Query 036083
Match_columns 404
No_of_seqs 159 out of 284
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 15:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oln_A E3 ubiquitin-protein li 100.0 2.6E-65 8.7E-70 481.2 18.0 181 180-371 4-207 (231)
2 3q0b_X Histone-lysine N-methyl 100.0 5.4E-65 1.9E-69 459.6 17.0 161 204-371 2-166 (167)
3 3fde_A E3 ubiquitin-protein li 100.0 3.5E-62 1.2E-66 455.5 18.7 161 200-371 2-182 (212)
4 2pb7_A E3 ubiquitin-protein li 100.0 3.4E-62 1.2E-66 462.0 18.1 164 196-370 5-189 (239)
5 3v2d_H 50S ribosomal protein L 17.7 31 0.001 31.2 0.4 21 320-340 152-172 (180)
6 2lq3_A Uncharacterized protein 17.7 49 0.0017 29.1 1.6 29 198-227 60-92 (130)
7 2og0_A Excisionase; protein-DN 17.0 14 0.00046 27.4 -1.7 24 205-228 27-52 (52)
8 3ush_A Uncharacterized protein 15.1 65 0.0022 28.2 1.8 29 198-227 58-90 (129)
9 3cpf_A Eukaryotic translation 13.0 2.1E+02 0.007 24.5 4.4 34 328-361 16-51 (138)
10 1bkb_A Translation initiation 12.8 3E+02 0.01 23.3 5.3 34 328-361 18-53 (136)
No 1
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12
Probab=100.00 E-value=2.6e-65 Score=481.17 Aligned_cols=181 Identities=35% Similarity=0.561 Sum_probs=145.1
Q ss_pred ccCCccHHHHHHhhhcCc-ccccCCcccCCCCccccceeccHHHHHHhccCCCcCCCcccccCCCCCCCCCCCCCceEEE
Q 036083 180 KAKRPDLKAVSKMMKNNE-ILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAI 258 (404)
Q Consensus 180 ~~~R~DLkA~~~m~~~~~-~vn~~k~iG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdy~g~~~~g~~~~~~~~gA~SI 258 (404)
.++|.|.+++++..+... +++|.++|||||||+|||||+||+||+++|||+|+|+|||++.. .+|+||
T Consensus 4 ~~~~~~g~~~a~~g~~~~~~~~p~~~~G~IPGV~VGd~f~~R~el~~~GlH~p~~aGI~g~~~-----------~GA~SI 72 (231)
T 3oln_A 4 ESRRDWGRGMACVGRTRECTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSN-----------DGAYSL 72 (231)
T ss_dssp --------------------CCCTTCCSCCTTCCTTCEESSHHHHHHTTSSCCSSCSEEEETT-----------TEEEEE
T ss_pred cccccccccccccceeEEEeecCCccCcCCCCCcCcCEEccHHHHhhhCCCCcccCCcccCCC-----------CCeEEE
Confidence 478999999999999876 79999999999999999999999999999999999999998632 369999
Q ss_pred EecCCCCCCCCCCCeEEEEccCCCCCCCCcc---ccccccccchhHHHHHh---------------hhCCCCEEEEeccC
Q 036083 259 VLSGMYEDDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALKNC---------------VDQDLPVRVIRGHD 320 (404)
Q Consensus 259 VlSGgYeDD~D~GD~LiYTGqGG~d~~g~kr---Q~~DQkLerGNlAL~nS---------------~~~g~PVRVIRG~k 320 (404)
|+||||+||.|+||+|+|||+||+|+.+|++ |++||+|++||+||++| |+.++|||||||++
T Consensus 73 VlSGgYeDD~D~Gd~liYTGsGG~d~~gnkrt~~q~~DQkl~~gNlAL~~Sc~~~~~~k~~~~~~~~~~g~PVRVIRg~k 152 (231)
T 3oln_A 73 VLAGGFADEVDRGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFK 152 (231)
T ss_dssp EESSCSSTTCBCSSEEEEECCCC-----------CCSCCCSCHHHHHHHHHSSSCCCTTTCEECSSGGGSCCEEEEEEGG
T ss_pred EecCCccccCCCCCEEEEEcCCCccCcCcccccccccccccccchHHHHhhhhccccccccchhhhhccCCceEEEeccc
Confidence 9999999999999999999999999988764 89999999999999988 45689999999999
Q ss_pred C--CCCCCC-ceeEecceEEEEEEEEeecCc-ceEEEEEEEEEeCCCCCCCcccc
Q 036083 321 C--SSSYTG-KVYTYDGLYKVVKYWAEKGLS-GFTVFKYRLRRLEGQPILTTNQV 371 (404)
Q Consensus 321 ~--~s~~ap-kgYRYDGLYkVv~yW~EkGk~-G~~V~KFkL~RlpGQP~L~~~~v 371 (404)
+ .+.|+| ++|||||||+|++||.++|++ ||.||||+|+|+|+||++|+..-
T Consensus 153 ~~k~s~yaP~~gyrYDGLY~V~~~W~e~g~s~G~~V~Kf~L~R~~gQP~~w~~~~ 207 (231)
T 3oln_A 153 GRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEG 207 (231)
T ss_dssp GTTTCTTSCSSSEEEEEEEEEEEEEEEECTTTCCEEEEEEEEECCSSCCTTSHHH
T ss_pred cCcCCCccCCCCeEeCeEEEEEEEEeccCCcCCeEEEEEEEEECCCCCCCcchhh
Confidence 6 478998 699999999999999999999 99999999999999999998754
No 2
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*
Probab=100.00 E-value=5.4e-65 Score=459.59 Aligned_cols=161 Identities=47% Similarity=0.721 Sum_probs=141.6
Q ss_pred cccCCCCccccceeccHHHHHHhccCCCcCCCcccccCCCCCCCCCCCCCceEEEEecCCCCCCCCCCCeEEEEccCCCC
Q 036083 204 RIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHN 283 (404)
Q Consensus 204 ~iG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdy~g~~~~g~~~~~~~~gA~SIVlSGgYeDD~D~GD~LiYTGqGG~d 283 (404)
+|||||||+|||||++|+|||++|+|+|+|+||||++..+ +.++|+|||+||||+||.|+||+|+|||+||++
T Consensus 2 ~~G~vpGv~vGd~f~~R~el~~~G~H~~~~aGI~~~~~~~-------~~~gA~SIV~SggY~Dd~D~gd~l~YTG~GG~~ 74 (167)
T 3q0b_X 2 IIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDG-------GELVATSIVSSGGYNDVLDNSDVLIYTGQGGNV 74 (167)
T ss_dssp CCSCCTTCCTTCEESCHHHHHHTTSCCCSSCSEEEEECSS-------SCEEEEEEEESSSTTCEECSSSEEEEECSCTTC
T ss_pred cccCCCCCcCccEecchHHHhHhCcCCCccCCeecccccC-------CCcceEEEEeCCCcccccCCCCEEEEECCCCCc
Confidence 7999999999999999999999999999999999987532 257999999999999999999999999999999
Q ss_pred CC-CCccccccccccchhHHHHHhhhCCCCEEEEeccCCC--CCCCC-ceeEecceEEEEEEEEeecCcceEEEEEEEEE
Q 036083 284 LT-GDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCS--SSYTG-KVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRR 359 (404)
Q Consensus 284 ~~-g~krQ~~DQkLerGNlAL~nS~~~g~PVRVIRG~k~~--s~~ap-kgYRYDGLYkVv~yW~EkGk~G~~V~KFkL~R 359 (404)
+. ++++|+.||+|++||+||++|+++++|||||||+++. +.++| ++|||||||+|++||.++|++||.||||+|+|
T Consensus 75 ~~~~~~~q~~DQ~l~~gN~AL~~S~~~~~pVRViRg~k~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kf~L~R 154 (167)
T 3q0b_X 75 GKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRR 154 (167)
T ss_dssp C-----CCCCCCCSSHHHHHHHHHHHHCCCEEEEEECC----------CCEEEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred cccccccccccCccchhHHHHHHHHHcCCcEEEEEeecccccCCCCCCccEEECeEEEEeeeEEeeCCCCcEEEEEEEEE
Confidence 86 6789999999999999999999999999999999983 55667 79999999999999999999999999999999
Q ss_pred eCCCCCCCcccc
Q 036083 360 LEGQPILTTNQV 371 (404)
Q Consensus 360 lpGQP~L~~~~v 371 (404)
+||||+|++++|
T Consensus 155 ~~gQp~l~~~~~ 166 (167)
T 3q0b_X 155 IPGQPELPWKEV 166 (167)
T ss_dssp CTTSCCCCC---
T ss_pred cCCCCCCChhhc
Confidence 999999999875
No 3
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A*
Probab=100.00 E-value=3.5e-62 Score=455.53 Aligned_cols=161 Identities=43% Similarity=0.674 Sum_probs=150.0
Q ss_pred ccCCcccCCCCccccceeccHHHHHHhccCCCcCCCcccccCCCCCCCCCCCCCceEEEEecCCCCCCCCCCCeEEEEcc
Q 036083 200 YSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQ 279 (404)
Q Consensus 200 n~~k~iG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdy~g~~~~g~~~~~~~~gA~SIVlSGgYeDD~D~GD~LiYTGq 279 (404)
.|.++|||||||+|||||++|+||+++|+|+++|+||+++.. .+|+|||+||||+||.|+||+|+|||+
T Consensus 2 ~p~~~~G~iPGv~VGd~f~~R~el~~~G~H~~~qaGI~g~~~-----------~GA~SIVlSGGY~DD~D~Gd~l~YTGs 70 (212)
T 3fde_A 2 MPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSN-----------DGAYSLVLAGGYEDDVDNGNYFTYTGS 70 (212)
T ss_dssp CCTTCCSCCTTCCTTCEESSHHHHHHHTSSCCSSCSEEEETT-----------TEEEEEEECSCSTTCEECSSEEEEECS
T ss_pred CCcccccCCCCCcCccEecCHHHHhHhccCCCCcCCcccCCC-----------cceEEEEeCCCcccCCCCCCEEEEecc
Confidence 588999999999999999999999999999999999997632 369999999999999999999999999
Q ss_pred CCCCCCCCcc---ccccccccchhHHHHHhh--------------hCCCCEEEEeccCC--CCCCCC-ceeEecceEEEE
Q 036083 280 GGHNLTGDKR---QIRDQKLERGNLALKNCV--------------DQDLPVRVIRGHDC--SSSYTG-KVYTYDGLYKVV 339 (404)
Q Consensus 280 GG~d~~g~kr---Q~~DQkLerGNlAL~nS~--------------~~g~PVRVIRG~k~--~s~~ap-kgYRYDGLYkVv 339 (404)
||+++.||++ |++||+|++||+||++|| ++++|||||||++. .+.|+| ++|||||||+|+
T Consensus 71 GG~d~~gnkr~~~q~~DQ~l~~gNlAL~~s~~~~~~~~~~~~~s~~~g~PVRVIRg~k~~k~s~yaP~~gyrYDGLY~V~ 150 (212)
T 3fde_A 71 GGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVV 150 (212)
T ss_dssp CCBCCTTTCSCCCBCSCCCSCHHHHHHHHTSSSCCCTTCEECSSGGGSCCEEEEEESCSSTTCSSSCSSSEEEEEEEEEE
T ss_pred CCccCcCccccCcccccccccccchHHHhhccccccccchhhhhhhcCCcEEEEcccCcCCCCccCCCCCeEeCeEEEEE
Confidence 9999988775 899999999999999885 57999999999997 478999 599999999999
Q ss_pred EEEEeecCcceEEEEEEEEEeCCCCCCCcccc
Q 036083 340 KYWAEKGLSGFTVFKYRLRRLEGQPILTTNQV 371 (404)
Q Consensus 340 ~yW~EkGk~G~~V~KFkL~RlpGQP~L~~~~v 371 (404)
+||.++|++||.||||+|+|+||||++|+..-
T Consensus 151 ~~W~e~g~~G~~V~kf~L~R~~gqp~~w~~~~ 182 (212)
T 3fde_A 151 KYWPERGKSGFLVWRYLLRRDDTEPEPWTREG 182 (212)
T ss_dssp EEEEEECTTSSEEEEEEEEECCSSCCTTSHHH
T ss_pred EEEEccCCCCcEEEEEEEEECCCCCCCcchhh
Confidence 99999999999999999999999999998754
No 4
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12
Probab=100.00 E-value=3.4e-62 Score=462.00 Aligned_cols=164 Identities=41% Similarity=0.635 Sum_probs=146.6
Q ss_pred CcccccCCcccCCCCccccceeccHHHHHHhccCCCcCCCcccccCCCCCCCCCCCCCceEEEEecCCCCCCCCCCCeEE
Q 036083 196 NEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVV 275 (404)
Q Consensus 196 ~~~vn~~k~iG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdy~g~~~~g~~~~~~~~gA~SIVlSGgYeDD~D~GD~Li 275 (404)
.+.++|.++|||||||+|||||+||+|||++|||+++|+|||++.. .+|+|||+||||+||.|+||+|+
T Consensus 5 ~~~~~~~~~~G~iPGV~VGd~f~~R~el~~~GlH~~~~aGI~g~~~-----------~GA~SIVlSGgYeDD~D~GD~li 73 (239)
T 2pb7_A 5 ECTIVPSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSN-----------DGAYSLVLAGGYEDDVDHGNFFT 73 (239)
T ss_dssp CCCSSCTTCCSCCTTCCTTCEESSHHHHHHHTSSCCSSCSEEEETT-----------TEEEEEEESSCSTTCCBCSSEEE
T ss_pred EEEecCCCcccCCCCCcCCCEECCHHHHHHhCCccccccCcccCCC-----------CCEEEEEECCCccccccCCcEEE
Confidence 4689999999999999999999999999999999999999997632 37999999999999999999999
Q ss_pred EEccCCCCCCCCcc---ccccccccchhHHHHHh---------------hhCCCCEEEEeccCC--CCCCCC-ceeEecc
Q 036083 276 YTGQGGHNLTGDKR---QIRDQKLERGNLALKNC---------------VDQDLPVRVIRGHDC--SSSYTG-KVYTYDG 334 (404)
Q Consensus 276 YTGqGG~d~~g~kr---Q~~DQkLerGNlAL~nS---------------~~~g~PVRVIRG~k~--~s~~ap-kgYRYDG 334 (404)
|||+||+++.+|++ |.+||+|++||+||++| |++++|||||||+++ .+.|+| +||||||
T Consensus 74 YTGsGG~d~~gnkr~~~q~~DQ~L~~gNlAL~~sc~~~~~~k~~~~~~s~~~g~PVRVIRg~k~~k~s~yaP~~GyrYDG 153 (239)
T 2pb7_A 74 YTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDG 153 (239)
T ss_dssp EECCCC----------CCCSCCCSCHHHHHHHHTSSSCCCTTTCEECTTGGGSCCEEEEEEGGGGGTCTTSCSSSEEEEE
T ss_pred EEccCCccCcccccccccccccccccccHHHHhhhhcccccccchhhhhhccCCceEEEcccccCcCCcccCCceEEeCC
Confidence 99999999988764 89999999999999986 568999999999998 588999 5999999
Q ss_pred eEEEEEEEEeecCcceEEEEEEEEEeCCCCCCCccc
Q 036083 335 LYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQ 370 (404)
Q Consensus 335 LYkVv~yW~EkGk~G~~V~KFkL~RlpGQP~L~~~~ 370 (404)
||+|++||.++|++||.||||+|+|+|+||++|+..
T Consensus 154 LY~V~~~w~e~gk~G~~V~kf~L~R~~gQP~~w~~~ 189 (239)
T 2pb7_A 154 IYKVVKYWPEKGKSGFLVWRYLLRRDDDEPGPWTKE 189 (239)
T ss_dssp EEEEEEEEEEECTTSSEEEEEEEEECCSSCCTTSHH
T ss_pred eEEEEEEEEeecCCCcEEEEEEEEECCCCCCCcccc
Confidence 999999999999999999999999999999998754
No 5
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=17.74 E-value=31 Score=31.19 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=16.3
Q ss_pred CCCCCCCCceeEecceEEEEE
Q 036083 320 DCSSSYTGKVYTYDGLYKVVK 340 (404)
Q Consensus 320 k~~s~~apkgYRYDGLYkVv~ 340 (404)
..+.+|.++|.||||-|...+
T Consensus 152 r~PepYKGKGIry~~e~I~~K 172 (180)
T 3v2d_H 152 RKPSAYHEKGIYYAGEPVRLK 172 (180)
T ss_dssp TCCCSSSSCEEEETTCCCCCC
T ss_pred CCCCCcCCCcccCCCEEEEEe
Confidence 345678899999999986544
No 6
>2lq3_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI:biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=17.71 E-value=49 Score=29.05 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=20.8
Q ss_pred ccccCCcccCCCCccccceecc----HHHHHHhc
Q 036083 198 ILYSAKRIGDIPGVHVGHQFYS----RAEMVAVG 227 (404)
Q Consensus 198 ~vn~~k~iG~VPGV~VGD~F~~----R~El~~vG 227 (404)
...|...||. ||+.+||.|=- ..|...+|
T Consensus 60 LsTP~Pe~~F-pGLkpGDrWClCA~RW~eA~~aG 92 (130)
T 2lq3_A 60 LMTPRPEFNF-PGLKAGDRWCLCASRWQEAFEAG 92 (130)
T ss_dssp SSCSSSSCCC-SSCCTTCCSSCCHHHHHHHHHTT
T ss_pred CCCCCcccCC-CCCCCCCeeEeeHHHHHHHHHcC
Confidence 4556678888 99999999953 34555555
No 7
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=16.99 E-value=14 Score=27.40 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=18.3
Q ss_pred ccCC--CCccccceeccHHHHHHhcc
Q 036083 205 IGDI--PGVHVGHQFYSRAEMVAVGF 228 (404)
Q Consensus 205 iG~V--PGV~VGD~F~~R~El~~vGL 228 (404)
=|.| |++.+|-.|.++.+...++|
T Consensus 27 ~G~I~Pp~~KvGr~wrv~~~a~~v~~ 52 (52)
T 2og0_A 27 ESRIFPPPVKDGREYLFHESAVKVDL 52 (52)
T ss_dssp TTCEESCCEEETTEEEEETTCEECC-
T ss_pred CCCCCCcccccCCEEEEcccceeeCC
Confidence 3667 99999999999877665543
No 8
>3ush_A Uncharacterized protein; DUF2237, PF09996, PSI-biology, NESG, structural genomics, no structural genomics consortium, unknown function; 1.69A {Salinibacter ruber}
Probab=15.05 E-value=65 Score=28.22 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=20.3
Q ss_pred ccccCCcccCCCCccccceecc----HHHHHHhc
Q 036083 198 ILYSAKRIGDIPGVHVGHQFYS----RAEMVAVG 227 (404)
Q Consensus 198 ~vn~~k~iG~VPGV~VGD~F~~----R~El~~vG 227 (404)
...|...||- ||+.+||.|=- ..|...+|
T Consensus 58 LsTP~Pe~~F-pGLkpGDrWCLCA~RW~eA~~aG 90 (129)
T 3ush_A 58 LMTPRPEMDF-PGLEPGDRWCLCAARWREAMEAG 90 (129)
T ss_dssp CSSCBGGGTB-CCCCTTCEEEECHHHHHHHHHTT
T ss_pred CCCCCcccCC-CCCCCCCeEEeeHHHHHHHHHCC
Confidence 4456667888 99999999943 34555555
No 9
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=13.02 E-value=2.1e+02 Score=24.50 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=24.1
Q ss_pred ceeEecc-eEEEEEEEEee-cCcceEEEEEEEEEeC
Q 036083 328 KVYTYDG-LYKVVKYWAEK-GLSGFTVFKYRLRRLE 361 (404)
Q Consensus 328 kgYRYDG-LYkVv~yW~Ek-Gk~G~~V~KFkL~Rlp 361 (404)
....+|| +|+|+++-..+ |+.|....+.+|+-+-
T Consensus 16 ~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~ 51 (138)
T 3cpf_A 16 GFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIF 51 (138)
T ss_dssp SEEEETTEEEEEEEEEEECC----CCEEEEEEEETT
T ss_pred CEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECC
Confidence 3578999 99999997644 6667888899988754
No 10
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=12.80 E-value=3e+02 Score=23.34 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=27.0
Q ss_pred ceeEecc-eEEEEEEEE-eecCcceEEEEEEEEEeC
Q 036083 328 KVYTYDG-LYKVVKYWA-EKGLSGFTVFKYRLRRLE 361 (404)
Q Consensus 328 kgYRYDG-LYkVv~yW~-EkGk~G~~V~KFkL~Rlp 361 (404)
..+.+|| +|+|+++-. -+|+.|....+.+|+-+-
T Consensus 18 ~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~ 53 (136)
T 1bkb_A 18 SYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVF 53 (136)
T ss_dssp CEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETT
T ss_pred CEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECC
Confidence 4588999 999999966 446666889999998764
Done!