Query 036084
Match_columns 126
No_of_seqs 181 out of 1056
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 15:42:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fac_A Putative uncharacterize 100.0 6.8E-30 2.3E-34 172.6 7.5 100 17-120 1-102 (118)
2 1x6m_A GFA, glutathione-depend 99.9 8.6E-27 2.9E-31 169.9 6.3 113 10-125 19-142 (196)
3 3j20_Y 30S ribosomal protein S 91.5 0.082 2.8E-06 29.7 1.6 17 82-98 18-34 (50)
4 2k4x_A 30S ribosomal protein S 87.5 0.16 5.5E-06 29.0 0.7 14 83-96 18-31 (55)
5 2con_A RUH-035 protein, NIN on 79.3 0.48 1.6E-05 29.1 0.4 17 79-95 26-42 (79)
6 3h0g_I DNA-directed RNA polyme 58.6 3 0.0001 26.9 0.8 16 83-98 4-19 (113)
7 3cng_A Nudix hydrolase; struct 57.5 3.1 0.00011 28.4 0.8 14 83-96 3-16 (189)
8 2jrp_A Putative cytoplasmic pr 55.7 6.8 0.00023 24.0 2.0 12 82-93 30-41 (81)
9 1x0t_A Ribonuclease P protein 54.5 2.8 9.7E-05 27.4 0.2 17 78-94 60-76 (120)
10 2k3r_A Ribonuclease P protein 54.4 2.8 9.7E-05 27.6 0.1 17 78-94 55-71 (123)
11 1twf_I B12.6, DNA-directed RNA 53.7 4.3 0.00015 26.5 0.9 14 83-96 4-17 (122)
12 3qt1_I DNA-directed RNA polyme 51.4 4.9 0.00017 26.8 1.0 18 80-97 21-38 (133)
13 2lcq_A Putative toxin VAPC6; P 50.6 4.7 0.00016 27.3 0.8 13 83-95 148-160 (165)
14 1l8d_A DNA double-strand break 45.3 6 0.0002 24.9 0.6 11 85-95 49-59 (112)
15 1twf_L ABC10-alpha, DNA-direct 41.7 11 0.00037 22.3 1.3 15 84-98 46-60 (70)
16 2i5o_A DNA polymerase ETA; zin 35.1 14 0.00048 19.3 1.0 14 82-95 8-21 (39)
17 1hcn_B Human chorionic gonadot 34.3 16 0.00056 24.7 1.5 50 1-50 35-97 (145)
18 3e0o_A Peptide methionine sulf 34.0 34 0.0012 23.1 3.0 20 82-101 89-108 (144)
19 1zfo_A LAsp-1; LIM domain, zin 32.4 17 0.00057 17.6 0.9 12 85-96 5-16 (31)
20 4ay9_B Follitropin subunit bet 32.3 14 0.00049 23.9 0.8 50 1-50 29-91 (111)
21 1jni_A NAPB;, diheme cytochrom 32.2 10 0.00036 25.0 0.2 13 81-93 92-104 (123)
22 1vq8_Z 50S ribosomal protein L 31.3 15 0.00051 22.4 0.8 15 82-96 26-40 (83)
23 1ogy_B Diheme cytochrome C NAP 30.8 10 0.00035 25.3 -0.0 13 81-93 93-105 (130)
24 1vk6_A NADH pyrophosphatase; 1 30.6 12 0.00042 27.4 0.4 14 82-95 106-119 (269)
25 3h0g_L DNA-directed RNA polyme 30.2 22 0.00075 20.6 1.3 16 84-99 39-54 (63)
26 2jne_A Hypothetical protein YF 28.6 28 0.00095 22.1 1.7 16 79-94 57-72 (101)
27 3hcg_A Peptide methionine sulf 28.4 24 0.00083 23.9 1.5 19 83-101 92-110 (146)
28 4esj_A Type-2 restriction enzy 28.4 19 0.00063 26.6 1.0 11 83-93 34-45 (257)
29 2fiy_A Protein FDHE homolog; F 27.7 67 0.0023 24.2 4.0 74 17-96 181-266 (309)
30 3ml1_B NAPB, diheme cytochrome 27.0 10 0.00034 25.5 -0.6 13 81-93 94-106 (135)
31 1e8j_A Rubredoxin; iron-sulfur 26.9 29 0.00098 19.1 1.4 14 82-96 2-15 (52)
32 2l1u_A MSRB2, methionine-R-sul 26.7 35 0.0012 23.0 2.1 20 82-101 92-111 (143)
33 1t2y_A Metallothionein, MT; pr 25.6 9.6 0.00033 18.2 -0.7 8 18-25 8-15 (26)
34 3hcj_A MSRB, peptide methionin 25.5 28 0.00097 23.8 1.4 20 82-101 98-117 (154)
35 3mao_A Methionine-R-sulfoxide 25.4 55 0.0019 20.9 2.7 17 81-97 59-75 (105)
36 3ga8_A HTH-type transcriptiona 23.7 32 0.0011 20.2 1.3 16 81-96 34-49 (78)
37 2k5c_A Uncharacterized protein 23.5 24 0.00083 21.7 0.7 12 85-96 10-21 (95)
38 2lo3_A SAGA-associated factor 23.2 35 0.0012 18.2 1.2 16 81-96 15-30 (44)
39 2e72_A POGO transposable eleme 22.6 30 0.001 19.0 0.9 12 82-93 11-22 (49)
40 2zkr_2 60S ribosomal protein L 22.5 31 0.0011 21.7 1.1 16 81-96 14-29 (97)
41 3e0m_A Peptide methionine sulf 22.2 47 0.0016 25.3 2.2 20 82-101 257-276 (313)
42 3cxk_A Methionine-R-sulfoxide 22.0 46 0.0016 22.9 2.0 20 82-101 121-140 (164)
43 3o9x_A Uncharacterized HTH-typ 21.4 37 0.0013 21.4 1.4 16 81-96 34-49 (133)
44 2l6l_A DNAJ homolog subfamily 21.4 35 0.0012 22.6 1.2 35 14-49 108-142 (155)
45 1pft_A TFIIB, PFTFIIBN; N-term 21.2 34 0.0012 18.2 1.0 15 83-97 5-20 (50)
46 3j21_j 50S ribosomal protein L 20.7 42 0.0014 21.0 1.4 16 81-96 6-21 (94)
47 2elu_A Zinc finger protein 406 20.5 17 0.00059 18.3 -0.3 9 41-49 10-18 (37)
48 2kao_A Methionine-R-sulfoxide 20.5 97 0.0033 20.3 3.2 16 82-97 67-82 (124)
No 1
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=99.96 E-value=6.8e-30 Score=172.60 Aligned_cols=100 Identities=32% Similarity=0.542 Sum_probs=86.9
Q ss_pred eEEeeeCCCeEEEEEcC--CCCeeeeecChhhhcCCceeEEecCCCeEEcCCCCcceeEEecCCCeeeeeeCCcCCcccc
Q 036084 17 HKGGCRCRKVRWRVRAP--RSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSF 94 (126)
Q Consensus 17 ~~GsC~CGaV~~~v~~~--p~~~~~~ChC~~Crk~~g~~~~~~~~~~~i~~g~~~~l~~y~~~~~~~~r~FC~~CGs~l~ 94 (126)
++|+|+||+|+|+++++ |... ..|||++|||.+++++.+|.++|+|+.| ++.|+.|.++++..+|+||++||++||
T Consensus 1 m~GsC~CGaV~~~v~~~~~p~~~-~~ChC~~Crk~g~~~~~~~~~~~~~~~g-~~~l~~y~~s~~~~~r~FC~~CGs~l~ 78 (118)
T 3fac_A 1 MKGTCHCGAVEIEVELLNGFADA-RRCDCSFCRRRGAIAATARLSDLRVVRG-AENLTLYQFGTRTAKHWFCRTCGIYTH 78 (118)
T ss_dssp CEEECSSSCCEEEECCTTTTTTC-BCCCSTTHHHHCCCEEEEEGGGEEEEEC-GGGEEEECCTTSCSEEEEETTTCCEEE
T ss_pred CCeEeeCCCEEEEEEcCCCcCCe-eeeCchHhhccCCEEEEEcccceEEcCC-hhHceEEecCCCCEeeEECCCCCcccc
Confidence 37999999999999976 5555 8999999999987888999999999888 688999987777789999999999999
Q ss_pred cCCCCCCCcEEEEEeeeecCCCCccc
Q 036084 95 YVPRGTPNGMLLLSDIKHNDGHNWES 120 (126)
Q Consensus 95 ~~~~~~p~~~~v~v~~g~~d~~~~~~ 120 (126)
+.....|+. +.|++|+||+++.++
T Consensus 79 ~~~~~~~~~--~~V~~g~ld~~~~~~ 102 (118)
T 3fac_A 79 HQRRSNPEE--YGVNVAILEGVNPRD 102 (118)
T ss_dssp EECSSCTTE--EEEEGGGBTTCCGGG
T ss_pred CccCCCCCE--EEEEecccCCCChHH
Confidence 887666775 579999999987554
No 2
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=99.93 E-value=8.6e-27 Score=169.85 Aligned_cols=113 Identities=20% Similarity=0.366 Sum_probs=93.0
Q ss_pred cCCCCceeEEe---eeCC--CeEEEEEcCCCCeeeeecChhhhcCCc----eeEEecCCCeEEcCCCCcceeEEecCCCe
Q 036084 10 MDQDSGLHKGG---CRCR--KVRWRVRAPRSVEAWKCNCSDCSMRGN----VHFTVAPENFELLGNSEEFLTTHTFGTGT 80 (126)
Q Consensus 10 m~~~~~~~~Gs---C~CG--aV~~~v~~~p~~~~~~ChC~~Crk~~g----~~~~~~~~~~~i~~g~~~~l~~y~~~~~~ 80 (126)
|+.+..+++|+ |+|| +|+|+++++|... ..|||++|||.+| .++.+|+++|+|+.| ++.|+.|. +++.
T Consensus 19 ~~~~~~~~~G~~lsC~CG~v~V~~~~~~~p~~~-~~ChCs~Crk~~Gs~f~~~~~vp~~~~~~~~G-~~~l~~y~-ss~~ 95 (196)
T 1x6m_A 19 IKPAQPGFAGGTLHCKCSTNPVRVAVRAQTAHN-HVCGCTKCWKPEGAIFSQVAVVGRDALEVLEG-AEKLEIVN-AEAP 95 (196)
T ss_dssp CCCCCTTCCCEEEECSCSSSCCEEEECSCCEEE-EEECCSSSCCCTTCSSEEEEEEEGGGEEEEEC-GGGEEESC-TTSS
T ss_pred CCCCCccccCCCCEecCCCCeEEEEEecCCCCe-EecCcHHHhcccCCccEEEEEEehhHeEEecC-CCceEEEe-CCCC
Confidence 44556679999 9999 9999999888765 8999999999985 467899999999888 67899995 7778
Q ss_pred eeeeeCCcCCcccccCCCCCCCc--EEEEEeeeecCCCCcccccccC
Q 036084 81 AKHVFCKVCGITSFYVPRGTPNG--MLLLSDIKHNDGHNWESSLDQL 125 (126)
Q Consensus 81 ~~r~FC~~CGs~l~~~~~~~p~~--~~v~v~~g~~d~~~~~~~~~~~ 125 (126)
++|+||++||++||+...+.++. -.+.|++|+||++.+++|..+|
T Consensus 96 ~~r~FC~~CGs~l~~~~~~~~~~~~~~~~V~~g~lD~~~~~~P~~hi 142 (196)
T 1x6m_A 96 IQRHRCRDCGVHMYGRIENRDHPFYGLDFVHTELSDEDGWSAPEFAA 142 (196)
T ss_dssp EEEEEETTTCCEEEEEECCTTSTTTTEEEECGGGBSCCCCCCCCEEE
T ss_pred eeeEECCCCCCcCCcccccCCCCccceEEEEEeccCCcccCCCeEEE
Confidence 99999999999999887654321 0267999999999988876554
No 3
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.50 E-value=0.082 Score=29.68 Aligned_cols=17 Identities=35% Similarity=0.761 Sum_probs=12.9
Q ss_pred eeeeCCcCCcccccCCC
Q 036084 82 KHVFCKVCGITSFYVPR 98 (126)
Q Consensus 82 ~r~FC~~CGs~l~~~~~ 98 (126)
.+.|||+||+.+|....
T Consensus 18 ~~k~CP~CG~~~fm~~~ 34 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADH 34 (50)
T ss_dssp SSEECSSSCSSCEEEEC
T ss_pred ecccCCCCCCceEEecC
Confidence 46799999998876543
No 4
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=87.50 E-value=0.16 Score=29.04 Aligned_cols=14 Identities=43% Similarity=0.961 Sum_probs=11.1
Q ss_pred eeeCCcCCcccccC
Q 036084 83 HVFCKVCGITSFYV 96 (126)
Q Consensus 83 r~FC~~CGs~l~~~ 96 (126)
+.|||.||+.++..
T Consensus 18 ~~fCPkCG~~~~ma 31 (55)
T 2k4x_A 18 HRFCPRCGPGVFLA 31 (55)
T ss_dssp SCCCTTTTTTCCCE
T ss_pred cccCcCCCCceeEe
Confidence 67999999987644
No 5
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=79.26 E-value=0.48 Score=29.10 Aligned_cols=17 Identities=29% Similarity=0.720 Sum_probs=13.2
Q ss_pred CeeeeeeCCcCCccccc
Q 036084 79 GTAKHVFCKVCGITSFY 95 (126)
Q Consensus 79 ~~~~r~FC~~CGs~l~~ 95 (126)
....+.|||.||-....
T Consensus 26 ~~~~k~FCp~CGn~TL~ 42 (79)
T 2con_A 26 SDMNRVFCGHCGNKTLK 42 (79)
T ss_dssp SCSSCCSCSSSCCSCCE
T ss_pred CCcccccccccCcccce
Confidence 34688999999987543
No 6
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=58.65 E-value=3 Score=26.89 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=12.9
Q ss_pred eeeCCcCCcccccCCC
Q 036084 83 HVFCKVCGITSFYVPR 98 (126)
Q Consensus 83 r~FC~~CGs~l~~~~~ 98 (126)
-.||++||.-|+....
T Consensus 4 m~FCp~Cgn~L~~~~~ 19 (113)
T 3h0g_I 4 FQYCIECNNMLYPRED 19 (113)
T ss_dssp CCCCSSSCCCCEECCC
T ss_pred ceeCcCCCCEeeEccc
Confidence 4699999999987643
No 7
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=57.55 E-value=3.1 Score=28.39 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=11.5
Q ss_pred eeeCCcCCcccccC
Q 036084 83 HVFCKVCGITSFYV 96 (126)
Q Consensus 83 r~FC~~CGs~l~~~ 96 (126)
..||++||+.+-..
T Consensus 3 ~~~C~~CG~~~~~~ 16 (189)
T 3cng_A 3 MKFCSQCGGEVILR 16 (189)
T ss_dssp CCBCTTTCCBCEEE
T ss_pred cccCchhCCccccc
Confidence 56999999999654
No 8
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=55.67 E-value=6.8 Score=23.99 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=7.7
Q ss_pred eeeeCCcCCccc
Q 036084 82 KHVFCKVCGITS 93 (126)
Q Consensus 82 ~r~FC~~CGs~l 93 (126)
...|||+||.+|
T Consensus 30 ~~afCPeCgq~L 41 (81)
T 2jrp_A 30 LQALCPDCRQPL 41 (81)
T ss_dssp EEEECSSSCSCC
T ss_pred CcccCcchhhHH
Confidence 334777777776
No 9
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=54.49 E-value=2.8 Score=27.39 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=13.7
Q ss_pred CCeeeeeeCCcCCcccc
Q 036084 78 TGTAKHVFCKVCGITSF 94 (126)
Q Consensus 78 ~~~~~r~FC~~CGs~l~ 94 (126)
++...|.||..||+.|-
T Consensus 60 p~~~KR~~Ck~C~s~Li 76 (120)
T 1x0t_A 60 PRKWKRRYCKRCHTFLI 76 (120)
T ss_dssp CTTTTTSBCTTTCCBCC
T ss_pred CHHHHHHhccCCCCEeE
Confidence 34578899999999874
No 10
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=54.35 E-value=2.8 Score=27.56 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.7
Q ss_pred CCeeeeeeCCcCCcccc
Q 036084 78 TGTAKHVFCKVCGITSF 94 (126)
Q Consensus 78 ~~~~~r~FC~~CGs~l~ 94 (126)
++...|.||..||+.+-
T Consensus 55 p~~~KR~~Ck~C~s~LI 71 (123)
T 2k3r_A 55 PRKWKRRYCKKCHAFLV 71 (123)
T ss_dssp SSTTTTSBCTTTCCBCC
T ss_pred CHHHHHHhccCCCCEeE
Confidence 34478899999999874
No 11
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=53.66 E-value=4.3 Score=26.51 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=11.7
Q ss_pred eeeCCcCCcccccC
Q 036084 83 HVFCKVCGITSFYV 96 (126)
Q Consensus 83 r~FC~~CGs~l~~~ 96 (126)
-.||+.||.-|+..
T Consensus 4 ~~FCp~CgnlL~~~ 17 (122)
T 1twf_I 4 FRFCRDCNNMLYPR 17 (122)
T ss_dssp CCBCSSSCCBCEEE
T ss_pred CCcccccCccCccc
Confidence 46999999999854
No 12
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=51.44 E-value=4.9 Score=26.78 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=14.0
Q ss_pred eeeeeeCCcCCcccccCC
Q 036084 80 TAKHVFCKVCGITSFYVP 97 (126)
Q Consensus 80 ~~~r~FC~~CGs~l~~~~ 97 (126)
.+.-.||+.||+-|+-..
T Consensus 21 ~~~~~FCPeCgNmL~pke 38 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPRE 38 (133)
T ss_dssp -CCCCBCTTTCCBCBCCB
T ss_pred ccCCeeCCCCCCEeeECc
Confidence 456679999999998764
No 13
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=50.58 E-value=4.7 Score=27.27 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=10.3
Q ss_pred eeeCCcCCccccc
Q 036084 83 HVFCKVCGITSFY 95 (126)
Q Consensus 83 r~FC~~CGs~l~~ 95 (126)
..|||.||+++-.
T Consensus 148 ~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 148 GGVCPDCGSKVKL 160 (165)
T ss_dssp GGBCTTTCCBEEE
T ss_pred CCcCCCCCCccee
Confidence 4599999999643
No 14
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.29 E-value=6 Score=24.94 Aligned_cols=11 Identities=36% Similarity=0.591 Sum_probs=9.1
Q ss_pred eCCcCCccccc
Q 036084 85 FCKVCGITSFY 95 (126)
Q Consensus 85 FC~~CGs~l~~ 95 (126)
-||.||+++..
T Consensus 49 ~CPvCgs~l~~ 59 (112)
T 1l8d_A 49 KCPVCGRELTD 59 (112)
T ss_dssp ECTTTCCEECH
T ss_pred CCCCCCCcCCH
Confidence 49999999853
No 15
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=41.67 E-value=11 Score=22.31 Aligned_cols=15 Identities=40% Similarity=0.693 Sum_probs=11.8
Q ss_pred eeCCcCCcccccCCC
Q 036084 84 VFCKVCGITSFYVPR 98 (126)
Q Consensus 84 ~FC~~CGs~l~~~~~ 98 (126)
.+|+.||..|.+..+
T Consensus 46 irCp~CG~RILyK~R 60 (70)
T 1twf_L 46 VRCKDCGHRILLKAR 60 (70)
T ss_dssp TCCSSSCCCCCBCCC
T ss_pred ccCCCCCceEeEecC
Confidence 479999998777655
No 16
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=35.14 E-value=14 Score=19.29 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=10.7
Q ss_pred eeeeCCcCCccccc
Q 036084 82 KHVFCKVCGITSFY 95 (126)
Q Consensus 82 ~r~FC~~CGs~l~~ 95 (126)
..+.|++||..|-.
T Consensus 8 ~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 8 DQVPCEKCGSLVPV 21 (39)
T ss_dssp CEEECTTTCCEEEG
T ss_pred CCcccccccCcCCc
Confidence 44679999998754
No 17
>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B*
Probab=34.33 E-value=16 Score=24.69 Aligned_cols=50 Identities=22% Similarity=0.472 Sum_probs=31.7
Q ss_pred Ccccccccc-cCCC-CceeEEeeeCCCeEEEEEcCC----C-------CeeeeecChhhhcCC
Q 036084 1 WSYCESLSS-MDQD-SGLHKGGCRCRKVRWRVRAPR----S-------VEAWKCNCSDCSMRG 50 (126)
Q Consensus 1 ~~~~~~~~~-m~~~-~~~~~GsC~CGaV~~~v~~~p----~-------~~~~~ChC~~Crk~~ 50 (126)
|+||++... +... .....--|-=+.++|+...-| . .+|..|||..|...+
T Consensus 35 ~GyC~T~dpv~~~p~~~~~Q~vCTy~e~~y~tv~LpgC~~gvdp~~tYPVA~SC~C~~C~~~~ 97 (145)
T 1hcn_B 35 AGYCPTMTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRST 97 (145)
T ss_dssp EEEEEECCCCBTTCSSCCCCEEEEEEEEEEEEEECTTCCSSCCCEEEEEEEEEEEEEECCTTT
T ss_pred cCEeecCCCCCcCCCCCccCCCcccCCEEEEEEEcCCCcCCCCccEEecccccccCCCCCCCC
Confidence 678888862 1111 122345688888888765432 1 135789999999765
No 18
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=34.00 E-value=34 Score=23.08 Aligned_cols=20 Identities=15% Similarity=-0.014 Sum_probs=15.1
Q ss_pred eeeeCCcCCcccccCCCCCC
Q 036084 82 KHVFCKVCGITSFYVPRGTP 101 (126)
Q Consensus 82 ~r~FC~~CGs~l~~~~~~~p 101 (126)
+-..|.+||++|.+...+.|
T Consensus 89 tEV~C~~Cg~HLGHVF~DGP 108 (144)
T 3e0o_A 89 TEVRSRTADSHLGHVFNDGP 108 (144)
T ss_dssp EEEEETTTCCEEEEEESCCS
T ss_pred EEEEcCCCCCccCCccCCCC
Confidence 34689999999987665544
No 19
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=32.42 E-value=17 Score=17.63 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=10.1
Q ss_pred eCCcCCcccccC
Q 036084 85 FCKVCGITSFYV 96 (126)
Q Consensus 85 FC~~CGs~l~~~ 96 (126)
-|+.||.++|..
T Consensus 5 ~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 5 NCARCGKIVYPT 16 (31)
T ss_dssp BCSSSCSBCCGG
T ss_pred cCCccCCEEecc
Confidence 499999999864
No 20
>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_B* 1fl7_B*
Probab=32.30 E-value=14 Score=23.86 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=31.2
Q ss_pred Ccccccccc-c-CCCCceeEEeeeCCCeEEEEEcCC----C-------CeeeeecChhhhcCC
Q 036084 1 WSYCESLSS-M-DQDSGLHKGGCRCRKVRWRVRAPR----S-------VEAWKCNCSDCSMRG 50 (126)
Q Consensus 1 ~~~~~~~~~-m-~~~~~~~~GsC~CGaV~~~v~~~p----~-------~~~~~ChC~~Crk~~ 50 (126)
|+||++.-. + ..-...+.--|-=+.++|+...-| . .+|..|||..|...+
T Consensus 29 ~G~C~T~d~v~~~p~~~~~Q~VCty~~~~y~tv~LpgC~pgVdP~~tYPVA~sC~C~~C~t~~ 91 (111)
T 4ay9_B 29 AGYCYTRDLVYKDPARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDS 91 (111)
T ss_dssp EEEEEEECCSSCCTTCCCCCCEEEEEEEEEEEEEECCCTTSCCEEEEEEEEEEEEEECBCTTT
T ss_pred ccCcccCCccccCcCCCccCCCcccCCEEEEEEECCCccCCCCCCEEeeecccccCCCcCCCC
Confidence 567766543 1 111223456698899999876532 1 135789999998765
No 21
>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3
Probab=32.17 E-value=10 Score=24.98 Aligned_cols=13 Identities=23% Similarity=0.828 Sum_probs=10.3
Q ss_pred eeeeeCCcCCccc
Q 036084 81 AKHVFCKVCGITS 93 (126)
Q Consensus 81 ~~r~FC~~CGs~l 93 (126)
-.|+||..|..+=
T Consensus 92 p~Ry~CtqCHVPQ 104 (123)
T 1jni_A 92 PRRYFCLQCHVSQ 104 (123)
T ss_dssp CCSCCGGGTCCC-
T ss_pred ccceecccccCCc
Confidence 4899999997764
No 22
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=31.29 E-value=15 Score=22.42 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=10.8
Q ss_pred eeeeCCcCCcccccC
Q 036084 82 KHVFCKVCGITSFYV 96 (126)
Q Consensus 82 ~r~FC~~CGs~l~~~ 96 (126)
.++.|+.||..+...
T Consensus 26 ~~y~Cp~CG~~~v~r 40 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDR 40 (83)
T ss_dssp SCEECSSSCCEEEEE
T ss_pred ccCcCCCCCCcceec
Confidence 467899998866544
No 23
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=30.84 E-value=10 Score=25.26 Aligned_cols=13 Identities=23% Similarity=0.889 Sum_probs=10.9
Q ss_pred eeeeeCCcCCccc
Q 036084 81 AKHVFCKVCGITS 93 (126)
Q Consensus 81 ~~r~FC~~CGs~l 93 (126)
-.||||..|..+=
T Consensus 93 p~RYfCtQCHVpQ 105 (130)
T 1ogy_B 93 PRRYFCTACHVPQ 105 (130)
T ss_dssp STTCCGGGTCCBC
T ss_pred ccceecccccCcc
Confidence 4899999998774
No 24
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=30.57 E-value=12 Score=27.42 Aligned_cols=14 Identities=29% Similarity=0.838 Sum_probs=11.0
Q ss_pred eeeeCCcCCccccc
Q 036084 82 KHVFCKVCGITSFY 95 (126)
Q Consensus 82 ~r~FC~~CGs~l~~ 95 (126)
+..||+.||+++..
T Consensus 106 ~~~fC~~CG~~~~~ 119 (269)
T 1vk6_A 106 SHKYCGYCGHEMYP 119 (269)
T ss_dssp TTSBCTTTCCBEEE
T ss_pred cCCccccCCCcCcc
Confidence 45699999999843
No 25
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=30.17 E-value=22 Score=20.59 Aligned_cols=16 Identities=31% Similarity=0.746 Sum_probs=13.2
Q ss_pred eeCCcCCcccccCCCC
Q 036084 84 VFCKVCGITSFYVPRG 99 (126)
Q Consensus 84 ~FC~~CGs~l~~~~~~ 99 (126)
.-|+.||..|++..+.
T Consensus 39 iRC~~CG~RILyK~Rt 54 (63)
T 3h0g_L 39 IRCRECGHRVMYKMRT 54 (63)
T ss_dssp CCCSSSCCCCCBCCCC
T ss_pred eECCCCCcEEEEEecC
Confidence 4699999999988764
No 26
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.60 E-value=28 Score=22.07 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=12.0
Q ss_pred CeeeeeeCCcCCcccc
Q 036084 79 GTAKHVFCKVCGITSF 94 (126)
Q Consensus 79 ~~~~r~FC~~CGs~l~ 94 (126)
.-....|||+||.+|-
T Consensus 57 ~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 57 FIEMKALCPDCHQPLQ 72 (101)
T ss_dssp EEEEEEECTTTCSBCE
T ss_pred hhhccccCcchhhHHH
Confidence 3456679999999874
No 27
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=28.43 E-value=24 Score=23.87 Aligned_cols=19 Identities=16% Similarity=-0.073 Sum_probs=14.6
Q ss_pred eeeCCcCCcccccCCCCCC
Q 036084 83 HVFCKVCGITSFYVPRGTP 101 (126)
Q Consensus 83 r~FC~~CGs~l~~~~~~~p 101 (126)
-..|.+||++|.+...+.|
T Consensus 92 EV~C~~Cg~HLGHVF~DGP 110 (146)
T 3hcg_A 92 EVRSHAADSHLGHVFPDGP 110 (146)
T ss_dssp EEEETTTCCEEEEEESCSC
T ss_pred EEEeCCCCCccCceeCCCC
Confidence 3579999999987765544
No 28
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=28.40 E-value=19 Score=26.62 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=8.8
Q ss_pred eeeCCcCCc-cc
Q 036084 83 HVFCKVCGI-TS 93 (126)
Q Consensus 83 r~FC~~CGs-~l 93 (126)
..+||+||+ +|
T Consensus 34 n~yCPnCG~~~l 45 (257)
T 4esj_A 34 QSYCPNCGNNPL 45 (257)
T ss_dssp HCCCTTTCCSSC
T ss_pred CCcCCCCCChhh
Confidence 358999999 45
No 29
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.66 E-value=67 Score=24.17 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=36.1
Q ss_pred eEEeee-CCCeEEEE--E--cCCCCeeeeecChhhhcCCceeEEecCCCeEEcCCCCcceeEEecCC-------Ceeeee
Q 036084 17 HKGGCR-CRKVRWRV--R--APRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGT-------GTAKHV 84 (126)
Q Consensus 17 ~~GsC~-CGaV~~~v--~--~~p~~~~~~ChC~~Crk~~g~~~~~~~~~~~i~~g~~~~l~~y~~~~-------~~~~r~ 84 (126)
..|.|- ||..-... . +..... .++||+.|.-.- - +++-.=..-+. .+.+..+...+ ...+-.
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~-R~l~Cs~C~t~W---~-~~R~~C~~Cg~-~~~l~y~~~e~~~~~~~~~~~r~e 254 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGL-RYLSCSLCACEW---H-YVRIKCSHCEE-SKHLAYLSLEHDGQPAEKAVLRAE 254 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCE-EEEEETTTCCEE---E-CCTTSCSSSCC-CSCCEEECCCC-CCCSTTCSEEEE
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCc-EEEEeCCCCCEE---e-ecCcCCcCCCC-CCCeeEEEecCccccCCCcceEEE
Confidence 457774 77754332 2 222333 689999996421 1 11100001111 12233332222 456777
Q ss_pred eCCcCCcccccC
Q 036084 85 FCKVCGITSFYV 96 (126)
Q Consensus 85 FC~~CGs~l~~~ 96 (126)
.|.+||+.+-..
T Consensus 255 ~C~~C~~YlK~~ 266 (309)
T 2fiy_A 255 TCPSCQGYLKQF 266 (309)
T ss_dssp EETTTTEEEEEE
T ss_pred EcccccchHhhh
Confidence 899999987543
No 30
>3ml1_B NAPB, diheme cytochrome C NAPB; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_B*
Probab=27.00 E-value=10 Score=25.46 Aligned_cols=13 Identities=23% Similarity=0.848 Sum_probs=10.9
Q ss_pred eeeeeCCcCCccc
Q 036084 81 AKHVFCKVCGITS 93 (126)
Q Consensus 81 ~~r~FC~~CGs~l 93 (126)
-.||||..|..+=
T Consensus 94 p~RYfCtQCHVPQ 106 (135)
T 3ml1_B 94 PRRYFCTQCHVPQ 106 (135)
T ss_dssp HHHHSGGGTCCBC
T ss_pred ccceeeccccCcc
Confidence 4899999998774
No 31
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=26.90 E-value=29 Score=19.13 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=9.4
Q ss_pred eeeeCCcCCcccccC
Q 036084 82 KHVFCKVCGITSFYV 96 (126)
Q Consensus 82 ~r~FC~~CGs~l~~~ 96 (126)
.++.|..|| .+|..
T Consensus 2 ~~y~C~~CG-yvYd~ 15 (52)
T 1e8j_A 2 DIYVCTVCG-YEYDP 15 (52)
T ss_dssp CCEECSSSC-CCCCT
T ss_pred CcEEeCCCC-eEEcC
Confidence 357899998 44443
No 32
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=26.68 E-value=35 Score=22.99 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=15.6
Q ss_pred eeeeCCcCCcccccCCCCCC
Q 036084 82 KHVFCKVCGITSFYVPRGTP 101 (126)
Q Consensus 82 ~r~FC~~CGs~l~~~~~~~p 101 (126)
+-..|.+||++|.....+.|
T Consensus 92 tEV~C~~Cg~HLGHVF~DGP 111 (143)
T 2l1u_A 92 MEVVCKQCEAHLGHVFPDGP 111 (143)
T ss_dssp EEEEESSSCCCCEEEECCSS
T ss_pred EEEEECCCCCcCCcccCCCC
Confidence 44689999999988766554
No 33
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=25.61 E-value=9.6 Score=18.20 Aligned_cols=8 Identities=25% Similarity=0.949 Sum_probs=5.2
Q ss_pred EEeeeCCC
Q 036084 18 KGGCRCRK 25 (126)
Q Consensus 18 ~GsC~CGa 25 (126)
+|+|+||.
T Consensus 8 tgtC~Cg~ 15 (26)
T 1t2y_A 8 ASSCNCGS 15 (26)
T ss_dssp TTTCCCSS
T ss_pred CccccCCC
Confidence 46777773
No 34
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=25.55 E-value=28 Score=23.75 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=14.9
Q ss_pred eeeeCCcCCcccccCCCCCC
Q 036084 82 KHVFCKVCGITSFYVPRGTP 101 (126)
Q Consensus 82 ~r~FC~~CGs~l~~~~~~~p 101 (126)
+-..|.+||++|.+...+.|
T Consensus 98 tEV~C~~Cg~HLGHVF~DGP 117 (154)
T 3hcj_A 98 TEIVCARCDSHLGHVFPDGP 117 (154)
T ss_dssp EEEEETTTCCEEEEEESCSC
T ss_pred EEEEeCCCCCccCCccCCCC
Confidence 44689999999987655543
No 35
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=25.35 E-value=55 Score=20.85 Aligned_cols=17 Identities=29% Similarity=0.182 Sum_probs=13.6
Q ss_pred eeeeeCCcCCcccccCC
Q 036084 81 AKHVFCKVCGITSFYVP 97 (126)
Q Consensus 81 ~~r~FC~~CGs~l~~~~ 97 (126)
.+-..|.+||++|.+..
T Consensus 59 RtEV~C~~C~~HLGHVF 75 (105)
T 3mao_A 59 ALKVSCGKCGNGLGHEF 75 (105)
T ss_dssp EEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCCCccCccc
Confidence 35568999999998765
No 36
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=23.66 E-value=32 Score=20.17 Aligned_cols=16 Identities=13% Similarity=0.403 Sum_probs=13.3
Q ss_pred eeeeeCCcCCcccccC
Q 036084 81 AKHVFCKVCGITSFYV 96 (126)
Q Consensus 81 ~~r~FC~~CGs~l~~~ 96 (126)
+.-++|+.||..+|..
T Consensus 34 Vp~~~C~~CGE~~~~~ 49 (78)
T 3ga8_A 34 IHGLYCVHCEESIMNK 49 (78)
T ss_dssp EEEEEETTTCCEECCH
T ss_pred ceeEECCCCCCEEECH
Confidence 5667999999998864
No 37
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=23.48 E-value=24 Score=21.69 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=9.9
Q ss_pred eCCcCCcccccC
Q 036084 85 FCKVCGITSFYV 96 (126)
Q Consensus 85 FC~~CGs~l~~~ 96 (126)
-||.||.+|-+.
T Consensus 10 ~~PlCG~~L~W~ 21 (95)
T 2k5c_A 10 KCPICGSPLKWE 21 (95)
T ss_dssp ECSSSCCEECHH
T ss_pred cCCcCCCccCHH
Confidence 599999998654
No 38
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=23.15 E-value=35 Score=18.22 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=12.2
Q ss_pred eeeeeCCcCCcccccC
Q 036084 81 AKHVFCKVCGITSFYV 96 (126)
Q Consensus 81 ~~r~FC~~CGs~l~~~ 96 (126)
....-|..||.||...
T Consensus 15 ~~YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 15 IQYRVCEKCGKPLALT 30 (44)
T ss_dssp CCEEECTTTCCEEETT
T ss_pred ccchhhcccCCcchHH
Confidence 4556799999998653
No 39
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.60 E-value=30 Score=19.00 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=10.3
Q ss_pred eeeeCCcCCccc
Q 036084 82 KHVFCKVCGITS 93 (126)
Q Consensus 82 ~r~FC~~CGs~l 93 (126)
.++.|++|+..-
T Consensus 11 ~~~~CPrCn~~f 22 (49)
T 2e72_A 11 GRKICPRCNAQF 22 (49)
T ss_dssp SCCCCTTTCCCC
T ss_pred CceeCCcccccc
Confidence 788999999874
No 40
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=22.47 E-value=31 Score=21.71 Aligned_cols=16 Identities=25% Similarity=0.877 Sum_probs=13.1
Q ss_pred eeeeeCCcCCcccccC
Q 036084 81 AKHVFCKVCGITSFYV 96 (126)
Q Consensus 81 ~~r~FC~~CGs~l~~~ 96 (126)
..+..|+.||...|+.
T Consensus 14 KtH~lCrRCG~~sfH~ 29 (97)
T 2zkr_2 14 KTHTLCRRCGSKAYHL 29 (97)
T ss_dssp CCEECCTTTCSSCEET
T ss_pred CCCCcCCCCCCccCcC
Confidence 5677899999988865
No 41
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=22.20 E-value=47 Score=25.26 Aligned_cols=20 Identities=15% Similarity=-0.096 Sum_probs=15.2
Q ss_pred eeeeCCcCCcccccCCCCCC
Q 036084 82 KHVFCKVCGITSFYVPRGTP 101 (126)
Q Consensus 82 ~r~FC~~CGs~l~~~~~~~p 101 (126)
+-..|.+||++|.+...+.|
T Consensus 257 tEv~c~~c~~HLGHVF~DGp 276 (313)
T 3e0m_A 257 IEVRSRSGSAHLGHVFTDGP 276 (313)
T ss_dssp EEEEESSSCCEEEEEESCSC
T ss_pred EEEECCCCCCccCcccCCCC
Confidence 34689999999987665544
No 42
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=22.04 E-value=46 Score=22.93 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=15.3
Q ss_pred eeeeCCcCCcccccCCCCCC
Q 036084 82 KHVFCKVCGITSFYVPRGTP 101 (126)
Q Consensus 82 ~r~FC~~CGs~l~~~~~~~p 101 (126)
+-..|.+||++|.....+.|
T Consensus 121 tEV~C~~Cg~HLGHVF~DGP 140 (164)
T 3cxk_A 121 VEVRCNQCGAHLGHVFEDGP 140 (164)
T ss_dssp EEEEETTTCCEEEEEESCSC
T ss_pred EEEEeCCCCCccCcccCCCC
Confidence 34579999999987766555
No 43
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=21.41 E-value=37 Score=21.43 Aligned_cols=16 Identities=13% Similarity=0.403 Sum_probs=13.2
Q ss_pred eeeeeCCcCCcccccC
Q 036084 81 AKHVFCKVCGITSFYV 96 (126)
Q Consensus 81 ~~r~FC~~CGs~l~~~ 96 (126)
+.-++|..||..++..
T Consensus 34 v~~~~C~~CGE~~~d~ 49 (133)
T 3o9x_A 34 IHGLYCVHCEESIMNK 49 (133)
T ss_dssp EEEEEESSSSCEECCH
T ss_pred CceeECCCCCCEeecH
Confidence 4678999999998764
No 44
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=21.36 E-value=35 Score=22.58 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=23.5
Q ss_pred CceeEEeeeCCCeEEEEEcCCCCeeeeecChhhhcC
Q 036084 14 SGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMR 49 (126)
Q Consensus 14 ~~~~~GsC~CGaV~~~v~~~p~~~~~~ChC~~Crk~ 49 (126)
...+.-.|.||. .|.+..+.......-.|..|.++
T Consensus 108 ~~~f~~~CrCG~-~f~i~~~~l~~~~~v~C~sCSl~ 142 (155)
T 2l6l_A 108 DHSFYLSCRCGG-KYSVSKDEAEEVSLISCDTCSLI 142 (155)
T ss_dssp TTEEEEECSSSC-EEEEETTHHHHCCEEECSSSSCE
T ss_pred CcEEEEcCCCCC-eEEecHHHhCCCCEEECCCCceE
Confidence 456889999996 58888664321135667888764
No 45
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.16 E-value=34 Score=18.15 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=10.5
Q ss_pred eeeCCcCCc-ccccCC
Q 036084 83 HVFCKVCGI-TSFYVP 97 (126)
Q Consensus 83 r~FC~~CGs-~l~~~~ 97 (126)
...|++||. .|-+..
T Consensus 5 ~~~CP~C~~~~l~~d~ 20 (50)
T 1pft_A 5 QKVCPACESAELIYDP 20 (50)
T ss_dssp CCSCTTTSCCCEEEET
T ss_pred cEeCcCCCCcceEEcC
Confidence 346999999 665443
No 46
>3j21_j 50S ribosomal protein L44E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.70 E-value=42 Score=20.96 Aligned_cols=16 Identities=13% Similarity=0.438 Sum_probs=12.6
Q ss_pred eeeeeCCcCCcccccC
Q 036084 81 AKHVFCKVCGITSFYV 96 (126)
Q Consensus 81 ~~r~FC~~CGs~l~~~ 96 (126)
..+.||+.|+.+--+.
T Consensus 6 ~~~tyC~~C~kHt~Hk 21 (94)
T 3j21_j 6 QIRTYCPFCKKHTIHK 21 (94)
T ss_dssp EEEECCTTTTSCEEEE
T ss_pred eeeecCcCCCCCcceE
Confidence 4678999999986554
No 47
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=20.51 E-value=17 Score=18.33 Aligned_cols=9 Identities=22% Similarity=0.685 Sum_probs=6.9
Q ss_pred ecChhhhcC
Q 036084 41 CNCSDCSMR 49 (126)
Q Consensus 41 ChC~~Crk~ 49 (126)
=||+.|.|.
T Consensus 10 qhcrfckkk 18 (37)
T 2elu_A 10 QHCRFCKKK 18 (37)
T ss_dssp CEETTTTEE
T ss_pred HHHHHHHHH
Confidence 488999864
No 48
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=20.49 E-value=97 Score=20.28 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=13.2
Q ss_pred eeeeCCcCCcccccCC
Q 036084 82 KHVFCKVCGITSFYVP 97 (126)
Q Consensus 82 ~r~FC~~CGs~l~~~~ 97 (126)
+-..|.+||++|....
T Consensus 67 tEV~C~~Cg~HLGHVF 82 (124)
T 2kao_A 67 LKVSCGKCGNGLGHEF 82 (124)
T ss_dssp EEEECTTTTCCCEEEC
T ss_pred EEEEeCCCCCcCCccC
Confidence 5568999999997765
Done!