~Gk~Am~~~g~w~~~~~~~~~~~~gv~~lP~~ 264 (602)
T 4b3n_A 185 YENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTF 264 (602)
T ss_dssp EETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCEE
T ss_pred ccCCcccccccccCCHHHHHHHHHHHHHHHcCCCCcccchhhHHHHhhcCceEEEEecHHHHHHHHhcCCCeEEEEcCCC
Confidence 234556655543 23456789999999999998888877777888887 663
Q ss_pred ----CCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhh
Q 036082 125 ----SGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALESTLVKLPGELL 199 (315)
Q Consensus 125 ----eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~ 199 (315)
.+..++..+++|+++|+|++ +|++||+ |++++|.|..+.. ..++ .|.... + ..+++.
T Consensus 265 ~g~~~~~~~g~~~~~I~~~Skn~e------------aA~~Fl~~~l~s~e~~~~~~~-~~~~-~p~~~~-~---~~~~~~ 326 (602)
T 4b3n_A 265 KGQPSKPFVGVLSAGIDAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPL-GAVALK-S---YEEELA 326 (602)
T ss_dssp TTEECCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCC-SEESBH-H---HHHHHT
T ss_pred CCCCCcceEeeEEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHH-cCCC-Cccchh-h---hhhhhh
Confidence 23456678999999999998 9999996 7888999999985 4443 333211 1 112222
Q ss_pred cCCCCCCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCC-CcchhHHHHHHH
Q 036082 200 KGKPSLDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQ-SITSLVKEASAA 260 (315)
Q Consensus 200 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~-~~~~~~~~~~a~ 260 (315)
+ . +.+ ..-.+.+......+..+ .+....+.. ..+++..|+ +...+.+++.++
T Consensus 327 ~-d----p~~---~~~~e~~~~a~~~P~~p~~~~i~~~l~~-~l~~vl~G~~tpeeAl~~aq~~ 381 (602)
T 4b3n_A 327 K-D----PRI---AATMENAQKGEIMPNIPQMSAFWYAVRT-AVINAASGRQTVDEALKDAQTR 381 (602)
T ss_dssp T-S----HHH---HHHHHHHHHSEECCCSTTHHHHHHHHHH-HHHHHHTTSSCHHHHHHHHHHH
T ss_pred h-C----hHH---HHHHHHHhhCeecCCCCCHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHH
Confidence 1 1 111 00123333333332222 233445566 777888886 555556655554
No 38
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=99.69 E-value=2.7e-16 Score=159.13 Aligned_cols=234 Identities=18% Similarity=0.212 Sum_probs=151.5
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecChHH---HhhHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSPRE---VIGSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~~~---~~g~a-------------- 74 (315)
||++||+|+.+++.+++||++++++ +|+||++|++. ++ +|...+.-.... .+.+.
T Consensus 100 dGk~YgvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~kl~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~ 175 (568)
T 3h4z_A 100 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGK 175 (568)
T ss_dssp TTEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEEEEeccCceEEEEEhHHhhC----CCCCHHHHHHHHHHHHhCCCceEEEecCchHHHHHHHHHcCCceeecCCCc
Confidence 3999999999999999999999985 89999999985 33 355443211111 11110
Q ss_pred -----------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCC-C---
Q 036082 75 -----------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKS-G--- 126 (315)
Q Consensus 75 -----------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pke-G--- 126 (315)
...++++.+.++ ..+..+.|.+|+++|.+.|+..+......+.++++ +|.. |
T Consensus 176 ~~~~~~~~~~~~~~~al~~l~~l~~~G~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~ 255 (568)
T 3h4z_A 176 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPS 255 (568)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHTSSCCEEEECCCEETTEEC
T ss_pred cccCccccCCHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHcCCeEEEEEChhHHHHHHhcCCCEEEEECCCCCCCCc
Confidence 234566655543 13567899999999999999888887777778887 6742 2
Q ss_pred -ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCC
Q 036082 127 -ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPS 204 (315)
Q Consensus 127 -~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~ 204 (315)
...+..+++|+++++|++ +|++||+ |+++||.|..+.. ..++..|.. +... +.+.+ .|
T Consensus 256 ~~~~g~~~~~I~~~skn~e------------aA~~Fl~~fl~s~e~q~~~~~-~~~~~~p~~-~~~~----~~~~~-~p- 315 (568)
T 3h4z_A 256 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSYE----EELAK-DP- 315 (568)
T ss_dssp CCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEESB-HHHH----HHGGG-CH-
T ss_pred cceecceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hCCCCCCcc-hhHH----HHHhh-Ch-
Confidence 245668999999999998 9999997 9999999999985 445545543 2221 22221 11
Q ss_pred CCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCC-CcchhHHHHHHHH------hhhhhHHHHHHHHH
Q 036082 205 LDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQ-SITSLVKEASAAL------YITGCTEMAEVLEV 275 (315)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~-~~~~~~~~~~a~~------~~~~~~~~~~~~~~ 275 (315)
.+ ....+.+......+.++ ......+.. .++++..|. +..++.+++.++. +++-+.++.++|..
T Consensus 316 ---~~---~~~~~~~~~~~~~p~~p~~~~i~~~l~~-~l~~vl~G~~~~eeAl~~~~~~~~~~~~~~d~i~~~~~~~~d~ 388 (568)
T 3h4z_A 316 ---RI---AATMENAQKGEIMPNIPQMSAFWYAVRT-AVINAASGRQTVDAALAAAQTNAAADPIHYDKITEEINKAVDE 388 (568)
T ss_dssp ---HH---HHHHHHHHHSEECCCCTTHHHHHHHHHH-HHHHHHHTSSCHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHH
T ss_pred ---hH---HHHHHHHhcCccCCCCCchhHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHH
Confidence 11 11123334444443333 334456777 888888888 4444444444431 33344567777777
Q ss_pred HHhhc
Q 036082 276 LRETK 280 (315)
Q Consensus 276 ~~~~~ 280 (315)
.++..
T Consensus 389 ~~~~~ 393 (568)
T 3h4z_A 389 AVAAI 393 (568)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
No 39
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.69 E-value=2.9e-16 Score=151.14 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=111.3
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcC--cccC--CceEeecChHHHh---hHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPREVI---GSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d--p~~~--Gki~~~d~~~~~~---g~a-------------- 74 (315)
||++||||+.+++.+|+||+++|++ +|+||+||++ .+++ |++.+.....+.+ .+.
T Consensus 100 dG~~y~vP~~~~~~~l~Ynkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~ 175 (421)
T 1mh3_A 100 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGK 175 (421)
T ss_dssp TTEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCeEEEeeeeccceEEEEehhhccC----CCCCHHHHHHHHHHHhcCCCCceeecCCchHHHHHHHHhcCCeeeccccCC
Confidence 3999999999999999999999987 8999999998 4554 6655432211111 000
Q ss_pred -----------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-CC---
Q 036082 75 -----------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-SG--- 126 (315)
Q Consensus 75 -----------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-eG--- 126 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|. +|
T Consensus 176 ~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~ 255 (421)
T 1mh3_A 176 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS 255 (421)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCC
T ss_pred CCccCccCCCHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHCCCeeEEEeCchhHHHHhhcCCCeeEEeCCCCCCCCC
Confidence 124555555433 13466889999999999888777666666678887 775 33
Q ss_pred -ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHHHHHHHhhhCCCCC
Q 036082 127 -ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWI-EFCLQTARALPFKQEVIPGAS 183 (315)
Q Consensus 127 -~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~e~~~~~~ 183 (315)
...+..+++|+++++|++ +|.+|| +|+++||+|..++. ..++.+
T Consensus 256 ~~~~~~~~~~i~~~s~~~e------------~A~~fi~~~l~s~e~~~~~~~-~~g~~P 301 (421)
T 1mh3_A 256 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGA 301 (421)
T ss_dssp CCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCE
T ss_pred CccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCCC
Confidence 245567999999999998 999999 99999999999985 455433
No 40
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=99.68 E-value=1.6e-16 Score=155.03 Aligned_cols=151 Identities=15% Similarity=0.187 Sum_probs=107.3
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCce--Eee--cChHHH--hhHH-------
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRI--SMV--NSPREV--IGSI------- 74 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki--~~~--d~~~~~--~g~a------- 74 (315)
.+| |++||||+..++.+|+||+++|+++|+++|+||++|.+. ++ +|.. ++. +..... +...
T Consensus 164 ~~d--Gk~Y~~P~~~~~~~l~Ynkdl~~~aG~~~P~Twde~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~gg~ 241 (456)
T 4g68_A 164 TYN--GKIYGIPFDQQASVLYINKELFDKYNVKVPTTFSELIDAIKTFKSKGVTPFALGEKDEWPGMWYYDMIALREGGV 241 (456)
T ss_dssp EET--TEECCEEEEEEEEEEEEEHHHHHHHTCCCCCBHHHHHHHHHHHHHTTCCSBCCCCTTSHHHHHHHHHHHHHHHCH
T ss_pred EEC--CEEEEEEeeccceeeeccHHHHhhcCCcccCCHHHHHHHHHHHHHCCCceEEeccCCCcchHHHHHHHHHHhCCc
Confidence 455 999999999999999999999999999999999999874 33 3322 221 111111 1000
Q ss_pred ----------------HHHHHHHHHHhh--------------cHHHHHHHHcCCEEEEEEehhhHHHHHHcC-----CCe
Q 036082 75 ----------------AVQLNLALLANQ--------------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHM-----SNV 119 (315)
Q Consensus 75 ----------------~~~~a~~~L~~~--------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~-----~~i 119 (315)
.+.++++.+.++ ..+..+.|.+|+++|.+.++..+..+.... .++
T Consensus 242 ~~~~d~~~g~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~ 321 (456)
T 4g68_A 242 QLTRDALNGKASFDNQAFTDAAQKLQDMVNAGAFDSGFMGLTRDEATAEFNQGKAAMYFGGNFDAAAFVSDPSSLVKGKI 321 (456)
T ss_dssp HHHHHHHTTSSCSCCHHHHHHHHHHHHHHHTTCBCTTGGGCCHHHHHHHHHTTCCSEEEEEGGGHHHHHTSTTCSCTTTE
T ss_pred hhcccccCCccccCCHHHHHHHHHHHHHHHcCCCCCccccCChHHHHhhhccCCEEEEEeCchHHHHHHhccccccCCce
Confidence 124555555443 235678899999999998887776665432 357
Q ss_pred EE--EeC--CC--c---ee--eeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 120 AV--VPK--SG--A---SL--WADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 120 ~~--~Pk--eG--~---~~--~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
++ +|. .| . .+ +..+++|+++++|++ +|.+||+||+++|.|..+..
T Consensus 322 ~~~~~P~~~~~~~~~~~~~~g~~~~~~i~~~sk~~e------------~A~~fl~~l~s~e~~~~~~~ 377 (456)
T 4g68_A 322 EAVRFPTIEGGKGDPTEYIGGTVGALMVSANSKYKD------------EAVRAAKYLAKQLSDMDYLI 377 (456)
T ss_dssp EEECCCBCTTCCSCTTCEEEEEEEEEEEBTTCSCHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCccCCCCCCcceeecccceeeeecCCCcCHH------------HHHHHHHHHCCHHHHHHHHH
Confidence 76 663 12 1 11 235789999999998 99999999999999999884
No 41
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=99.68 E-value=3.2e-16 Score=150.80 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=110.6
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--ccC----CceEeecChHHHh---hH-------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA----GRISMVNSPREVI---GS------------- 73 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~----Gki~~~d~~~~~~---g~------------- 73 (315)
||++|+||+.+++.+|+||+++|++ .|+||++|++. +++ +...+.......+ .+
T Consensus 138 dG~~y~vP~~~~~~~l~Ynkdl~~~----~P~Twdel~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~ 213 (420)
T 4hw8_A 138 DNKQLALPAIVETTALFYNKKLVKN----APQTLEEVEANAAKLTDSKKKQYGMLFDAKNFYFNYPFLFGNDDYIFKKNG 213 (420)
T ss_dssp TTEECEEEEEEECCEEEEETTTCCS----CCCBHHHHHHHHHHHCBTTTTBEEEECCTTSHHHHHHHHCCTTCCSEEESS
T ss_pred CCEEEEeeeeccceEEEEEhhhhhh----CCCCHHHHHHHHHHHhccCCceeEEEecCccHHHHHHHHHhcCCceeccCC
Confidence 3999999999999999999999998 49999999974 332 2244322211111 01
Q ss_pred ------------HHHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHc-CCCeEE--EeCC-C
Q 036082 74 ------------IAVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKH-MSNVAV--VPKS-G 126 (315)
Q Consensus 74 ------------a~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~-~~~i~~--~Pke-G 126 (315)
....++++.+.++ ..+..+.|.+|++.|.+.++..+..+... +.++++ +|.. |
T Consensus 214 ~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~g 293 (420)
T 4hw8_A 214 SEYDIHQLGLNSKHVVKNAERLQKWYDKGYLPKAATHDVMIGLFKEGKVGQFVTGPWNINEYQETFGKDLGVTTLPTDGG 293 (420)
T ss_dssp SSEEEEEECTTCHHHHHHHHHHHHHHHTTSSCSSCCHHHHHHHHHTTCEEEEEECSTTHHHHHHHHGGGEEEECCCEETT
T ss_pred CcccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCcchHHHHhhcCceEEEEeCCccHHHHHhhcCCCeEEEeCCCCCC
Confidence 0234556655544 23567899999999999998887776655 567887 6752 3
Q ss_pred ----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCC
Q 036082 127 ----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (315)
Q Consensus 127 ----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P 184 (315)
......+++|+++++|++ +|.+||+||++||.|..+++ ..++.++
T Consensus 294 ~~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~~l~s~e~q~~~~~-~~g~~P~ 342 (420)
T 4hw8_A 294 KPMKPFLGVRGWYLSEYSKHKY------------WAKDLMLYITSKDTLQKYTD-EMSEITG 342 (420)
T ss_dssp EECCCEEEEEEEEEETTCSCHH------------HHHHHHHHTTSHHHHHHHHH-HHCCCBS
T ss_pred CCCCcccccceEEEeCCCCCHH------------HHHHHHHHHhCHHHHHHHHH-hcCCCCC
Confidence 335568999999999998 99999999999999999985 4455443
No 42
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.68 E-value=5.2e-16 Score=154.50 Aligned_cols=240 Identities=17% Similarity=0.176 Sum_probs=152.1
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecChHHH---hhHH----------
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSPREV---IGSI---------- 74 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~~~~---~g~a---------- 74 (315)
.+| |++||+|+.+++.+|+||+++|++ +|+||+||++. ++ +|+..+.-..... +.+.
T Consensus 98 ~~d--G~~y~~P~~~~~~~l~ynkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 171 (581)
T 3o3u_N 98 RYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKY 171 (581)
T ss_dssp EET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEE
T ss_pred EEC--CEEEEEeeeccceEEEEEhHHhhc----CCCCHHHHHHHHHHHhhCCCceEEeecCChHHHHHHHHhcCCceeec
Confidence 445 999999999999999999999985 89999999985 33 4554432111111 1110
Q ss_pred ---------------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCC-
Q 036082 75 ---------------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKS- 125 (315)
Q Consensus 75 ---------------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pke- 125 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 251 (581)
T 3o3u_N 172 ENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFK 251 (581)
T ss_dssp ETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBT
T ss_pred ccCcccccccccCCHHHHHHHHHHHHHHhcCcCCCCCChhhHhhHHhcCCEEEEeccchhhchHhhcCCceEEEECCCCC
Confidence 234566655544 13567899999999999998888777777778887 6752
Q ss_pred C----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhc
Q 036082 126 G----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALESTLVKLPGELLK 200 (315)
Q Consensus 126 G----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~ 200 (315)
| ...+..+++|+++++|++ +|++||+ |++++|+|..+.. ..++..|.. ... .+.+.+
T Consensus 252 ~~~~~~~~~~~~~~i~~~s~~~e------------~A~~fl~~~l~s~e~~~~~~~-~~~~~~p~~-~~~----~~~~~~ 313 (581)
T 3o3u_N 252 GQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSY----EEELAK 313 (581)
T ss_dssp TBCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEESB-HHH----HHHHTT
T ss_pred CCCCcccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHhh-cCCCCccch-hhh----hhhhhc
Confidence 2 245668899999999998 9999995 9999999999985 444444543 222 122211
Q ss_pred CCCCCCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCCCcchhHHHHHHHHhhhhhHHHHHHHHHHHh
Q 036082 201 GKPSLDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQSITSLVKEASAALYITGCTEMAEVLEVLRE 278 (315)
Q Consensus 201 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 278 (315)
. +.+ ....+.+......+..+ ......+.. .++++..|. .++ ++...++.++++..-.
T Consensus 314 -~----p~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~g~-~~~----------~~al~~~~~~~~~~l~ 373 (581)
T 3o3u_N 314 -D----PRI---AATMENAQKGEIMPNIPQMSAFWYAVRT-AVINAASGR-QTV----------DAALAAAQTNAAAASA 373 (581)
T ss_dssp -C----HHH---HHHHHHHTTSEECCCSTTHHHHHHHHHH-HHHHHHHTS-SCH----------HHHHHHHHHHHHSCCC
T ss_pred -C----hHH---HHHHHHhhcCccCCCCccHHHHHHHHHH-HHHHHHcCC-CCH----------HHHHHHHHHHHHHHHh
Confidence 1 111 11122333333333332 334456777 888888887 343 2333445555554444
Q ss_pred hccchhhhcccccchhh
Q 036082 279 TKDECLFEQSCCQSCRV 295 (315)
Q Consensus 279 ~~~~~~~~~~~~~~~~~ 295 (315)
+.-....-+++--.|++
T Consensus 374 ~~~~~~~G~~v~L~C~~ 390 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKG 390 (581)
T ss_dssp EEEEEETTSCEEECCTT
T ss_pred cccceecCCcEEEeeee
Confidence 43344444566666666
No 43
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=99.68 E-value=3.5e-16 Score=149.76 Aligned_cols=155 Identities=11% Similarity=0.167 Sum_probs=109.8
Q ss_pred CCCeEeeeeee-ceEEEEEecccccccCCCCCCChHhhcCc--ccC--Cc-eEeecCh--H--HHh-----hHH------
Q 036082 16 RGKICAAPYRW-GTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--GR-ISMVNSP--R--EVI-----GSI------ 74 (315)
Q Consensus 16 dG~~Y~vP~~~-g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~--Gk-i~~~d~~--~--~~~-----g~a------ 74 (315)
||++||||+.. ++.+++||+++|+++|+++|+||++|++. +++ |. ..+.... . ..+ ...
T Consensus 108 dG~~y~vP~~~~~~~~l~Ynkdl~~~aGl~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 187 (400)
T 2b3f_A 108 KGGIWSVPVNIHRSNVMWYLPAKLKGWGVNPPRTWDKFLATCQTLKQKGLEAPLALGENWTQQHLWESVALAVLGPDDWN 187 (400)
T ss_dssp TTEECCEECCBEESCEEEECHHHHHHTTCCCCSSHHHHHHHHHHHHHTTCSCCEECCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEeeccCceEEEcHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCcCCeEeCCcchHhHHHHHHHHhhcCHHHHH
Confidence 39999999999 88999999999999999999999999975 342 55 4332111 1 011 100
Q ss_pred ------------HHHHHHHHHHhh------------cHHHHHHHHcCCEEEEEEehhhHHHHHHc-----CCCeEE--Ee
Q 036082 75 ------------AVQLNLALLANQ------------SAHHLKAFGIGDVWVAVGWSSDVLPAVKH-----MSNVAV--VP 123 (315)
Q Consensus 75 ------------~~~~a~~~L~~~------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~-----~~~i~~--~P 123 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++.....+... +.++++ +|
T Consensus 188 ~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~P 267 (400)
T 2b3f_A 188 NLWNGKLKFTDPKAVRAWEVFGRVLDCANKDAAGLSWQQAVDRVVQGKAAFNIMGDWAAGYMTTTLKLKPGTDFAWAPSP 267 (400)
T ss_dssp HHHTTSSCTTSHHHHHHHHHHHHHHTTBCTTGGGCCHHHHHHHHHHTSCSEEECCTHHHHHHHHTTCCCBTTTBEEEECT
T ss_pred HHhcCccccCCHHHHHHHHHHHHHHHhcCCCccCCCHHHHHHHHhCCceEEEEeccccHhhhhhhhcCCCCCCeEEEeCC
Confidence 113445555443 12457789999999998776655555443 356777 67
Q ss_pred C-CCc-eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCC
Q 036082 124 K-SGA-SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGAS 183 (315)
Q Consensus 124 k-eG~-~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~ 183 (315)
. +|. ..+.++++|+++++|++ +|.+||+|++++|.|..++. ..++.+
T Consensus 268 ~~~g~~~~~~~~~~i~~~s~~~e------------~A~~fi~~l~s~e~q~~~~~-~~g~~P 316 (400)
T 2b3f_A 268 GTQGVFMMLSDSFGLPKGAKNRQ------------NAINWLRLVGSKEGQDTSNP-LKGSIA 316 (400)
T ss_dssp TCTTEEEEECEEECCBTTCTTHH------------HHHHHHHHHTSHHHHHHHHH-HHSCBC
T ss_pred CCCCceecccceEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHH-hcCCCC
Confidence 4 343 34567899999999998 99999999999999999874 345433
No 44
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=99.68 E-value=4.4e-16 Score=153.37 Aligned_cols=236 Identities=17% Similarity=0.197 Sum_probs=147.5
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcC--cccC--CceEeecChHHHh---hHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPREVI---GSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d--p~~~--Gki~~~d~~~~~~---g~a-------------- 74 (315)
||++||||+.+++.+|+||+++|++ +|+||+||++ .+++ |++.+.....+.+ .+.
T Consensus 101 dGk~YgvP~~~~~~~l~YNkdlf~~----~P~Twdel~~~a~kl~~~G~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~ 176 (463)
T 2xz3_A 101 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGK 176 (463)
T ss_dssp TTEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTE
T ss_pred CCEEEEEeeeccceEEEEEhHhhhC----CCCCHHHHHHHHHHHHhCCcceeEecCCccHHHHHHHHHcCCcEecccccc
Confidence 3999999999999999999999987 8999999998 4554 6665432221111 000
Q ss_pred -----------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-CC---
Q 036082 75 -----------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-SG--- 126 (315)
Q Consensus 75 -----------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-eG--- 126 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|. +|
T Consensus 177 ~d~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~ 256 (463)
T 2xz3_A 177 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS 256 (463)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCEETTEEC
T ss_pred ccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCcchHHHHHHcCCeeEEecCccchhHHhhcCCCEEEEeCCCCCCCCC
Confidence 234555555443 13456889999999999887776666555678887 675 34
Q ss_pred -ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCC
Q 036082 127 -ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWI-EFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPS 204 (315)
Q Consensus 127 -~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~ 204 (315)
...+..+++|+++++|++ +|++|| +|+++||+|..++. ..++. |.. +.+.. +.+.+ .|
T Consensus 257 ~~~~~~~~~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~-~~g~~-P~~-~~~~~---~~~~~-~p- 316 (463)
T 2xz3_A 257 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLG-AVA-LKSYE---EELAK-DP- 316 (463)
T ss_dssp CCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCC-EES-BHHHH---HHHTT-SH-
T ss_pred cccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCC-CCc-HHHHH---HHHhh-Ch-
Confidence 244567999999999998 999999 99999999999985 45554 432 22211 11111 11
Q ss_pred CCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCC-CcchhHHHHHH--------------HHhhhhhH
Q 036082 205 LDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQ-SITSLVKEASA--------------ALYITGCT 267 (315)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~-~~~~~~~~~~a--------------~~~~~~~~ 267 (315)
.+ ..-.+.+......+..+ ......+.. .++++..|+ +..++.+++.+ .-+..+.+
T Consensus 317 ---~~---~~~~~~~~~~~~~p~~~~~~~i~~~~~~-~l~~~~~G~~t~eeal~~~~~~~~~~l~~~~~~~~~~~~~~~~ 389 (463)
T 2xz3_A 317 ---RI---AATMENAQKGEIMPNIPQMSAFWYAVRT-AVINAASGRQTVDAALAAAQTNAAALSHQRLTSLIHVLEQDQQ 389 (463)
T ss_dssp ---HH---HHHHHHHHHSEECCCSTTHHHHHHHHHH-HHHHHHTTSSCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ---HH---HHHHHHHhhCccCCCCCcHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 10 00012233333322222 233445666 677777775 33333333222 12446677
Q ss_pred HHHHHHHHHHhhccc
Q 036082 268 EMAEVLEVLRETKDE 282 (315)
Q Consensus 268 ~~~~~~~~~~~~~~~ 282 (315)
.+++.++.|.++=+-
T Consensus 390 ~~~~~i~~~~~~~~~ 404 (463)
T 2xz3_A 390 RLITAINQTHYNLLN 404 (463)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776655
No 45
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Probab=99.67 E-value=1e-15 Score=150.15 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=134.3
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecChHH---HhhHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSPRE---VIGSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~~~---~~g~a-------------- 74 (315)
||++||+|+.+++.+|+||+++|++ +|+||++|++. ++ +|+..+.-.... .+.+.
T Consensus 100 ~G~~y~~P~~~~~~~l~ynkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 175 (507)
T 3oai_A 100 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGK 175 (507)
T ss_dssp TTEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTE
T ss_pred CCEEEEeeccccceEEEEehHhhcc----CcCCHHHHHHHHHHHHhCCCceEEeecCchHHHHHHHHhcCCeeecccCCC
Confidence 3999999999999999999999985 89999999985 33 455443211111 11110
Q ss_pred -----------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCC-----
Q 036082 75 -----------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKS----- 125 (315)
Q Consensus 75 -----------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pke----- 125 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|..
T Consensus 176 ~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 255 (507)
T 3oai_A 176 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS 255 (507)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHCCCEEEECCCBBTTBCC
T ss_pred cCccccccCCHHHHHHHHHHHHHHHcCCCCCCcchhHHHHHHhcCCeEEEeccccccChhhhcCCceeEEeCCCCCCCCC
Confidence 234566655544 13567899999999999999888777777778887 6752
Q ss_pred CceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCC
Q 036082 126 GASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPS 204 (315)
Q Consensus 126 G~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~ 204 (315)
+...+..+++|+++++|++ +|++||+ |++++|+|..+.. ..++..|.. +... +.+.+ .
T Consensus 256 ~~~~~~~~~~i~~~s~~~e------------~A~~fl~~~l~s~e~~~~~~~-~~~~~~p~~-~~~~----~~~~~-~-- 314 (507)
T 3oai_A 256 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSYE----EELAK-D-- 314 (507)
T ss_dssp CCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEESB-HHHH----HHHTT-C--
T ss_pred CccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHhh-ccCCCCCch-hhhh----hhhhh-C--
Confidence 2345668999999999998 9999996 9999999999985 444444543 2221 22211 1
Q ss_pred CCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCC
Q 036082 205 LDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~ 248 (315)
+.+ ....+.+......+..+ ......+.. .++++..|+
T Consensus 315 --p~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~g~ 354 (507)
T 3oai_A 315 --PRI---AATMENAQKGEIMPNIPQMSAFWYAVRT-AVINAASGR 354 (507)
T ss_dssp --HHH---HHHHHHHHHSEECCCSTTHHHHHHHHHH-HHHHHHTTS
T ss_pred --hHH---HHHHHHHhcCCCCCCCchHHHHHHHHHH-HHHHHHcCC
Confidence 111 11123333334333333 334456777 888898887
No 46
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A
Probab=99.67 E-value=1.7e-16 Score=162.45 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=114.6
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCce--Eee-cChHHHhhHH----------
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRI--SMV-NSPREVIGSI---------- 74 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki--~~~-d~~~~~~g~a---------- 74 (315)
.+| |++||||+.+++.+|+||+++|++ +|+||++|++. ++ ++.. .+. ......+...
T Consensus 98 ~~d--Gk~YgvP~~~~~~~l~YNkdlf~e----~P~TwdEl~~~a~klk~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 171 (637)
T 4dxb_A 98 RYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKY 171 (637)
T ss_dssp EET--TEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCCSBCCCCSSHHHHHHHHHHTTCEEEEE
T ss_pred EEC--CEEEEEEEecceEEEEEEcHHhcC----CCCCHHHHHHHHHHhhhcCCCccccCCCcchhhhHHHHHhccccccc
Confidence 455 999999999999999999999987 89999999874 22 2221 111 1111111110
Q ss_pred ---------------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC--
Q 036082 75 ---------------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-- 124 (315)
Q Consensus 75 ---------------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-- 124 (315)
...++++.+.++ ..+..+.|.+|+++|.+.|+..+..+.+.+.++++ +|.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~am~~~g~w~~~~~~~~~~~~gv~~lP~~~ 251 (637)
T 4dxb_A 172 ENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFK 251 (637)
T ss_dssp ETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHHTCCEEEECCCBBT
T ss_pred ccccccccccccCCHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHcCCEEEEEeCHHHHHHHHhcCCCeEEEEcCCCC
Confidence 235566666554 23567889999999999998888888777888887 773
Q ss_pred ---CCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCC
Q 036082 125 ---SGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 185 (315)
Q Consensus 125 ---eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~ 185 (315)
.+..++..+++|+++|+|++ +|++||+ ||+|||+|..+.+ ..++.+|+
T Consensus 252 g~~~~~~~g~~~~~I~~~Skn~e------------aA~~Fl~~fl~s~E~q~~~~~-~~g~~p~~ 303 (637)
T 4dxb_A 252 GQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVA 303 (637)
T ss_dssp TBCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEES
T ss_pred CCCCceEeeeeEEEEECCCCCHH------------HHHHHHHHHhCCHHHHHHHHH-hCCCCCCc
Confidence 23456678999999999998 9999995 8999999999996 56765554
No 47
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=99.67 E-value=1.9e-15 Score=148.98 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=111.0
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcC--cccC--CceEeecChHHHh---hHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPREVI---GSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d--p~~~--Gki~~~d~~~~~~---g~a-------------- 74 (315)
+|++||||+..++.+|+||+++|++ +|+||++|++ .+++ |++.+.....+.+ .+.
T Consensus 115 dGk~ygvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~ 190 (477)
T 2vgq_A 115 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGK 190 (477)
T ss_dssp TTEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTE
T ss_pred CCEEEEEecccCceEEEEehHhhcc----CCCCHHHHHHHHHHHHhCCcceeEecCCCchHHHHHHHhcCCeeccccccc
Confidence 3999999999999999999999987 8999999998 4554 7665432221111 000
Q ss_pred -----------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-CC---
Q 036082 75 -----------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-SG--- 126 (315)
Q Consensus 75 -----------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-eG--- 126 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|. +|
T Consensus 191 ~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~ 270 (477)
T 2vgq_A 191 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS 270 (477)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCC
T ss_pred ccccccccCCHHHHHHHHHHHHHHHCCCCCCCCCchHHHHHHHcCCeeEEecCCchHHHHhhcCCCeEEEeCCCCCCCCC
Confidence 124555555433 12566889999999999887776666555678887 775 33
Q ss_pred -ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHHHHHHHhhhCCCCC
Q 036082 127 -ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWI-EFCLQTARALPFKQEVIPGAS 183 (315)
Q Consensus 127 -~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~e~~~~~~ 183 (315)
...+..+++|+++++|++ +|.+|| +|+++||+|..++. ..++.+
T Consensus 271 ~~~~~~~~~~I~~~s~~~e------------aA~~fl~~~l~s~e~q~~~~~-~~g~~P 316 (477)
T 2vgq_A 271 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGA 316 (477)
T ss_dssp CCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCE
T ss_pred cceecceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCCC
Confidence 234567899999999998 999999 99999999999984 455543
No 48
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=99.66 E-value=5.2e-16 Score=154.78 Aligned_cols=152 Identities=19% Similarity=0.239 Sum_probs=111.5
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcC--cccC--CceEeecChHHHh---hHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPREVI---GSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d--p~~~--Gki~~~d~~~~~~---g~a-------------- 74 (315)
||++||||+.+++.+|+||+++|++ +|+||+||++ .+++ |++.+.....+.+ .+.
T Consensus 100 dGk~YgvP~~~~~~~l~YNkdlf~~----~P~TwdEl~~~a~klk~~G~~g~~~~~~~~~~~~~~l~~~Gg~~~~~~~g~ 175 (494)
T 1y4c_A 100 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGK 175 (494)
T ss_dssp TTEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEEEEEETTE
T ss_pred CCEEEEEeeeCCeeEEEEEhHHhhC----CCCCHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHhcCCceecccccc
Confidence 3999999999999999999999987 8999999998 3553 6655432211111 000
Q ss_pred -----------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-CC---
Q 036082 75 -----------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-SG--- 126 (315)
Q Consensus 75 -----------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-eG--- 126 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|. +|
T Consensus 176 ~d~~~~~~~~~~~~~al~~l~~L~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~gv~p~P~~~g~~~ 255 (494)
T 1y4c_A 176 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS 255 (494)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCC
T ss_pred ccccccccCCHHHHHHHHHHHHHHHCCCCCCCCChhHHHHHHHCCCeEEEEeChhHHHHHHhcCCCEEEEeCCCCCCCCc
Confidence 123555555433 13456889999999999888777666666678887 775 33
Q ss_pred -ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHHHHHHHhhhCCCCCC
Q 036082 127 -ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWI-EFCLQTARALPFKQEVIPGASP 184 (315)
Q Consensus 127 -~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~e~~~~~~P 184 (315)
...+.++++|+++++|++ +|++|| +|+++||+|..++. ..++.++
T Consensus 256 ~~~~g~~~~~I~~~skn~e------------aA~~Fl~~fl~s~e~q~~~~~-~~g~~P~ 302 (494)
T 1y4c_A 256 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAV 302 (494)
T ss_dssp CCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCEE
T ss_pred cccccceEEEEECCCCCHH------------HHHHHHHHHHcCHHHHHHHHH-HhCCCCC
Confidence 234668999999999998 999999 99999999999984 4555443
No 49
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=99.66 E-value=8.5e-16 Score=151.26 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=111.5
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcC--cccC--CceEeecChHHHh---hHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPREVI---GSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d--p~~~--Gki~~~d~~~~~~---g~a-------------- 74 (315)
||++||||+..++.+++||+++|++ +|+||+||++ .+++ |++.+.....+.+ .+.
T Consensus 100 dGk~ygvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~ 175 (487)
T 1hsj_A 100 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGK 175 (487)
T ss_dssp TTEECEEEEEEECCEEEEEGGGCSS----CCSBSTTSHHHHHHHTTTTCEEECCCSSSHHHHHHHHHHTTCCSEEECSSS
T ss_pred CCEEEEeeeecceeEEEEEhhhhcC----CCCCHHHHHHHHHHHhcCCcceeeecCCchHHHHHHHHhcCCeeccccccc
Confidence 3999999999999999999999987 8999999998 4565 6665432221111 000
Q ss_pred -----------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-CC---
Q 036082 75 -----------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-SG--- 126 (315)
Q Consensus 75 -----------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-eG--- 126 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|. +|
T Consensus 176 ~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~ 255 (487)
T 1hsj_A 176 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS 255 (487)
T ss_dssp EEEEEETTSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTSSEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCC
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHCCCCCCCCCchhHHHHHHcCCeeEEecCCcchhhHHhcCCCeeEecCCCCCCCCC
Confidence 124555555443 13456889999999999888777666666678887 775 33
Q ss_pred -ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHHHHHHHhhhCCCCC
Q 036082 127 -ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWI-EFCLQTARALPFKQEVIPGAS 183 (315)
Q Consensus 127 -~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~e~~~~~~ 183 (315)
...+..+++|+++++|++ +|++|| +|+++||+|..++. ..++.+
T Consensus 256 ~~~~~~~~~~I~~~s~~~e------------aA~~fl~~~l~s~e~~~~~~~-~~g~~P 301 (487)
T 1hsj_A 256 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGA 301 (487)
T ss_dssp CCCBEEEEEEEBSSCSCHH------------HHHHHHHHTTTSHHHHHHHHH-HSCCCE
T ss_pred CccccceEEEEECCCCCHH------------HHHHHHHHHHcCHHHHHHHHH-hcCCCC
Confidence 234567999999999998 999999 99999999999985 455433
No 50
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.66 E-value=1.1e-15 Score=151.77 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=111.1
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcC--cccC--CceEeecChHHHh---hHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPREVI---GSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d--p~~~--Gki~~~d~~~~~~---g~a-------------- 74 (315)
||++||||+.+++.+++||+++|++ +|+||+||++ .+++ |++.+.....+.+ .+.
T Consensus 101 dGk~YgvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~ 176 (509)
T 1r6z_P 101 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGK 176 (509)
T ss_dssp TTEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTE
T ss_pred CCEEEEeccccCceEEEEEhHhhcC----CCCCHHHHHHHHHHHHhCCcceeEecCCCcHHHHHHHHhcCCeeccccccc
Confidence 3999999999999999999999987 8999999998 3554 6655432211111 000
Q ss_pred -----------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-CC---
Q 036082 75 -----------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-SG--- 126 (315)
Q Consensus 75 -----------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-eG--- 126 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|. +|
T Consensus 177 ~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~ 256 (509)
T 1r6z_P 177 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS 256 (509)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCC
T ss_pred ccccccccCCHHHHHHHHHHHHHHHcCCCCCCCChhHHHHHHHcCCeeEEEcCcchHHHHHhcCCceEEEeCCCCCCCCC
Confidence 124555555443 13456889999999999888777666666678887 775 33
Q ss_pred -ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHHHHHHHhhhCCCCC
Q 036082 127 -ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWI-EFCLQTARALPFKQEVIPGAS 183 (315)
Q Consensus 127 -~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~e~~~~~~ 183 (315)
...+..+++|+++++|++ +|++|| +|+++||+|..++. ..++.+
T Consensus 257 ~~~~~~~~~~I~~~sk~~e------------aA~~fl~~~l~s~e~q~~~~~-~~g~~P 302 (509)
T 1r6z_P 257 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGA 302 (509)
T ss_dssp CCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTTSHHHHHHHHH-HSCCSE
T ss_pred cceecccEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCCC
Confidence 234567899999999998 999999 99999999999985 455433
No 51
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=99.66 E-value=1.4e-15 Score=146.29 Aligned_cols=152 Identities=15% Similarity=0.188 Sum_probs=109.3
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--ccC--------CceEeecChHHHh---hHH--------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--------GRISMVNSPREVI---GSI-------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~--------Gki~~~d~~~~~~---g~a-------- 74 (315)
||++||||+..++.+|+||+++|++ +|+||+||++. +++ |+..+.......+ .+.
T Consensus 130 dG~~ygvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~G~~~~ 205 (416)
T 2xd3_A 130 NGKVYGAPAVIESLVMYYNKDLVKD----APKTFADLENLAKDSKYAFAGEDGKTTAFLADWTNFYYTYGLLAGNGAYVF 205 (416)
T ss_dssp TCCBCCEEEEEECCEEEEETTTCSS----CCCBHHHHHHHHHSGGGBCTTSTTCBCSEECCTTSHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEeeecCceEEEEEhhhhcC----CCCCHHHHHHHHHHhhcccccCCCCceeeEEecCcchhHHHHHHhhCCccc
Confidence 4999999999999999999999987 89999999973 554 4443322111111 000
Q ss_pred ---------------HHHHHHHHHHhh---------c-----HHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--Ee
Q 036082 75 ---------------AVQLNLALLANQ---------S-----AHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VP 123 (315)
Q Consensus 75 ---------------~~~~a~~~L~~~---------~-----~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~P 123 (315)
...++++.+.++ + .+..+.|.+|+++|.+.++..+..+...+.++++ +|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~al~~~~~l~~g~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P 285 (416)
T 2xd3_A 206 GQNGKDAKDIGLANDGSIVGINYAKSWYEKWPKGMQDTEGAGNLIQTQFQEGKTAAIIDGPWKAQAFKDAKVNYGVATIP 285 (416)
T ss_dssp HHHHTEEEEEETTSHHHHHHHHHHHHHHTTSCGGGGCSSCHHHHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEEECCC
T ss_pred CCCCCcccccccCCHHHHHHHHHHHHHHhcCCCccccccccHHHHHHHHhcCCeEEEecCcchhhhHHhcCCceEEEeCC
Confidence 123455544432 1 2346789999999999888777666665668887 77
Q ss_pred CC--C----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCC
Q 036082 124 KS--G----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (315)
Q Consensus 124 ke--G----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P 184 (315)
.. | ...+..+++|+++++|++ +|++||+||+++|.|..++. ..++.++
T Consensus 286 ~~~~g~~~~~~~~~~~~~I~~~s~~~e------------~A~~fi~~l~s~e~~~~~~~-~~g~~P~ 339 (416)
T 2xd3_A 286 TLPNGKEYAAFGGGKAWVIPQAVKNLE------------ASQKFVDFLVATEQQKVLYD-KTNEIPA 339 (416)
T ss_dssp BCTTSCCCCCEEEEEEEECBTTCSCHH------------HHHHHHHHHHSHHHHHHHHH-HHCCEES
T ss_pred CCCCCCcccccccceEEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHH-hcCCCCC
Confidence 52 4 234567899999999998 99999999999999999885 3454433
No 52
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Probab=99.65 E-value=4.5e-15 Score=141.15 Aligned_cols=152 Identities=15% Similarity=0.179 Sum_probs=109.8
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--ccC--CceEeecChHHH------h---h----------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--GRISMVNSPREV------I---G---------- 72 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~--Gki~~~d~~~~~------~---g---------- 72 (315)
||++||||+..++.+|+||+++|++ +|+||++|++. +++ |+..+.....+. + |
T Consensus 102 dG~~y~vP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~d 177 (386)
T 2gh9_A 102 GGRLMGLPAFAESVALIYNKKYVKE----PPRTWEEFLALAQKLTTGATFGFLYNIGDPYFNFGFFKAFGAENVFAKDAK 177 (386)
T ss_dssp TTEECSEEEEEECCEEEEETTTCSS----CCSSHHHHHHHHHHHCSSSCEEEECCTTCHHHHHHHHHHHTCSSSEEEETT
T ss_pred CCEEEEeccccceeEEEEehhhhcc----CCCCHHHHHHHHHHhhhCCEEEEEeecCchHHHHHHHHHcCCceEeeeccc
Confidence 3999999999999999999999987 89999999975 443 555443221100 0 0
Q ss_pred -----------HHHHHHHHHHHHhh------------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-CC
Q 036082 73 -----------SIAVQLNLALLANQ------------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-SG 126 (315)
Q Consensus 73 -----------~a~~~~a~~~L~~~------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-eG 126 (315)
-....++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|. +|
T Consensus 178 g~~~~~~~~~~~~~~~~al~~~~~l~~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g 257 (386)
T 2gh9_A 178 GNLDPTKLLIGGEVGEKALQFIKDLRFKYNLVPEGVDYGVADGAFKDGALAMILNGPWALGDYKKAKVDFGIAPFPVPPG 257 (386)
T ss_dssp TEEEEEEESSSHHHHHHHHHHHHHHHHTSCCSCTTCCHHHHHHHHHHTCEEEEEECGGGHHHHHHTTCCEEEECCCCCTT
T ss_pred CCccccccccCCHHHHHHHHHHHHHHHhcCcCCCCCChHHHHHHHhCCCeeEEEeCcHHHHHHHhcCCCeEEEecCCCCC
Confidence 00123445444332 12456889999999999888777666655678887 775 23
Q ss_pred ------ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCC
Q 036082 127 ------ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPS 185 (315)
Q Consensus 127 ------~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~ 185 (315)
...+..+++|+++++|++ +|.+||+||+++|.|..+.. ..++ .|.
T Consensus 258 ~~~~~~~~~~~~~~~i~~~s~~~e------------~A~~fl~~l~s~e~~~~~~~-~~g~-~P~ 308 (386)
T 2gh9_A 258 AKNPWGPFLGVQGVVVNAYSKNKT------------QAVNFAKTLVTGRNLVAFNQ-AGGR-IPV 308 (386)
T ss_dssp CSSCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHHTSHHHHHHHHH-HSCC-EEC
T ss_pred CCCcccccccceEEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHH-hcCC-CCC
Confidence 234567899999999998 99999999999999999884 4454 444
No 53
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=99.65 E-value=2.1e-15 Score=151.15 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=113.9
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecChHHH---hhHH----------
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSPREV---IGSI---------- 74 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~~~~---~g~a---------- 74 (315)
.+| |++||||+.+++.+|+||+++|++ +|+||++|++. ++ +|+..+.-...+. +.+.
T Consensus 100 ~~d--Gk~YglP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~ 173 (539)
T 3h3g_A 100 RYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKY 173 (539)
T ss_dssp EET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEEEEE
T ss_pred eEC--CEEEEEeeecCceEEEEEhHHhcC----CCCCHHHHHHHHHHHHhCCCceEEeecCcHHHHHHHHHhcCCceeec
Confidence 455 999999999999999999999985 89999999975 33 4554432111111 1110
Q ss_pred ---------------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCC-
Q 036082 75 ---------------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKS- 125 (315)
Q Consensus 75 ---------------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pke- 125 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~ 253 (539)
T 3h3g_A 174 ENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFK 253 (539)
T ss_dssp ETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBT
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHcCCCCCCCChhHHHHHHHCCCeeEEEecchhhhhHHHcCCcEEEEECCCCC
Confidence 234566655544 13567899999999999998888777777778887 6742
Q ss_pred ----CceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCC
Q 036082 126 ----GASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 185 (315)
Q Consensus 126 ----G~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~ 185 (315)
+...+..+++|+++++|++ +|.+||+ |++++|+|..+.. ..++..|.
T Consensus 254 g~~~~~~~g~~~~~I~~~s~~~e------------aA~~Fl~~~l~s~e~q~~~~~-~~~~~~p~ 305 (539)
T 3h3g_A 254 GQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVA 305 (539)
T ss_dssp TBCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTTSHHHHHHHHH-HSCCCEES
T ss_pred CCCCcccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-cCCCCCcc
Confidence 2345667899999999998 9999995 9999999999985 44544454
No 54
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Probab=99.64 E-value=5.2e-15 Score=147.03 Aligned_cols=152 Identities=20% Similarity=0.237 Sum_probs=110.7
Q ss_pred CCcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeec---ChHHHhhHH---------
Q 036082 11 GEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVN---SPREVIGSI--------- 74 (315)
Q Consensus 11 ~~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d---~~~~~~g~a--------- 74 (315)
..+| |++||||+.+++.+|+||+++|++ +|+||++|.+. ++ +|...+.- .....+.+.
T Consensus 101 ~~~d--Gk~YgvP~~~~~~~l~YNkdlf~e----~P~Twdel~~~akklk~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~ 174 (487)
T 4exk_A 101 VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFK 174 (487)
T ss_dssp TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCEEECCCTTSHHHHHHHHHHTTCEEEE
T ss_pred ceEC--CEEEecCeEeccEEEEEEeecccc----CCchHHHHHHHHHHHHhcCCCccccCCCcccchhHHHHhhccceee
Confidence 3455 999999999999999999999986 89999999864 33 34332221 111111111
Q ss_pred ----------------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-
Q 036082 75 ----------------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK- 124 (315)
Q Consensus 75 ----------------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk- 124 (315)
...++++.+.++ .....+.|.+|+++|.+.++..+..+...+.++++ +|.
T Consensus 175 ~~~g~~d~~~~~~~~~~~~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~Am~~~g~w~~~~~~~~~~~~gv~plP~~ 254 (487)
T 4exk_A 175 YAAGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTF 254 (487)
T ss_dssp EETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECCCBB
T ss_pred ccCCCccccccccCCHHHHHHHHHHHHHHHcCCCCcccchhhHHHhhhcCCEEEEEeCHHHHHHHHhcCCCeeEEEeccC
Confidence 234566665543 23456789999999999999888888887888887 553
Q ss_pred CC----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCC
Q 036082 125 SG----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPG 181 (315)
Q Consensus 125 eG----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~ 181 (315)
.| ..++..+++|+++|+|++ +|++||+ |+.++|.|..+.. ..++
T Consensus 255 ~g~~~~~~~g~~~~~I~~~Skn~e------------aA~~Fl~~~l~s~e~q~~~~~-~~~~ 303 (487)
T 4exk_A 255 KGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPL 303 (487)
T ss_dssp TTBCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCC
T ss_pred CCCCCcceecceEEEEECCCCCHH------------HHHHHHHHHhCCHHHHHHHHH-cCCC
Confidence 22 345678899999999998 9999996 7889999999985 4443
No 55
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=99.64 E-value=3.4e-15 Score=153.15 Aligned_cols=202 Identities=19% Similarity=0.209 Sum_probs=134.8
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecChHHH---hhHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSPREV---IGSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~~~~---~g~a-------------- 74 (315)
||++||||+.+++.+|+||++++++ +|+||+||++. ++ +|...+.-+..+. +.+.
T Consensus 100 dGk~YglP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~ 175 (658)
T 3f5f_A 100 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGK 175 (658)
T ss_dssp TTEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEESCCCCSS
T ss_pred CCEEEEEecccCeEEEEEEhHHhhC----CCCCHHHHHHHHHHHHhCCCCeEEeecCchHHHHHHHHhcCCeeeecCCCc
Confidence 3999999999999999999999985 89999999985 33 4554432211111 1110
Q ss_pred -----------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCC-C---
Q 036082 75 -----------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKS-G--- 126 (315)
Q Consensus 75 -----------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pke-G--- 126 (315)
...++++.+.++ ..+..+.|.+|+++|.+.|+..+..+.+.+.++++ +|.. |
T Consensus 176 ~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~ 255 (658)
T 3f5f_A 176 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS 255 (658)
T ss_dssp SEEECEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCC
T ss_pred ccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHCCCEEEEEechhhhHHHHhcCCCEEEEECCCCCCCCC
Confidence 234566655543 23567899999999999999888888777778887 6752 2
Q ss_pred -ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCC
Q 036082 127 -ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPS 204 (315)
Q Consensus 127 -~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~ 204 (315)
...+.++++|+++++|++ +|++||+ |++++|+|..+.. ..++..|.. +... +.+.+ .
T Consensus 256 ~~~~g~~~~~I~~~sk~~e------------aA~~Fl~~~l~s~e~q~~~~~-~~~~~~p~~-~~~~----~~~~~-~-- 314 (658)
T 3f5f_A 256 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSYE----EELAK-D-- 314 (658)
T ss_dssp CCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEESB-HHHH----HHHTT-S--
T ss_pred ccccCceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-cCCCCCCch-HHHH----HHHhh-C--
Confidence 345678999999999998 9999997 9999999999985 445444543 2221 22211 1
Q ss_pred CCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCC
Q 036082 205 LDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~ 248 (315)
+.+ ....+.+......+..+ ......+.. .++++..|+
T Consensus 315 --p~~---~~~~~~~~~~~~~p~~p~~~~~~~~~~~-~i~~vl~G~ 354 (658)
T 3f5f_A 315 --PRI---AATMENAQKGEIMPNIPQMSAFWYAVRT-AVINAASGR 354 (658)
T ss_dssp --HHH---HHHHHHHHHSEECCCSTHHHHHHHHHHH-HHHHHHTTS
T ss_pred --hHH---HHHHHHHhcCCcCCCCCcHHHHHHHHHH-HHHHHHcCC
Confidence 111 11123334444443333 233456777 888888887
No 56
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Probab=99.64 E-value=3.5e-15 Score=145.99 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=111.3
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcC--cccC--CceEeecChHHHh---hHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPREVI---GSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d--p~~~--Gki~~~d~~~~~~---g~a-------------- 74 (315)
||++||||+.+++.+|+||+++|++ +|+||+||++ .+++ |++.+.....+.+ .+.
T Consensus 98 dGk~y~vP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~ 173 (461)
T 3csg_A 98 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGK 173 (461)
T ss_dssp TTEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEeeccccceEEEEEhhhhcc----CCcCHHHHHHHHHHHhhCCCceeEecCCchHHHHHHHHhcCCeEeecccCc
Confidence 3999999999999999999999987 8999999998 4554 6655443221111 000
Q ss_pred -----------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-CC---
Q 036082 75 -----------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-SG--- 126 (315)
Q Consensus 75 -----------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-eG--- 126 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|. +|
T Consensus 174 ~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~ 253 (461)
T 3csg_A 174 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS 253 (461)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCEETTEEC
T ss_pred ccccccCcCCHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHhcCCeeEEecCcchHHHHHhcCCceEEEeCCCCCCCCC
Confidence 234555555443 13467889999999999887776666555678887 675 33
Q ss_pred -ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHHHHHHHhhhCCCCC
Q 036082 127 -ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWI-EFCLQTARALPFKQEVIPGAS 183 (315)
Q Consensus 127 -~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~e~~~~~~ 183 (315)
...+..+++|+++++|++ +|++|| +|+++||+|..++. ..++.+
T Consensus 254 ~~~~~~~~~~I~~~s~~~e------------~A~~fl~~~l~s~e~q~~~~~-~~g~~P 299 (461)
T 3csg_A 254 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGA 299 (461)
T ss_dssp CCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCE
T ss_pred CceecceEEEEeCCCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCCC
Confidence 234567899999999998 999999 99999999999984 455433
No 57
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=99.64 E-value=3.2e-15 Score=149.30 Aligned_cols=204 Identities=18% Similarity=0.202 Sum_probs=134.8
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecChHHH---hhH-----------
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSPREV---IGS----------- 73 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~~~~---~g~----------- 73 (315)
.+| |++||+|+.+++.+|+||+++|++ +|+||++|++. ++ +|+..+.-..... +.+
T Consensus 99 ~~d--Gk~YglP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~ 172 (522)
T 3mp6_A 99 RYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKY 172 (522)
T ss_dssp EET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCSSSGGGTHHHHHHTTCEEEEE
T ss_pred EEC--CEEEEEeeeccceEEEEEhHhhcc----CCcCHHHHHHHHHHHHhCCCceEEeecCchHHHHHHHHhcCCceeec
Confidence 455 999999999999999999999985 89999999975 33 3554432111110 000
Q ss_pred --------------HHHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCC-
Q 036082 74 --------------IAVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKS- 125 (315)
Q Consensus 74 --------------a~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pke- 125 (315)
....++++.+.++ ..+..+.|.+|+++|.+.|+..+..+...+.++++ +|..
T Consensus 173 ~~~~~d~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~~~~~~~~~~~~~~~~~~~P~~~ 252 (522)
T 3mp6_A 173 ENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFK 252 (522)
T ss_dssp ETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHSSCCEEEECCCBBT
T ss_pred cccccccCccccCCHHHHHHHHHHHHHHHcCCCCCCCChHHHhhHHhcCCEeEEeccCcchhhhhhcCCceEEEECCCCC
Confidence 0234566655543 23567899999999999999888887777778887 6752
Q ss_pred C----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhc
Q 036082 126 G----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALESTLVKLPGELLK 200 (315)
Q Consensus 126 G----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~ 200 (315)
| ...+..+++|+++++|++ +|++||+ |++++|+|..+.. ..++..|.. .... +.+.+
T Consensus 253 g~~~~~~~g~~~~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~-~~~~~~p~~-~~~~----~~~~~ 314 (522)
T 3mp6_A 253 GQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSYE----EELAK 314 (522)
T ss_dssp TBCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEESB-HHHH----HHHTT
T ss_pred CCCCcccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-cCCCCccch-hhhh----hhhhh
Confidence 2 345668999999999998 9999995 9999999999985 444444543 2221 22211
Q ss_pred CCCCCCcccccCCCcHHHhhccccccCCC--HHHHHHHHHHHHHhcccCC
Q 036082 201 GKPSLDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSGWEIGSGQLGQ 248 (315)
Q Consensus 201 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~~~W~~ikag~ 248 (315)
. +.+ ....+.+......+..+ ......+.. .++++..|+
T Consensus 315 -~----p~~---~~~~~~~~~~~~~p~~p~~~~i~~~~~~-~l~~v~~G~ 355 (522)
T 3mp6_A 315 -D----PRI---AATMENAQKGEIMPNIPQMSAFWYAVRT-AVINAASGR 355 (522)
T ss_dssp -C----HHH---HHHHHHHHHSEECCCSTTHHHHHHHHHH-HHHHHHHTS
T ss_pred -C----hhH---HHHHHHhhcCccCCCCccHHHHHHHHHH-HHHHHHcCC
Confidence 1 111 01122333333333332 334456777 888888887
No 58
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=99.63 E-value=1.4e-15 Score=149.87 Aligned_cols=153 Identities=19% Similarity=0.244 Sum_probs=111.3
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcC--cccC--CceEeecChHHHh---hHH----------
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPREVI---GSI---------- 74 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d--p~~~--Gki~~~d~~~~~~---g~a---------- 74 (315)
.+| |++||||+.+++.+|+||+++|++ +|+||++|++ .+++ |++.+.....+.+ .+.
T Consensus 98 ~~d--Gk~YgvP~~~~~~~l~YNkdlf~~----~P~Twdel~~~a~~l~~~G~~g~~~~~~~~~~~~~~~~~~Gg~~~~~ 171 (465)
T 2zxt_A 98 RYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKY 171 (465)
T ss_dssp BSS--SSBCSEEEEEECCEEECBTTTBSS----CCSSSTTSHHHHTTSCSSSCCSBCCCSSSHHHHHHHHHHTTCEEEEE
T ss_pred EEC--CEEEEeeccccceEEEEEhHhhcC----CCcCHHHHHHHHHHHhcCCcceeEecCcchHHHHHHHHhcCCeeccc
Confidence 455 999999999999999999999987 8999999998 4665 5544332211111 000
Q ss_pred ---------------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-C
Q 036082 75 ---------------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-S 125 (315)
Q Consensus 75 ---------------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-e 125 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|. +
T Consensus 172 ~~g~~d~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~ 251 (465)
T 2zxt_A 172 ENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFK 251 (465)
T ss_dssp ETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHHTCCSBEEECTTTHHHHHHHTCCCCEECCCCGG
T ss_pred ccccccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCcchHHHHHHCCCeeEEEeCCchHHHHhhcCCceEEEeCCCCC
Confidence 224555555443 13456889999999999887776666555677887 775 2
Q ss_pred C----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHHHHHHHhhhCCCCC
Q 036082 126 G----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWI-EFCLQTARALPFKQEVIPGAS 183 (315)
Q Consensus 126 G----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~e~~~~~~ 183 (315)
| ...+..+++|+++++|++ +|++|| +|+++||+|..++. ..++.+
T Consensus 252 g~~~~~~~~~~~~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~-~~g~~P 301 (465)
T 2zxt_A 252 GQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGA 301 (465)
T ss_dssp GSCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCE
T ss_pred CCCCccccccceEEEECCCCCHH------------HHHHHHHHHHcCHHHHHHHHH-hcCCCC
Confidence 2 245567999999999998 999999 99999999999985 455543
No 59
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=99.62 E-value=1.3e-14 Score=137.99 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=104.8
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCC---CCCCChHhhcCc--cc--CCc-eEeecChHH-----HhhHH--------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNL---APIEDWKDLWRP--EL--AGR-ISMVNSPRE-----VIGSI-------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl---~~P~SW~dL~dp--~~--~Gk-i~~~d~~~~-----~~g~a-------- 74 (315)
||++||||+..++.+|+||+++|+++|+ ++|+||++|.+. ++ +|. ..+...... .+...
T Consensus 114 dGk~y~vP~~~~~~~l~Ynkdlf~~aGl~~~~~p~Twde~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (419)
T 4aq4_A 114 TGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENFSAWNGLPFASK 193 (419)
T ss_dssp TCCBSSEEEEEECEEEEEEHHHHHHTTCCTTCCCSBHHHHHHHHHHHHHTTCSEEEEESSHHHHHTHHHHHHTTCCSBHH
T ss_pred CCEEEeccccccceEEEEEhHHHHHcCCCCCCCCCCHHHHHHHHHHHhccccCCCcccccCcccchhhhhhhcccccccc
Confidence 4999999999999999999999999998 458999999874 23 232 111111100 00000
Q ss_pred ----------------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHc-CCCeEE--EeC
Q 036082 75 ----------------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKH-MSNVAV--VPK 124 (315)
Q Consensus 75 ----------------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~-~~~i~~--~Pk 124 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+...... ..++++ +|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~P~ 273 (419)
T 4aq4_A 194 NNGFDGTDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMPY 273 (419)
T ss_dssp HHTTTCTTCCBCCCSHHHHHHHHHHHHHHHHTSBCCCCSSSHHHHHHHTTSEEEEEEEGGGHHHHHHHCCSCEEEEECCB
T ss_pred ccccccCCCeeeeccHHHHHHHHHHHHHHhcCCCCcccchhhHHHhhhcCceEEEEeChHHHHHHHhhCCCceEEEeccC
Confidence 134555555543 23567899999999999988877665543 346665 552
Q ss_pred --CC------ceeeeeeEEEeCC--CCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCC
Q 036082 125 --SG------ASLWADLWAIPAA--SRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (315)
Q Consensus 125 --eG------~~~~~d~~~I~k~--s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P 184 (315)
.+ ..+...+++|+++ ++|++ +|.+||+||+++|.|..+.. ..++.++
T Consensus 274 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~------------aA~~fl~~l~s~e~~~~~~~-~~g~~P~ 330 (419)
T 4aq4_A 274 DADAKDAPQNAIIGGASLWVMQGKDKETYT------------GVAKFLDFLAKPENAAEWHQ-KTGYLPI 330 (419)
T ss_dssp CTTCTTCCCCCCCEEEEEEEESSCCHHHHH------------HHHHHHHHHTSHHHHHHHHH-HHCCBCC
T ss_pred CCCCCCCCcceeecCceEEEEecchhhhHH------------HHHHHHHHhCCHHHHHHHHH-hcCCCCC
Confidence 11 2233456777754 45666 99999999999999999985 4565433
No 60
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=99.60 E-value=4.3e-15 Score=152.95 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=116.8
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecChHH---HhhHH--------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSPRE---VIGSI-------------- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~~~---~~g~a-------------- 74 (315)
||++||||+.+++.+|+||++++++ +|+||+||++. ++ +|...+.....+ .+.+.
T Consensus 136 dGk~YglP~~~~~~~l~YNkdlfee----~P~TWdEL~~~akklk~~G~~~~~~~~~~~~~~~~~l~~~Gg~~~~~~~~~ 211 (653)
T 3osr_A 136 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGK 211 (653)
T ss_dssp TTEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTE
T ss_pred CCEEEEEEecCceeEEEEEhHHhhC----CCCCHHHHHHHHHHHHhCCCceeEeccCchHHHHHHHHHcCCeeeeccCcc
Confidence 3999999999999999999999985 89999999985 33 455443221111 11110
Q ss_pred -----------HHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-----C
Q 036082 75 -----------AVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-----S 125 (315)
Q Consensus 75 -----------~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-----e 125 (315)
...++++.+.++ ..+..+.|.+|+++|.+.|+..+..+...+.++++ +|. .
T Consensus 212 ~d~~~~~~d~~~~~~ale~l~~L~~~g~~~~~~~~~~~~~~f~sGk~am~~~gsw~~~~l~~~~~~~gv~~~P~~~g~~~ 291 (653)
T 3osr_A 212 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS 291 (653)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCC
T ss_pred cccCccccCCHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHCCCEEEEEeChhHHHHHhhcCCCEEEEEcCCCCCCCc
Confidence 234566665544 23567899999999999999988888777788887 675 3
Q ss_pred CceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHhhhCCCCCCCc
Q 036082 126 GASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQEVIPGASPSA 186 (315)
Q Consensus 126 G~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~e~~~~~~P~~ 186 (315)
+...+.++++|+++++|++ +|++||+ ||+|||+|..+++ ..++..|+.
T Consensus 292 ~~~~g~~~~aI~k~Skn~e------------aA~~FI~nfl~S~E~q~~~a~-~~g~~~P~~ 340 (653)
T 3osr_A 292 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL 340 (653)
T ss_dssp CCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCEESB
T ss_pred ceeeccEEEEEECCCCCHH------------HHHHHHHHHccCHHHHHHHHH-hcCCCCCCc
Confidence 4566778999999999998 9999997 9999999999985 556656653
No 61
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A*
Probab=99.60 E-value=4.1e-15 Score=142.19 Aligned_cols=149 Identities=13% Similarity=0.131 Sum_probs=107.6
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHh---hH-------------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVI---GS------------------- 73 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~---g~------------------- 73 (315)
||++|+||+..++.+|+||+++|++ +|+||++|++ + +|+..+.....+.+ .+
T Consensus 130 dG~~y~vP~~~~~~~l~YNkdl~~~----~P~Twdel~~-~-~g~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 203 (402)
T 1urs_A 130 NGTMYSVPVSVQVAAIYYNKKLVPQ----PPQTWAEFVK-D-ANAHGFMYDQANLYFDYAIIGGYGGYVFKDNNGTLDPN 203 (402)
T ss_dssp TTEECSEEEEEEECEEEEETTTCSS----CCCSHHHHHH-H-HHHHCEECCTTCHHHHHHHHHHTTCEEEEEETTEEEEE
T ss_pred CCEEEEecccCcccEEEEehhhhcc----CCCCHHHHHh-c-cCcceeeecCCChhhHHHHHHhcCCeeecCCccccccC
Confidence 3999999999999999999999987 8999999998 4 44433321111110 00
Q ss_pred ------HHHHHHHHHHHhh------------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC--CC----c
Q 036082 74 ------IAVQLNLALLANQ------------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK--SG----A 127 (315)
Q Consensus 74 ------a~~~~a~~~L~~~------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk--eG----~ 127 (315)
....++++.+.++ ..+..+.|.+|+++|.+.++..+..+...+.++++ +|. +| .
T Consensus 204 ~~~~~~~~~~~al~~~~~l~~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~~g~~~~~ 283 (402)
T 1urs_A 204 NIGLDTPGAVQAYTLMRDMVSKYHWMTPSTNGSIAKAEFLAGKIGMYVSGPWDTADIEKAKIDFGVTPWPTLPNGKHATP 283 (402)
T ss_dssp EEESSSHHHHHHHHHHHHHHHTSCSCCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEEECCCCCTTSCCCCC
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHHhcCCeeEEEcCcchHHHHHhcCCceEEEeCCCCCCCCCccc
Confidence 0223455444332 12467889999999999888777666655668887 775 24 2
Q ss_pred eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCC
Q 036082 128 SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGAS 183 (315)
Q Consensus 128 ~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~ 183 (315)
..+..+++|+++++|++ +|++||+||+++|.|..++. ..++.+
T Consensus 284 ~~~~~~~~i~~~s~~~e------------~A~~fl~~l~s~e~~~~~~~-~~g~~P 326 (402)
T 1urs_A 284 FLGVITAFVNKESKTQA------------ADWSLVQALTSAQAQQMYFR-DSQQIP 326 (402)
T ss_dssp EEEEEEEEEBTTCSCHH------------HHHHHHHHHTSHHHHHHHHH-HHCCEE
T ss_pred eecceEEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHh-hcCCCC
Confidence 34567899999999998 99999999999999999885 345433
No 62
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=99.60 E-value=4.4e-15 Score=142.13 Aligned_cols=156 Identities=17% Similarity=0.291 Sum_probs=110.5
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--ccC--CceEeecCh------HHHh-----hHH------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--GRISMVNSP------REVI-----GSI------ 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~--Gki~~~d~~------~~~~-----g~a------ 74 (315)
||++||||+..++.+|+||+++|+++|+++|+||+||++. +++ |...+.... ...+ ...
T Consensus 116 dG~~y~vP~~~~~~~l~Ynkdl~~~aGl~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (401)
T 2heu_A 116 NEKVYNVPFTANAYGIYYNKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEA 195 (401)
T ss_dssp TTBCCCEECBBCCEEEEEEHHHHHHHTCCCCCSHHHHHHHHHHHHHTTSCCBCCCTTCGGGGHHHHHHHHHHHHTSHHHH
T ss_pred CCEEEEEecccCceEEEEeHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCcCeEecCccccchhhHHHHHHHHhcCCcCCh
Confidence 4999999999999999999999999999999999999983 443 433222111 0000 000
Q ss_pred -----------------HHHHHHHHHHhh--------------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCC--CeEE
Q 036082 75 -----------------AVQLNLALLANQ--------------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMS--NVAV 121 (315)
Q Consensus 75 -----------------~~~~a~~~L~~~--------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~--~i~~ 121 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++..+..+...++ ++++
T Consensus 196 ~~~~~~~~~g~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~ 275 (401)
T 2heu_A 196 NQYLRYSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGDVLMTPNGSWAITAINEQKPNFKIGT 275 (401)
T ss_dssp HHHHTSSCTTCCCTTSHHHHHHHHHHHGGGSTTCBCTTGGGCCHHHHHHHHHTTSSSEEEEETTHHHHHHTTCCSSCEEE
T ss_pred HHHHHHHhcCCcccCCHHHHHHHHHHHHHHHCCCCCCCcCCCChHHHHHHHHcCCceEEecCcccHHHHHhhCcccceeE
Confidence 124556666543 1245688999999999988877666655443 5666
Q ss_pred --EeC--CCce--ee-ee-eEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCC
Q 036082 122 --VPK--SGAS--LW-AD-LWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (315)
Q Consensus 122 --~Pk--eG~~--~~-~d-~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P 184 (315)
+|. +|.. +. .+ +++|+++++|++ +|.+||+|++++|.|..++. ..++.++
T Consensus 276 ~~~P~~~~g~~~~~~g~~~~~~i~~~s~~~e------------~A~~fi~~l~s~e~~~~~~~-~~g~~P~ 333 (401)
T 2heu_A 276 FMIPGKEKGQSLTVGAGDLAWSISATTKHPK------------EANAFVEYMTRPEVMQKYYD-VDGSPTA 333 (401)
T ss_dssp ECBCCSSTTCCBEEECBSSEEEEBTTCSCHH------------HHHHHHHHHTSHHHHHHHHH-HHCCCBC
T ss_pred EECCCCCCCCcccccCCcceEEEECCCCCHH------------HHHHHHHHHcChHHHHHHHH-hcCCCCC
Confidence 674 3432 22 34 599999999998 99999999999999999875 3455433
No 63
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=99.59 E-value=1.3e-14 Score=139.24 Aligned_cols=148 Identities=15% Similarity=0.165 Sum_probs=104.1
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCC-CCCChHhhcCc--ccC--CceEeecChHH---Hh-hH---------
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLA-PIEDWKDLWRP--ELA--GRISMVNSPRE---VI-GS--------- 73 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~-~P~SW~dL~dp--~~~--Gki~~~d~~~~---~~-g~--------- 73 (315)
.+| |++||||+..++.+|+||+++|+++|++ +|+||++|++. +++ |...+.-...+ .+ .+
T Consensus 117 ~~~--G~~y~vP~~~~~~~l~Ynkdl~~~aGl~~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~~ 194 (412)
T 2z8f_A 117 QVG--GKAYGLPQDTGPLVYFYNKAEFEKLGITEIPQTADEFIAAAKTAAAAGKYIMSYQPDEAGNMISGLAGASGGWYK 194 (412)
T ss_dssp EET--TEECEEECBCCBEEEEEEHHHHHHTTCCSCCCBHHHHHHHHHHHHHTTCBSCBCCGGGTTTHHHHHHHTTCCSEE
T ss_pred ccC--CeEEEeeccCCceEEEEeHHHHHHcCCCCCCCCHHHHHHHHHHHHhcCCceeecCCcccchHHHHHHHhcCceEe
Confidence 455 9999999999999999999999999998 99999999974 332 33111000111 00 00
Q ss_pred ------------HHHHHHHHHHHhh------------cHHHHHHHHcCCEEEEEEehhhHHHHHHc-----CCCeEE--E
Q 036082 74 ------------IAVQLNLALLANQ------------SAHHLKAFGIGDVWVAVGWSSDVLPAVKH-----MSNVAV--V 122 (315)
Q Consensus 74 ------------a~~~~a~~~L~~~------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~-----~~~i~~--~ 122 (315)
....++++.+.++ +.+..+.|.+|+++|.+.++..+..+... ..++++ +
T Consensus 195 ~d~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~ 274 (412)
T 2z8f_A 195 VKGDSWVVNTETDGSKATADFYQQLLDAKAATTNPRWDPSFDASIKDGSLIGTVAAAWEAPLFMTSSGGTGSGEWQVAQL 274 (412)
T ss_dssp EETTEEEECCCCHHHHHHHHHHHHHHHTTCSBCCCTTSHHHHHHHHTTCBCEEEEEGGGHHHHHHHHTTTTTTTEEEEEC
T ss_pred cCCCeeeecCCCHHHHHHHHHHHHHHHcCCcCccccCCHHHHHHHhCCCEEEEecccchhhHHhhhCCcCcccceEEEcC
Confidence 0234555555443 23556789999999999877665554432 246787 7
Q ss_pred eC--CCc----eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcH-HHHHH
Q 036082 123 PK--SGA----SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQT-ARALP 173 (315)
Q Consensus 123 Pk--eG~----~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllsp-e~q~~ 173 (315)
|. +|. .....+++|+++++|++ +|++||+||+++ +.|..
T Consensus 275 P~~~~g~~~~~~~~~~~~~i~~~s~~~e------------~A~~fl~~l~s~~e~~~~ 320 (412)
T 2z8f_A 275 GDWFGNAGKTGPDGGSAVAVLKNSKHPK------------EAMEFLDWFNTQVPDLVS 320 (412)
T ss_dssp CBCSSCTTCBCBCCCEEEEEBTTCSCHH------------HHHHHHHHHTTCHHHHHH
T ss_pred CCCCCCCCccccCCcceEEEeCCCCCHH------------HHHHHHHHHccCHHHHHh
Confidence 75 242 34457899999999998 999999999997 77765
No 64
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=99.59 E-value=2.1e-14 Score=137.40 Aligned_cols=150 Identities=15% Similarity=0.232 Sum_probs=102.2
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--ccC-----CceEeecChHHHhh----H---H---
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA-----GRISMVNSPREVIG----S---I--- 74 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~-----Gki~~~d~~~~~~g----~---a--- 74 (315)
.+| |++||||+..++.+|+||+++|+++|+++|+||++|.+. +++ |...+.....+.+. + .
T Consensus 106 ~~d--Gk~y~vP~~~~~~~l~YNkdl~~~aGl~~P~Twdel~~~a~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ 183 (408)
T 2uvj_A 106 TVN--GKLNGIPISVTARIFYFNDATWAKAGLEYPKTWDELLAAGKVFKEKLGDQYYPVVLEHQDTLALIRSYMTQKYNI 183 (408)
T ss_dssp EET--TEECCEEEEEEEEEEEEEHHHHHHHTCCCCSSHHHHHHHHHHHHHHTCTTCBSCCCCHHHHHHHHHHHHHHHHCC
T ss_pred EEC--CEEEEeeccccceEEEEcHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCCeeeeeccccchHHHHHHHHHHhcCC
Confidence 455 999999999999999999999999999999999999874 332 33333222211110 0 0
Q ss_pred ---------------HHHHHHHHHHhh-------cHH-----------HHHHHHcCCEEEEEEehhhHHHHHHc---CCC
Q 036082 75 ---------------AVQLNLALLANQ-------SAH-----------HLKAFGIGDVWVAVGWSSDVLPAVKH---MSN 118 (315)
Q Consensus 75 ---------------~~~~a~~~L~~~-------~~~-----------~~~~~~~Gev~~~~~ws~~~~~~~~~---~~~ 118 (315)
...++++.+.++ ... ....|.+|++.+.+.|+..+...... ..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~ 263 (408)
T 2uvj_A 184 PTIDEANKKFAYSPEQWVEFFTMYKTMVDNHVMPSTKYYASFGKSNMYEMKPWINGEWAGTYMWNSTITKYSDNLTKPAK 263 (408)
T ss_dssp CSEETTTTEECSCHHHHHHHHHHHHHHHHTTSSCCHHHHHTTCSSCGGGSHHHHTTSBCEEEEEGGGTHHHHTTSCTTCC
T ss_pred CcccCCCCeeccChHHHHHHHHHHHHHHHCCCCCChHHhhhccccccccCCceeccceeEEEeecchHHHhhccccCCCc
Confidence 124555555443 111 24578999999999998766555432 346
Q ss_pred eEE--EeC-CCc---ee---eeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHH-HHHHH
Q 036082 119 VAV--VPK-SGA---SL---WADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTAR-ALPFK 175 (315)
Q Consensus 119 i~~--~Pk-eG~---~~---~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~-q~~~~ 175 (315)
+++ +|. +|. .. ...+++|+++++|++ +|.+||+||++++. +..+.
T Consensus 264 ~~~~~~P~~~~~~~~~~~~~~~~~~~i~~~s~~~e------------~A~~fl~~l~s~~~~~~~~~ 318 (408)
T 2uvj_A 264 LVLGPYPMLPGAKDAGLFFKPAQMLSIGKSTKHPQ------------ESAMLINFLLNSKEGVEALG 318 (408)
T ss_dssp EEECCCCCCTTCSCCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHHHTSHHHHHHHT
T ss_pred eEEEeCCcCCCCCCCceeeccceEEEEECCCCCHH------------HHHHHHHHHcCCHHHHHHHh
Confidence 777 775 221 11 246799999999998 99999999998654 44444
No 65
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=99.56 E-value=5.5e-14 Score=134.44 Aligned_cols=158 Identities=17% Similarity=0.222 Sum_probs=106.8
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCC-CCCCChHhhcCc--ccC--C------ceEee--cCh-H----HHhhH
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNL-APIEDWKDLWRP--ELA--G------RISMV--NSP-R----EVIGS 73 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl-~~P~SW~dL~dp--~~~--G------ki~~~--d~~-~----~~~g~ 73 (315)
.+| |++||||+..++.+++||+++|+++|+ ++|+||++|.+- +++ | ...+. ... . ..+.+
T Consensus 109 ~~d--Gk~ygvP~~~~~~~l~Ynkdlf~~aGl~~~P~Twdel~~~a~~l~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~ 186 (409)
T 1eu8_A 109 KQG--GKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGERETNPNFWGFVWQGKQYEGLVCDFVEY 186 (409)
T ss_dssp EET--TEECCEEEEEEECEEEEEHHHHHHTTCCSCCSBHHHHHHHHHHHHHHHTTTCTTCEEEECCCSSSHHHHHHHHHH
T ss_pred cCC--CEEEEEeeeccceEEEEEHHHHHhcCCCCCCCCHHHHHHHHHHHHhcccCCCCCcceEEEecCCCcchhhHHHHH
Confidence 455 999999999999999999999999995 899999999863 221 1 22221 111 0 00000
Q ss_pred H----------------------HHHHHHHHHHhh--------c--------HHHHHHHHcCCEEEEEEehhhHHHHHHc
Q 036082 74 I----------------------AVQLNLALLANQ--------S--------AHHLKAFGIGDVWVAVGWSSDVLPAVKH 115 (315)
Q Consensus 74 a----------------------~~~~a~~~L~~~--------~--------~~~~~~~~~Gev~~~~~ws~~~~~~~~~ 115 (315)
. ...++++.+.++ . .+..+.|.+|+++|.+.|+.....+...
T Consensus 187 ~~~~Gg~~~~~~~g~~~~~~~~~~~~~al~~~~~l~~~~g~~~~~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~ 266 (409)
T 1eu8_A 187 VYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEPVRLMFQQGNAAFERNWPYAWGLHNAD 266 (409)
T ss_dssp HHTTTCCSEEEETTEEEECTTCHHHHHHHHHHHHHHHTSCCSCGGGGTTCCHHHHHHHHHTTCEEEEEECTHHHHHHTST
T ss_pred HHhcCCceeccccCccceeecCHHHHHHHHHHHHHHhhcCcCCCcccccCCHHHHHHHHhCCCEEEEecCHHHhhccCCC
Confidence 0 123444433221 1 1456789999999999887666555432
Q ss_pred ----CCCeEE--EeC--CC---ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCC
Q 036082 116 ----MSNVAV--VPK--SG---ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (315)
Q Consensus 116 ----~~~i~~--~Pk--eG---~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P 184 (315)
..++++ +|. .| ......+++|+++|+|++ +|.+||+|+++++.|..+.. ..++ .|
T Consensus 267 ~~~~~~~~~~~~~P~~~~~~~~~~~gg~~~~i~~~s~~~e------------~A~~fl~~l~s~e~~~~~~~-~~g~-~P 332 (409)
T 1eu8_A 267 DSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKA------------LAWEFVKFVESYSVQKGFAM-NLGW-NP 332 (409)
T ss_dssp TCTTTTCEEEECCCBCTTSCCCCBEEEEEEEEBTTCSCHH------------HHHHHHHHHTSHHHHHHHHH-HTCC-CB
T ss_pred CccccCceEEEeCCCCCCCCcccccCceeEEecCCCCCHH------------HHHHHHHHHhCHHHHHHHHH-hCCC-CC
Confidence 235777 674 22 123446899999999998 99999999999999998874 3444 45
Q ss_pred C
Q 036082 185 S 185 (315)
Q Consensus 185 ~ 185 (315)
.
T Consensus 333 ~ 333 (409)
T 1eu8_A 333 G 333 (409)
T ss_dssp S
T ss_pred c
Confidence 4
No 66
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.56 E-value=2.3e-14 Score=145.83 Aligned_cols=148 Identities=19% Similarity=0.240 Sum_probs=105.3
Q ss_pred CCcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--cc--CCceEeecChHH---HhhH----------
Q 036082 11 GEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSPRE---VIGS---------- 73 (315)
Q Consensus 11 ~~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~--~Gki~~~d~~~~---~~g~---------- 73 (315)
..+| |++||||+.+++.+|+|||++|++ +|+||+||.+. ++ +|+..+.-...+ .+.+
T Consensus 97 ~~~~--Gk~ygvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~ 170 (694)
T 3dm0_A 97 VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFK 170 (694)
T ss_dssp TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEE
T ss_pred EEEC--CEEEEEEEEeeeeEEEEchHHccc----CCCCHHHHHHHHHHhhhCCcceeEeccCcHHHHHHHHHhCCceEEe
Confidence 4556 999999999999999999999986 89999999763 33 354332211111 0100
Q ss_pred ---------------HHHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-
Q 036082 74 ---------------IAVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK- 124 (315)
Q Consensus 74 ---------------a~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk- 124 (315)
....++++.+.++ ......+|.+|+++|.+.++..+......+.++++ +|.
T Consensus 171 ~~~g~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~gv~~~P~~ 250 (694)
T 3dm0_A 171 YENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTF 250 (694)
T ss_dssp EETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCEE
T ss_pred cCCCcccccccCCCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHhCCCeeEEEcCccchhhHhhcCCcceeecCCCC
Confidence 0123445544433 12346789999999999988777776666677776 663
Q ss_pred CC----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHHHHHHHh
Q 036082 125 SG----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE-FCLQTARALPFKQ 176 (315)
Q Consensus 125 eG----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~ 176 (315)
+| ..++..+++|+++++|++ +|++||. |++++|.+..+.+
T Consensus 251 ~g~~~~~~~g~~~~~i~~~s~~~~------------~A~~f~~~~~~~~~~~~~~~~ 295 (694)
T 3dm0_A 251 KGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK 295 (694)
T ss_dssp TTEECCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTTSHHHHHHHHH
T ss_pred CCCCCCceeeeEEEEEEcCCCCHH------------HHHHHHHHHhcCHHHHHHHHh
Confidence 22 334567889999999998 9999995 8999999988875
No 67
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli}
Probab=99.56 E-value=4.6e-14 Score=145.44 Aligned_cols=133 Identities=18% Similarity=0.144 Sum_probs=90.0
Q ss_pred HHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-----CCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHH
Q 036082 89 HHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-----SGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQW 161 (315)
Q Consensus 89 ~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-----eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~F 161 (315)
+..+.|.+|+++|.+.++..+..+...+.++++ +|. .+..++..+++|+++|+|++ +|.+|
T Consensus 494 ~~~~~F~sGkvam~~~g~w~~~~~~~~~~~~gvaplP~~~g~~~~~~~gg~~~~I~k~Skn~e------------aA~~F 561 (661)
T 3osq_A 494 IAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEF 561 (661)
T ss_dssp HHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH------------HHHHH
T ss_pred HHHHHHHCCCeEEEEeChhHHHHHHhcCCCEEEEeCCCCCCCCCcccccceEEEEECCCCCHH------------HHHHH
Confidence 567889999999999998888777766778887 675 23456678899999999998 99999
Q ss_pred HH-HHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCCCCcccccCCCcHHHhhccccccCCC--HHHHHHHHH
Q 036082 162 IE-FCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFEFLEPLS--EATLSDMSG 238 (315)
Q Consensus 162 In-fllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~~~~~ 238 (315)
|+ |+++||.|..+.. ..++.+|+. +.. .+++.+ .| .+ ..-.+.+......+..+ ......+..
T Consensus 562 l~~flts~E~q~~~~~-~~g~~~p~~-~~~----~~~~~~-~P----~~---~~~~e~l~~a~~~P~~p~~~~i~~~l~~ 627 (661)
T 3osq_A 562 LENYLLTDEGLEAVNK-DKPLGAVAL-KSY----EEELVK-DP----RI---AATMENAQKGEIMPNIPQMSAFWYAVRT 627 (661)
T ss_dssp HHHTTSSHHHHHHHHH-HSCCCEESB-HHH----HHHHTT-SH----HH---HHHHHHHHHSEECCCCTTHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHH-hCCCCCCcc-HHH----HHHHhh-Ch----HH---HHHHHHHhhCccCCCCCcHHHHHHHHHH
Confidence 99 9999999999985 455555653 222 123222 11 11 11123344443333332 344456677
Q ss_pred HHHHhcccCC
Q 036082 239 WEIGSGQLGQ 248 (315)
Q Consensus 239 ~~W~~ikag~ 248 (315)
.++++..|+
T Consensus 628 -~l~~vl~G~ 636 (661)
T 3osq_A 628 -AVINAASGR 636 (661)
T ss_dssp -HHHHHHTTS
T ss_pred -HHHHHHcCC
Confidence 788888887
No 68
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=99.56 E-value=5.1e-15 Score=142.76 Aligned_cols=154 Identities=14% Similarity=0.115 Sum_probs=108.9
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCC---CChHhhcCc--ccC--C-ceEeecChH--HHhh-------HH----
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPI---EDWKDLWRP--ELA--G-RISMVNSPR--EVIG-------SI---- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P---~SW~dL~dp--~~~--G-ki~~~d~~~--~~~g-------~a---- 74 (315)
||++||||+..++.+|+||+++|+++|+++| +||++|++. +++ | .+.+..... ..+. ..
T Consensus 146 dGk~ygvP~~~~~~~l~YNkdl~~~aGl~~P~~~~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 225 (430)
T 2w7y_A 146 DGKIYTVHEQLFTMGLWYNKDIFAKAGAKTPDQWNTWDDFTQAMASIRKQDGVYAFGAGEPSIRLFNTVLGTTENGRKLL 225 (430)
T ss_dssp TTEECCBCSBCEEECEEEEHHHHHHHTCCCGGGCCSHHHHHHHHHHHHTSSSCEEECCBTTHHHHHHHHHTTSHHHHHHT
T ss_pred CCeEEEeeccccceEEEEeHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCceEeeCCchHHHHHHHHHhhhcccceec
Confidence 3999999999999999999999999999877 899999975 443 3 344432111 1110 00
Q ss_pred ------------HHHHHHHHHHhh------------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCC-Cc
Q 036082 75 ------------AVQLNLALLANQ------------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKS-GA 127 (315)
Q Consensus 75 ------------~~~~a~~~L~~~------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pke-G~ 127 (315)
...++++.+.++ ..+..+.|.+|+++|.+.++.....+... +++++ +|.. +.
T Consensus 226 ~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~-~~~~~~~~P~~~~~ 304 (430)
T 2w7y_A 226 DKPLTKEGIESKEFADALKMVMKEIQANGSKNAGGDANAYSKDFQEGKSAVFFNGVWASGEMSKN-PSLAPGIYPAGVAI 304 (430)
T ss_dssp TSCCCTTTTTSHHHHHHHHHHHHHHHHTCGGGCSBCHHHHHHHHHTTSEEEECCCGGGHHHHTTS-TTEEEECBGGGEEE
T ss_pred cccccccccCCHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHhcCCeEEEEcChhhhhhhhcC-CCCceeccCCCccc
Confidence 123455554433 12456789999999998877665555433 67887 7753 23
Q ss_pred eeeeeeEEEeCC--CCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCC
Q 036082 128 SLWADLWAIPAA--SRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGAS 183 (315)
Q Consensus 128 ~~~~d~~~I~k~--s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~ 183 (315)
..+..+++|+++ ++|++ +|++||+||+++|.|..+.. ..++.+
T Consensus 305 ~~~~~~~~i~~~~~s~~~e------------~A~~fl~~l~s~e~~~~~~~-~~g~~P 349 (430)
T 2w7y_A 305 SSSGGGITISSKMSEAKQK------------LALEFLKYMTSDDVQKVIFE-KVGANP 349 (430)
T ss_dssp EECCCCEEEBSSSCHHHHH------------HHHHHHHHHTSHHHHHHHHH-TSCSCB
T ss_pred ccCCcceEEecCCCcccHH------------HHHHHHHHhcCHHHHHHHHH-HhCCCC
Confidence 345578999997 67887 99999999999999999884 455543
No 69
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=99.54 E-value=2.4e-14 Score=132.03 Aligned_cols=143 Identities=11% Similarity=0.164 Sum_probs=105.5
Q ss_pred EeeeeeeceEEEEEecccccccCC-CCCCChHhhc-CcccCCceEeecChHHHhhHH---HHH--------HHHHHHH-h
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNL-APIEDWKDLW-RPELAGRISMVNSPREVIGSI---AVQ--------LNLALLA-N 85 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl-~~P~SW~dL~-dp~~~Gki~~~d~~~~~~g~a---~~~--------~a~~~L~-~ 85 (315)
+.+|+.++..+|+||++.....++ .+|+||.||+ +|+ ++|++.+...+..|.. .+. ..++.|. +
T Consensus 83 ~~~~~~~~~~vi~~~~~~~~~~~i~~~p~sw~dll~~p~--~~i~~~~p~~~~~G~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (296)
T 3cg1_A 83 FYVLFATNEIVIAFTDKSRYVEEMKSNPDKWYEILARED--VRFGFSDPNQDPCGYRSLMVIKLADLYYGKEIFKELIEE 160 (296)
T ss_dssp CCEEEEECCEEEEECTTSTTHHHHHHCGGGHHHHHTSTT--CCEEEECTTTCHHHHHHHHHHHHHHHHHTSCHHHHHTTT
T ss_pred cceecccccEEEEEcCCCchhcccCCCCCCHHHHhcCCC--cEEEeCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHhc
Confidence 578999999999999986321111 1579999987 564 6899987543334422 111 2244453 1
Q ss_pred ----------------------h------cHHHHHHHHcCCEEEEEEehhhHHHHH------------------HcCCCe
Q 036082 86 ----------------------Q------SAHHLKAFGIGDVWVAVGWSSDVLPAV------------------KHMSNV 119 (315)
Q Consensus 86 ----------------------~------~~~~~~~~~~Gev~~~~~ws~~~~~~~------------------~~~~~i 119 (315)
. ..+..+.+.+|++++++.|.+++.... +.+.++
T Consensus 161 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~~~i~~~s~a~~~~~~~~~~p~~~~~~~~~~~~~~~~v 240 (296)
T 3cg1_A 161 NTNIYSNGTQIYAPKEITVNPGKIVIRPKETDLLGLVESGSIDYIFIYKSVAKQHNLSYITLPSEINLGDFSKEKFYGQI 240 (296)
T ss_dssp TBSCEEETTEEEECSSCCBCTTTEEEESSGGGGHHHHHHTSSSEEEEEHHHHHHTTCEEEECCTTTSSCCGGGHHHHTTC
T ss_pred ccccccCccccccccccccccccceecCchHHHHHHHhCCCCCEEEEEhhHHHHcCCCeEecChhhccccccccccccce
Confidence 1 235778899999999999999887532 234578
Q ss_pred EE-EeCCC----ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 120 AV-VPKSG----ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 120 ~~-~PkeG----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
.+ +|++| ...+...++|+|+++|++ +|++||+||+|||+|+.+.+
T Consensus 241 ~~~~p~~g~~~~~~~~~~~~~i~k~a~~~~------------~A~~Fi~fl~s~e~q~~~~~ 290 (296)
T 3cg1_A 241 SITLGSTGKTIKAKPIVYGVTVLKDAPNRE------------VAIEFLRYLLSENGKRIFEK 290 (296)
T ss_dssp EEEETTTCCEEECCCCEEEEEECTTCTTHH------------HHHHHHHHHHSHHHHHHHHH
T ss_pred eEEecCCcccccCceeeeeEEEeCCCCCHH------------HHHHHHHHHhChHHHHHHHH
Confidence 99 99998 455678999999999998 99999999999999999874
No 70
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=99.54 E-value=2.5e-14 Score=150.08 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=102.7
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--ccC--CceEeecC---hHHHhhH---------------
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--GRISMVNS---PREVIGS--------------- 73 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~--Gki~~~d~---~~~~~g~--------------- 73 (315)
||++||+|+.+++.+++||+++|++ +|+||+||++. +++ |+..+.-. ....+.+
T Consensus 104 dGk~YgvP~~~~~~~l~YNkdlf~~----~P~TWdEl~~~a~klk~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~ 179 (805)
T 2nvu_B 104 NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGK 179 (805)
T ss_dssp TTEECEEEEEEEECEEEECTTTCSS----CCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEEecccceeEEEEEhHhhcC----CCcCHHHHHHHHHHHHhcCCCceEeecCchHHHHHHHHhcCCceeeccCCc
Confidence 4999999999999999999999985 89999999753 443 54332211 1111111
Q ss_pred ----------HHHHHHHHHHHhh-----------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC-CC---
Q 036082 74 ----------IAVQLNLALLANQ-----------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK-SG--- 126 (315)
Q Consensus 74 ----------a~~~~a~~~L~~~-----------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk-eG--- 126 (315)
....++++.+.++ ..+..+.|.+|+++|.+.++..+......+.++++ +|. +|
T Consensus 180 ~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~g~~~~P~~~g~~~ 259 (805)
T 2nvu_B 180 YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS 259 (805)
T ss_dssp EEEEEEETSSHHHHHHHHHHHHHHHSSSCCTTCCHHHHHHHHTTTCEEEEEECTTTTTTTTTTTCCCCCBCCCBCSSSCC
T ss_pred ccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHCCCEEEEEeChhhHHHHhhcCCCeEEEECCCCCCCCc
Confidence 0124555555443 12456889999999999877655444334456666 675 33
Q ss_pred -ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHHHHHHHh
Q 036082 127 -ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWI-EFCLQTARALPFKQ 176 (315)
Q Consensus 127 -~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~ 176 (315)
...+..+++|+++++|++ +|++|| +|+++||.|..+.+
T Consensus 260 ~~~~g~~~~~I~~~sk~~e------------aA~~Fi~~fl~s~e~q~~~~~ 299 (805)
T 2nvu_B 260 KPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK 299 (805)
T ss_dssp CCCEEEEEEEEBSSCSTTH------------HHHHHHHTTTSSHHHHHHHHT
T ss_pred cceecceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh
Confidence 345678999999999998 999999 59999999998874
No 71
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=99.51 E-value=5.2e-14 Score=132.52 Aligned_cols=147 Identities=13% Similarity=0.199 Sum_probs=101.8
Q ss_pred CcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc--ccCCc------e-Eee-c-ChH----HH-hhH--
Q 036082 12 EIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELAGR------I-SMV-N-SPR----EV-IGS-- 73 (315)
Q Consensus 12 ~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~Gk------i-~~~-d-~~~----~~-~g~-- 73 (315)
.+| |++||||+.+++.+|+||++++.. ++|+||+||++. +++.+ + .+. + ... .. +.+
T Consensus 92 ~~~--G~~ygvP~~~~~~~l~YNkd~~g~---~~P~Twdel~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 166 (371)
T 3thi_A 92 KRN--GEVYGLPQILCTNLLFYRKGDLKI---GQVDNIYELYKKIGTSHSEQIPPPQNKGLLINMAGGTTKASMYLEALI 166 (371)
T ss_dssp EET--TEECCEEEEEECEEEEEETTCHHH---HTCCBHHHHHHHHCCCCCCCSSCCEEEEEEECCCSHHHHHHHHHHHHH
T ss_pred EEC--CEEEEecccCceeEEEEeCccccC---CCCCcHHHHHHHHHhhcccCCCCCCcCceeeecCCCcchHHHHHHHHH
Confidence 455 999999999999999999997653 489999999973 33321 1 111 1 100 00 000
Q ss_pred -------------------HHHHHHHHHHHhh----c----------HHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeE
Q 036082 74 -------------------IAVQLNLALLANQ----S----------AHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVA 120 (315)
Q Consensus 74 -------------------a~~~~a~~~L~~~----~----------~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~ 120 (315)
....++++.+.++ . ....+.|.+|+++|.+.|+...........+++
T Consensus 167 ~~gg~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~ 246 (371)
T 3thi_A 167 DVTGQYTEYDLLPPLDPLNDKVIRGLRLLINMAGEKPSQYVPEDGDAYVRASWFAQGSGRAFIGYSESMMRMGDYAEQVR 246 (371)
T ss_dssp HHHTCCCCCSSCCCSSSCCHHHHHHHHHHHHHHCHHHHHCCCTTCCTTHHHHHHHHTBEEEEEEETTHHHHHGGGGGTEE
T ss_pred hcCCcccccccccccccCCHHHHHHHHHHHHHhccccCcccccCCchhHHHHHHhCCeeeEEecchhhhhHhhhcccceE
Confidence 0123445544443 0 114578999999999999877765554444788
Q ss_pred E--EeC----CCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHH
Q 036082 121 V--VPK----SGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFK 175 (315)
Q Consensus 121 ~--~Pk----eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (315)
+ +|. ++..++.++++|+++++|++ +|++||+||+++|++..+.
T Consensus 247 ~~~~P~~~~~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~~l~s~e~~~~~~ 295 (371)
T 3thi_A 247 FKPISSSAGQDIPLFYSDVVSVNSKTAHPE------------LAKKLANVMASADTVEQAL 295 (371)
T ss_dssp EECCBSCSSCCCCEEEEEEEEEETTCSCHH------------HHHHHHHHHHSHHHHHHHH
T ss_pred EEeCCCCCCCCCceeeeeEEEEcCCCCCHH------------HHHHHHHHHcCcHHHHHhh
Confidence 7 664 24567788999999999998 9999999999999954444
No 72
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=99.48 E-value=1e-13 Score=127.33 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=102.3
Q ss_pred eeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhh---H-HH-----------HHHHHHHHHh
Q 036082 21 AAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG---S-IA-----------VQLNLALLAN 85 (315)
Q Consensus 21 ~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g---~-a~-----------~~~a~~~L~~ 85 (315)
++|| +++.+|+||++.. .+|+||+||+++++ +|++.+......+ + .. ..++++.|.+
T Consensus 90 ~~p~-~~~~~l~yn~~~~-----~~p~tw~dL~~~~~--ki~~~~p~~~~~~~~~~~~~~~~~~~~~gg~~~~a~~~l~~ 161 (310)
T 1sbp_A 90 SAPY-TSTIVFLVRKGNP-----KQIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAEDFVKA 161 (310)
T ss_dssp HCSE-EBCEEEEEETTCT-----TCCCSGGGGGSTTC--CEECCCTTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCce-eEEEEEEEeCCCC-----CCCCCHHHHcCccc--eEecCCCcccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5677 6789999999973 27999999999887 7887653221111 0 00 1244555543
Q ss_pred h---------cH--HHHHHHHcCCEEEEEEehhhHHHHHHc-C-CCeEE-EeCCCceeeeeeEEEeCCC----CCccccc
Q 036082 86 Q---------SA--HHLKAFGIGDVWVAVGWSSDVLPAVKH-M-SNVAV-VPKSGASLWADLWAIPAAS----RLETKQI 147 (315)
Q Consensus 86 ~---------~~--~~~~~~~~Gev~~~~~ws~~~~~~~~~-~-~~i~~-~PkeG~~~~~d~~~I~k~s----~~~~~~~ 147 (315)
+ +. ...+.+.+|++++++.|++........ + .++++ +|++|.+ +..+++|++++ +|++
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~v~P~~g~~-~~~~~~i~~~~~~~s~~~~--- 237 (310)
T 1sbp_A 162 LFKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLATNELGKDKFEIVTPSESIL-AEPTVSVVDKVVEKKDTKA--- 237 (310)
T ss_dssp HHHTEEECCSSHHHHHHHHHTSCCCSEEEEEHHHHHHHHHTTTTTTEEEECCSEEEC-BCCEEEECHHHHHHHTCHH---
T ss_pred HHhcCcccCCccHHHHHHHHhCCCccEEEeechHHHHHHHhcCCCceEEEccCCcee-ccCCeEEeccccccccCHH---
Confidence 3 12 256677899999999999888766554 5 68999 9986654 45688999977 8988
Q ss_pred CCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCC
Q 036082 148 GGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPS 185 (315)
Q Consensus 148 ~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~ 185 (315)
+|++||+|++|+|+|..+. +. ++.+++
T Consensus 238 ---------~A~~fi~fl~s~e~q~~~~-~~-g~~p~~ 264 (310)
T 1sbp_A 238 ---------VAEAYLKYLYSPEGQEIAA-KN-FYRPRD 264 (310)
T ss_dssp ---------HHHHHHHGGGSHHHHHHHH-HT-TCEESC
T ss_pred ---------HHHHHHHHHcChHHHHHHH-Hc-CCCCCC
Confidence 9999999999999999887 33 654443
No 73
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=99.45 E-value=1.5e-13 Score=132.02 Aligned_cols=154 Identities=12% Similarity=0.145 Sum_probs=97.6
Q ss_pred CCCeEeeeeeeceEEEEEecccccccCCC-CCCChHhhcCc--ccC----CceEeecC-------hHH---HhhH---H-
Q 036082 16 RGKICAAPYRWGTVVIAYKKSKFRKHNLA-PIEDWKDLWRP--ELA----GRISMVNS-------PRE---VIGS---I- 74 (315)
Q Consensus 16 dG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~-~P~SW~dL~dp--~~~----Gki~~~d~-------~~~---~~g~---a- 74 (315)
||++||||+..++.+|+||+++|+++|++ ||+||++|.+. +++ +.+.+... ... .+.. .
T Consensus 136 dGk~y~~P~~~~~~~l~Ynkdlf~~aGl~~pP~Twde~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (433)
T 4gqo_A 136 DGNQYVLPVYSNPILFAWRLDTLKELGYDAPPKTYSEALEVGKKLKAKYPDKVLWAKGDLSDPTAWMRWFDFFPLYDAAS 215 (433)
T ss_dssp TSCCCCEEEEEEECEEEECHHHHHHTTCSSCCCBHHHHHHHHHHHHHHCTTCEEEECGGGGCCCGGGGGGTHHHHHHHHT
T ss_pred CCEEEEEeccCceEEEEEehhhHHHcCCCCCCCCHHHHHHHHHHHHHhCCCCceeccccccccchhhhhhHHHHHHhhhc
Confidence 49999999999999999999999999985 69999999863 221 22222110 000 0000 0
Q ss_pred ----------------HHHHHHHHHHhh-------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCC------CeEE----
Q 036082 75 ----------------AVQLNLALLANQ-------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMS------NVAV---- 121 (315)
Q Consensus 75 ----------------~~~~a~~~L~~~-------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~------~i~~---- 121 (315)
...++++.+.++ .....+.|.+|+++|.+.++..+.......+ ++.+
T Consensus 216 ~~~~~~~~g~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~ 295 (433)
T 4gqo_A 216 KGNAFVEDGKLVADDKAGTELLTFMSELQKNKLLLASKATDPFETGTSIMADNGPWTFPNWDEKFPELKYNENYAITAPL 295 (433)
T ss_dssp TSCCSEETTEECCCHHHHHHHHHHHHHHHHTTCEECSCCSSHHHHTSEEEEEECTTHHHHHHHHCTTCCBTTTBEEECCC
T ss_pred cccccccCCceeecCHHHHHHHHHHHHHHHhcCCChhhHHHHHhCCceeEEEcchHHHHHHHHhchhhhcccccceeeec
Confidence 234566666554 2234567999999999987766655554332 3333
Q ss_pred EeC--CC-----ceeeeeeEEE--eCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHH-HHHHhhhCCCC
Q 036082 122 VPK--SG-----ASLWADLWAI--PAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARA-LPFKQEVIPGA 182 (315)
Q Consensus 122 ~Pk--eG-----~~~~~d~~~I--~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q-~~~~~e~~~~~ 182 (315)
+|. .+ ...+..+++| +++++|++ +|.+||+||+++|.+ ..+.+ ..++.
T Consensus 296 ~p~~~~~~~~~~~~~~~~~~~i~~~~~sk~~e------------aA~~fl~~l~s~e~~~~~~~~-~~g~~ 353 (433)
T 4gqo_A 296 VPDSMVNEENVATYADSKGVVMYAQATDKEKE------------AAMDFLKFVYNDDKNDLKFLE-TTNLI 353 (433)
T ss_dssp BCGGGTTCSSCCEEEEEEEEEEBTTSCHHHHH------------HHHHHHHHHTTSHHHHHHHHH-HHCCC
T ss_pred CCccccCccccceeccccceEEeecCCchhHH------------HHHHHHHHHcCCHHHHHHHHH-HcCCC
Confidence 332 11 1222334444 66777887 999999999998865 45664 44543
No 74
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=99.37 E-value=2.5e-12 Score=125.03 Aligned_cols=149 Identities=18% Similarity=0.253 Sum_probs=99.8
Q ss_pred CCCCeEeeeee---eceEEEEEecccccccCCCCCCChHhhcCc--ccC-------C---ceEeecCh-HHHh------h
Q 036082 15 PRGKICAAPYR---WGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA-------G---RISMVNSP-REVI------G 72 (315)
Q Consensus 15 pdG~~Y~vP~~---~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~-------G---ki~~~d~~-~~~~------g 72 (315)
.||++||||+. +.+.+++||+|.++++|+++|+||++|.+- +++ | .+.+.... ...+ +
T Consensus 120 ~dGkiY~lP~~~~~~~~~~~~ynkd~l~k~Gl~~P~T~de~~~~~~~~k~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 199 (490)
T 3a09_A 120 PDGNIYYLPYVPDGLVSRGYFIRQDWLDKLHLKTPQTVDELYTVLKAFKEKDPNGNGKADEIPFINRDPEEVFRLVNFWG 199 (490)
T ss_dssp TTSCBCCEEEECCCSCCEEEEEEHHHHHHTTCCCCCBHHHHHHHHHHHHHSCTTCSSSCCCEEECCSCTHHHHHGGGGGT
T ss_pred cCCeEEEEEeecCCCcceEEEEEHHHHHHcCCCCCCchhHHHHHHHHHHHhcccccCCcceeeeeccCCcchhhhhhhhh
Confidence 34999999985 346789999999999999999999999753 121 2 23322111 0000 0
Q ss_pred ----------------------H--HHHHHHHHHHHhh--------------cHHHHHHHHcCCEEEEEEehhhHHHHHH
Q 036082 73 ----------------------S--IAVQLNLALLANQ--------------SAHHLKAFGIGDVWVAVGWSSDVLPAVK 114 (315)
Q Consensus 73 ----------------------~--a~~~~a~~~L~~~--------------~~~~~~~~~~Gev~~~~~ws~~~~~~~~ 114 (315)
+ -.+.++++.+.++ ..+..+.|.+|++.|.+.|.........
T Consensus 200 ~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~al~~~~~l~~~G~i~~~~~t~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~ 279 (490)
T 3a09_A 200 ARSTGSNTWMDFYVENGKIKHPFAEVAFKDGIKHVAQWYKEGLIDPEIFTRKARSREQTFGNNIGGMTHDWFASTALFND 279 (490)
T ss_dssp CCSCSSSSTTCCEEETTEEECGGGSHHHHHHHHHHHHHHHTTSBCTTTTTCGGGHHHHHHHTTCEEEEEEEHHHHHHHHH
T ss_pred hhhccccccchhhhccCceeeccCCHHHHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHCCCEEEEEechHHHHHHHH
Confidence 0 0245666665543 2456788999999999888776655432
Q ss_pred ----cCCCeEE--E--eC--CCc--------eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHH
Q 036082 115 ----HMSNVAV--V--PK--SGA--------SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFK 175 (315)
Q Consensus 115 ----~~~~i~~--~--Pk--eG~--------~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (315)
..+...+ + |. .|. .....+++|+++++|++ +|.+||+||++||+|..+.
T Consensus 280 ~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~I~~~sk~~e------------~A~~fl~~l~s~e~~~l~~ 346 (490)
T 3a09_A 280 ALSKNIPGFKLVPMAPPINSKGQRWEEDARQIPRPDGWAITATNKNPV------------ETIKLFDFYFGPKGRELSN 346 (490)
T ss_dssp HTTTTSTTCCEEEECCCBCTTSCCCBCCCCCSSCSCEEEEBTTCSCHH------------HHHHHHHHTTSHHHHHHHH
T ss_pred HHhhcCCCceEEeeccCcCCCCcccCCCccccccceEEEEECCCCCHH------------HHHHHHHHhCCHHHHHHHh
Confidence 2233333 2 32 121 12235799999999999 9999999999999987664
No 75
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=99.37 E-value=9.2e-13 Score=131.01 Aligned_cols=148 Identities=15% Similarity=0.100 Sum_probs=99.4
Q ss_pred CCCCeEeeeee------eceEEEEEecccccccCCCCCCChHhhcCc--ccC-------C---ceEeecC----------
Q 036082 15 PRGKICAAPYR------WGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA-------G---RISMVNS---------- 66 (315)
Q Consensus 15 pdG~~Y~vP~~------~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~-------G---ki~~~d~---------- 66 (315)
.||++|++|+. ..+.+++||++.|+++|+++|+||+||.+. +++ | .+.+.-.
T Consensus 145 ~dG~~Y~lP~~~~~~~~~~~~~l~ynkdll~~~Gl~~P~Twdel~~~~~~~k~~~p~g~G~~~~~p~~~~~~~~~~~~~~ 224 (535)
T 3omb_A 145 SKGRIYAIADGRGKAYSGTGQHMLINKAWLDKLGLQVPTTWDELENVLKAFKTQDPNGNGQADEIPMNIKKLEGSYFTWY 224 (535)
T ss_dssp TTSCCSSEEEECCGGGCSCSCEEEEEHHHHHHHTCCCCCBHHHHHHHHHHHHHSCTTCSSSSCCEEECCCCCCSSSCCTT
T ss_pred CCCCEEEeecccCcCccccccceEeeHHHHHHcCCCCCCCHHHHHHHHHHHHhhCCCCCCCCCeeeeEeccCCCcccchh
Confidence 45999999999 556899999999999999999999999864 222 2 2332110
Q ss_pred ----hHHHhhH--------------------------HHHHHHHHHHHhh--------------cHHHHHH-HHcC---C
Q 036082 67 ----PREVIGS--------------------------IAVQLNLALLANQ--------------SAHHLKA-FGIG---D 98 (315)
Q Consensus 67 ----~~~~~g~--------------------------a~~~~a~~~L~~~--------------~~~~~~~-~~~G---e 98 (315)
....+|+ ..+.++++.+.++ ..+.... +..| +
T Consensus 225 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~l~~~G~~~~~~~t~~~~~~~~~~~~~G~~a~ 304 (535)
T 3omb_A 225 SPMLLLNSTGIVTGFNKGVSEYGFYAKNGVVKSFLTSDEYKEVIKYYHKLISEGLIPAEWATKDDDAYNADQISDGKTAK 304 (535)
T ss_dssp CGGGGGGGGTCCCCTTSSGGGGTEEEETTEEEEGGGSHHHHHHHHHHHHHHHTTSSCTTGGGCCHHHHHHHHHTTSSSCC
T ss_pred hHHHHHHhhCCCcccccCCCCceEEecCCEEEecCCCHHHHHHHHHHHHHHHCCCCChhhhcCCHHHHHHHHhcCCCcce
Confidence 0011110 1345666666544 1223333 4677 8
Q ss_pred EEEEEEehhhHHHHHHcCCCeEE--EeCC--Cc-----------eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH
Q 036082 99 VWVAVGWSSDVLPAVKHMSNVAV--VPKS--GA-----------SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE 163 (315)
Q Consensus 99 v~~~~~ws~~~~~~~~~~~~i~~--~Pke--G~-----------~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn 163 (315)
+.|.+.|+...... ..+.++.+ +|.. |. .....+++|+++++|++ +|.+||+
T Consensus 305 ~a~~~~w~~~~~~~-~~~~~~~~~p~p~~~~g~~~~~~~~~~~~~~~~~~~~I~~~sk~~e------------~A~~fl~ 371 (535)
T 3omb_A 305 TGVVFGWSPSDNFG-KLKDQYIAMPVPSAPGVSPDQTVWDGSSSELSPAGLSISSHAANKD------------AALKLAN 371 (535)
T ss_dssp EEEEEESCHHHHHG-GGGGGEEECCCCBCTTCCGGGCCCCCCCSSEEEEEEEEBTTCTTHH------------HHHHHHH
T ss_pred EEEEeecccccccC-CCcccEEEecCccCCCCCcccceeccccccccCCeEEEECCCCCHH------------HHHHHHH
Confidence 88888887544322 22445665 5643 22 23457899999999998 9999999
Q ss_pred HHhcHHHHHHHH
Q 036082 164 FCLQTARALPFK 175 (315)
Q Consensus 164 fllspe~q~~~~ 175 (315)
|++|||.|..+.
T Consensus 372 ~l~s~e~q~~~~ 383 (535)
T 3omb_A 372 LLYSEKYSVQQF 383 (535)
T ss_dssp HHTSHHHHHHHH
T ss_pred HhcCHHHHHHHh
Confidence 999999998764
No 76
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=99.33 E-value=2e-11 Score=112.77 Aligned_cols=137 Identities=15% Similarity=0.191 Sum_probs=98.4
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhc-CcccCCceEeecChHHHhhHH---HHH---------HHHHHHH-h
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLW-RPELAGRISMVNSPREVIGSI---AVQ---------LNLALLA-N 85 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~-dp~~~Gki~~~d~~~~~~g~a---~~~---------~a~~~L~-~ 85 (315)
+.+||.++..+|+||++.....++ +|++|.||+ +| +++|++.+...+..|.. .+. ..++.+. +
T Consensus 78 ~~~~~~~~~l~i~~~~~~~~~~~~-~~~~w~dll~~~--~~~I~~~~p~~~~~G~~~~~~l~~~~~~~~~~~~~~~l~~~ 154 (296)
T 3cfx_A 78 WYAAFARNQMILAYTNESKYGDEI-NTDNWYEILRRP--DVRYGFSNPNDDPAGYRSQMVTQLAESYYNDDMIYDDLMLA 154 (296)
T ss_dssp CEEEEEECCEEEEECTTSTTTTTC-CTTTHHHHHHST--TCCEEEECTTTCHHHHHHHHHHHHHHHHTTCTTHHHHHTGG
T ss_pred ceeeeEeeeEEEEEeCCCccccCC-CcccHHHHhCCC--CeEEEEeCCCCCCCcHHHHHHHHHHHHhhcCccHHHHHhhc
Confidence 568999999999999997533222 579999955 66 47999988654444422 111 1223332 1
Q ss_pred -------------------------------h----cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCCCc-
Q 036082 86 -------------------------------Q----SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKSGA- 127 (315)
Q Consensus 86 -------------------------------~----~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~PkeG~- 127 (315)
. ..+..+.+.+|++++++.|.+.+... .+.+ +|+++.
T Consensus 155 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~d~~i~~~s~a~~~-----~~~~~~~P~~~~~ 229 (296)
T 3cfx_A 155 NTGMTLTTEENGTALIHVPASEEISPNTSKIMLRSMEVELSSALETGEIDYLYIYRSVAEQH-----GFEYVALPPAIDL 229 (296)
T ss_dssp GSSCEEEECTTSCEEEECCCGGGCCCCTTTEEEESSGGGGHHHHHTTSCSEEEEEHHHHHHH-----TCEEECCCTTTSS
T ss_pred ccccccccccCCcccccccccccccccccceeecccHHHHHHHHHcCCCCEEEeehhhHhhC-----CCCEEECChhhcc
Confidence 1 23567889999999999998877653 2343 787752
Q ss_pred ------------------------eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 128 ------------------------SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 128 ------------------------~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
..+...++|+|+++|++ +|++||+||+|+|+|..+.+
T Consensus 230 ~~~~~~~~y~~v~~~~~~g~~~~~~~i~~~~~i~k~a~~~~------------~A~~Fi~fllS~e~q~i~~~ 290 (296)
T 3cfx_A 230 SSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNAENSE------------LATEFVALLLGETGQQIFIE 290 (296)
T ss_dssp CCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCSCHH------------HHHHHHHHHHSHHHHHHHHH
T ss_pred cCccccccccceeeeccCCccccCCceEEEEEeecCCCCHH------------HHHHHHHHHhChHHHHHHHH
Confidence 12357899999999998 99999999999999998873
No 77
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=99.32 E-value=2.3e-11 Score=112.21 Aligned_cols=137 Identities=13% Similarity=0.192 Sum_probs=99.0
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhc-CcccCCceEeecChHHHhhHH---HHH---------HHHHHHH-h
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLW-RPELAGRISMVNSPREVIGSI---AVQ---------LNLALLA-N 85 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~-dp~~~Gki~~~d~~~~~~g~a---~~~---------~a~~~L~-~ 85 (315)
+.+||.++..+|+||++.....++ +|++|.||+ +| ++||++.|......|.. .+. ..++.+. +
T Consensus 78 ~~~~~~~~~lvl~~~~~~~~~~~i-~~~~w~dll~~~--~~~I~~~~p~~~~~G~~~~~~l~~~~~~~~~~~~~~~l~~~ 154 (295)
T 3cij_A 78 WTIMFAKNQIVLAYRNDSRYADEI-NSQNWYEILKRP--DVRFGFSNPNDDPCGYRSLMAIQLAELYYNDPTIFDELVAK 154 (295)
T ss_dssp CCEEEEECCEEEEECTTSTTTTTC-CTTTHHHHHTST--TCCEEEECTTTCHHHHHHHHHHHHHHHHTTCTTHHHHHTGG
T ss_pred eeeEEEeeeEEEEEeCCCcccccc-CcccHHHHhcCC--CcEEEEeCCCcCCccHHHHHHHHHHHHhccCCcHHHHHhhc
Confidence 468999999999999997543222 579999955 66 58999998654434422 111 1233443 1
Q ss_pred ------------------------------h----cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCCCc--
Q 036082 86 ------------------------------Q----SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKSGA-- 127 (315)
Q Consensus 86 ------------------------------~----~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~PkeG~-- 127 (315)
. ..+..+.+.+|++++++.|.+++... .+.+ +|+++.
T Consensus 155 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~d~~i~~~s~a~~~-----~~~~~~~P~~~~~~ 229 (295)
T 3cij_A 155 NSNLRFSEDNGSYVLRMPSSERIEINKSKIMIRSMEMELIHLVESGELDYFFIYKSVAKQH-----GFNFVELPVEIDLS 229 (295)
T ss_dssp GBSCCEEEETTEEEEECCCGGGCCBCTTTEEEESSTHHHHHHHHTTSCSEEEEEHHHHHHT-----TCEEEECCTTTSSC
T ss_pred cccccccccCCcccccccccccccccccceeecccHHHHHHHHhCCCCCEEEEEeehhhhC-----CCCEEECchhhccC
Confidence 1 24678899999999999998877642 2444 888763
Q ss_pred -----------------------eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 128 -----------------------SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 128 -----------------------~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
......++|+|+++|++ +|++||+||+|+|+|..+.+
T Consensus 230 ~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~i~k~a~~~~------------~A~~Fi~fl~S~e~q~i~~~ 289 (295)
T 3cij_A 230 SPDYAELYSKVKVVLANGKEVTGKPIVYGITIPKNAENRE------------LAVEFVKLVISEEGQEILRE 289 (295)
T ss_dssp CGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCSCHH------------HHHHHHHHHHSHHHHHHHHH
T ss_pred CccccccccceEEeccCCccccCCceEEEEEeecCCCCHH------------HHHHHHHHHhChhHHHHHHH
Confidence 12357899999999998 99999999999999998873
No 78
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=99.23 E-value=1e-10 Score=104.87 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=99.8
Q ss_pred eeeeeeceEEEEEeccc-ccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHH---HHH--HHHHHHhh------cH
Q 036082 21 AAPYRWGTVVIAYKKSK-FRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIA---VQL--NLALLANQ------SA 88 (315)
Q Consensus 21 ~vP~~~g~~gi~YN~d~-~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~---~~~--a~~~L~~~------~~ 88 (315)
..||..+..+|+||++. .+..++..+++|.+|+++ ++|++.|+.....|... ++. .++.+... ..
T Consensus 81 ~~~~~~~~lvl~~~~~~~~~~~~i~~~~~l~~l~~~---~~iai~~p~~~p~G~~a~~~l~~~g~~~~l~~~~~~~~~~~ 157 (237)
T 3r26_A 81 RQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNG---GRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVR 157 (237)
T ss_dssp CEEEEEECEEEEEESSCCCCCCCCSTTCCHHHHHTT---CCEEEECTTTCHHHHHHHHHHHHTTCHHHHGGGEEEESSHH
T ss_pred eeeeEcceEEEEEeCCCCcccccccchHhHHHhcCC---CeEEEeCCCCCChHHHHHHHHHHcCCHHHhhhcEEecCCHH
Confidence 36888889999999985 333334457899998863 79999886544444431 111 12233322 34
Q ss_pred HHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhc
Q 036082 89 HHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQ 167 (315)
Q Consensus 89 ~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInflls 167 (315)
+..+.+.+|++++++.|.+++.. ..+.++.+ +|+++.......++|+|+++| + +|++||+||+|
T Consensus 158 ~~~~~v~~Ge~d~gi~~~s~a~~--~~~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~------------~A~~Fi~fl~S 222 (237)
T 3r26_A 158 GALALVERNEAPLGIVYGSDAVA--SKGVKVVATFPEDSHKKVEYPVAVVEGHNN-A------------TVKAFYDYLKG 222 (237)
T ss_dssp HHHHHHHTTSSSEEEEEHHHHHH--CSSEEEEEECCGGGSCCEEEEEEEBTTCCS-H------------HHHHHHHHHTS
T ss_pred HHHHHHHcCCCCEEEEEeccccc--CCCCeEEEECCcccCCeeeeeEEEEcCCCC-H------------HHHHHHHHHcC
Confidence 67788999999999999987654 22223334 899888777889999999999 6 79999999999
Q ss_pred HHHHHHHHh
Q 036082 168 TARALPFKQ 176 (315)
Q Consensus 168 pe~q~~~~~ 176 (315)
++.|..+.+
T Consensus 223 ~eaq~i~~~ 231 (237)
T 3r26_A 223 PQAAEIFKR 231 (237)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
No 79
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=99.19 E-value=1.3e-10 Score=114.86 Aligned_cols=149 Identities=17% Similarity=0.223 Sum_probs=93.1
Q ss_pred CCCCeEeeee---eeceEEEEEecccccccCCCCCCChHhhcCc--cc-------CC---ceEeecChH-------HHhh
Q 036082 15 PRGKICAAPY---RWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--EL-------AG---RISMVNSPR-------EVIG 72 (315)
Q Consensus 15 pdG~~Y~vP~---~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~-------~G---ki~~~d~~~-------~~~g 72 (315)
.||++|+||+ ...+.+++||++.++++|+++|+||++|.+- ++ .| .+.+..... ..++
T Consensus 120 ~dGk~Y~lP~~~~~~~~~~~~ynkd~l~~~Gl~~P~T~del~~~~~~~k~~~p~g~G~~~~~~~~~~~~~~~~~~~~~~g 199 (502)
T 3vlv_A 120 PDGNIYYLPYVPDGLVSRGYFIRQDWLDKLHLKTPQTVDELYTVLKAFKEKDPNGNGKADEIPFINRDPEEVFRLVNFWG 199 (502)
T ss_dssp TTSCBCCEEEECCCSCCEEEEEEHHHHHHTTCCCCCBHHHHHHHHHHHHHSCTTCSSSCCCEEECCSCTTHHHHGGGGGT
T ss_pred CCCCEEEeccccCCCcCcceEEeHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCCCCcceeeeeccCCchHHHHHHHhC
Confidence 4499999999 4578899999999999999999999999852 22 12 243322100 0111
Q ss_pred H------------------------HHHHHHHHHHHhh-------------cHHHHHHHHcCCEE-EEEEehhhHHHH--
Q 036082 73 S------------------------IAVQLNLALLANQ-------------SAHHLKAFGIGDVW-VAVGWSSDVLPA-- 112 (315)
Q Consensus 73 ~------------------------a~~~~a~~~L~~~-------------~~~~~~~~~~Gev~-~~~~ws~~~~~~-- 112 (315)
. ..+.++++.+.++ ..+..+.+.+|.+. +...|.......
T Consensus 200 ~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~l~~~G~i~~~~~t~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~ 279 (502)
T 3vlv_A 200 ARSTGSNTWMDFYVENGKIKHPFAEVAFKDGIKHVAQWYKEGLIDPEIFTRKARSREQTFGNNIGGMTHDWFASTALFND 279 (502)
T ss_dssp CCSCSSSSTTCCEEETTEEECGGGSHHHHHHHHHHHHHHHTTCBCTTTTTCGGGHHHHHHHTTCEEEEEEEHHHHHTHHH
T ss_pred CCCcCCCCcceEEecCCEEEeCCCCHHHHHHHHHHHHHHHCCCCChhhhcCChHHHHHHHcCCeEEEEeecccccchhhh
Confidence 0 0345666666554 11234555555544 444564432111
Q ss_pred --HHcCCCeE--EE--eC--CCc--------eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHH
Q 036082 113 --VKHMSNVA--VV--PK--SGA--------SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFK 175 (315)
Q Consensus 113 --~~~~~~i~--~~--Pk--eG~--------~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (315)
....++.. .+ |. .|. .....+|+|+++++|++ +|.+||+||++||+|..+.
T Consensus 280 ~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~I~~~sk~~e------------~A~~fl~~l~s~e~~~l~~ 346 (502)
T 3vlv_A 280 ALSKNIPGFKLVPMAPPINSKGQRWEEDARQIPRPDGWAITATNKNPV------------ETIKLFDFYFGPKGRELSN 346 (502)
T ss_dssp HTTTTSTTCCEEEECCCBCTTSCCCBCCCCCSSCSCEEEEBTTCSCHH------------HHHHHHHHTTSHHHHHHHH
T ss_pred hhhhcCCCcceEEecCccCCCCccccccccCCCCCceEEEeCCCCCHH------------HHHHHHHHhcCHHHHHHHh
Confidence 12233333 32 32 232 23346899999999998 9999999999999987654
No 80
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=99.06 E-value=1.3e-09 Score=100.26 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=94.8
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhc-CcccCCceEeecChHHHhhHH---HHH---------HHHHHHHh-
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLW-RPELAGRISMVNSPREVIGSI---AVQ---------LNLALLAN- 85 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~-dp~~~Gki~~~d~~~~~~g~a---~~~---------~a~~~L~~- 85 (315)
+.+||.++..+|+||++.....++ +|++|.||+ +| ++||++.|...+..|.. .+. ..++.+..
T Consensus 78 ~~~~~~~~~lvi~~~~~~~~~~~i-~~~~w~dll~~p--~~~I~~~dp~~~~~G~~~~~~l~~~~~~~~~~~~~~~l~~~ 154 (292)
T 3cfz_A 78 WYVMFARNEIVLAYTDKSKYKDEI-NSTNWYKILQRP--DVKIGFSNPNDDPCGYRTQMVLQLAELYYKDPTIYDNLVLK 154 (292)
T ss_dssp CCEEEEECCEEEEECTTSTTTTTC-CTTTHHHHTTST--TCCEEEECTTTCHHHHHHHHHHHHHHHHHTCTTHHHHHTGG
T ss_pred ceeeeEeccEEEEEcCCCccccCC-CcccHHHHhcCC--CcEEEeCCCCCCCCcHHHHHHHHHHHHhccCCcHHHHHhcc
Confidence 457999999999999987543222 578999965 66 57999988654444422 111 12334431
Q ss_pred ----------------------------h----cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCCCc----
Q 036082 86 ----------------------------Q----SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKSGA---- 127 (315)
Q Consensus 86 ----------------------------~----~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~PkeG~---- 127 (315)
. ..+..+.+.+|++++++.|.+++.. . .+.+ +|+++.
T Consensus 155 ~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~---~--~~~~~~~P~~~~~~~~ 229 (292)
T 3cfz_A 155 HSNIKVEENNGTYLILVPKELDVDTNKLFVRSKETDLLAPLEAGAFDYLFIYKSVANQ---H--HLKYIELPKEINLGYY 229 (292)
T ss_dssp GBSCEEEEETTEEEEEECSSCCBCTTTEEEESSGGGGHHHHHTTSSSEEEEEHHHHHH---T--TCEEECCCTTTSSCCG
T ss_pred cccccccccCCcccccccccccccccceeecccHHHHHHHHHCCCCCEEEEEehhhhh---C--CCCEEECChhhcccCc
Confidence 1 2356788999999999999888754 1 2333 666541
Q ss_pred ----------------------eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 128 ----------------------SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 128 ----------------------~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
..+..+++|+|+++|++ +|++||+||+ +.|..+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~k~a~~~~------------~A~~Fi~fl~--e~q~i~~~ 286 (292)
T 3cfz_A 230 EYADTYKKVALKIIAKNKTINAKPIVYGMTVPTNAPHKK------------EAIEFVKFVL--GHPEVLEN 286 (292)
T ss_dssp GGHHHHTTEEEEEGGGTEEEECCCCEEEEECCTTCTTHH------------HHHHHHHHHH--HCTHHHHT
T ss_pred cccchhhceeeeeccccccccCCceeEEEEeecCCCCHH------------HHHHHHHHHH--HHHHHHHH
Confidence 12468899999999998 9999999999 88888763
No 81
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=99.02 E-value=1.4e-09 Score=93.87 Aligned_cols=142 Identities=12% Similarity=0.025 Sum_probs=97.9
Q ss_pred eeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHH------H--HHhh------
Q 036082 21 AAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLA------L--LANQ------ 86 (315)
Q Consensus 21 ~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~------~--L~~~------ 86 (315)
.+|+.++..+++||++.. .+.||+||.++.+ |++.+.+......+.. ....+. . +...
T Consensus 74 ~~~~~~~~~vlv~~~~~~------~~~~~~dL~~~~~-~~i~~~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~~~~~~~~ 145 (231)
T 1atg_A 74 RFTYAIGKLVLWSAKPGL------VDNQGKVLAGNGW-RHIAISNPQIAPYGLA-GTQVLTHLGLLDKLTAQERIVEANS 145 (231)
T ss_dssp CEEEEECCEEEEESSTTT------SCTTSGGGGSSSC-SCEEEECTTTCHHHHH-HHHHHHHTTCHHHHHHTTCEEEESS
T ss_pred eeEeeeeeEEEEEcCCCC------CCcchhhhccCCC-CEEEecCCCCCchhHH-HHHHHHHCCCcccccccceEEecCC
Confidence 578999999999999853 3458999999875 7888876432222221 111111 1 2111
Q ss_pred cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHH
Q 036082 87 SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFC 165 (315)
Q Consensus 87 ~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfl 165 (315)
.....+++.+|++.+++.|.+.+.........+.+ +|.+|...+...++|++++++++ +|++||+|+
T Consensus 146 ~~~~~~~v~~G~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~------------~a~~fi~~l 213 (231)
T 1atg_A 146 VGQAHSQTASGAADLGFVALAQIIQAAAKIPGSHWFPPANYYEPIVQQAVITKSTAEKA------------NAEQFMSWM 213 (231)
T ss_dssp HHHHHHHHHTTSSSEEEEEGGGTCCTTSCCSSEEECCCGGGSCCCEEEEEEBTTCSCHH------------HHHHHHHHT
T ss_pred HHHHHHHHHcCCCCEEEEEHHHhhhccccccCeEEEeCcccCccceEeEEEecCCCChH------------HHHHHHHHH
Confidence 23567889999999999998765321111224566 88887655566889999999987 999999999
Q ss_pred hcHHHHHHHHhhhCCCCCC
Q 036082 166 LQTARALPFKQEVIPGASP 184 (315)
Q Consensus 166 lspe~q~~~~~e~~~~~~P 184 (315)
+++++|..+.+ .||.+|
T Consensus 214 ~s~~~q~~~~~--~g~~~~ 230 (231)
T 1atg_A 214 KGPKAVAIIKA--AGYVLP 230 (231)
T ss_dssp TSHHHHHHHHH--TTCBCC
T ss_pred cCHHHHHHHHH--hCCCCC
Confidence 99999998873 366544
No 82
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=99.01 E-value=1.2e-09 Score=96.39 Aligned_cols=132 Identities=15% Similarity=0.133 Sum_probs=86.7
Q ss_pred eeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChH--HH--hhHH---HH--H--HHHHHHHhh---
Q 036082 21 AAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPR--EV--IGSI---AV--Q--LNLALLANQ--- 86 (315)
Q Consensus 21 ~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~--~~--~g~a---~~--~--~a~~~L~~~--- 86 (315)
..++..+..+|+||++. . ..|+||+||++|++ +|++.|... +. .+.. .+ . ..++.++..
T Consensus 75 ~~~~~~~~~~l~~~~~~-~----~~~~sw~dL~~~~~--~i~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~ 147 (237)
T 2hxw_A 75 IKPLYFREAIILTQKGN-P----LKIKGLKDLANKKV--RIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNFRNNIVA 147 (237)
T ss_dssp CEEEEEEEEEEEESTTC-T----TCCCSHHHHHHSCC--CEEECCCTTSSCCTTTTHHHHHHHTTCCHHHHHHHHHTEEE
T ss_pred ccccccCceEEEEeCCC-C----CCCCCHHHhcCCCc--EEEecCCCCCCcccchHHHHHHHHHccCHHHHHHHhhceEE
Confidence 35778889999999984 2 25799999999876 688876521 11 1211 11 0 112223322
Q ss_pred ----cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEEEeCCCce-eee-eeEEEeCCCCCcccccCCCCCCCHHHHHH
Q 036082 87 ----SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGAS-LWA-DLWAIPAASRLETKQIGGRVRGLSPLIHQ 160 (315)
Q Consensus 87 ----~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~~PkeG~~-~~~-d~~~I~k~s~~~~~~~~~~~~~~~~~A~~ 160 (315)
..+..+.+.+|++++++.|.+++.. ..+.+.++|.+|.. .+. ..++|++++ ++ +|++
T Consensus 148 ~~~~~~~~~~~~~~g~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~------------~A~~ 210 (237)
T 2hxw_A 148 FVPNSGSARKLFAQDQADAWITWIDWSKS---NPDIGTAVAIEKDLVVYRTFNVIAKEGA--SK------------ETQD 210 (237)
T ss_dssp ECCCCTTC--CTTTTTCSEEEEEHHHHHH---STTSSEEEECCTTTCCEEEEEEEECTTC--CH------------HHHH
T ss_pred EcCCHHHHHHHHHcCCeeEEEEechhhhc---CCCceEEEecCCceeEEeeeeEEEccCC--hH------------HHHH
Confidence 2234556889999999999887543 22233347766643 333 378999988 66 8999
Q ss_pred HHHHHhcHHHHHHHHh
Q 036082 161 WIEFCLQTARALPFKQ 176 (315)
Q Consensus 161 FInfllspe~q~~~~~ 176 (315)
||||++|||+|+.+.+
T Consensus 211 Fi~fl~s~e~q~~~~~ 226 (237)
T 2hxw_A 211 FIAYLSSKEAKEIFKK 226 (237)
T ss_dssp HHHHTTSHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHH
Confidence 9999999999999984
No 83
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=98.97 E-value=4.7e-09 Score=95.61 Aligned_cols=134 Identities=15% Similarity=0.120 Sum_probs=94.4
Q ss_pred eeeeeeceEEEEEecccccc-cCCCCCCC--hHhhcCcccCCceEeecChHHHhhHHH---HHH--HHHHHHhh------
Q 036082 21 AAPYRWGTVVIAYKKSKFRK-HNLAPIED--WKDLWRPELAGRISMVNSPREVIGSIA---VQL--NLALLANQ------ 86 (315)
Q Consensus 21 ~vP~~~g~~gi~YN~d~~~~-~Gl~~P~S--W~dL~dp~~~Gki~~~d~~~~~~g~a~---~~~--a~~~L~~~------ 86 (315)
..++..+..+|+||++.... . .+++ |.++.++ .++|++.|+.....|... ++. .++.|...
T Consensus 97 ~~~~a~~~lvl~~~~~~~~~~~---~i~~~dl~~l~~~--~~~iai~dP~~~p~G~~a~~~l~~~g~~~~l~~~~v~~~~ 171 (253)
T 3gzg_A 97 RHNLLGNTLVLVAPASSKLRVD---PRAPGAIAKALGE--NGRLAVGQTASVPAGSYAAAALRKLGQWDSVSNRLAESES 171 (253)
T ss_dssp EEEEEEECEEEEEETTCCCCCC---TTSTTHHHHHTTT--TCCEEEECTTTSHHHHHHHHHHHHTTCHHHHTTSEEEESS
T ss_pred ceeEEeeEEEEEEECCCCcccC---CCCHHHHHHhhcC--CCEEEEeCCCCCchHHHHHHHHHHcCcHHHHhhceeecCC
Confidence 35777889999999986422 1 3555 6665433 479999886443444431 111 12223322
Q ss_pred cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE---EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH
Q 036082 87 SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV---VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE 163 (315)
Q Consensus 87 ~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~---~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn 163 (315)
..+..+.+.+|++++++.|.+++.. .+++.+ +|+++.......++|.+++ +++ +|++||+
T Consensus 172 ~~~~~~~v~~Gead~giv~~s~a~~----~~~v~~v~~~P~~~~~~i~~~~ai~k~~-~~~------------~A~~Fi~ 234 (253)
T 3gzg_A 172 VRAALMLVSRGEAPLGIVYGSDARA----DAKVRVVATFPDDSHDAIVYPVAALKNS-NNP------------ATAAFVS 234 (253)
T ss_dssp HHHHHHHHHTTSSSEEEEEHHHHHH----CTTEEEEEECCGGGSCCEEEEEEECTTC-CCT------------THHHHHH
T ss_pred HHHHHHHHHcCCCCEEEEEhhcccc----CCCceEEEECCcccCceeEEEEEEECCC-ChH------------HHHHHHH
Confidence 2466788899999999999887752 244553 7998887777899999998 777 8999999
Q ss_pred HHhcHHHHHHHHh
Q 036082 164 FCLQTARALPFKQ 176 (315)
Q Consensus 164 fllspe~q~~~~~ 176 (315)
||+|++.|..+.+
T Consensus 235 fl~S~eaq~i~~~ 247 (253)
T 3gzg_A 235 WLGSKPAKAIFAR 247 (253)
T ss_dssp HTTSHHHHHHHHH
T ss_pred HHcCHHHHHHHHH
Confidence 9999999999974
No 84
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=98.36 E-value=4.8e-06 Score=79.59 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=93.0
Q ss_pred eeeeeeceEEEEEecccccccCCCCCCCh-HhhcCcccCCceEeecChHHHhhHH---HHHHH---------HHHHH---
Q 036082 21 AAPYRWGTVVIAYKKSKFRKHNLAPIEDW-KDLWRPELAGRISMVNSPREVIGSI---AVQLN---------LALLA--- 84 (315)
Q Consensus 21 ~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW-~dL~dp~~~Gki~~~d~~~~~~g~a---~~~~a---------~~~L~--- 84 (315)
-.++..+..+|+++++.-...++ .+.+| ++|.++.. ||++.+....-.|.. .++.+ ++.+.
T Consensus 117 ~~~~a~n~lVliv~~~~p~~~~I-~~~~~~~~L~~~~~--riai~~P~~~P~G~~a~~~l~~a~~~~~~~gl~~~l~~~~ 193 (354)
T 3k6v_A 117 YAAFARNQMILAYTNESKYGDEI-NTDNWYEILRRPDV--RYGFSNPNDDPAGYRSQMVTQLAESYYNDDMIYDDLMLAN 193 (354)
T ss_dssp EEEEEECCEEEEECTTSTTTTTC-CTTTHHHHHHSTTC--CEEEECTTTCHHHHHHHHHHHHHHHHHTCTTHHHHHTGGG
T ss_pred ceEeECCeEEEEEECCCcccccc-CcccHHHHhcCCCC--EEEEcCCCCCChHHHHHHHHHHHHhhcccccHHHHHhhhc
Confidence 46778888999998864211112 22467 57777664 899988654444443 11211 23331
Q ss_pred ---------------------------hh------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCCCce-
Q 036082 85 ---------------------------NQ------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKSGAS- 128 (315)
Q Consensus 85 ---------------------------~~------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~PkeG~~- 128 (315)
.. ..+....+.+|++++++.|.+++... .+.| +|.+-..
T Consensus 194 ~~v~l~~~~~g~~~~~~p~~~~~~~~~~k~v~~~~v~~~l~~v~~G~aDag~vy~S~a~~~-----~l~~v~lP~~~n~~ 268 (354)
T 3k6v_A 194 TGMTLTTEENGTALIHVPASEEISPNTSKIMLRSMEVELSSALETGEIDYLYIYRSVAEQH-----GFEYVALPPAIDLS 268 (354)
T ss_dssp SSCEEEECTTSCEEEECCCHHHHCCCTTTEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHH-----TCEEEECCTTTSSC
T ss_pred cccccccccCcccccccccccccccccceeEeCCCHHHHHHHHHcCCCCEEEEEhhhhhhc-----CCcEEeCChhhccc
Confidence 00 23677888999999999998887654 2565 6653110
Q ss_pred --------------------e----eeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCC
Q 036082 129 --------------------L----WADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGA 182 (315)
Q Consensus 129 --------------------~----~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~ 182 (315)
. -...++|+++++|++ +|++||+||+|++.|..+.+ .||.
T Consensus 269 ~~~~~~~y~~v~v~~~~~~~~~~~Pi~y~~ai~k~a~~~~------------~A~~Fi~fL~S~eaq~i~~~--~Gf~ 332 (354)
T 3k6v_A 269 SLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNAENSE------------LATEFVALLLGETGQQIFIE--NGQP 332 (354)
T ss_dssp CGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCTTHH------------HHHHHHHHHHSHHHHHHHHH--TTCC
T ss_pred cccccccccceeeeccccccccCCceeEeEEeecCCCCHH------------HHHHHHHHHcCHHHHHHHHH--CCCc
Confidence 0 145789999999998 99999999999999999874 4653
No 85
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=96.11 E-value=0.14 Score=46.03 Aligned_cols=141 Identities=11% Similarity=0.025 Sum_probs=77.2
Q ss_pred eEeeeeeeceEEEEEeccccccc-C--------CCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHH----HHHh
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKH-N--------LAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLA----LLAN 85 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~-G--------l~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~----~L~~ 85 (315)
.-.+|+..+..++++|++-.... . ...+++|.||--+..+-.+...++...+... +.+.+. .+..
T Consensus 104 ~~~~~ia~d~~~vivn~~n~~~~lt~~~l~~i~~g~i~~W~~l~~~~~~i~~~~r~~~sgt~~~--f~~~~~~~~~~~~~ 181 (279)
T 4gd5_A 104 LKEVEIAYDGIALITHKNNPVKDLTLVQIKDIYTGKITNWKELGGNDAPIVVVSREDGSGTRDA--FQEIVGFKAEELTV 181 (279)
T ss_dssp CEEEEEEEEEEEEEEETTCSCCEECHHHHHHHHTTSCCBGGGGTSCSSBCEEEEECTTCHHHHH--HHHHHTCCGGGSCT
T ss_pred ceEEEEEeeceeeeeccCCccccccHHHHHHHhcccccchhhcCCCccceeEEeCCCCchHHHH--HHHHHhccCcccCc
Confidence 44678888999999998653210 0 1256788888655433233333322211111 111110 0000
Q ss_pred h------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE------EeC-----CCc-eeeeeeEEEeCCCCCccccc
Q 036082 86 Q------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV------VPK-----SGA-SLWADLWAIPAASRLETKQI 147 (315)
Q Consensus 86 ~------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~------~Pk-----eG~-~~~~d~~~I~k~s~~~~~~~ 147 (315)
. +....+.+.+++..++...-+. ....++. .|. .|. ++.-..+.|.+++++.+
T Consensus 182 ~~~~~~~~~~~~~~V~~~~~aiGy~~~~~------~~~~~~~~~v~gv~pt~~~i~~g~YPl~rp~~~v~~~~~~~~--- 252 (279)
T 4gd5_A 182 NSQISDGSGNIKSLVQGNENAIGYISFSY------VDDSVSAVKVDGVEATPENVLNKSYKVSRPFLAVYKEENLTE--- 252 (279)
T ss_dssp TCEEESSHHHHHHHHHHCTTEEEEEEGGG------CCTTEEECEETTBCCCHHHHHTTCSCCEEEEEEEECTTTCCH---
T ss_pred cccccCCcccceeEEeecCccceecchhh------hhccccEeeecCccCCHHHhhcCCCCcEEEEEEEEcCCCCCH---
Confidence 0 2345667778887777643221 1122222 231 232 34334456778887776
Q ss_pred CCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCC
Q 036082 148 GGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPG 181 (315)
Q Consensus 148 ~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~ 181 (315)
+|++|++|++|+|+|..+.+ .||
T Consensus 253 ---------~ak~F~~f~~S~egQ~ii~~--~Gf 275 (279)
T 4gd5_A 253 ---------SGKSFIDFILSEEGQDIVAK--EHL 275 (279)
T ss_dssp ---------HHHHHHHHHHSHHHHHHHHH--TTC
T ss_pred ---------HHHHHHHHHcCHHHHHHHHH--ccC
Confidence 89999999999999998874 365
No 86
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=94.06 E-value=0.097 Score=46.90 Aligned_cols=61 Identities=5% Similarity=-0.057 Sum_probs=43.5
Q ss_pred hhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHH
Q 036082 106 SSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFK 175 (315)
Q Consensus 106 s~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (315)
.+.++..... .++.+ ++.++..+....+.+.+..+++. =+.+.|++|++||+||++|..+.
T Consensus 172 r~t~l~~~~~-~~l~i~~~gd~~l~n~y~v~~v~p~~~~~--------~~~~~a~~f~~wl~s~~gQ~~i~ 233 (237)
T 3muq_A 172 RGTWLAYQNK-LDLEILFQGDEKLFNPYQVILVNPERYPT--------INYQGAKAFSDWLVNPRGQELIN 233 (237)
T ss_dssp HHHHHHHGGG-CSCEEEECCCGGGEEEEEEEEECTTTCTT--------SCHHHHHHHHHHHHSHHHHHHHH
T ss_pred chHHhhcccc-CCeEEEEcCCCceeeeeEEEEECcccCCc--------cCHHHHHHHHHHHcCHHHHHHHH
Confidence 3444444433 46888 88777777777777777666542 02459999999999999999887
No 87
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=88.54 E-value=1.2 Score=39.76 Aligned_cols=61 Identities=3% Similarity=-0.089 Sum_probs=35.6
Q ss_pred hhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHH
Q 036082 107 SDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFK 175 (315)
Q Consensus 107 ~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (315)
+.++.......++.+ +-.+...+....+.+..-.+++. -+.+.|.+|++||+|+++|..+.
T Consensus 173 ~t~l~~~~~~~~l~i~~~~d~~l~n~y~~~~v~p~~~~~--------~~~~~a~~f~~~l~s~~~q~~i~ 234 (236)
T 3lr1_A 173 GTYNAFKGAKTDLVILFQGEKGLFNPYGIMAVNPKKFPH--------VKYDLAMKLIDYVTGPEGLKIIS 234 (236)
T ss_dssp HHHHHHBTTTBCCEEEEEC---CCEEEEEEEECTTTCTT--------SCHHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhhcccCCCCeEEEEcCCcceeeceeEEEECcccCCc--------cCHHHHHHHHHHhcCHHHHHHHh
Confidence 334444323445676 55444444455555444444431 12459999999999999998876
No 88
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=87.94 E-value=5.6 Score=35.23 Aligned_cols=140 Identities=9% Similarity=0.040 Sum_probs=72.0
Q ss_pred CeEeeeeeeceEEEEEeccc-cccc------C--CCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHHhh--
Q 036082 18 KICAAPYRWGTVVIAYKKSK-FRKH------N--LAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQ-- 86 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~-~~~~------G--l~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~~~-- 86 (315)
.+...|+.....++++|++- +... + .-..++|+||--|...=.+.+......+... +.+ .|.+.
T Consensus 72 ~l~~~~i~~d~lvvvv~~~~p~~~lt~~~L~~if~G~i~~W~~l~~~~~~i~~i~r~~gSgtr~~--f~~---~l~~~~~ 146 (264)
T 4ecf_A 72 QLVDHRVAVVGITPIVNKKVGVKNLSTNQLIKIFTGQITNWKEVGGADQSIVLINRAQGSGTRAT--FEQ---FGLANHR 146 (264)
T ss_dssp GEECCEEEEEEEEEEECTTSSCSEECHHHHHHHHTTSCCBGGGGTSCSCBCEEEEECTTCHHHHH--HHH---HTSTTCC
T ss_pred CCEEEEEEEEEEEEEEcCCCcccccCHHHHHHHHCCCCcccccCCCCCCeeEEeccCCCCcHHHH--HHH---HhccCCC
Confidence 46678999999999999863 1110 0 0135778777433221123333322211111 011 11110
Q ss_pred ---------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEEE------eC-----C-CceeeeeeEEEeCCCCCccc
Q 036082 87 ---------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVV------PK-----S-GASLWADLWAIPAASRLETK 145 (315)
Q Consensus 87 ---------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~~------Pk-----e-G~~~~~d~~~I~k~s~~~~~ 145 (315)
+....+.+.++.-.+++...+.+. ..++.+ |. . +-++.-..+.+.++. ...
T Consensus 147 ~~~~~~~~s~~~i~~~V~~~~~aIg~~~~~~~~------~~l~~l~i~~v~pt~~~i~~g~ypl~r~~~~~~~~~-~~~- 218 (264)
T 4ecf_A 147 SKTAQEQDSSGMVRSIVATTPGAISYVAFSYVN------KTVQALSLNHVAPTEVNVTTNDWRIWSYEHLYTKGH-PTG- 218 (264)
T ss_dssp CCSCEEESSHHHHHHHHHHSTTEEEEEEGGGCC------TTSEECEETTBCCCHHHHHTTSSCCEEEEEEEEESS-CCH-
T ss_pred CCcccccCCHHHHHHHHhcCCCcEEEEEhHHhh------CCceEEEEccccCCHHHhhcCCCCceeEEEEEEcCC-CcH-
Confidence 234566777777666665433321 234432 21 1 234544444455443 333
Q ss_pred ccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCC
Q 036082 146 QIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGA 182 (315)
Q Consensus 146 ~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~ 182 (315)
++.+||+|++++++|..+..+ .||.
T Consensus 219 -----------~~~~F~~~~~s~~gq~~~~~~-~G~~ 243 (264)
T 4ecf_A 219 -----------LTKAFITYVQSPAIQNTLVRQ-LGYL 243 (264)
T ss_dssp -----------HHHHHHHHHHSHHHHTTHHHH-TTCB
T ss_pred -----------HHHHHHHHHhCchhHHHHHHH-CCCe
Confidence 899999999999998645433 4664
No 89
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=87.50 E-value=9.1 Score=33.88 Aligned_cols=140 Identities=9% Similarity=0.084 Sum_probs=69.9
Q ss_pred CeEeeeeeeceEEEEEeccc-ccccC--------CCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHHhh--
Q 036082 18 KICAAPYRWGTVVIAYKKSK-FRKHN--------LAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQ-- 86 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~-~~~~G--------l~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~~~-- 86 (315)
.+...|+.....++++|++. +...- .-..++|+||--|..+=.+........+... +.+ .|...
T Consensus 72 ~l~~~~ia~d~lvvvv~~~~~~~~lt~~~L~~If~G~i~~W~~lg~p~~~I~~v~R~~gSGTr~~--f~~---~l~~~~~ 146 (265)
T 4exl_A 72 ALVDHKVAVAGLALIVNKEVDVDNLTTEQLRQIFIGEVTNWKEVGGKDLPISVINRAAGSGSRAT--FDT---VIMEGQS 146 (265)
T ss_dssp GEECCEEEEEEEEEEECTTCCCCEECHHHHHHHHTTSCCBGGGBTSCSCBCEEEEECTTSHHHHH--HHH---HTTTTCC
T ss_pred CceEeeEEEEEEEEEECCCCccccCCHHHHHHHHcCCCCcccccCCCCCeeEEEecCCCCcHHHH--HHH---HHccCCC
Confidence 45678999999999999863 11100 0134667775432221123333322211111 111 11111
Q ss_pred --------cH-HHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEEEeCCC------------ceeeeeeEEEeCCCCCccc
Q 036082 87 --------SA-HHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSG------------ASLWADLWAIPAASRLETK 145 (315)
Q Consensus 87 --------~~-~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~~PkeG------------~~~~~d~~~I~k~s~~~~~ 145 (315)
+. ...+.+.++...++....+.+. .+++.++-+| -+++-..+.+.++. ...
T Consensus 147 ~~~~~~~~s~~~v~~~V~~~~~aIGy~~~~~~~------~~lk~l~i~gv~pt~~~i~~g~YPl~r~~~~~~~~~-~~~- 218 (265)
T 4exl_A 147 AMQSQEQDSNGAVKSIVSKSPGAISYLSLTYID------DSVKSMKLNGYDLSPENISSNNWPLWSYEHMYTLGQ-PNE- 218 (265)
T ss_dssp CCSCEEECCHHHHHHHHHHSTTEEEEEEGGGCC------TTSEECEETTBCCCHHHHHTTSSCCEEEEEEEEESS-CCH-
T ss_pred CccccccCChHHHHHHHhcCCCeEEEEEHHHhh------CcccEeEECCcCCCHHHhccCCCCCeeeEEEEECCC-chH-
Confidence 22 3456677766666665433321 1244322122 24444444444443 333
Q ss_pred ccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCC
Q 036082 146 QIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGA 182 (315)
Q Consensus 146 ~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~ 182 (315)
++.+||+|++++++|..+..+ .||.
T Consensus 219 -----------~~~~F~~~~~s~~gq~~~~~~-~G~v 243 (265)
T 4exl_A 219 -----------LAAEFLNFVLSDETQEGIVKG-LKYI 243 (265)
T ss_dssp -----------HHHHHHHHHHSHHHHHTHHHH-TTCB
T ss_pred -----------HHHHHHHHHhCcchHHHHHHh-CCCc
Confidence 899999999999999444433 4663
No 90
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=86.76 E-value=1.9 Score=38.58 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcHHHHHHHH
Q 036082 155 SPLIHQWIEFCLQTARALPFK 175 (315)
Q Consensus 155 ~~~A~~FInfllspe~q~~~~ 175 (315)
.+.|.+|++||+||++|..+.
T Consensus 218 ~~~a~~f~~~l~s~~~q~~i~ 238 (242)
T 3kn3_A 218 YKGAKQFIDWIVSEKMQAEIA 238 (242)
T ss_dssp HHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHH
Confidence 559999999999999999887
No 91
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=85.18 E-value=11 Score=31.77 Aligned_cols=105 Identities=13% Similarity=0.051 Sum_probs=64.0
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHH-Hhh-------cHHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALL-ANQ-------SAHH 90 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L-~~~-------~~~~ 90 (315)
.++.|+.....+++++++.-. +++|++||-. .+|++....... ..+... ... ..+.
T Consensus 120 ~~s~p~~~~~~~~~~~~~~~~-----~i~~~~dL~g----~~i~~~~g~~~~-------~~l~~~~~~~~~~~~~~~~~~ 183 (269)
T 4i62_A 120 DFSTPYYTAKNKLIVKKSDLA-----TYQSVNDLAQ----KKVGAQKGSIQE-------TMAKDLLQNSSLVSLPKNGNL 183 (269)
T ss_dssp EECSCCEECCEEEEEEGGGTT-----TCSSGGGGC-----CEEEEETTSHHH-------HHHHHHCTTSEEEEESCHHHH
T ss_pred ecccchhhcceEEEEECCccc-----cccCHHHhCC----CeEEEecCchHH-------HHHHHhCCCCcEEecCCHHHH
Confidence 456788888889999888422 5789999842 246665432210 111111 111 3467
Q ss_pred HHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCCCceeeeeeEEEeCC
Q 036082 91 LKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKSGASLWADLWAIPAA 139 (315)
Q Consensus 91 ~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~PkeG~~~~~d~~~I~k~ 139 (315)
.+++.+|++++++.+...+.....+.+.+.. .+........-.++++++
T Consensus 184 ~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (269)
T 4i62_A 184 ITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKD 234 (269)
T ss_dssp HHHHHTTSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESS
T ss_pred HHHHHcCCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCC
Confidence 8899999999999998877776666666665 332211122336677776
No 92
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=84.33 E-value=13 Score=30.81 Aligned_cols=106 Identities=7% Similarity=-0.011 Sum_probs=63.9
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCC-ceEeecChHHHhhHHHHHHHHHHH-Hhh-------cH
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSIAVQLNLALL-ANQ-------SA 88 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~G-ki~~~d~~~~~~g~a~~~~a~~~L-~~~-------~~ 88 (315)
-.|+.||.....+++++++.-. .+++++||-. +| +|++....... ..+... ... ..
T Consensus 92 ~~fs~p~~~~~~~~~~~~~~~~-----~i~~~~dL~~---~g~~v~~~~g~~~~-------~~l~~~~~~~~~~~~~~~~ 156 (239)
T 3kbr_A 92 AYFSIPYLRDGKTPITLCSEEA-----RFQTLEQIDQ---PGVTAIVNPGGTNE-------KFARANLKKARILVHPDNV 156 (239)
T ss_dssp CEECSCSEEECEEEEEEGGGGG-----GGSSHHHHSS---TTCEEEECTTSHHH-------HHHHHHCSSSEEEECCCTT
T ss_pred cccchHHhccCcEEEEECCccc-----ccCCHHHhcC---CCcEEEEcCCCcHH-------HHHHHhCCCCceEEeCCHH
Confidence 3467788888888999887532 4689999853 23 45554432110 111111 111 34
Q ss_pred HHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeC
Q 036082 89 HHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPA 138 (315)
Q Consensus 89 ~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k 138 (315)
+..+++.+|++++++.+...+....++.+.+.. .+..-.....-.++++|
T Consensus 157 ~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 207 (239)
T 3kbr_A 157 TIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR 207 (239)
T ss_dssp THHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS
T ss_pred HHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC
Confidence 678899999999999888777766666667666 32211112223567777
No 93
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=80.74 E-value=22 Score=29.04 Aligned_cols=129 Identities=12% Similarity=0.012 Sum_probs=76.0
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHH-hh-----cHHHH
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLA-NQ-----SAHHL 91 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~-~~-----~~~~~ 91 (315)
-.|..||.....+++++++.- ..+.+++||-. .+|++....... ..+.... +. ..+..
T Consensus 85 ~~~s~p~~~~~~~~~~~~~~~-----~~i~~~~dL~g----~~v~~~~g~~~~-------~~l~~~~~~~~~~~~~~~~~ 148 (233)
T 1ii5_A 85 ITFTQPYFSSGIGLLIPGTAT-----PLFRSVGDLKN----KEVAVVRDTTAV-------DWANFYQADVRETNNLTAAI 148 (233)
T ss_dssp EEECCCCEEEEEEEEEEGGGT-----TTCSSGGGGTT----CEEEEETTSHHH-------HHHHHTTCEEEEESSHHHHH
T ss_pred eEEccceeecCeEEEEECCCC-----CCCCCHHHhCC----CeEEEECCccHH-------HHHHHcCCCeEEcCCHHHHH
Confidence 346668888888888888752 14688888842 246665433211 0111110 00 24678
Q ss_pred HHHHcCCEEEEEEehhhHHHHHHcCC--CeEEEeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHh-cH
Q 036082 92 KAFGIGDVWVAVGWSSDVLPAVKHMS--NVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCL-QT 168 (315)
Q Consensus 92 ~~~~~Gev~~~~~ws~~~~~~~~~~~--~i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfll-sp 168 (315)
+++.+|++++++.+...+........ .+.+.+.. .....-.++++++.+..+ ...++|.-+. +.
T Consensus 149 ~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~l~~------------~~~~~l~~l~~~g 215 (233)
T 1ii5_A 149 TLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIR-VSLEPYGFVLKENSPLQK------------TINVEMLNLLYSR 215 (233)
T ss_dssp HHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCC-SEEEEEEEEEETTCTTHH------------HHHHHHHHHHHTT
T ss_pred HHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCcc-ccccceEEEEcCCchHHH------------HHHHHHHHHHhCC
Confidence 89999999999988776655554443 45443321 122234778888865443 6677777776 44
Q ss_pred HHHHHHH
Q 036082 169 ARALPFK 175 (315)
Q Consensus 169 e~q~~~~ 175 (315)
+.+..+.
T Consensus 216 ~~~~i~~ 222 (233)
T 1ii5_A 216 VIAEFTE 222 (233)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 5555554
No 94
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=79.34 E-value=27 Score=29.36 Aligned_cols=113 Identities=13% Similarity=0.094 Sum_probs=60.1
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeec-ChH-HHhhHH---HHHHHHHHHHh--------
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVN-SPR-EVIGSI---AVQLNLALLAN-------- 85 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d-~~~-~~~g~a---~~~~a~~~L~~-------- 85 (315)
.|+.||.....+|+++++. ++++++||-... .-+++... ... +.+.-. .+...+..+..
T Consensus 101 ~fs~py~~~~~~~~~~~~~-------~i~~~~dL~g~~-~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T 3g3k_A 101 DFSKPFMTLGISILYRKGT-------PIDSADDLAKQT-KIEYGAVEDGATMTFFKRSKISTYDKMWAFMSSRRQSVLVK 172 (259)
T ss_dssp EECSCSEEECEEEEEESSS-------SCCSHHHHHTCS-SSEEEEETTSHHHHHHHHCCSHHHHHHHHHHHHTHHHHEES
T ss_pred eeeeeeeeCCEEEEEeCCc-------cccCHHHhccCC-CceEEEecCcHHHHHHhhccchhHHHHHHHHHhcCCCcccC
Confidence 4678999888999998763 468999996422 11244332 211 111100 12222222211
Q ss_pred hcHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEEEeCCCceeeeeeEEEeCCCC
Q 036082 86 QSAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASR 141 (315)
Q Consensus 86 ~~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~~PkeG~~~~~d~~~I~k~s~ 141 (315)
...+..+++.+|+ ++.+..........+...++...+..- ....-+++++|+++
T Consensus 173 ~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~a~~k~~~ 226 (259)
T 3g3k_A 173 SNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQIGGLI-DSKGYGVGTPMGSP 226 (259)
T ss_dssp SHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTTEEEESSCS-SCEEECCEEETTCT
T ss_pred CHHHHHHHHHhCC-eEEEechHHHHHHhcCCceEEEecccc-eeeeEEEEECCCCc
Confidence 1245678899999 655554444444444466666633211 11233788899865
No 95
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=78.15 E-value=28 Score=29.09 Aligned_cols=131 Identities=16% Similarity=0.040 Sum_probs=73.4
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHH-Hhh-------cHHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALL-ANQ-------SAHH 90 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L-~~~-------~~~~ 90 (315)
.++.||.....+++++++.- .+++++||-. .+|++....... ..+... ... ..+.
T Consensus 101 ~~s~p~~~~~~~~~~~~~~~------~i~~~~dL~g----~~i~v~~g~~~~-------~~l~~~~~~~~~~~~~~~~~~ 163 (249)
T 4f3p_A 101 DFSDPYYDSGLAAMVQANNT------TIKSIDDLNG----KVIAAKTGTATI-------DWIKAHLKPKEIRQFPNIDQA 163 (249)
T ss_dssp EECSCCEEEEEEEEEETTCC------SCCSSGGGTT----SEEEEETTSHHH-------HHHHHHCCCSEEEEESSHHHH
T ss_pred ceecceeeccEEEEEECCCC------CcCChHHhCC----CEEEEeCCChHH-------HHHHhcCCCceEEEcCCHHHH
Confidence 35668887788888877641 4678888842 246655433210 111111 111 2467
Q ss_pred HHHHHcCCEEEEEEehhhHHHHHHcCC--CeEEEeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcH
Q 036082 91 LKAFGIGDVWVAVGWSSDVLPAVKHMS--NVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQT 168 (315)
Q Consensus 91 ~~~~~~Gev~~~~~ws~~~~~~~~~~~--~i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllsp 168 (315)
.++|.+|++++++.+...+....+..+ ++.+.+.. .....-.++++++.+-.+ .-.++|.-+...
T Consensus 164 ~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~k~~~l~~------------~l~~~l~~l~~~ 230 (249)
T 4f3p_A 164 YLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAP-VSGDKYGIGFPKGSPLVA------------KVNAELARMKAD 230 (249)
T ss_dssp HHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEE-EEEEEEEEEEETTCTHHH------------HHHHHHHHHHHH
T ss_pred HHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCC-CCCccEEEEEcCCchHHH------------HHHHHHHHHHhC
Confidence 889999999999998877766665543 35552211 111223678888875222 444555555443
Q ss_pred -HHHHHHHhhhCC
Q 036082 169 -ARALPFKQEVIP 180 (315)
Q Consensus 169 -e~q~~~~~e~~~ 180 (315)
+.+..+. .+++
T Consensus 231 g~~~~i~~-k~~~ 242 (249)
T 4f3p_A 231 GRYAKIYK-KWFG 242 (249)
T ss_dssp THHHHHHH-HHHS
T ss_pred CcHHHHHH-HHcC
Confidence 4444444 4544
No 96
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=77.93 E-value=28 Score=28.73 Aligned_cols=105 Identities=11% Similarity=-0.006 Sum_probs=63.8
Q ss_pred eEeeeee--eceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHHhh-------cHH
Q 036082 19 ICAAPYR--WGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQ-------SAH 89 (315)
Q Consensus 19 ~Y~vP~~--~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~~~-------~~~ 89 (315)
.| .||. ....+++.+++ . .+++++||-. .+|++....... ..+..+... ..+
T Consensus 89 ~~-~p~~~~~~~~~~~~~~~---~----~i~~~~dL~g----~~i~v~~g~~~~-------~~l~~~~~~~~~~~~~~~~ 149 (242)
T 3del_B 89 LM-IPYYGEEIKHLVLVFKG---E----NKHPLPLTQY----RSVAVQTGTYQE-------AYLQSLSEVHIRSFDSTLE 149 (242)
T ss_dssp EE-EEEEEEEESEEEEEEES---C----CSCCCCGGGS----SCEEEETTSHHH-------HHHHHSTTCCEEEESSHHH
T ss_pred cc-eeeeecCCceEEEEeCC---C----CCCCHHHhCC----CEEEEEcCcHHH-------HHHHhCCCceEEEECCHHH
Confidence 46 8888 66678888877 1 5788888841 246665432211 111111111 346
Q ss_pred HHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCCCce-eeeeeEEEeCCCCCcc
Q 036082 90 HLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKSGAS-LWADLWAIPAASRLET 144 (315)
Q Consensus 90 ~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~PkeG~~-~~~d~~~I~k~s~~~~ 144 (315)
..++|.+|++++++.....+....+..+.+.+ .|-.... ...-.++++++ +++
T Consensus 150 ~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~ 205 (242)
T 3del_B 150 VLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASD--RPA 205 (242)
T ss_dssp HHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETT--CHH
T ss_pred HHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeCC--CHH
Confidence 78899999999999988877777777776666 2322222 11136788887 444
No 97
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=77.19 E-value=30 Score=28.72 Aligned_cols=106 Identities=14% Similarity=0.019 Sum_probs=62.5
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCC-ceEeecChHHHhhHHHHHHHHHHH-Hhh-------cH
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSIAVQLNLALL-ANQ-------SA 88 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~G-ki~~~d~~~~~~g~a~~~~a~~~L-~~~-------~~ 88 (315)
-.|+.||.....+++++++.-. .+++++||.+ +| +|++....... ..+... .+. ..
T Consensus 82 ~~~s~p~~~~~~~~~~~~~~~~-----~i~~~~dL~~---~g~~i~v~~g~~~~-------~~l~~~~~~~~~~~~~~~~ 146 (245)
T 3k4u_A 82 VNFVEPYIVVGQSLLVKKGLEK-----GVKSYKDLDK---PELTLVTKFGVSAE-------YAAKRLFKNAKLKTYDTEA 146 (245)
T ss_dssp SEECSCSEEECEEEEEETTTTT-----TCCSGGGGCC---SSCEEEEETTSHHH-------HHHHHHCSSSEEEEESSHH
T ss_pred cCcchhhheeceEEEEECCccc-----ccCCHHHhcc---CCcEEEEeCCcHHH-------HHHHhhCCcCCEEEeCCHH
Confidence 3567799888889999888521 5789999864 24 46665443211 111111 111 34
Q ss_pred HHHHHHHcCCEEEEEEehhhHHHHHHcC--CCeEEEeCCCceeeeeeEEEeCC
Q 036082 89 HHLKAFGIGDVWVAVGWSSDVLPAVKHM--SNVAVVPKSGASLWADLWAIPAA 139 (315)
Q Consensus 89 ~~~~~~~~Gev~~~~~ws~~~~~~~~~~--~~i~~~PkeG~~~~~d~~~I~k~ 139 (315)
+..++|.+|++++++.+...+....... ..+...+..-. ...-.++++++
T Consensus 147 ~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~ 198 (245)
T 3k4u_A 147 EAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLT-YEPLGWAIKKG 198 (245)
T ss_dssp HHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCS-CEEECCEECTT
T ss_pred HHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCcc-cccEEEEEcCC
Confidence 6788999999999999876665554433 23443332111 22336777776
No 98
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=77.17 E-value=3.2 Score=37.39 Aligned_cols=73 Identities=11% Similarity=-0.033 Sum_probs=43.2
Q ss_pred HHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE------EeC-----CCc-eeeeeeEEEeCCCCCcccccCCCCCCCHH
Q 036082 89 HHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV------VPK-----SGA-SLWADLWAIPAASRLETKQIGGRVRGLSP 156 (315)
Q Consensus 89 ~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~------~Pk-----eG~-~~~~d~~~I~k~s~~~~~~~~~~~~~~~~ 156 (315)
..++.+++..-+|+...-+.+ ..+++. .|. .|. +++-..+.+.++.+. .
T Consensus 56 ~vv~~Va~~~~AIGY~~~~y~------~~~vk~l~idgV~Pt~e~i~~g~YPlsRply~y~~~~~~-~------------ 116 (265)
T 4h1x_A 56 GVLSAVQGNANAIGYISLGSL------TKSVKALEIDGVKASRDTVLDGEYPLQRPFNIVWSSNLS-K------------ 116 (265)
T ss_dssp HHHHHHHHCTTEEEEEEGGGC------CTTSEECEETTBCCSHHHHHTTCSCSEEEEEEEECTTCC-H------------
T ss_pred HHHHHHHcCCCcEEEeehHHh------hcccccceecccCcchhhhhcCCCCeEEEEEEEECCCCC-H------------
Confidence 455666777766665443322 112222 332 333 455555555555443 3
Q ss_pred HHHHHHHHHhcHHHHHHHHhhhCCCC
Q 036082 157 LIHQWIEFCLQTARALPFKQEVIPGA 182 (315)
Q Consensus 157 ~A~~FInfllspe~q~~~~~e~~~~~ 182 (315)
++++||+|++|++.|..+.+ .||.
T Consensus 117 ~vk~Fl~f~lS~~GQ~iv~~--~Gyv 140 (265)
T 4h1x_A 117 LGQDFISFIHSKQGQQVVTD--NKFI 140 (265)
T ss_dssp HHHHHHHHHHBHHHHHHHHH--TTCB
T ss_pred HHHHHHHHHhhcccceeeec--CCcE
Confidence 79999999999999987763 4764
No 99
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=76.83 E-value=26 Score=29.46 Aligned_cols=105 Identities=14% Similarity=0.065 Sum_probs=59.6
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHH-HHHhh-------cHHHH
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLA-LLANQ-------SAHHL 91 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~-~L~~~-------~~~~~ 91 (315)
|+.||.....+++++++... .+++++||-. .+|++....... ..+. .+... ..+..
T Consensus 94 fs~py~~~~~~~~v~~~~~~-----~~~~~~dl~g----~~i~v~~g~~~~-------~~l~~~~~~~~i~~~~~~~~~~ 157 (243)
T 4h5g_A 94 FSIPYYENKISFLVHKADVE-----KYKDLTSLES----ANIAAQKGTVPE-------SMVKEQLPKAQLTSLTNMGEAV 157 (243)
T ss_dssp ECSCSBCCCEEEEEEGGGTT-----TCCSHHHHHT----SEEEEETTSHHH-------HHHHHHCTTSEEEEESCHHHHH
T ss_pred ccCccccCcccccccccccc-----cccccccCCC----CEEEecCCcHHH-------HHHHHhcccceeEEeCCHHHHH
Confidence 67898888888888776432 4678888742 245555432110 1111 11111 34667
Q ss_pred HHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCCCceeeeeeEEEeCCC
Q 036082 92 KAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKSGASLWADLWAIPAAS 140 (315)
Q Consensus 92 ~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~PkeG~~~~~d~~~I~k~s 140 (315)
++|.+|++++.+.....+.....+.+.... ++..-.....-+++++|+.
T Consensus 158 ~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~ 208 (243)
T 4h5g_A 158 NELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNS 208 (243)
T ss_dssp HHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSC
T ss_pred HHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCC
Confidence 889999999888776655555555565554 2211111112367888873
No 100
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=76.56 E-value=24 Score=28.59 Aligned_cols=130 Identities=12% Similarity=-0.040 Sum_probs=71.5
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHH-hh-----cHHHHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLA-NQ-----SAHHLK 92 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~-~~-----~~~~~~ 92 (315)
.+..|+.....+++.+++.-.. ....|++||-. -+|++...... . ..+.... +. ..+..+
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~dL~g----~~i~~~~g~~~----~---~~l~~~~~~~~~~~~~~~~~~ 145 (228)
T 2pyy_A 80 DFSLPIFASGLQIMVRNLESGT---GDIRSIDDLPG----KVVATTAGSTA----A---TYLREHHISVLEVPKIEEAYK 145 (228)
T ss_dssp EECSCSEEEEEEEEEEC--------CCCCSGGGCTT----CEEEEETTSHH----H---HHHHHTTCEEEEESSHHHHHH
T ss_pred eecccchhcceEEEEECCcccc---CCcCCHHHcCC----CeEEEEcCcHH----H---HHHHHcCCceEecCCHHHHHH
Confidence 4566888778888888774111 15678988842 24665543321 0 1111100 00 246788
Q ss_pred HHHcCCEEEEEEehhhHHHHHHcCC--CeEEEeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhc-HH
Q 036082 93 AFGIGDVWVAVGWSSDVLPAVKHMS--NVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQ-TA 169 (315)
Q Consensus 93 ~~~~Gev~~~~~ws~~~~~~~~~~~--~i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInflls-pe 169 (315)
++.+|++++++.....+.......+ .+.+.+.. .....-.++++++.+-.+ ...++|..+.. .+
T Consensus 146 ~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~------------~~~~~l~~l~~~g~ 212 (228)
T 2pyy_A 146 ALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSI-LREESYGIILPNNSPYRK------------PINQALLNLKENGT 212 (228)
T ss_dssp HHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEE-EEEEEECCEECTTCTTHH------------HHHHHHHHHHHTTH
T ss_pred HHHcCCCCEEEecHHHHHHHHHhCCCCcEEEeccc-ccceeEEEEEeCChHHHH------------HHHHHHHHHHhCCc
Confidence 9999999998888766655554433 45553211 111233567777654433 66677777664 45
Q ss_pred HHHHHH
Q 036082 170 RALPFK 175 (315)
Q Consensus 170 ~q~~~~ 175 (315)
.+..+.
T Consensus 213 ~~~i~~ 218 (228)
T 2pyy_A 213 YQSLYD 218 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 101
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=75.44 E-value=35 Score=28.52 Aligned_cols=104 Identities=11% Similarity=-0.043 Sum_probs=63.9
Q ss_pred CeEeeeee--eceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHHhh-------cH
Q 036082 18 KICAAPYR--WGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQ-------SA 88 (315)
Q Consensus 18 ~~Y~vP~~--~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~~~-------~~ 88 (315)
-.+ .||. ....+++++++. . +++|++||-. .+|++....... ..+..+... ..
T Consensus 108 ~~~-~p~~~~~~~~~~~~~~~~--~----~i~~~~dL~g----~~i~~~~g~~~~-------~~l~~~~~~~~~~~~~~~ 169 (268)
T 3qax_A 108 IAL-LPYYGDEVQELMVVSKRS--L----ETPVLPLTQY----SSVAVQTGTYQE-------HYLLSQPGICVRSFDSTL 169 (268)
T ss_dssp SEE-EEEECCCBCEEEEEEETT--S----CSCCCCGGGS----SCEEEETTSHHH-------HHHHTSTTCCEEEESCHH
T ss_pred eee-ecceecccceEEEEECCC--C----CCCCHHHhCC----CEEEEecCcHHH-------HHHHhCCCceEEecCCHH
Confidence 346 8888 777888888875 1 5788888842 146655432211 111111111 34
Q ss_pred HHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCCCce-eeeeeEEEeCC
Q 036082 89 HHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKSGAS-LWADLWAIPAA 139 (315)
Q Consensus 89 ~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~PkeG~~-~~~d~~~I~k~ 139 (315)
+..+++.+|++++++.+...+....++.+.+.+ .|-.... ...-.++++++
T Consensus 170 ~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 223 (268)
T 3qax_A 170 EVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKD 223 (268)
T ss_dssp HHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTT
T ss_pred HHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeCC
Confidence 678899999999999998888877777777666 2222122 11146788877
No 102
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=73.19 E-value=43 Score=28.50 Aligned_cols=105 Identities=11% Similarity=0.030 Sum_probs=61.7
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHHhh-------cHHH
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQ-------SAHH 90 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~~~-------~~~~ 90 (315)
-.++.||.....+++++++.- .+++++||-. .+|++....... . .+.+. +... ..+.
T Consensus 109 ~~fs~p~~~~~~~l~~~~~~~------~i~~~~dL~g----~~i~v~~g~~~~-~--~l~~~---~~~~~~~~~~~~~~~ 172 (267)
T 3mpk_A 109 LSFSRPYVRNGMVIVTRQDPD------APVDADHLDG----RTVALVRNSAAI-P--LLQRR---YPQAKVVTADNPSEA 172 (267)
T ss_dssp EEECSCSEEECEEEEEESSTT------SCSSGGGCTT----CEEEEETTCTHH-H--HHHHH---CTTSEEEEESSHHHH
T ss_pred eEechhhccCceEEEEECCCC------CCCCHHHHCC----CEEEEeCCchhH-H--HHHHh---CCCcEEEEeCCHHHH
Confidence 346678888888899887741 4678888842 256666532210 0 01111 1011 3467
Q ss_pred HHHHHcCCEEEEEEehhhHHHHHHc--CCCeEE-EeCCCceeeeeeEEEeCC
Q 036082 91 LKAFGIGDVWVAVGWSSDVLPAVKH--MSNVAV-VPKSGASLWADLWAIPAA 139 (315)
Q Consensus 91 ~~~~~~Gev~~~~~ws~~~~~~~~~--~~~i~~-~PkeG~~~~~d~~~I~k~ 139 (315)
.+++.+|++++++.....+....++ ..++.+ .+... .-..-.++++++
T Consensus 173 l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~k~ 223 (267)
T 3mpk_A 173 MLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDL-PPAEIALATTRG 223 (267)
T ss_dssp HHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSS-CCEEEEEEEETT
T ss_pred HHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCC-CceeEEEEEcCC
Confidence 7899999999999887666554443 445776 33221 122337788887
No 103
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=73.04 E-value=15 Score=31.35 Aligned_cols=143 Identities=9% Similarity=0.019 Sum_probs=77.3
Q ss_pred CeEeeeeeeceEEEEEecccc-cccCC--------CCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHH-H-----
Q 036082 18 KICAAPYRWGTVVIAYKKSKF-RKHNL--------APIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLA-L----- 82 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~-~~~Gl--------~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~-~----- 82 (315)
.....|+.....+++++++.- ..... ..+.+|+||.+++.+-.+...+....... .+...+. .
T Consensus 94 ~~~~~~l~~~~~~~v~~~~~pl~~~~~~~l~~~~~~~~~~~~dL~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~ 171 (290)
T 1twy_A 94 TLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRY--SFESLMGLTKTVKD 171 (290)
T ss_dssp TCEEEEEEEEEEEEEECTTCCCCEECHHHHHHHHHTSCCBGGGGTSCSCBCEEEEECTTCHHHH--HHHHHHTCEEEETT
T ss_pred CceEEEEEeeeEEEEECCCCCccccCHHHHHHHhcCCCCCccccCCCCCeeEEEecCCCchHHH--HHHHHHhccccccc
Confidence 356788888889999998752 11000 02489999987654334444332211111 1111111 0
Q ss_pred -----HHhh------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeC---------CCc-eeeee-eEEEeC
Q 036082 83 -----LANQ------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPK---------SGA-SLWAD-LWAIPA 138 (315)
Q Consensus 83 -----L~~~------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~Pk---------eG~-~~~~d-~~~I~k 138 (315)
.... .....+++.+|+..+++.....+ ...+.. ++. .|. +.... .++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~gi~~~p~~~~------~~~l~~~~l~~~~p~~~~i~~~~~~~~~~~~l~~~~ 245 (290)
T 1twy_A 172 REVSDVAPTALVVNSNSMMKTLVNHNTQAVGFISIGSV------DKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYS 245 (290)
T ss_dssp EEEECSCTTSEEESSHHHHHHHHHHCTTEEEEEEGGGC------CTTSEECEETTBCCCHHHHHTTCSCCEEEEEEEECT
T ss_pred ccccccCccccccCChHHHHHHHhcCCCcEEEeeHHHh------hCCceEeEecCCCCCHHHHhcCCCccEEEEEEEEcC
Confidence 0000 23456778888677777665433 134554 321 111 22223 333345
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCC
Q 036082 139 ASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGAS 183 (315)
Q Consensus 139 ~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~ 183 (315)
+ ++.. .+..|++|+.+.+.|..+.+ .|+.+
T Consensus 246 ~-~~~~------------~~~~f~~~l~~~~~q~~~~~--~g~~p 275 (290)
T 1twy_A 246 D-NADE------------QTKEFIAFLKSESAKKLIVE--YGYIM 275 (290)
T ss_dssp T-TCCH------------HHHHHHHHHHSHHHHHHHHH--TTCBC
T ss_pred C-CCCH------------HHHHHHHHHhCHHHHHHHHH--CCCcc
Confidence 5 6555 89999999999999988764 35543
No 104
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=72.14 E-value=48 Score=28.68 Aligned_cols=102 Identities=15% Similarity=0.028 Sum_probs=60.9
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCC-ceEeecChHHHhhHHHHHHHHHHHHhh-------cHHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSIAVQLNLALLANQ-------SAHH 90 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~G-ki~~~d~~~~~~g~a~~~~a~~~L~~~-------~~~~ 90 (315)
.+..||.....+|+.+++. .++|++||- | +|++....... . .+.+. +.+. ..+.
T Consensus 136 ~~~~p~~~~~~~l~~~~~~-------~i~sl~dL~-----gk~v~~~~g~~~~--~-~l~~~---~~~~~~~~~~~~~~~ 197 (291)
T 2yjp_A 136 DFADPYMKVALGVVSPKNK-------PITDMAQLK-----DQTLLVNKGTTAD--A-FFTKS---HPEVKLLKFDQNTET 197 (291)
T ss_dssp EECCCCEEECEEEEEETTS-------CCCSGGGGT-----TSEEEEETTSHHH--H-HHHHH---CTTSEEEEESSHHHH
T ss_pred eeccCeeecceEEEEeCCC-------CCCCHHHhC-----CCEEEEecCCcHH--H-HHHHh---CCCceEEEeCCHHHH
Confidence 4566887778888888764 468899884 4 46655432211 0 01111 1111 3467
Q ss_pred HHHHHcCCEEEEEEehhhHHHHHHcCCCeEEEeCCCceeeee-eEEEeCC
Q 036082 91 LKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWAD-LWAIPAA 139 (315)
Q Consensus 91 ~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~~PkeG~~~~~d-~~~I~k~ 139 (315)
.+++.+|++++++.+...+.......+.+.+.+..-.. ... .+++.++
T Consensus 198 ~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~ 246 (291)
T 2yjp_A 198 FDALKDGRGVALAHDNALLWAWAKENPNFEVAIGNLGP-AEFIAPAVQKG 246 (291)
T ss_dssp HHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEECCSSS-CEEECCEEETT
T ss_pred HHHHHcCCccEEEecHHHHHHHHHhCCCeEEcCCcccC-CcceEEEEeCC
Confidence 88999999999999887776666666666663321111 122 5677776
No 105
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=69.41 E-value=34 Score=28.25 Aligned_cols=102 Identities=12% Similarity=0.003 Sum_probs=62.0
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHHhh-------cHHH
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQ-------SAHH 90 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~~~-------~~~~ 90 (315)
-.++.||.....+++++++. ++++++||-. .+|++....... . .+. +.+... ..+.
T Consensus 81 ~~fs~p~~~~~~~~~~~~~~-------~~~~~~dL~g----~~i~~~~g~~~~--~-~~~---~~~~~~~~~~~~~~~~~ 143 (237)
T 3kzg_A 81 FIFSLPYMESNSQYITTVDS-------KISTFDDLHG----KKIGVRKGTPYA--R-QVL---SENRNNQVIFYELIQDM 143 (237)
T ss_dssp CEECCCSBCCEEEEEEETTC-------SCCSGGGGTT----CEEEEETTSTHH--H-HHH---HTCSSCEEEEESSHHHH
T ss_pred ceeeeeeeecceEEEEECCC-------CCCCHHHhCC----CEEEEecCCHHH--H-HHH---HhCCCCcEEEeCCHHHH
Confidence 35677998888899988753 4688888842 246665432210 0 001 111111 3467
Q ss_pred HHHHHcCCEEEEEEehhhHHHHHHcCC--------CeEEEe--C-CCceeeeeeEEEeCC
Q 036082 91 LKAFGIGDVWVAVGWSSDVLPAVKHMS--------NVAVVP--K-SGASLWADLWAIPAA 139 (315)
Q Consensus 91 ~~~~~~Gev~~~~~ws~~~~~~~~~~~--------~i~~~P--k-eG~~~~~d~~~I~k~ 139 (315)
.+++.+|++++++.+...+.....+.+ ++.+.+ - ... .-.++++|+
T Consensus 144 ~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~~~~k~ 200 (237)
T 3kzg_A 144 LLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGE---GYSIMANPD 200 (237)
T ss_dssp HHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTT---CBCCEECGG
T ss_pred HHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCc---cEEEEEcCC
Confidence 789999999999998877777666655 566522 1 111 226777776
No 106
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=67.31 E-value=76 Score=29.11 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=24.8
Q ss_pred eEeeeeeeceEEEEEecccccc-cCC----------CCCCChHhh
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRK-HNL----------APIEDWKDL 52 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~-~Gl----------~~P~SW~dL 52 (315)
+..+|+..+..+++||++-+.. ..+ -.+++|+|+
T Consensus 96 l~~~pi~~d~lvvvvn~~~~~~~~~Lt~~ql~~If~g~i~~W~d~ 140 (350)
T 1pc3_A 96 LMNIALAISAQQVNYNLPGVSEHLKLNGKVLAAMYQGTIKTWDDP 140 (350)
T ss_dssp EEEEEEEEEEEEEEECCTTCCSCCEECHHHHHHHHHTSCCBTTCH
T ss_pred CEEeeEEeeeEEEEEeCCcccccccCCHHHHHHHhcCccccccch
Confidence 6789999999999999976431 001 146889986
No 107
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=66.05 E-value=14 Score=33.09 Aligned_cols=77 Identities=9% Similarity=-0.016 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCEEEEEEehhhHHHHHHcCC---CeEEEeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHH
Q 036082 88 AHHLKAFGIGDVWVAVGWSSDVLPAVKHMS---NVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEF 164 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~---~i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInf 164 (315)
.+..+.+..+++++++.+++.+..+.- .+ -+..-+ ....-|...+++.++-++.+ ..++|++-
T Consensus 161 aql~r~l~d~~vD~avin~n~a~~agl-~p~~dal~~E~-~~~~py~Nvivvr~~d~d~~------------~ik~lv~a 226 (249)
T 4got_A 161 ELTAKAYENKEGDAVFINVNYAIQNKL-NPKKDAIEVES-TKNNPYANIIAVRKGEEDSA------------KIKALMEV 226 (249)
T ss_dssp TTHHHHHHTTCSSEEEECHHHHHHTTC-CHHHHCSEECC-STTCCCCEEEEEETTCTTSH------------HHHHHHHH
T ss_pred hHhhhhcccccccEEEechhHHHHcCC-ChhhhhhcccC-CCCCceEEEEEEcccccCCH------------HHHHHHHH
Confidence 456678888888888888765544311 11 121211 11234667888888877776 89999999
Q ss_pred HhcHHHHHHHHhhh
Q 036082 165 CLQTARALPFKQEV 178 (315)
Q Consensus 165 llspe~q~~~~~e~ 178 (315)
+-|+|++..+.+.+
T Consensus 227 ~~s~evk~~I~~~y 240 (249)
T 4got_A 227 LHSKKIKDFIEKKY 240 (249)
T ss_dssp HTSHHHHHHHHHHT
T ss_pred HCCHHHHHHHHHHc
Confidence 99999999887654
No 108
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=64.60 E-value=55 Score=26.48 Aligned_cols=106 Identities=13% Similarity=0.027 Sum_probs=57.6
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHHhh-----cHHHHHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQ-----SAHHLKA 93 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~~~-----~~~~~~~ 93 (315)
.++.|+.....+++.+++.- .+++++||-. .+|++....... . .+.+..... +. ..+..++
T Consensus 88 ~~s~p~~~~~~~~~~~~~~~------~~~~~~dL~g----~~i~~~~g~~~~-~--~l~~~~~~~-~~~~~~~~~~~~~~ 153 (234)
T 3h7m_A 88 DFTPPHTIVYHAIFARRDSP------PAAGLEDLRG----RKVALHRDGIMH-E--YLAERGYGK-DLVLTPTPADALRL 153 (234)
T ss_dssp EEEEEEEEEEEEEEEESSSC------CCSSGGGGTT----SCEEEETTSHHH-H--HHHTTTCGG-GEEEESSHHHHHHH
T ss_pred CCCccccccceEEEEECCCC------CCCCHHHhCC----CEEEEEeCchHH-H--HHHhcCCCc-eEEEeCCHHHHHHH
Confidence 46678877777888877642 3688888831 246665432110 0 001100000 00 2467789
Q ss_pred HHcCCEEEEEEehhhHHHHHHcC--CCeEEEeCCCceeeeeeEEEeCC
Q 036082 94 FGIGDVWVAVGWSSDVLPAVKHM--SNVAVVPKSGASLWADLWAIPAA 139 (315)
Q Consensus 94 ~~~Gev~~~~~ws~~~~~~~~~~--~~i~~~PkeG~~~~~d~~~I~k~ 139 (315)
+.+|++++++.+...+....+.. .++...+.. .....-.+++.++
T Consensus 154 l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 200 (234)
T 3h7m_A 154 LAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARS-IAAQRYGYAVRQG 200 (234)
T ss_dssp HHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEE-EEEEEEEEEEETT
T ss_pred HHcCCceEEEeccHHHHHHHHhcCCCceEEeccc-cCCCceEEEEeCC
Confidence 99999999998876665554433 345542211 1111236677776
No 109
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=64.43 E-value=60 Score=27.97 Aligned_cols=104 Identities=14% Similarity=0.128 Sum_probs=59.1
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCC-ceEeecChHHHhhHHHHHHHHH-HHHhh--cHHHHHHHH
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSIAVQLNLA-LLANQ--SAHHLKAFG 95 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~G-ki~~~d~~~~~~g~a~~~~a~~-~L~~~--~~~~~~~~~ 95 (315)
+..||.....+|+.+++. +.+|++|| +| +|++........ .+++. . .+... ..+..++|.
T Consensus 137 ~~~p~~~~~~~l~~~~~~-------~i~s~~dL-----~G~~v~v~~g~~~~~---~l~~~-~~~~~~~~~~~~~~~~l~ 200 (283)
T 2yln_A 137 KSEPYSWSGAVLVAHNDS-------NIKSIADI-----KGVKTAQSLTSNYGE---KAKAA-GAQLVPVDGLAQSLTLIE 200 (283)
T ss_dssp ECSCSEEECEEEEEETTC-------SCCSGGGC-----TTSEEEECTTSHHHH---HHHHT-TCEEEECSSHHHHHHHHH
T ss_pred eccCeeeecEEEEEECCC-------CCCCHHHh-----CCCEEEEecCchHHH---HHHHc-CCeEEEeCCHHHHHHHHH
Confidence 555777777888887753 46788888 34 466554332110 01110 0 00000 246778999
Q ss_pred cCCEEEEEEehhhHHHHHHcCC--CeEEEe-CCCceeeeeeEEEeCC
Q 036082 96 IGDVWVAVGWSSDVLPAVKHMS--NVAVVP-KSGASLWADLWAIPAA 139 (315)
Q Consensus 96 ~Gev~~~~~ws~~~~~~~~~~~--~i~~~P-keG~~~~~d~~~I~k~ 139 (315)
+|++++++.+...+.......+ ++.+.+ ..-.......++++++
T Consensus 201 ~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~ 247 (283)
T 2yln_A 201 QKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKG 247 (283)
T ss_dssp TTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESS
T ss_pred cCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCC
Confidence 9999999998877666554443 355533 2211123346788887
No 110
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=64.25 E-value=64 Score=27.71 Aligned_cols=102 Identities=14% Similarity=-0.024 Sum_probs=60.8
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCC-ceEeecChHHHhhHHHHHHHHHHHHhh-------cHHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSIAVQLNLALLANQ-------SAHH 90 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~G-ki~~~d~~~~~~g~a~~~~a~~~L~~~-------~~~~ 90 (315)
.+..||.....+++.+++. +.+|++||- | +|++........ .+.+. +... ..+.
T Consensus 125 ~~s~p~~~~~~~~~~~~~~-------~i~~~~dL~-----g~~i~~~~g~~~~~---~l~~~---~~~~~~~~~~~~~~~ 186 (292)
T 1xt8_A 125 DFCSPYMKVALGVAVPKDS-------NITSVEDLK-----DKTLLLNKGTTADA---YFTQN---YPNIKTLKYDQNTET 186 (292)
T ss_dssp EECCCCEEEEEEEEEETTC-------CCCSSGGGT-----TSEEEEETTSHHHH---HHHHH---CTTSEEEEESSHHHH
T ss_pred eeeccceecceEEEEECCC-------CCCCHHHhC-----CCEEEEeCCCcHHH---HHHHh---CCCceEEEcCCHHHH
Confidence 4667888888888888764 467888884 4 466554322110 01111 1111 2467
Q ss_pred HHHHHcCCEEEEEEehhhHHHHHHcCCCeEEEeCCCceeeee-eEEEeCC
Q 036082 91 LKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWAD-LWAIPAA 139 (315)
Q Consensus 91 ~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~~PkeG~~~~~d-~~~I~k~ 139 (315)
.+++.+|++++++.+...........+++.+.+..-. .... .++++++
T Consensus 187 ~~~L~~G~vDa~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~k~ 235 (292)
T 1xt8_A 187 FAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG-NKDVIAPAVKKG 235 (292)
T ss_dssp HHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEEEEEE-EEEEECCEEETT
T ss_pred HHHHHcCCccEEEecHHHHHHHHHhCCCeEEcccccc-cCceeEEEEeCC
Confidence 8899999999999988777666666566665321101 1122 5677776
No 111
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=62.84 E-value=71 Score=28.14 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCC--CCCcccccCCCCCCCHHHHHHHHHH
Q 036082 88 AHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAA--SRLETKQIGGRVRGLSPLIHQWIEF 164 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~--s~~~~~~~~~~~~~~~~~A~~FInf 164 (315)
.+...+|.+|++++++.|..........+ .+.+ +...+.....+.+++.+. ..|++ ...+|++-
T Consensus 168 ~~~~~al~~G~vDa~~~~~p~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~------------~~~~~~~a 234 (324)
T 3ksx_A 168 ANARAAFAAGQVDAWAIWDPWYSALTLDG-SARLLANGEGLGLTGGFFLSSRRYATAWGP------------FVQQVMGT 234 (324)
T ss_dssp HHHHHHHHTTCCSEEEEETTHHHHHHHTT-SEEEEEESTTSCCCCEEEEEEHHHHHHTHH------------HHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEccHHHHHHHhcC-CcEEEecccccCCCccEEEECHHHHHHCHH------------HHHHHHHH
Confidence 46778999999999999987776655443 3444 332333323344555443 12555 77888875
Q ss_pred Hhc
Q 036082 165 CLQ 167 (315)
Q Consensus 165 lls 167 (315)
+..
T Consensus 235 ~~~ 237 (324)
T 3ksx_A 235 LNQ 237 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 112
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=62.83 E-value=8.8 Score=34.30 Aligned_cols=37 Identities=5% Similarity=0.066 Sum_probs=29.3
Q ss_pred eeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhcHH-HHHHHHh
Q 036082 128 SLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTA-RALPFKQ 176 (315)
Q Consensus 128 ~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe-~q~~~~~ 176 (315)
..+.-.+++.++.+++. +|.+|++|+.+++ +|..+.+
T Consensus 233 ~~r~~~l~~~~~~~~s~------------aa~~Fi~~l~s~e~gq~i~~~ 270 (294)
T 3cvg_A 233 LLNPAHLLVGARAKNAE------------MAKEFAKWLVSKEGGQKVIEG 270 (294)
T ss_dssp TEEEEEEEEBSSCSSHH------------HHHHHHHHHHSTTTHHHHHHT
T ss_pred eeeEEEEEEeCCCCCHH------------HHHHHHHHHcCcHHHHHHHHH
Confidence 33444667778877776 8999999999999 9988874
No 113
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=60.64 E-value=75 Score=26.67 Aligned_cols=107 Identities=13% Similarity=-0.002 Sum_probs=61.7
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHHh----h-------
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLAN----Q------- 86 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~~----~------- 86 (315)
-.++.||.....+|+.+++. .+++++||-. .+|++.......- .+.+..+.+.. .
T Consensus 98 ~~fs~p~~~~~~~~~~~~~~-------~i~~~~dL~g----~~i~v~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~ 163 (268)
T 3hv1_A 98 ADFTEPYMVNEQVLVTKKSS-------GIDSVAGMAG----KTLGAQAGSSGYD---AFNASPKILKDVVANQKVVQYST 163 (268)
T ss_dssp CEECCCCEEECEEEEEEGGG-------CCCSSGGGTT----CCEEEETTCHHHH---HHHHCTTTTTTTSGGGCEEEESS
T ss_pred CcCcHHHeeCceEEEEECCC-------CCCCHHHhCC----CEEEEEeCCchHH---HHHHhhHHHhhhcccceEEEeCC
Confidence 35677888888899998775 3678888831 2466655432111 11111111110 0
Q ss_pred cHHHHHHHHcCCEEEEEEehhhHHHHHHcCC---CeEEEeCCCceeeeeeEEEeCC
Q 036082 87 SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMS---NVAVVPKSGASLWADLWAIPAA 139 (315)
Q Consensus 87 ~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~---~i~~~PkeG~~~~~d~~~I~k~ 139 (315)
..+..+++.+|++++++.+...+.......+ ++.+.+.... ...-.+++.++
T Consensus 164 ~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~k~ 218 (268)
T 3hv1_A 164 FTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYE-GESFAVGARKV 218 (268)
T ss_dssp HHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSC-CEEECCEECTT
T ss_pred HHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCC-CCcEEEEEcCC
Confidence 2467889999999999998877666555443 3555332211 12235677665
No 114
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=58.71 E-value=93 Score=27.16 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-Ee-CC--------CceeeeeeEEEeCC--CCCcccccCCCCCCCH
Q 036082 88 AHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VP-KS--------GASLWADLWAIPAA--SRLETKQIGGRVRGLS 155 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~P-ke--------G~~~~~d~~~I~k~--s~~~~~~~~~~~~~~~ 155 (315)
.+...+|.+|++++++.|......+...+ ...+ .. .+ |.......+++.++ ..|++
T Consensus 177 ~~~~~al~~G~vDa~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~----------- 244 (346)
T 3qsl_A 177 AGAVTALRSGQIDAISNTDPVVSMLETSG-DIQIIVDTRTLKDTKEIFGGNMPAGCLYAPQAFVDANPN----------- 244 (346)
T ss_dssp HHHHHHHHHTSCSEEEEETTHHHHHHHTT-CEEEEEECSSHHHHHHHHSSCCCCEEEEEEHHHHHHCHH-----------
T ss_pred HHHHHHHHcCCccEEEecchhHHHHHhCC-CeEEEEecccccchhhhcCCCCceEEEEECHHHHHHCHH-----------
Confidence 46789999999999999988776666655 4444 22 11 22233345555554 23666
Q ss_pred HHHHHHHHHHhc
Q 036082 156 PLIHQWIEFCLQ 167 (315)
Q Consensus 156 ~~A~~FInflls 167 (315)
...+|++-+..
T Consensus 245 -~~~~~~~a~~~ 255 (346)
T 3qsl_A 245 -TAQALTNAIVR 255 (346)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 88889885543
No 115
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=57.42 E-value=94 Score=26.89 Aligned_cols=67 Identities=15% Similarity=0.108 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCC--CCCcccccCCCCCCCHHHHHHHHHH
Q 036082 88 AHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAA--SRLETKQIGGRVRGLSPLIHQWIEF 164 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~--s~~~~~~~~~~~~~~~~~A~~FInf 164 (315)
.+...+|.+|++++++.|..........+ .+.+ ....+.......+++.+. ..|++ .+.+|++-
T Consensus 142 ~~~~~al~~G~vDa~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~------------~~~~~~~a 208 (308)
T 2x26_A 142 ADARAAFQQGNVDAWAIWDPYYSAALLQG-GVRVLKDGTDLNQTGSFYLAARPYAEKNGA------------FIQGVLAT 208 (308)
T ss_dssp HHHHHHHHTTSSSEEEEETTHHHHHHHHS-SEEEEEESTTSCCCCEEEEEEHHHHHHTHH------------HHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEecchhHHHHHhcC-CcEEEecCCCcCCcceEEEEcHHHHHHCHH------------HHHHHHHH
Confidence 45678899999999998877665554443 4555 332333222233444432 23565 88888886
Q ss_pred Hhc
Q 036082 165 CLQ 167 (315)
Q Consensus 165 lls 167 (315)
+..
T Consensus 209 l~~ 211 (308)
T 2x26_A 209 FSE 211 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 116
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=56.69 E-value=65 Score=27.98 Aligned_cols=118 Identities=10% Similarity=0.057 Sum_probs=61.9
Q ss_pred eeeeceEEEEEecccccccCCCCCCChHhhcCcccCCc-eEeecChHHHhhHHHHHHHHHHH----Hhh-----cHHHHH
Q 036082 23 PYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGR-ISMVNSPREVIGSIAVQLNLALL----ANQ-----SAHHLK 92 (315)
Q Consensus 23 P~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gk-i~~~d~~~~~~g~a~~~~a~~~L----~~~-----~~~~~~ 92 (315)
++..+..+|+.+++. +++|++|| +|| |++........ + +...++.. .+. +.+...
T Consensus 82 ~~~~~~~~l~~~~~s-------~i~s~~DL-----~Gk~i~~~~~~~~~~-~--~~~~l~~~Gl~~~~v~~~~~~~~~~~ 146 (302)
T 3ix1_A 82 VVRSPLNHVMFLAEQ-------DFDSPADL-----VGLTVGYPGIPVNEP-I--LKTMVEAAGGDYEQVHLMDVGFELGA 146 (302)
T ss_dssp EECSCCEEEEEEGGG-------CCSSGGGG-----TTSEEEECSCTTHHH-H--HHHHHHHTTCCGGGCEEEECTTCHHH
T ss_pred EeccCCEEEEEECCC-------CCCChHHc-----CCCEEEeCCCcchHH-H--HHHHHHHcCCCHHHeEEEecCccHHH
Confidence 443445677777652 57889988 454 55544322111 1 11111110 000 234567
Q ss_pred HHHcCCEEEEEE-e-hhhHHHHHHcCCCeEE-Ee-CCCce-eeeeeEEEeCC--CCCcccccCCCCCCCHHHHHHHHHHH
Q 036082 93 AFGIGDVWVAVG-W-SSDVLPAVKHMSNVAV-VP-KSGAS-LWADLWAIPAA--SRLETKQIGGRVRGLSPLIHQWIEFC 165 (315)
Q Consensus 93 ~~~~Gev~~~~~-w-s~~~~~~~~~~~~i~~-~P-keG~~-~~~d~~~I~k~--s~~~~~~~~~~~~~~~~~A~~FInfl 165 (315)
+|.+|++++++. + ......+...+.++.+ .+ ..|.+ .....+++.++ ..|++ ...+|++-+
T Consensus 147 al~~G~vDa~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~------------~v~~~~~a~ 214 (302)
T 3ix1_A 147 SIVSGRADAVVGTYINHEYPVLKHEGHDISYFNPVDYGVPEYDELVLISNEAYVEESGE------------VLAAFWRAA 214 (302)
T ss_dssp HHHHSSSSEEEEEETTTHHHHHHHTTCCEEEECGGGTTCCCCCSEEEEEEHHHHHHCHH------------HHHHHHHHH
T ss_pred HHhCCCCCEEEEeeecchHHHHHhcCCCceEeCHHHcCCCCCcccEEEECHHHHHHCHH------------HHHHHHHHH
Confidence 888999998774 3 3344455556666665 32 33442 33345555554 23565 788887755
Q ss_pred hc
Q 036082 166 LQ 167 (315)
Q Consensus 166 ls 167 (315)
..
T Consensus 215 ~~ 216 (302)
T 3ix1_A 215 LK 216 (302)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 117
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=56.34 E-value=98 Score=26.67 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=62.2
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcC--c-ccC-C-ceEeec-ChHHHhhHH-HHHHHHHHHHh----hc
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWR--P-ELA-G-RISMVN-SPREVIGSI-AVQLNLALLAN----QS 87 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~d--p-~~~-G-ki~~~d-~~~~~~g~a-~~~~a~~~L~~----~~ 87 (315)
.++.||.....+|+++++. +.++|+||-- + .++ | +|++.. +.... .+. .+......+.. ..
T Consensus 124 ~fs~p~~~~~~~~~~~~~~-------~~~~~~dl~~~~~~~l~~~~~vg~v~~~s~~~-~l~~~~~~~~~~i~~~~~~~~ 195 (284)
T 2a5s_A 124 DFSVPFVETGISVMVSRGT-------QVTGLSDKKFQRPHDYSPPFRFGTVPNGSTER-NIRNNYPYMHQYMTRFNQRGV 195 (284)
T ss_dssp EECCCCEEECEEEEEETTC-------CCCSTTSHHHHSGGGSSSCCCEECCTTSHHHH-HHHTTCHHHHHHHGGGCCSSH
T ss_pred EeccCchhcCEEEEEECCc-------ccccccccccCChhHcCCCceEEEEeCCchHH-HHHHHHHHHHHHHHhccCCCH
Confidence 4678998888888888753 4567777642 1 233 3 566442 22211 111 11111111221 13
Q ss_pred HHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--EeCCCcee--eeeeEEEeCCCCC
Q 036082 88 AHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--VPKSGASL--WADLWAIPAASRL 142 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~PkeG~~~--~~d~~~I~k~s~~ 142 (315)
.+..+++.+|++++.+.....+....++.+...+ +. .+.++ ..-+++++|+++-
T Consensus 196 ~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~a~~k~~~l 253 (284)
T 2a5s_A 196 EDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIG-SGYIFATTGYGIALQKGSPW 253 (284)
T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEE-CCCGGGCEEECCEEETTCTT
T ss_pred HHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCCEEEeC-CccccccCceEEEecCCCHH
Confidence 4678899999999888876666555555444344 31 01111 2236788998643
No 118
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=55.49 E-value=1e+02 Score=26.68 Aligned_cols=116 Identities=9% Similarity=-0.052 Sum_probs=62.0
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCc-ccCC-ceEeecChHHHhhHH-HHHHHHHHHHhh----cHHHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP-ELAG-RISMVNSPREVIGSI-AVQLNLALLANQ----SAHHL 91 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp-~~~G-ki~~~d~~~~~~g~a-~~~~a~~~L~~~----~~~~~ 91 (315)
.|+.||.....+|+++++.- ..++++||-.. ...| +|++.........+. .+......+... ..+..
T Consensus 135 ~fs~P~~~~~~~i~~~~~~~------~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~~~~~~~~i~~~~~~~~~~~~ 208 (294)
T 2rc8_A 135 DFTSPFFSTSLGILVRTRGT------ELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGV 208 (294)
T ss_dssp EECSCSEEEEEEEEEETTSC------CCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHH
T ss_pred EEccchHhcceEEEEECCCC------CcCChhhhhhcCcccCeEEEEEcCChHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 47789988888999987631 45778777521 1223 566554322111111 111111112111 34677
Q ss_pred HHHHc--CCEEEEEEehhhHHHHHHcCC--CeEEEeCCCceeeeeeEEEeCCCC
Q 036082 92 KAFGI--GDVWVAVGWSSDVLPAVKHMS--NVAVVPKSGASLWADLWAIPAASR 141 (315)
Q Consensus 92 ~~~~~--Gev~~~~~ws~~~~~~~~~~~--~i~~~PkeG~~~~~d~~~I~k~s~ 141 (315)
+++.+ |++++.+.....+.......+ ++.+++. -.....-+++++|+++
T Consensus 209 ~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ia~~k~~~ 261 (294)
T 2rc8_A 209 QYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGK-PFAIEGYGIGLPPNSP 261 (294)
T ss_dssp HHHHSSSCCCSEEEEEHHHHHHHHHTCSSSCEEECSC-CEEEEEECCEECTTCT
T ss_pred HHHHhccCceeEEEecHHHHHHHHhhCCCCCEEEcCC-cccccceEEEecCCCH
Confidence 88899 999998887766655555433 3433321 1111223678888764
No 119
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=51.11 E-value=1.2e+02 Score=26.30 Aligned_cols=134 Identities=13% Similarity=0.051 Sum_probs=68.9
Q ss_pred eEeeeeeeceEEEEEecccccccC------------------CCCCCChHhhcCcccCC-ceEee-cChHH-HhhH---H
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHN------------------LAPIEDWKDLWRPELAG-RISMV-NSPRE-VIGS---I 74 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~G------------------l~~P~SW~dL~dp~~~G-ki~~~-d~~~~-~~g~---a 74 (315)
.|+.||.....+|+++++.-...+ ...+.|++||... .+ +|++. +.... .+.- .
T Consensus 110 ~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~p~tv~~~~~~i~~~~dL~g~--~~~~vg~v~~~~~~~~l~~~~~~ 187 (312)
T 1yae_A 110 DFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPRGSERMESPIDSADDLAKQ--TKIEYGAVEDGATMTFFKKSKIS 187 (312)
T ss_dssp EEEEEEEEECEEEEEEC----------------------------CCSHHHHHTC--SSSEEECBTTSHHHHHHHHCCBH
T ss_pred EecceeeecceEEEEeCCccccccceeeecccccCCcccccccCCCCCHHHHhhc--cCceEEEEeCChHHHHHHhccCc
Confidence 467899988889999886410000 0146788888532 11 46643 32221 1100 0
Q ss_pred HHHHHHHHH------Hhh--cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEEEeCCCceeeeeeEEEeCCCCCcccc
Q 036082 75 AVQLNLALL------ANQ--SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLETKQ 146 (315)
Q Consensus 75 ~~~~a~~~L------~~~--~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~~PkeG~~~~~d~~~I~k~s~~~~~~ 146 (315)
.+...+..+ ... ..+..+++.+|+ ++.+.....+....+...++.+++.. .....-+++++|+++-.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-Da~i~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~a~~k~~~l~~-- 263 (312)
T 1yae_A 188 TYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQIGGL-IDSKGYGVGTPMGSPYRD-- 263 (312)
T ss_dssp HHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-EEEEEEHHHHHHHHTTCTTEEEESSC-SSCEEEEEEEETTCSSHH--
T ss_pred hHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-cEEEeccHHHHHHHhcCCCEEEeccc-ccccceEEEEeCCCCcHH--
Confidence 111111111 111 346778899999 88887665555555555666654321 111234788999876433
Q ss_pred cCCCCCCCHHHHHHHHHHHhcH
Q 036082 147 IGGRVRGLSPLIHQWIEFCLQT 168 (315)
Q Consensus 147 ~~~~~~~~~~~A~~FInfllsp 168 (315)
.-.+.|.-|...
T Consensus 264 ----------~in~~l~~l~~~ 275 (312)
T 1yae_A 264 ----------KITIAILQLQEE 275 (312)
T ss_dssp ----------HHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHc
Confidence 455556555543
No 120
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=49.80 E-value=1.2e+02 Score=25.71 Aligned_cols=107 Identities=12% Similarity=-0.006 Sum_probs=61.4
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHH-hh-------cHH
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLA-NQ-------SAH 89 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~-~~-------~~~ 89 (315)
-.|+.||.....+|+++++. +++|++||-. .+|++........ .+........ .. ..+
T Consensus 101 ~~~s~p~~~~~~~l~~~~~~-------~i~sl~dL~g----~~v~~~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~ 166 (287)
T 2vha_A 101 AAFSDTIFVVGTRLLTKKGG-------DIKDFADLKG----KAVVVTSGTTSEV---LLNKLNEEQKMNMRIISAKDHGD 166 (287)
T ss_dssp CEEEEEEEEEEEEEEEETTS-------SCCSGGGGTT----CEEEEETTSHHHH---HHHHHHHHTTCCCEEEEESSHHH
T ss_pred ccccceeeecceEEEEECCC-------CCCCHHHcCC----CEEEEeCCCcHHH---HHHHHhhccCCCceEEEcCCHHH
Confidence 45778988888889998872 4688998842 2466553322111 1111111000 11 346
Q ss_pred HHHHHHcCCEEEEEEehhhHHHHHHcCC---CeEEEeCCCceeeeeeEEEeCC
Q 036082 90 HLKAFGIGDVWVAVGWSSDVLPAVKHMS---NVAVVPKSGASLWADLWAIPAA 139 (315)
Q Consensus 90 ~~~~~~~Gev~~~~~ws~~~~~~~~~~~---~i~~~PkeG~~~~~d~~~I~k~ 139 (315)
..++|.+|++++++.....+.......+ .+.+.+..- ....-.++++++
T Consensus 167 ~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ 218 (287)
T 2vha_A 167 SFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQ-SQEAYGCMLRKD 218 (287)
T ss_dssp HHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCS-CEEEEEEEECTT
T ss_pred HHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCcc-ccCceEEEEeCC
Confidence 7889999999999988776666655432 344433211 122336778876
No 121
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=49.70 E-value=1.1e+02 Score=25.48 Aligned_cols=107 Identities=10% Similarity=-0.006 Sum_probs=61.1
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHH-----Hhh-----cH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALL-----ANQ-----SA 88 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L-----~~~-----~~ 88 (315)
.|+.||.....+++++++.- ..+++++||-. .+|++..+....- .+.+.+..- .+. ..
T Consensus 107 ~fs~p~~~~~~~~~~~~~~~-----~~i~~~~dL~g----~~v~v~~g~~~~~---~l~~~~~~~g~~~~~~~~~~~~~~ 174 (259)
T 4dz1_A 107 DFSEPYYINSFYLVSMANHK-----ITLNNLNELNK----YSIGYPRGMAYSD---LIKNDLEPKGYYSLSKVKLYPTYN 174 (259)
T ss_dssp EECCCSEEEEEEEEEETTSC-----CCCCSGGGGGG----SCEEEETTSTHHH---HHHHHTGGGTSCCGGGCEEESSHH
T ss_pred ccccchhhCceEEEEEcCCC-----CCCCCHHHhCC----CEEEEeCCcHHHH---HHHHhcccccccccceeEecCCHH
Confidence 35678888888888877642 15788998842 2566654322110 111111110 111 34
Q ss_pred HHHHHHHcCCEEEEEEehhhHHHHHH-cCCCeEE--EeCCCceeeeeeEEEeCCC
Q 036082 89 HHLKAFGIGDVWVAVGWSSDVLPAVK-HMSNVAV--VPKSGASLWADLWAIPAAS 140 (315)
Q Consensus 89 ~~~~~~~~Gev~~~~~ws~~~~~~~~-~~~~i~~--~PkeG~~~~~d~~~I~k~s 140 (315)
+..+++.+|++++++.....+..... .+.++.. .+.. ...-.++++|+.
T Consensus 175 ~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~k~~ 226 (259)
T 4dz1_A 175 ETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKN---VDQLGIAFKKGS 226 (259)
T ss_dssp HHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEE---EEEEEEEEETTC
T ss_pred HHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeecccCC---CceEEEEEeCCh
Confidence 67889999999999988776544433 4455554 2211 122377888875
No 122
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=49.58 E-value=62 Score=29.31 Aligned_cols=75 Identities=13% Similarity=0.012 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEEEeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhc
Q 036082 88 AHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQ 167 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInflls 167 (315)
.+..+.| +++++++.++..+..+--. +.-.++ ++-..-+...+++-++-++.+ ..++|++-+-|
T Consensus 178 aql~r~l--~dvD~avIn~nya~~agl~-~~dal~-E~~~~~y~Nvivvr~~d~d~~------------~ik~lv~a~~S 241 (275)
T 3gxa_A 178 AQLPRSR--ADVDFAVVNGNYAISSGMK-LTEALF-QEPSFAYVNWSAVKTADKDSQ------------WLKDVTEAYNS 241 (275)
T ss_dssp GGHHHHT--TTSSEEEECHHHHHHTTCC-GGGCSE-ECCCCTTCCEEEEEGGGTTCH------------HHHHHHHHTTS
T ss_pred HHHhhhc--cccCEEEEchhHHHHcCCC-ccccee-cCCCCCcEEEEEEeccccCCH------------HHHHHHHHHcC
Confidence 3455555 5677788876655443211 110113 222234566788888877776 89999999999
Q ss_pred HHHHHHHHhhh
Q 036082 168 TARALPFKQEV 178 (315)
Q Consensus 168 pe~q~~~~~e~ 178 (315)
+|++..+.+.+
T Consensus 242 ~evk~~i~~~y 252 (275)
T 3gxa_A 242 DAFKAYAHKRF 252 (275)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHc
Confidence 99999888654
No 123
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=48.73 E-value=1e+02 Score=24.70 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=53.3
Q ss_pred CeEeeeeeec-eEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHHhh-----cHHHH
Q 036082 18 KICAAPYRWG-TVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQ-----SAHHL 91 (315)
Q Consensus 18 ~~Y~vP~~~g-~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~~~-----~~~~~ 91 (315)
-.+..|+... ..+|+.+++. +++++||-. .+|++.......- .+.+.+..+ +. ..+..
T Consensus 83 ~~~s~p~~~~~~~~~~~~~~~--------~~~~~dL~g----~~v~~~~g~~~~~---~l~~~~~~~-~~~~~~~~~~~~ 146 (229)
T 2y7i_A 83 VSFSQPYYEGLSAVVVTRKGA--------YHTFADLKG----KKVGLENGTTHQR---YLQDKQQAI-TPVAYDSYLNAF 146 (229)
T ss_dssp SEECSCSBCCCCEEEEEETTS--------CCSTGGGTT----CEEEEETTSHHHH---HHHHHCTTS-EEEEESCHHHHH
T ss_pred eeeccccccCCcEEEEEeCCC--------CCCHHHHCC----CEEEEecCCcHHH---HHHHhCCCC-eEEecCCHHHHH
Confidence 3466788877 7888888764 467788731 2466654332110 011110000 00 24678
Q ss_pred HHHHcCCEEEEEEehhhHHHHHHcCCCeEE
Q 036082 92 KAFGIGDVWVAVGWSSDVLPAVKHMSNVAV 121 (315)
Q Consensus 92 ~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~ 121 (315)
+++.+|++++++.+...+....+..+++.+
T Consensus 147 ~~l~~grvDa~~~~~~~~~~~~~~~~~~~~ 176 (229)
T 2y7i_A 147 TDLKNNRLEGVFGDVAAIGKWLKNNPDYAI 176 (229)
T ss_dssp HHHHTTSCSEEEEEHHHHHHHHTTCTTEEE
T ss_pred HHHHcCCcCEEEechHHHHHHHHhCCCeEE
Confidence 899999999999988777666665556666
No 124
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=46.87 E-value=1.2e+02 Score=24.87 Aligned_cols=98 Identities=12% Similarity=-0.009 Sum_probs=56.2
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHHhh-------cHHH
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQ-------SAHH 90 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~~~-------~~~~ 90 (315)
-.|+.||.....+++++++. ++|| +|+|++....... ..+... .. ..+.
T Consensus 82 ~~fs~p~~~~~~~~~~~~~~-----------~~dL-----~g~igv~~g~~~~-------~~l~~~-~~~~~~~~~~~~~ 137 (232)
T 3i6v_A 82 IDFTQNYIPPTASSYVATSD-----------GADL-----SGIVAAQTATIQA-------GYIAES-GATLVEFATPEET 137 (232)
T ss_dssp SEEEEEEECCCEEEEEESST-----------TCCT-----TSEEEEETTSHHH-------HHHHHS-SSEEEEESSHHHH
T ss_pred cCcccccccCCeEEEEECCC-----------hHHh-----CCCEEEecCchHH-------HHHHhc-CCeEEEeCCHHHH
Confidence 35788988888888887765 2333 4567665543211 111111 11 3467
Q ss_pred HHHHHcCCEEEEEEehhhHHHHHHcC-CCeEEEeCCCceeeeeeEEEeCC
Q 036082 91 LKAFGIGDVWVAVGWSSDVLPAVKHM-SNVAVVPKSGASLWADLWAIPAA 139 (315)
Q Consensus 91 ~~~~~~Gev~~~~~ws~~~~~~~~~~-~~i~~~PkeG~~~~~d~~~I~k~ 139 (315)
.++|.+|++++.+.+...+....++. .++.+.+..-.....-.++++|+
T Consensus 138 ~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 187 (232)
T 3i6v_A 138 IAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRES 187 (232)
T ss_dssp HHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTT
T ss_pred HHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCC
Confidence 78999999999999877766555443 56666221000011226777765
No 125
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=46.29 E-value=15 Score=32.83 Aligned_cols=77 Identities=8% Similarity=-0.029 Sum_probs=54.1
Q ss_pred cHHHHHHHHcCCEEEEEEehhhHHHHHHcCC---CeEEEeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHH
Q 036082 87 SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMS---NVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIE 163 (315)
Q Consensus 87 ~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~---~i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FIn 163 (315)
..+..+.|.+|++++++.+++.+..+- -.+ .|-+-+. ..-+...+++-++-++.+ ..++|++
T Consensus 158 aaql~~al~dg~vDaavin~n~a~~ag-l~p~~dal~~E~~--~~~y~n~i~vr~~~~~~~------------~~k~lv~ 222 (246)
T 4ef1_A 158 PAIMTTLYDNEEGAAVLINSNFAVDQG-LNPKKDAIALEKE--SSPYANIIAVRKEDENNE------------NVKKLVK 222 (246)
T ss_dssp GGGHHHHHHTTCSSEEEECHHHHHHTT-CCHHHHCSEECSC--CGGGCEEEEEEGGGTTCH------------HHHHHHH
T ss_pred HHHHHHHhccccccEEEEechHHHHcC-CCCccCceEEcCC--CCCeEEEEEEeccccCCH------------HHHHHHH
Confidence 456778899999999999876554431 111 1222111 234667888888877776 8999999
Q ss_pred HHhcHHHHHHHHhhh
Q 036082 164 FCLQTARALPFKQEV 178 (315)
Q Consensus 164 fllspe~q~~~~~e~ 178 (315)
-+-|+|++..+.+++
T Consensus 223 ~~~s~~v~~~i~~~~ 237 (246)
T 4ef1_A 223 VLRSKEVQDWITKKW 237 (246)
T ss_dssp HHHSHHHHHHHHHHT
T ss_pred HHcCHHHHHHHHHHc
Confidence 999999999887644
No 126
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=44.65 E-value=1.3e+02 Score=24.79 Aligned_cols=112 Identities=19% Similarity=0.132 Sum_probs=60.7
Q ss_pred CeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCC-ceEeecChHHHhhHHHHHHH-HHH--HHhh--cHHHH
Q 036082 18 KICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSIAVQLN-LAL--LANQ--SAHHL 91 (315)
Q Consensus 18 ~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~G-ki~~~d~~~~~~g~a~~~~a-~~~--L~~~--~~~~~ 91 (315)
-.|..||.....+++++++.-. .+++++||-.. .| +|++....... . .+.+. +.. +... ..+..
T Consensus 90 ~~~s~p~~~~~~~~~~~~~~~~-----~i~~~~dL~~~--~g~~i~~~~g~~~~-~--~l~~~~~~~~~~~~~~~~~~~~ 159 (257)
T 2q88_A 90 VAYSQPILCDAEAFALKKGNPL-----GLKSYKDIADN--PDAKIGAPGGGTEE-K--LALEAGVPRDRVIVVPDGQSGL 159 (257)
T ss_dssp SEECSCCCEECEEEEEETTCTT-----CCCBHHHHHHC--TTCCEEECTTSHHH-H--HHHHTTCCGGGEEECSSHHHHH
T ss_pred cccccchhcCceEEEEECCCcc-----CCCCHHHHhcc--CCceEEEECCcccH-H--HHHhcCCCCceEEEcCCHHHHH
Confidence 3467788888888888877411 36899998521 13 46665432211 0 01110 000 0000 34678
Q ss_pred HHHHcCCEEEEEEehhhHHHHHHcCC--CeEE-EeCCCceeeeeeEEEeCC
Q 036082 92 KAFGIGDVWVAVGWSSDVLPAVKHMS--NVAV-VPKSGASLWADLWAIPAA 139 (315)
Q Consensus 92 ~~~~~Gev~~~~~ws~~~~~~~~~~~--~i~~-~PkeG~~~~~d~~~I~k~ 139 (315)
++|.+|++++++.+...+....+..+ .+.. .|-...+...-.++++++
T Consensus 160 ~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 210 (257)
T 2q88_A 160 KMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKG 210 (257)
T ss_dssp HHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGG
T ss_pred HHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCC
Confidence 89999999999988776655544332 3444 332222222235577775
No 127
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=43.75 E-value=1.8e+02 Score=26.16 Aligned_cols=151 Identities=14% Similarity=0.059 Sum_probs=78.0
Q ss_pred CCCCcCCCCCeEeee-eeeceEEEEEecccccccCCCCCCChHhhcCc--ccCCceEeecCh-HHH--hhHHHHHHHHHH
Q 036082 9 DAGEIDPRGKICAAP-YRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELAGRISMVNSP-REV--IGSIAVQLNLAL 82 (315)
Q Consensus 9 ~~~~~DpdG~~Y~vP-~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~Gki~~~d~~-~~~--~g~a~~~~a~~~ 82 (315)
....|||....-.|. +......|+.+++. +.+|++||.+- +-.|++++-... ... +....+.+....
T Consensus 92 ~~~~yd~~~df~pv~~~~~~~~~lvv~~ds-------~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi 164 (312)
T 2f5x_A 92 KNPGYEPYTSFEPIGLVVDVPMTIIARGDF-------PPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGV 164 (312)
T ss_dssp SCCSSCTTTSEEEEEEEEEEEEEEEECTTC-------SCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccccceeeecccCcEEEEEeCCC-------CCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCC
Confidence 445677633322222 22334566776652 67899999852 223566554321 111 111111111100
Q ss_pred -HH----hhcHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--E------------e--CC-Cce----eeeeeEEE
Q 036082 83 -LA----NQSAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--V------------P--KS-GAS----LWADLWAI 136 (315)
Q Consensus 83 -L~----~~~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~------------P--ke-G~~----~~~d~~~I 136 (315)
+. +.+.+....|..|++++++...+.+....+.+ +++. + | .| |.+ ....++++
T Consensus 165 ~~~~Vpy~G~~~a~~aL~~G~VD~~~~~~~~~~~~i~~g-~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~a 243 (312)
T 2f5x_A 165 NLLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITSG-KVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWA 243 (312)
T ss_dssp CCEEEECSSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTT-SSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEE
T ss_pred CeEEeccCChHHHHHHHHcCCccEEEechHHHHHHHHcC-CeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEE
Confidence 00 01457889999999999998877766665543 3332 1 1 11 210 11246788
Q ss_pred eCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 137 PAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 137 ~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
|++.+..- -..+...|.+-+-+|+.+..+.+
T Consensus 244 p~g~p~~v---------v~~l~~al~~~~~~p~~~~~~~~ 274 (312)
T 2f5x_A 244 PKGTPKPV---------VDKLVKSLQAGLADPKFQERMKQ 274 (312)
T ss_dssp ETTCCHHH---------HHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCCHHH---------HHHHHHHHHHHHcCHHHHHHHHH
Confidence 98876421 00144455566677888887763
No 128
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=42.39 E-value=1.4e+02 Score=24.27 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=60.8
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCC-ceEeecChHHHhhHHHHHHHHHHHHh----------hc
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSIAVQLNLALLAN----------QS 87 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~G-ki~~~d~~~~~~g~a~~~~a~~~L~~----------~~ 87 (315)
.++.||.....+++.+++. .++++++||- | +|++........ .+......... ..
T Consensus 86 ~~s~p~~~~~~~~~~~~~~------~~i~~~~dL~-----g~~i~~~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~ 151 (246)
T 4eq9_A 86 LYAAPIAQNPNVLVVKKDD------SSIKSLDDIG-----GKSTEVVQATTSAK---QLEAYNAEHTDNPTILNYTKADF 151 (246)
T ss_dssp EECCCCEECCEEEEEETTC------CSCSSGGGCT-----TCEEEECTTCHHHH---HHHHHHHHCTTSCCEEEECCCCH
T ss_pred eeccceecCceEEEEECCC------CCCCCHHHhC-----CCEEEEecCccHHH---HHHHHHhhCCCcceEEEecCCCH
Confidence 4677888888899988732 1568888884 4 466554322111 11111111110 02
Q ss_pred HHHHHHHHcCCEEEEEEehhhHHHHHHcC--CCeEEEeCCCceeeeeeEEEeCCC
Q 036082 88 AHHLKAFGIGDVWVAVGWSSDVLPAVKHM--SNVAVVPKSGASLWADLWAIPAAS 140 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~~~~~~~~~~--~~i~~~PkeG~~~~~d~~~I~k~s 140 (315)
.+..++|.+|++++++.....+....++. .++.+.+......-.-.++++++.
T Consensus 152 ~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 206 (246)
T 4eq9_A 152 QQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQGQ 206 (246)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETTC
T ss_pred HHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCCC
Confidence 46788999999999998877766555433 356662221111112356777764
No 129
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=42.17 E-value=13 Score=22.56 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcH
Q 036082 157 LIHQWIEFCLQT 168 (315)
Q Consensus 157 ~A~~FInfllsp 168 (315)
+|++||+||++.
T Consensus 10 aakdFv~WL~ng 21 (31)
T 3c5t_B 10 AVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 899999999974
No 130
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=41.70 E-value=1.3e+02 Score=23.87 Aligned_cols=103 Identities=13% Similarity=0.048 Sum_probs=58.6
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHH-Hhh-------cHHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALL-ANQ-------SAHH 90 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L-~~~-------~~~~ 90 (315)
.|..|+.....+++.+++.- .++|++||-. .+|++....... ..+... ... ..+.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~------~i~~~~dL~g----~~i~~~~g~~~~-------~~l~~~~~~~~~~~~~~~~~~ 142 (226)
T 1wdn_A 80 DFSDGYYKSGLLVMVKANNN------DVKSVKDLDG----KVVAVKSGTGSV-------DYAKANIKTKDLRQFPNIDNA 142 (226)
T ss_dssp EECSCCEEEEEEEEEETTCC------SCSSSTTTTT----CEEEEETTSHHH-------HHHHHHCCCSEEEEESSHHHH
T ss_pred ccccchhcCceEEEEeCCCC------CCCCHHHhCC----CEEEEEcCCcHH-------HHHHHhCCCceEEEeCCHHHH
Confidence 45668887788888887631 3678888732 246665432210 111111 111 2467
Q ss_pred HHHHHcCCEEEEEEehhhHHHHHHcCC--CeEEEeCCCceeeeeeEEEeCC
Q 036082 91 LKAFGIGDVWVAVGWSSDVLPAVKHMS--NVAVVPKSGASLWADLWAIPAA 139 (315)
Q Consensus 91 ~~~~~~Gev~~~~~ws~~~~~~~~~~~--~i~~~PkeG~~~~~d~~~I~k~ 139 (315)
.+++.+|++++++.+...........+ ++.+.+.. .....-.++++++
T Consensus 143 ~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~k~ 192 (226)
T 1wdn_A 143 YMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDS-LEAQQYGIAFPKG 192 (226)
T ss_dssp HHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEE-EEEEEEEEEECTT
T ss_pred HHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCC-cccCceEEEEeCC
Confidence 788999999999988776666555543 45553211 1112236677776
No 131
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=41.52 E-value=1.6e+02 Score=24.73 Aligned_cols=135 Identities=15% Similarity=0.072 Sum_probs=73.8
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHHhh-----cHHHHHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQ-----SAHHLKA 93 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~~~-----~~~~~~~ 93 (315)
.+..||.....+|+.+++. ++++++||-. .+|++....... . .+.+.+..-.+. ..+..++
T Consensus 119 ~~s~p~~~~~~~l~~~~~~-------~i~~~~dL~g----~~i~~~~g~~~~-~--~l~~~~~~~~~i~~~~~~~~~~~~ 184 (272)
T 2pvu_A 119 DFSDPYFEATQVILVKQGS-------PVKNALDLKG----KTIGVQNATTGQ-E--AAEKLFGKGPHIKKFETTVVAIME 184 (272)
T ss_dssp EECSCCEEECEEEEEETTC-------CCCSGGGGTT----SCEEEETTSHHH-H--HHHHHHCSSTTEEEESSHHHHHHH
T ss_pred ccchhhhccceEEEEECCC-------CCCCHHHhCC----CeEEEEcCchHH-H--HHHHhcCCCCeEEEcCCHHHHHHH
Confidence 4567888778888888753 4688988842 246665432211 0 111111100000 3467889
Q ss_pred HHcCCEEEEEEehhhHHHHHHcCC--CeEEEeCCC-ceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHHHhc-HH
Q 036082 94 FGIGDVWVAVGWSSDVLPAVKHMS--NVAVVPKSG-ASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQ-TA 169 (315)
Q Consensus 94 ~~~Gev~~~~~ws~~~~~~~~~~~--~i~~~PkeG-~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInflls-pe 169 (315)
+.+|++++++.....+....+..+ ++.+++... .....-.++++++ + + ..+.-.++|.-+.. ++
T Consensus 185 l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~-~--~---------l~~~l~~~l~~l~~~g~ 252 (272)
T 2pvu_A 185 LLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKN-S--E---------LKAKVDEALKNVINSGK 252 (272)
T ss_dssp HHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETT-C--T---------THHHHHHHHHHHHHTTH
T ss_pred HHcCCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCC-H--H---------HHHHHHHHHHHHHhCCh
Confidence 999999999988777666555443 355543222 1223346788888 2 2 11244555555544 35
Q ss_pred HHHHHHhhhCC
Q 036082 170 RALPFKQEVIP 180 (315)
Q Consensus 170 ~q~~~~~e~~~ 180 (315)
.+..+. .+.+
T Consensus 253 ~~~i~~-k~~~ 262 (272)
T 2pvu_A 253 YTEIYK-KWFG 262 (272)
T ss_dssp HHHHHH-HHHS
T ss_pred HHHHHH-HHcC
Confidence 555554 3433
No 132
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=41.00 E-value=1.3e+02 Score=23.81 Aligned_cols=110 Identities=15% Similarity=0.030 Sum_probs=61.8
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCC-ceEeecChHHHhhHHHHHHHHHHHHhh-----cHHHHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSIAVQLNLALLANQ-----SAHHLK 92 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~G-ki~~~d~~~~~~g~a~~~~a~~~L~~~-----~~~~~~ 92 (315)
.++.||.....+++.+++.- ..++++|| +| +|++.......- .+.+....-.+. ..+..+
T Consensus 80 ~~s~p~~~~~~~l~~~~~~~------~~~~~~dL-----~g~~v~~~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~ 145 (227)
T 3tql_A 80 DFTDPYYTNSVSFIADKNTP------LTLSKQGL-----KGKIIGVQGGTTFDS---YLQDSFGNSITIQRYPSEEDALM 145 (227)
T ss_dssp EECSCSBCCEEEEEEETTSC------CCCSTTTT-----TTCEEEEETTSHHHH---HHHHHHGGGSEEEEESSHHHHHH
T ss_pred ecccceeccceEEEEeCCCC------CCCCHHHh-----CCCEEEEEecccHHH---HHHHhccccceEEEcCCHHHHHH
Confidence 46678888888888887742 23688887 34 466654332110 011111100111 346788
Q ss_pred HHHcCCEEEEEEehhhHHHHHHcCCC--eEE-E-eCCCcee--eeeeEEEeCCCCCcc
Q 036082 93 AFGIGDVWVAVGWSSDVLPAVKHMSN--VAV-V-PKSGASL--WADLWAIPAASRLET 144 (315)
Q Consensus 93 ~~~~Gev~~~~~ws~~~~~~~~~~~~--i~~-~-PkeG~~~--~~d~~~I~k~s~~~~ 144 (315)
+|.+|++++++.+...+....+..+. +.+ . +-..... ..-.++++++ +++
T Consensus 146 ~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 201 (227)
T 3tql_A 146 DLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKG--NQA 201 (227)
T ss_dssp HHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETT--CHH
T ss_pred HHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCC--CHH
Confidence 99999999999887776665554433 655 2 2222221 1236778877 444
No 133
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=40.96 E-value=36 Score=25.82 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=39.9
Q ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHhh---ccchhhhcccccchhhhhhhhhHHHhhhh
Q 036082 254 VKEASAALYI-TGCTEMAEVLEVLRET---KDECLFEQSCCQSCRVREERSRRECHRFL 308 (315)
Q Consensus 254 ~~~~~a~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (315)
..+|+..++. .+.++|.+.|+-|-+. +-||+.|.+|-+.=.-.=..++.-|++|.
T Consensus 13 LeeAsr~~f~~~n~~~m~~~L~pLh~~l~~~peT~~E~sF~~~fG~~L~~A~~~~~~y~ 71 (94)
T 3fap_B 13 LEEASRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYM 71 (94)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456555544 5889999998888776 45899998888766555566777787765
No 134
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=39.16 E-value=1.7e+02 Score=24.55 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=56.7
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCC-ceEeecChHHHhhHHHHHHHHHHHH-hh-----cHHH-
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSIAVQLNLALLA-NQ-----SAHH- 90 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~G-ki~~~d~~~~~~g~a~~~~a~~~L~-~~-----~~~~- 90 (315)
.++.||.....+|+++++.-. .+++++|| +| +|++....... ..++.+. +. ..+.
T Consensus 102 ~fs~p~~~~~~~l~~~~~~~~-----~i~~~~dL-----~g~~i~v~~g~~~~-------~~l~~~~~~~~~~~~~~~~~ 164 (271)
T 2iee_A 102 AFSTPYKYSYGTAIVRKDDLS-----GIKTLKDL-----KGKKAAGAATTVYM-------EVARKYGAKEVIYDNATNEQ 164 (271)
T ss_dssp EECCCSEEEEEEEEECTTTGG-----GCSSGGGG-----TTCEEESCTTSHHH-------HHHHHTTCEEEECSSCCHHH
T ss_pred EEeecceeCCeEEEEECCCCC-----CCCCHHHh-----CCCEEEEeCCccHH-------HHHHHcCCceEEeCChhhHH
Confidence 467788888889999887421 36788888 34 46654432111 1111110 11 2355
Q ss_pred -HHHHHcCCEEEEEEehhhHHHHHH-cCC--CeEEEeCCCceeeeeeEEEeCC
Q 036082 91 -LKAFGIGDVWVAVGWSSDVLPAVK-HMS--NVAVVPKSGASLWADLWAIPAA 139 (315)
Q Consensus 91 -~~~~~~Gev~~~~~ws~~~~~~~~-~~~--~i~~~PkeG~~~~~d~~~I~k~ 139 (315)
.++|.+|+++ ++.....+..... ..+ ++.+++........-.++++++
T Consensus 165 l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 216 (271)
T 2iee_A 165 YLKDVANGRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKS 216 (271)
T ss_dssp HHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETT
T ss_pred HHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcCC
Confidence 8999999999 7776655544333 333 3444321111122335778877
No 135
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=34.11 E-value=2.3e+02 Score=24.43 Aligned_cols=118 Identities=9% Similarity=0.001 Sum_probs=61.5
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccC-Cc-eEeecC-hHHHhhHH--HHHHHHHHHHhh----cHH
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELA-GR-ISMVNS-PREVIGSI--AVQLNLALLANQ----SAH 89 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~-Gk-i~~~d~-~~~~~g~a--~~~~a~~~L~~~----~~~ 89 (315)
.++.||.....+|+++++. +.++++||-..... .. ++.... ..+.+-.. .+......+... ..+
T Consensus 136 ~fs~Py~~~~~~i~~~~~~-------~i~~~~dl~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (292)
T 1pb7_A 136 EFSKPFKYQGLTILVKKGT-------RITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAE 208 (292)
T ss_dssp EECSCSEEEEEEEEEETTC-------CCCSTTCHHHHSCBTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHH
T ss_pred EechhhHhcCeEEEEECCc-------CCCCCcCccccCcccceEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHH
Confidence 4678988888889988763 45677776311111 12 233322 21111000 011111111111 346
Q ss_pred HHHHHHcCCEEEEEEehhhHHHHHHcCCCeEEEeCCCceeeeeeEEEeCCCCCcc
Q 036082 90 HLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLET 144 (315)
Q Consensus 90 ~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~~PkeG~~~~~d~~~I~k~s~~~~ 144 (315)
..+++.+|++++.+.....+....+++.++..++.. .....-+++++|+++..+
T Consensus 209 ~~~~l~~G~vDa~i~d~~~~~~~~~~~~~l~~~~~~-~~~~~~~ia~~k~~~l~~ 262 (292)
T 1pb7_A 209 AIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGEL-FFRSGFGIGMRKDSPWKQ 262 (292)
T ss_dssp HHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECSSC-SEEEEECCEEETTCSSHH
T ss_pred HHHHHHcCCceEEEEcHHHHHHHHhcCCCEEEcCcc-ccCCceEEEEeCCCHHHH
Confidence 788999999998887766555555555666553211 112234678999875443
No 136
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=33.91 E-value=19 Score=21.67 Aligned_cols=11 Identities=9% Similarity=0.359 Sum_probs=9.9
Q ss_pred HHHHHHHHHhc
Q 036082 157 LIHQWIEFCLQ 167 (315)
Q Consensus 157 ~A~~FInflls 167 (315)
+|++||+||++
T Consensus 18 ~ak~fv~wLl~ 28 (30)
T 1t5q_A 18 HQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 79999999986
No 137
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=33.90 E-value=21 Score=21.97 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcH
Q 036082 157 LIHQWIEFCLQT 168 (315)
Q Consensus 157 ~A~~FInfllsp 168 (315)
+|++||+||++.
T Consensus 18 aak~fl~wL~~~ 29 (33)
T 2l63_A 18 AARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 799999999974
No 138
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=32.18 E-value=2.8e+02 Score=24.91 Aligned_cols=151 Identities=12% Similarity=0.111 Sum_probs=78.6
Q ss_pred CCCCcCCCCCeEeee-eeeceEEEEEecccccccCCCCCCChHhhcCc--ccCCceEeecCh-HHH--hhHHHHHHHHHH
Q 036082 9 DAGEIDPRGKICAAP-YRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELAGRISMVNSP-REV--IGSIAVQLNLAL 82 (315)
Q Consensus 9 ~~~~~DpdG~~Y~vP-~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~Gki~~~d~~-~~~--~g~a~~~~a~~~ 82 (315)
....|||....-.|. +......|+.+++. +.+|++||.+- +-.|++++-... ... +....+.+....
T Consensus 96 ~~~~yd~~~df~pv~~~~~~~~~lvv~~ds-------~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi 168 (314)
T 2dvz_A 96 KDLPYDPIKDFQPVTNFANTANVVAVNPKF-------PAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGT 168 (314)
T ss_dssp TTCSCCTTTSEEEEEEEEEECEEEEECTTS-------SCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTC
T ss_pred CCCCCCchhccceeeEcccCCEEEEEeCCC-------CCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCC
Confidence 345577633322232 22335567777652 67899999863 234666654331 111 111111111100
Q ss_pred -HH----hhcHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--E------------e--CC-Cce----eeeeeEEE
Q 036082 83 -LA----NQSAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--V------------P--KS-GAS----LWADLWAI 136 (315)
Q Consensus 83 -L~----~~~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~------------P--ke-G~~----~~~d~~~I 136 (315)
+. +.+.+....|..|++++++...+.+....+.+ +++. + | .| |.+ ....++++
T Consensus 169 ~~~~Vpy~G~~~a~~al~~G~vD~~~~~~~~~~~~i~~g-~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~a 247 (314)
T 2dvz_A 169 DIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAG-KLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLA 247 (314)
T ss_dssp CCEEEECSSHHHHHHHHHHTSSSEEEEEHHHHHHHHHTT-SSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEE
T ss_pred CeEEcccCCHHHHHHHHHcCCceEEEEcHHHHHHHHHcC-CEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEE
Confidence 00 00457889999999999998877776665544 2332 1 1 11 311 11246778
Q ss_pred eCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 137 PAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 137 ~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
|++.+..- -..+...|.+-+-+|+.++.+.+
T Consensus 248 p~g~p~~v---------v~~l~~al~~~~~~p~~~~~~~~ 278 (314)
T 2dvz_A 248 PKGTPMDV---------VNKLRDAAVVALKDPKVIKALDD 278 (314)
T ss_dssp ETTCCHHH---------HHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCCHHH---------HHHHHHHHHHHHcCHHHHHHHHH
Confidence 88876421 00134445555677888887763
No 139
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=31.75 E-value=2.8e+02 Score=24.69 Aligned_cols=151 Identities=11% Similarity=0.108 Sum_probs=78.6
Q ss_pred CCCCcCCCCCeEeee-eeeceEEEEEecccccccCCCCCCChHhhcCc--ccCCceEeecCh-HHH--hhHHHHHHHHHH
Q 036082 9 DAGEIDPRGKICAAP-YRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRP--ELAGRISMVNSP-REV--IGSIAVQLNLAL 82 (315)
Q Consensus 9 ~~~~~DpdG~~Y~vP-~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp--~~~Gki~~~d~~-~~~--~g~a~~~~a~~~ 82 (315)
....|||....-.|. +......|+.+++. +.+|++||.+- +-.|++++-... ... +....+.+....
T Consensus 83 ~~~~yd~~~d~~pv~~~~~~~~~lvv~~~s-------~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~ 155 (301)
T 2qpq_A 83 RNLPFDPKKDFAAVINVAYVPSVFVVPAGS-------KYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKT 155 (301)
T ss_dssp TTCSSCTTTTEEEEEEEEEEEEEEEEETTC-------SCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTC
T ss_pred cCCCCCchhcchhhhehhcCCeEEEEeCCC-------CCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCC
Confidence 345677633322232 22335567777652 67899999852 233666654321 111 111111111100
Q ss_pred -HH----hhcHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE--E---------eC------CCce----eeeeeEEE
Q 036082 83 -LA----NQSAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV--V---------PK------SGAS----LWADLWAI 136 (315)
Q Consensus 83 -L~----~~~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~--~---------Pk------eG~~----~~~d~~~I 136 (315)
+. +.+.+....|..|++++++...+.+....+.+ +++. + |. .|.+ ....++++
T Consensus 156 ~~~~Vpy~g~~~a~~al~~G~vD~~~~~~~~~~~~i~~g-~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~a 234 (301)
T 2qpq_A 156 HMVHVPYKGCGPALNDVLGSQIGLAVVTASSAIPFIKAG-KLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLV 234 (301)
T ss_dssp CCEEEECSSHHHHHHHHHTTSSSCEEEEHHHHHHHHHTT-SEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEE
T ss_pred CeEEeccCChHHHHHHHHCCCccEEEEcHHHHHHHHhcC-CeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEe
Confidence 00 01457889999999999988777666665543 3443 1 11 1211 11246778
Q ss_pred eCCCCCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHh
Q 036082 137 PAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQ 176 (315)
Q Consensus 137 ~k~s~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (315)
|++.+..- -..+...+.+-+-+|+.+..+.+
T Consensus 235 p~g~p~~v---------v~~l~~al~~~~~~~~~~~~~~~ 265 (301)
T 2qpq_A 235 PGATPMAV---------RQKLYDGIAKVMQRDDVQKKLAD 265 (301)
T ss_dssp ETTCCHHH---------HHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCCHHH---------HHHHHHHHHHHHcCHHHHHHHHH
Confidence 88876421 00144455556677888888763
No 140
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=31.39 E-value=23 Score=21.13 Aligned_cols=11 Identities=0% Similarity=0.398 Sum_probs=9.9
Q ss_pred HHHHHHHHHhc
Q 036082 157 LIHQWIEFCLQ 167 (315)
Q Consensus 157 ~A~~FInflls 167 (315)
+|++||+|+++
T Consensus 18 aak~fv~wL~~ 28 (29)
T 2g49_C 18 RAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHhc
Confidence 79999999986
No 141
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=30.08 E-value=25 Score=22.40 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcH
Q 036082 157 LIHQWIEFCLQT 168 (315)
Q Consensus 157 ~A~~FInfllsp 168 (315)
+|++||+||++.
T Consensus 18 aak~fv~wL~~~ 29 (39)
T 1jrj_A 18 AVRLFIEWLKNG 29 (39)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 799999999974
No 142
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=28.67 E-value=69 Score=25.56 Aligned_cols=55 Identities=27% Similarity=0.317 Sum_probs=36.9
Q ss_pred HHHHHHHHh-hhhhHHHHHHHHHH---HhhccchhhhcccccchhhhhhhhhHHHhhhh
Q 036082 254 VKEASAALY-ITGCTEMAEVLEVL---RETKDECLFEQSCCQSCRVREERSRRECHRFL 308 (315)
Q Consensus 254 ~~~~~a~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (315)
.++|+..++ +.+..+|.+.|+-| -+.+-+|+.|.+|-+.=.--=..++.=|.+|.
T Consensus 43 LeeASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF~~~fG~~L~~A~~~~~~y~ 101 (126)
T 2npu_A 43 LEEASRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYM 101 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 346666553 46899999888766 45578999998887665544455555565554
No 143
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=26.89 E-value=26 Score=22.71 Aligned_cols=13 Identities=8% Similarity=0.238 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhcH
Q 036082 156 PLIHQWIEFCLQT 168 (315)
Q Consensus 156 ~~A~~FInfllsp 168 (315)
.+|++||+||++.
T Consensus 17 ~~akdFv~WL~~~ 29 (42)
T 2b4n_A 17 IHQQDFVNWLLAQ 29 (42)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 3899999999974
No 144
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=26.32 E-value=96 Score=26.97 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCEEEEEEehhhHHHHHHcCC---CeEEEeCCCceeeeeeEEEeCCCCCcccccCCCCCCCHHHHHHHHHH
Q 036082 88 AHHLKAFGIGDVWVAVGWSSDVLPAVKHMS---NVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEF 164 (315)
Q Consensus 88 ~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~---~i~~~PkeG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~FInf 164 (315)
.+....| +++++++.|+..+.... ..+ .+-+-. .+. .+...+++.++.+|++ ..++|++-
T Consensus 156 ~~~~~al--~~VDaa~i~~~~a~~ag-l~~~~~~l~~e~-~~~-~~~nviv~r~~~~~~~------------~vk~l~~a 218 (241)
T 1xs5_A 156 ALLPRVF--DQVDGAVINGNYAIMAG-LSARRDGLAVEP-DAS-AYANVLVVKRGNEADA------------RVQAVLRA 218 (241)
T ss_dssp GGHHHHG--GGSSEEEECHHHHHHTT-CCTTTTCSEECS-CGG-GGCEEEEEETTCTTCH------------HHHHHHHH
T ss_pred HHHHHhh--hccCEEEECcHHHHHcC-CCcccceEEEcC-CCC-ceEEEEEEECCccChH------------HHHHHHHH
Confidence 3455666 58988898876443321 111 121211 122 3455677777767776 89999999
Q ss_pred HhcHHHHHHHHhh
Q 036082 165 CLQTARALPFKQE 177 (315)
Q Consensus 165 llspe~q~~~~~e 177 (315)
+.|+|+...+.+.
T Consensus 219 ~~s~~v~~~i~~~ 231 (241)
T 1xs5_A 219 LCGGRVRTYLKER 231 (241)
T ss_dssp HTSHHHHHHHHHH
T ss_pred HCCHHHHHHHHHh
Confidence 9999999888754
No 145
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=25.32 E-value=39 Score=20.29 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhc
Q 036082 156 PLIHQWIEFCLQ 167 (315)
Q Consensus 156 ~~A~~FInflls 167 (315)
..|++|++||++
T Consensus 17 ~~ak~Fv~wL~~ 28 (31)
T 3iol_B 17 QAAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 489999999986
No 146
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=25.18 E-value=2.7e+02 Score=22.48 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=55.7
Q ss_pred EeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHH---hh-----cHHHH
Q 036082 20 CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLA---NQ-----SAHHL 91 (315)
Q Consensus 20 Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~---~~-----~~~~~ 91 (315)
+..||.....+++.+++. +.+|++||-. .+|++........ .+...+.... +. ..+..
T Consensus 121 ~~~p~~~~~~~~~~~~~~-------~i~~~~dL~g----~~i~~~~g~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~ 186 (259)
T 2v25_A 121 FSEPYYQDAIGLLVLKEK-------KYKSLADMKG----ANIGVAQAATTKK---AIGEAAKKIGIDVKFSEFPDYPSIK 186 (259)
T ss_dssp ECSCSEEEEEEEEEEGGG-------CCCSGGGCTT----CEEEEETTCSHHH---HHHHHHHHTTCCCEEEEESSHHHHH
T ss_pred ccccceeCceEEEEeCCC-------CCCCHHHhCC----CEEEEecCCchHH---HHHHHHHhcCCceeEEEeCCHHHHH
Confidence 444888778888888763 5678998852 2355543221110 1111111110 11 24677
Q ss_pred HHHHcCCEEEEEEehhhHHHHHHcCCCeEEEeCCCceeeeeeEEEeCCC
Q 036082 92 KAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAAS 140 (315)
Q Consensus 92 ~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~~PkeG~~~~~d~~~I~k~s 140 (315)
+++.+|++++++.....+....+.++. +.+. ......-.++++++.
T Consensus 187 ~~l~~g~vDa~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~k~~ 232 (259)
T 2v25_A 187 AALDAKRVDAFSVDKSILLGYVDDKSE--ILPD-SFEPQSYGIVTKKDD 232 (259)
T ss_dssp HHHHTTSSSEEEEEHHHHTTTCCTTEE--ECSC-CCSEEEECCEEETTC
T ss_pred HHHHcCCCcEEEecHHHHHHHHHhCCC--cccc-ccccceeEEEEcCCC
Confidence 899999999998876655444433332 3221 111122367788764
No 147
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=21.81 E-value=3.8e+02 Score=23.54 Aligned_cols=119 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred eEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHHHHHHHHHHHHhh------------
Q 036082 19 ICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQ------------ 86 (315)
Q Consensus 19 ~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a~~~~a~~~L~~~------------ 86 (315)
..+.++..+..+|+.+++. +++|++|| +||..-.........+. ...|.+.
T Consensus 91 ~v~~~~~~~~~~lvv~~~s-------~i~s~~DL-----kGk~I~v~~gs~~~~~~-----~~~l~~~Gl~~~~v~~v~~ 153 (348)
T 3uif_A 91 LVAPWGTTSNSYLVVPKNS-------TAKSIKDL-----KGKKIALHRGRPWELAF-----SNLLQSEGLTFKDFKIVNV 153 (348)
T ss_dssp EEEECCCCCCCEEEEETTC-------CCCSGGGG-----TTSEEEECTTSTHHHHH-----HHHHHHTTCCGGGSEEECC
T ss_pred EEEeccCCCceEEEEECCC-------CCCCHHHc-----CCCEEEecCCChHHHHH-----HHHHHHcCCCHHHeEEEEC
Q ss_pred -cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCC----CcccccCCCCCCCHHHHHH
Q 036082 87 -SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASR----LETKQIGGRVRGLSPLIHQ 160 (315)
Q Consensus 87 -~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~----~~~~~~~~~~~~~~~~A~~ 160 (315)
..+...+|.+|++++++.+.... .+...+..-.+ ...+-...+....++..... |++ ...+
T Consensus 154 ~~~~~~~al~~G~vDa~~~~~~~~-~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------~~~~ 220 (348)
T 3uif_A 154 NPQVGAAALASGTVDGFFSLFDSY-ILEDRGVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPE------------ITQA 220 (348)
T ss_dssp CHHHHHHHHHHTSSSEEEESTTHH-HHHHTTSEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHH------------HHHH
T ss_pred CHHHHHHHHHcCCCCEEEechHHH-HHHhcCCcEEEEeccccCCCCcceeEEEECHHHHHHCHH------------HHHH
Q ss_pred HHHHHhc
Q 036082 161 WIEFCLQ 167 (315)
Q Consensus 161 FInflls 167 (315)
|++-+..
T Consensus 221 ~~~a~~~ 227 (348)
T 3uif_A 221 IVTAYLK 227 (348)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 148
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=20.70 E-value=87 Score=28.10 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=50.7
Q ss_pred ceEEEEEecccccccCCCCCCChHhhcCcccC----------CceE-eecChHHHhhHHHHHHHHHH--HH---h---hc
Q 036082 27 GTVVIAYKKSKFRKHNLAPIEDWKDLWRPELA----------GRIS-MVNSPREVIGSIAVQLNLAL--LA---N---QS 87 (315)
Q Consensus 27 g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~----------Gki~-~~d~~~~~~g~a~~~~a~~~--L~---~---~~ 87 (315)
++.+|++.++..+++ ..+|++||-+|+++ |++. ..........+ ...++. |. + .+
T Consensus 92 ~~~~l~V~~~~a~~~---~i~si~DL~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~---~~~l~~yGL~~~~~~~~~s 165 (309)
T 1r9l_A 92 AAQGYLIDKKTADQY---KITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAI---NHQLAAYELTNTVTHNQGN 165 (309)
T ss_dssp EEEEEEEEHHHHHHH---TCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHH---HHHHHHTTCTTTEEEECSC
T ss_pred ceEEEEEchhhhhhc---CCCCHHHHcCchHHHHcCCCCCCCceEEecCCCcchhHHH---HHHHHhcCCCCceEEcCCC
Confidence 467899998887665 46899999865432 2332 22222111111 122221 11 1 11
Q ss_pred -----HHHHHHHHcCCEEEEEEehhhHHHHHH-cCCCeEE
Q 036082 88 -----AHHLKAFGIGDVWVAVGWSSDVLPAVK-HMSNVAV 121 (315)
Q Consensus 88 -----~~~~~~~~~Gev~~~~~ws~~~~~~~~-~~~~i~~ 121 (315)
.+..+++.+|++.++..|+.+.....- .+.++.+
T Consensus 166 ~~~~~~~~~~A~~~g~~~v~~~w~P~~~~~~~~~g~dl~~ 205 (309)
T 1r9l_A 166 YAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVW 205 (309)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEESSSHHHHSCBTTTEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEeecCchHhhhccccCCceE
Confidence 245678899999999999988655543 2335665
Done!