BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036084
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Z7K6|CENPV_HUMAN Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1
Length = 275
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 17 HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 76
H GGC C VR+ V A + + CNCS C + N HF V F+LL +E +TT+TF
Sbjct: 148 HTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAEH-ITTYTF 206
Query: 77 GTGTAKHVFCKVCGITSFYVPRGTPNGM 104
T A+H FCK CG+ SFY PR P G
Sbjct: 207 NTHKAQHTFCKRCGVQSFYTPRSNPGGF 234
>sp|Q9CXS4|CENPV_MOUSE Centromere protein V OS=Mus musculus GN=Cenpv PE=2 SV=2
Length = 252
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 17 HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 76
H GGC C VR+ V A + + CNCS C + N HF V F+LL +E +TT+TF
Sbjct: 125 HTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-ITTYTF 183
Query: 77 GTGTAKHVFCKVCGITSFYVPRGTPNGM 104
T A+H FCK CG+ SFY PR P G
Sbjct: 184 NTHKAQHTFCKRCGVQSFYTPRSNPGGF 211
>sp|Q6BS64|DUS3_DEBHA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=DUS3 PE=3 SV=1
Length = 622
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 57 APENFELLGNSEEFLTTH----TFGTGTAKHVFCKVCGITSFYVPRG 99
+ E E++G +F H +G G A+ C+ G T Y+P G
Sbjct: 513 STERLEMIGQYAKFAIEHWGSDEYGVGLARRFMCEFLGFTHRYIPVG 559
>sp|Q5U4C3|SFR19_MOUSE Splicing factor, arginine/serine-rich 19 OS=Mus musculus GN=Scaf1
PE=1 SV=1
Length = 1256
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 SSMDQDSGLHKGGCRCRKVRWR--VRAPRS 35
SS+ D K G RCR +RWR R+PRS
Sbjct: 45 SSLQGDLPNDKDGARCRGLRWRRCCRSPRS 74
>sp|Q750P5|KYNU_ASHGO Kynureninase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=BNA5 PE=3 SV=2
Length = 447
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 17 HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRG-------NVHFTVAPENFELLGNSEE 69
H GC RK R V A S AW + +R N + P+ ++G S++
Sbjct: 41 HSLGCMPRKTRGSVEAELS--AWSARAVEAHVRHPGGTEWVNTDLPLVPQMARMVGASQQ 98
Query: 70 FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLLLSDIKHNDGH 116
+ T + + +FY PRG +LL + +D H
Sbjct: 99 EVAVMGSLTANLNAL------LVAFYRPRGRRTKILLEKQVFPSDFH 139
>sp|Q920R4|GASP1_RAT G-protein coupled receptor-associated sorting protein 1 OS=Rattus
norvegicus GN=Gprasp1 PE=1 SV=1
Length = 1346
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 24 RKVRWRVRAPRSVEA--WKCNCSDCSMRGNVHFTVAPENFELL 64
R++R ++A S +A W CNC C +R + E FE L
Sbjct: 1072 REIREHLKARESAQAENWSCNCIQCELR------IGSEEFEEL 1108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,099,558
Number of Sequences: 539616
Number of extensions: 1912139
Number of successful extensions: 3347
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3343
Number of HSP's gapped (non-prelim): 8
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)