Query 036086
Match_columns 355
No_of_seqs 245 out of 2188
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 09:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-52 3.3E-57 434.8 23.9 337 10-352 6-430 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1.5E-39 3.3E-44 302.3 9.3 224 124-351 2-268 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.4E-32 3E-37 297.7 19.2 219 124-349 190-453 (1153)
4 TIGR03015 pepcterm_ATPase puta 99.1 6.8E-09 1.5E-13 95.4 18.0 180 124-308 25-239 (269)
5 PF05729 NACHT: NACHT domain 99.0 3.4E-09 7.4E-14 89.6 10.0 131 142-275 1-162 (166)
6 PRK04841 transcriptional regul 98.9 1.9E-08 4E-13 107.9 16.6 204 125-341 17-272 (903)
7 PRK06893 DNA replication initi 98.9 3.5E-09 7.6E-14 95.3 9.0 149 141-303 39-199 (229)
8 PF13173 AAA_14: AAA domain 98.9 6.6E-09 1.4E-13 84.8 8.4 121 141-268 2-127 (128)
9 PRK00411 cdc6 cell division co 98.8 7.2E-08 1.6E-12 93.7 14.1 182 124-308 36-256 (394)
10 PRK13342 recombination factor 98.8 1.3E-07 2.9E-12 92.5 14.1 161 130-304 27-193 (413)
11 COG2256 MGS1 ATPase related to 98.7 1.3E-07 2.8E-12 89.1 12.6 125 138-274 45-174 (436)
12 PF01637 Arch_ATPase: Archaeal 98.7 2.7E-08 5.9E-13 88.8 7.9 173 124-306 5-233 (234)
13 PRK05564 DNA polymerase III su 98.7 1.5E-06 3.3E-11 81.9 17.3 170 125-304 11-187 (313)
14 TIGR03420 DnaA_homol_Hda DnaA 98.6 3.7E-07 8.1E-12 81.6 11.4 164 124-304 23-198 (226)
15 cd01128 rho_factor Transcripti 98.6 1.6E-07 3.5E-12 85.2 8.9 72 141-213 16-113 (249)
16 TIGR02903 spore_lon_C ATP-depe 98.6 2.4E-06 5.3E-11 87.4 17.8 179 124-308 160-396 (615)
17 PRK09376 rho transcription ter 98.6 9.4E-08 2E-12 90.9 6.7 69 142-213 170-266 (416)
18 cd00009 AAA The AAA+ (ATPases 98.6 9.7E-07 2.1E-11 72.2 11.5 115 126-245 6-131 (151)
19 PRK00080 ruvB Holliday junctio 98.6 5.8E-07 1.3E-11 85.3 11.5 166 124-304 31-219 (328)
20 TIGR00635 ruvB Holliday juncti 98.5 5.4E-07 1.2E-11 84.5 10.9 166 124-304 10-198 (305)
21 PRK06645 DNA polymerase III su 98.5 4.9E-06 1.1E-10 82.9 16.6 171 125-301 28-223 (507)
22 TIGR00678 holB DNA polymerase 98.5 6.2E-06 1.3E-10 71.7 15.3 160 130-302 4-186 (188)
23 PRK07003 DNA polymerase III su 98.5 5.6E-06 1.2E-10 84.8 16.3 177 124-306 22-220 (830)
24 PRK14963 DNA polymerase III su 98.5 5.8E-06 1.2E-10 82.6 16.0 178 125-308 21-219 (504)
25 PRK13341 recombination factor 98.4 3E-06 6.5E-11 87.8 14.2 148 139-300 50-210 (725)
26 PRK14961 DNA polymerase III su 98.4 9.4E-06 2E-10 78.1 16.4 173 124-302 22-215 (363)
27 PRK12323 DNA polymerase III su 98.4 5.8E-06 1.3E-10 83.5 15.1 174 124-303 22-221 (700)
28 PRK12402 replication factor C 98.4 7.2E-06 1.6E-10 77.8 14.7 171 124-301 21-220 (337)
29 TIGR02928 orc1/cdc6 family rep 98.4 4.8E-06 1E-10 80.0 13.6 182 124-307 21-247 (365)
30 PF05496 RuvB_N: Holliday junc 98.4 4.2E-06 9.1E-11 73.9 11.4 159 138-310 47-225 (233)
31 PRK08727 hypothetical protein; 98.4 3.1E-06 6.7E-11 76.4 10.7 145 142-301 42-198 (233)
32 KOG2028 ATPase related to the 98.3 2.5E-06 5.4E-11 79.5 8.9 125 138-274 159-292 (554)
33 PRK14949 DNA polymerase III su 98.3 1.7E-05 3.7E-10 82.7 15.9 171 125-301 23-214 (944)
34 PRK08084 DNA replication initi 98.3 9.1E-06 2E-10 73.4 12.3 148 141-303 45-205 (235)
35 PLN03025 replication factor C 98.3 1.9E-05 4.1E-10 74.7 14.8 176 125-308 20-202 (319)
36 PRK14957 DNA polymerase III su 98.3 2.5E-05 5.5E-10 78.4 16.3 178 124-307 22-221 (546)
37 PRK14962 DNA polymerase III su 98.3 2.8E-05 6E-10 77.1 15.8 164 141-309 36-221 (472)
38 PRK14960 DNA polymerase III su 98.3 2.9E-05 6.4E-10 78.7 15.9 172 124-301 21-213 (702)
39 PRK09087 hypothetical protein; 98.3 7.6E-06 1.7E-10 73.4 10.6 138 141-304 44-192 (226)
40 PRK04195 replication factor C 98.3 1.8E-05 3.9E-10 79.1 14.3 166 124-301 20-196 (482)
41 PRK00440 rfc replication facto 98.3 3.5E-05 7.6E-10 72.5 15.5 172 124-303 23-199 (319)
42 PRK14956 DNA polymerase III su 98.2 4.1E-05 8.8E-10 75.3 15.1 177 125-307 25-223 (484)
43 TIGR00767 rho transcription te 98.2 4.8E-06 1E-10 79.7 8.3 69 142-213 169-265 (415)
44 PF13401 AAA_22: AAA domain; P 98.2 1.3E-06 2.9E-11 70.9 3.5 101 140-243 3-125 (131)
45 PRK14964 DNA polymerase III su 98.2 6.6E-05 1.4E-09 74.5 15.9 156 141-301 35-211 (491)
46 TIGR02397 dnaX_nterm DNA polym 98.2 9.7E-05 2.1E-09 70.7 16.8 173 124-303 20-214 (355)
47 PRK14951 DNA polymerase III su 98.2 6E-05 1.3E-09 76.7 15.9 172 124-301 22-219 (618)
48 PRK14969 DNA polymerase III su 98.2 5.6E-05 1.2E-09 76.1 15.5 172 124-301 22-214 (527)
49 PRK07994 DNA polymerase III su 98.2 5.5E-05 1.2E-09 77.3 15.5 172 124-301 22-214 (647)
50 PRK09112 DNA polymerase III su 98.1 0.00019 4.2E-09 68.5 17.9 173 124-304 29-237 (351)
51 COG1373 Predicted ATPase (AAA+ 98.1 9.1E-05 2E-09 72.1 15.8 118 143-271 39-162 (398)
52 PRK14958 DNA polymerase III su 98.1 7.3E-05 1.6E-09 74.9 15.5 172 124-301 22-214 (509)
53 PRK14955 DNA polymerase III su 98.1 5.7E-05 1.2E-09 73.6 14.3 171 125-302 23-223 (397)
54 PRK06620 hypothetical protein; 98.1 2.8E-05 6.1E-10 69.1 11.1 132 142-301 45-183 (214)
55 PRK07940 DNA polymerase III su 98.1 0.00015 3.3E-09 70.3 16.9 153 141-304 36-210 (394)
56 PRK05642 DNA replication initi 98.1 2.8E-05 6.2E-10 70.1 10.9 149 141-303 45-204 (234)
57 PRK08691 DNA polymerase III su 98.1 0.00012 2.5E-09 75.0 15.7 172 124-301 22-214 (709)
58 PRK05896 DNA polymerase III su 98.0 0.00016 3.4E-09 73.2 15.9 178 124-308 22-222 (605)
59 PRK11331 5-methylcytosine-spec 98.0 5.4E-05 1.2E-09 73.7 12.1 101 124-228 181-298 (459)
60 COG2909 MalT ATP-dependent tra 98.0 0.00013 2.9E-09 74.9 14.5 204 124-340 21-277 (894)
61 PRK14959 DNA polymerase III su 98.0 0.00032 6.9E-09 71.3 17.1 175 127-308 25-222 (624)
62 PRK14970 DNA polymerase III su 98.0 0.00023 5E-09 68.6 15.6 172 124-301 23-203 (367)
63 PRK14087 dnaA chromosomal repl 98.0 5.9E-05 1.3E-09 74.5 11.6 155 141-303 141-315 (450)
64 PRK09111 DNA polymerase III su 98.0 0.00023 4.9E-09 72.6 16.0 173 124-302 30-228 (598)
65 TIGR01242 26Sp45 26S proteasom 98.0 8.4E-05 1.8E-09 71.6 12.2 166 124-301 128-328 (364)
66 PRK08903 DnaA regulatory inact 98.0 8.3E-05 1.8E-09 66.6 11.3 147 140-304 41-196 (227)
67 PRK07764 DNA polymerase III su 98.0 0.00021 4.6E-09 75.3 15.8 171 124-301 21-215 (824)
68 PRK07471 DNA polymerase III su 98.0 0.00057 1.2E-08 65.7 17.3 171 124-304 25-235 (365)
69 PHA02544 44 clamp loader, smal 97.9 0.00021 4.6E-09 67.3 14.2 141 124-273 27-170 (316)
70 PRK05707 DNA polymerase III su 97.9 0.00063 1.4E-08 64.4 17.1 158 138-304 19-200 (328)
71 PRK14952 DNA polymerase III su 97.9 0.0004 8.6E-09 70.5 16.6 171 124-301 19-213 (584)
72 PRK14954 DNA polymerase III su 97.9 0.00045 9.7E-09 70.6 16.0 170 125-301 23-222 (620)
73 TIGR02880 cbbX_cfxQ probable R 97.9 6.8E-05 1.5E-09 69.7 9.2 128 143-276 60-208 (284)
74 PRK14971 DNA polymerase III su 97.9 0.0005 1.1E-08 70.5 16.2 171 124-301 23-216 (614)
75 PRK14950 DNA polymerase III su 97.9 0.00069 1.5E-08 69.3 16.9 172 124-302 22-216 (585)
76 PF04665 Pox_A32: Poxvirus A32 97.9 0.0001 2.2E-09 66.3 9.5 37 142-180 14-50 (241)
77 PF00004 AAA: ATPase family as 97.8 3.8E-05 8.3E-10 62.1 6.0 95 144-243 1-111 (132)
78 PRK08451 DNA polymerase III su 97.8 0.00088 1.9E-08 67.2 16.6 171 124-301 20-212 (535)
79 TIGR02881 spore_V_K stage V sp 97.8 0.00019 4.2E-09 65.8 11.0 133 140-276 41-191 (261)
80 PRK14953 DNA polymerase III su 97.8 0.0015 3.3E-08 65.2 17.4 172 124-301 22-214 (486)
81 PRK00149 dnaA chromosomal repl 97.8 9.3E-05 2E-09 73.4 8.6 130 140-277 147-294 (450)
82 PRK07133 DNA polymerase III su 97.8 0.001 2.2E-08 68.7 16.1 171 124-301 24-213 (725)
83 CHL00181 cbbX CbbX; Provisiona 97.8 0.00027 5.8E-09 65.8 11.0 128 143-276 61-209 (287)
84 TIGR00362 DnaA chromosomal rep 97.7 0.00014 3E-09 71.1 9.2 129 141-277 136-282 (405)
85 KOG0989 Replication factor C, 97.7 0.00019 4.1E-09 65.8 9.2 176 126-308 44-232 (346)
86 PRK06647 DNA polymerase III su 97.7 0.0018 3.8E-08 65.8 16.9 171 124-301 22-214 (563)
87 PRK12422 chromosomal replicati 97.7 8.7E-05 1.9E-09 73.2 7.2 128 141-276 141-284 (445)
88 PRK14088 dnaA chromosomal repl 97.7 0.0001 2.2E-09 72.7 7.4 130 141-277 130-277 (440)
89 PTZ00112 origin recognition co 97.7 0.0007 1.5E-08 70.5 13.5 181 124-308 761-983 (1164)
90 PRK08118 topology modulation p 97.7 3.2E-05 6.9E-10 66.1 3.3 61 143-213 3-68 (167)
91 PF00308 Bac_DnaA: Bacterial d 97.7 4.9E-05 1.1E-09 67.9 4.4 150 138-301 31-202 (219)
92 smart00382 AAA ATPases associa 97.6 0.00024 5.2E-09 57.2 7.9 72 142-215 3-90 (148)
93 PRK06305 DNA polymerase III su 97.6 0.0022 4.7E-08 63.5 15.6 171 124-301 23-216 (451)
94 PRK08116 hypothetical protein; 97.6 0.0002 4.4E-09 65.9 7.8 92 143-244 116-221 (268)
95 PRK14965 DNA polymerase III su 97.6 0.0025 5.4E-08 65.1 16.2 171 124-301 22-214 (576)
96 PRK08058 DNA polymerase III su 97.6 0.0032 6.9E-08 59.8 16.0 134 139-275 26-181 (329)
97 PF13191 AAA_16: AAA ATPase do 97.6 0.00011 2.4E-09 63.1 5.2 42 124-165 6-48 (185)
98 PRK08181 transposase; Validate 97.5 0.00013 2.8E-09 67.1 5.4 91 143-244 108-209 (269)
99 PRK05563 DNA polymerase III su 97.5 0.004 8.7E-08 63.3 16.5 171 124-301 22-214 (559)
100 PRK03992 proteasome-activating 97.5 0.001 2.3E-08 64.6 11.3 166 124-301 137-337 (389)
101 PRK14086 dnaA chromosomal repl 97.5 0.00083 1.8E-08 68.1 10.7 129 141-277 314-460 (617)
102 PRK12377 putative replication 97.5 0.00027 5.8E-09 64.2 6.4 97 141-243 101-205 (248)
103 PRK14948 DNA polymerase III su 97.4 0.0064 1.4E-07 62.5 16.9 173 124-302 22-217 (620)
104 COG0542 clpA ATP-binding subun 97.4 0.0034 7.5E-08 65.1 14.7 88 138-230 518-620 (786)
105 PHA00729 NTP-binding motif con 97.4 0.0021 4.5E-08 57.3 11.5 33 130-164 8-40 (226)
106 TIGR02639 ClpA ATP-dependent C 97.4 0.0011 2.3E-08 69.8 11.3 102 124-230 460-580 (731)
107 PRK09183 transposase/IS protei 97.4 0.00019 4.1E-09 65.8 4.9 91 142-243 103-205 (259)
108 cd01133 F1-ATPase_beta F1 ATP 97.4 0.00043 9.3E-09 63.5 7.0 41 142-184 70-111 (274)
109 COG0593 DnaA ATPase involved i 97.4 0.00046 1E-08 66.6 7.4 134 138-277 110-258 (408)
110 PRK06526 transposase; Provisio 97.4 0.00015 3.2E-09 66.2 3.6 91 142-244 99-201 (254)
111 CHL00176 ftsH cell division pr 97.3 0.0041 8.9E-08 64.0 14.1 144 124-276 192-366 (638)
112 COG3903 Predicted ATPase [Gene 97.3 0.00017 3.6E-09 68.7 3.6 159 140-308 13-190 (414)
113 COG1474 CDC6 Cdc6-related prot 97.3 0.0049 1.1E-07 59.2 13.6 181 124-308 23-239 (366)
114 PRK08769 DNA polymerase III su 97.3 0.015 3.3E-07 54.8 16.6 169 125-304 11-205 (319)
115 PRK07261 topology modulation p 97.3 0.00049 1.1E-08 59.0 5.8 65 143-213 2-67 (171)
116 CHL00095 clpC Clp protease ATP 97.3 0.0066 1.4E-07 64.7 15.5 118 124-243 515-661 (821)
117 PF01695 IstB_IS21: IstB-like 97.3 0.00023 4.9E-09 61.5 3.6 89 141-244 47-150 (178)
118 PRK06921 hypothetical protein; 97.3 0.00044 9.5E-09 63.6 5.7 96 141-243 117-224 (266)
119 PRK06871 DNA polymerase III su 97.3 0.019 4.1E-07 54.3 16.7 167 126-304 10-200 (325)
120 KOG0735 AAA+-type ATPase [Post 97.2 0.0025 5.3E-08 64.6 10.8 71 142-213 432-504 (952)
121 KOG0741 AAA+-type ATPase [Post 97.2 0.0048 1E-07 60.6 12.4 148 139-297 536-704 (744)
122 PF13177 DNA_pol3_delta2: DNA 97.2 0.0038 8.2E-08 53.0 10.5 133 128-264 7-162 (162)
123 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0032 7E-08 57.8 10.8 79 144-228 24-130 (262)
124 PRK06090 DNA polymerase III su 97.2 0.031 6.8E-07 52.7 17.6 165 125-304 10-198 (319)
125 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0031 6.6E-08 67.2 11.6 146 124-275 193-362 (852)
126 PRK07952 DNA replication prote 97.2 0.0011 2.3E-08 60.2 7.0 94 141-243 99-204 (244)
127 PRK10536 hypothetical protein; 97.2 0.0049 1.1E-07 56.0 11.2 37 124-164 61-97 (262)
128 COG2255 RuvB Holliday junction 97.2 0.0021 4.6E-08 58.5 8.8 157 138-308 49-225 (332)
129 TIGR02639 ClpA ATP-dependent C 97.2 0.0046 1E-07 65.0 12.6 141 124-275 188-357 (731)
130 PF13207 AAA_17: AAA domain; P 97.2 0.0003 6.4E-09 56.2 2.8 21 143-163 1-21 (121)
131 TIGR01241 FtsH_fam ATP-depende 97.1 0.0088 1.9E-07 60.1 13.8 126 142-276 89-238 (495)
132 cd01131 PilT Pilus retraction 97.1 0.0022 4.8E-08 56.3 8.4 99 142-249 2-114 (198)
133 PRK06964 DNA polymerase III su 97.1 0.027 5.8E-07 53.7 16.2 92 201-304 130-222 (342)
134 PTZ00454 26S protease regulato 97.1 0.0059 1.3E-07 59.4 11.9 150 140-301 178-351 (398)
135 PRK10865 protein disaggregatio 97.1 0.0042 9E-08 66.4 11.7 88 141-230 598-697 (857)
136 TIGR03689 pup_AAA proteasome A 97.1 0.0018 4E-08 64.6 8.4 134 141-276 216-378 (512)
137 PTZ00202 tuzin; Provisional 97.1 0.05 1.1E-06 53.1 17.6 137 124-273 268-431 (550)
138 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0029 6.2E-08 67.6 10.2 115 124-243 571-717 (852)
139 PRK07993 DNA polymerase III su 97.1 0.05 1.1E-06 51.8 17.5 168 125-304 9-201 (334)
140 PF07728 AAA_5: AAA domain (dy 97.1 0.00052 1.1E-08 56.4 3.5 79 144-228 2-90 (139)
141 TIGR00763 lon ATP-dependent pr 97.1 0.027 5.8E-07 59.8 17.0 145 124-275 326-504 (775)
142 PF02562 PhoH: PhoH-like prote 97.1 0.0021 4.6E-08 56.5 7.4 109 126-242 8-154 (205)
143 PRK08939 primosomal protein Dn 97.0 0.0011 2.5E-08 62.1 6.0 95 141-243 156-260 (306)
144 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0038 8.2E-08 56.0 9.1 50 140-189 18-71 (235)
145 CHL00095 clpC Clp protease ATP 97.0 0.0043 9.4E-08 66.1 10.7 140 124-274 185-352 (821)
146 PRK10787 DNA-binding ATP-depen 97.0 0.0035 7.6E-08 66.1 9.7 146 124-276 328-506 (784)
147 COG3899 Predicted ATPase [Gene 97.0 0.0098 2.1E-07 63.4 13.1 104 201-308 152-261 (849)
148 PRK06835 DNA replication prote 97.0 0.0011 2.4E-08 62.8 5.3 94 142-243 184-288 (329)
149 cd01120 RecA-like_NTPases RecA 97.0 0.0039 8.5E-08 51.9 8.2 40 143-184 1-40 (165)
150 PRK06696 uridine kinase; Valid 97.0 0.0011 2.3E-08 59.4 4.9 38 126-163 6-44 (223)
151 PF00910 RNA_helicase: RNA hel 97.0 0.003 6.4E-08 49.6 6.8 20 144-163 1-20 (107)
152 PRK07399 DNA polymerase III su 96.9 0.046 1E-06 51.5 16.0 170 127-304 13-218 (314)
153 PRK11034 clpA ATP-dependent Cl 96.9 0.0072 1.6E-07 63.4 11.4 142 124-275 192-361 (758)
154 TIGR02237 recomb_radB DNA repa 96.9 0.0027 5.9E-08 55.9 7.2 48 140-190 11-58 (209)
155 COG2884 FtsE Predicted ATPase 96.9 0.0048 1.1E-07 53.1 8.1 57 195-253 147-205 (223)
156 PF13604 AAA_30: AAA domain; P 96.9 0.0021 4.6E-08 56.3 6.2 104 128-239 7-126 (196)
157 TIGR03345 VI_ClpV1 type VI sec 96.9 0.005 1.1E-07 65.6 10.1 102 124-230 572-695 (852)
158 PTZ00361 26 proteosome regulat 96.9 0.0074 1.6E-07 59.3 10.2 131 140-276 216-367 (438)
159 PRK04132 replication factor C 96.9 0.031 6.8E-07 59.1 15.3 154 149-308 574-733 (846)
160 PRK09361 radB DNA repair and r 96.9 0.0033 7.2E-08 56.1 7.2 46 140-188 22-67 (225)
161 TIGR00602 rad24 checkpoint pro 96.8 0.022 4.8E-07 58.5 13.8 41 124-164 90-133 (637)
162 PRK07667 uridine kinase; Provi 96.8 0.0016 3.4E-08 56.9 4.7 37 127-163 3-39 (193)
163 cd03216 ABC_Carb_Monos_I This 96.8 0.015 3.3E-07 49.2 10.7 102 142-248 27-146 (163)
164 PRK12608 transcription termina 96.8 0.004 8.6E-08 59.5 7.6 84 125-213 118-230 (380)
165 COG1136 SalX ABC-type antimicr 96.8 0.0085 1.8E-07 53.4 9.2 22 142-163 32-53 (226)
166 PRK13695 putative NTPase; Prov 96.8 0.0027 5.8E-08 54.4 5.8 22 143-164 2-23 (174)
167 cd01393 recA_like RecA is a b 96.7 0.0085 1.8E-07 53.4 8.8 48 140-189 18-71 (226)
168 PRK08699 DNA polymerase III su 96.7 0.026 5.6E-07 53.5 12.3 133 139-275 19-184 (325)
169 PRK05703 flhF flagellar biosyn 96.7 0.21 4.5E-06 49.1 18.9 22 142-163 222-243 (424)
170 PRK04296 thymidine kinase; Pro 96.7 0.0062 1.3E-07 53.1 7.4 98 142-245 3-117 (190)
171 COG0470 HolB ATPase involved i 96.7 0.025 5.5E-07 53.1 12.0 139 124-264 7-169 (325)
172 PTZ00301 uridine kinase; Provi 96.6 0.0023 5E-08 56.7 4.2 23 141-163 3-25 (210)
173 cd03247 ABCC_cytochrome_bd The 96.6 0.015 3.2E-07 50.0 9.1 105 142-248 29-161 (178)
174 cd03230 ABC_DR_subfamily_A Thi 96.6 0.014 3.1E-07 49.8 8.9 106 142-249 27-160 (173)
175 PF08423 Rad51: Rad51; InterP 96.6 0.0053 1.2E-07 56.1 6.5 49 142-190 39-91 (256)
176 KOG2004 Mitochondrial ATP-depe 96.6 0.056 1.2E-06 55.3 14.0 84 124-213 417-515 (906)
177 COG1484 DnaC DNA replication p 96.6 0.0036 7.9E-08 57.1 5.3 73 140-221 104-185 (254)
178 TIGR02902 spore_lonB ATP-depen 96.6 0.022 4.8E-07 57.6 11.4 150 124-276 71-276 (531)
179 PRK04301 radA DNA repair and r 96.5 0.013 2.8E-07 55.4 9.1 51 140-190 101-155 (317)
180 PF13671 AAA_33: AAA domain; P 96.5 0.0018 3.9E-08 53.2 2.9 21 143-163 1-21 (143)
181 cd01878 HflX HflX subfamily. 96.5 0.086 1.9E-06 46.0 13.8 57 87-165 9-65 (204)
182 COG0466 Lon ATP-dependent Lon 96.5 0.0066 1.4E-07 61.8 7.2 147 124-277 329-509 (782)
183 TIGR02858 spore_III_AA stage I 96.5 0.061 1.3E-06 49.5 13.1 115 125-249 96-234 (270)
184 cd03238 ABC_UvrA The excision 96.5 0.016 3.4E-07 49.9 8.7 100 142-248 22-153 (176)
185 cd03214 ABC_Iron-Siderophores_ 96.5 0.027 5.9E-07 48.4 10.3 104 142-249 26-163 (180)
186 PRK05480 uridine/cytidine kina 96.5 0.0021 4.6E-08 56.7 3.4 25 139-163 4-28 (209)
187 PF00485 PRK: Phosphoribulokin 96.5 0.0018 3.9E-08 56.6 2.8 21 143-163 1-21 (194)
188 cd03228 ABCC_MRP_Like The MRP 96.5 0.024 5.2E-07 48.3 9.7 103 142-248 29-159 (171)
189 PRK11889 flhF flagellar biosyn 96.5 0.044 9.5E-07 52.9 12.2 24 140-163 240-263 (436)
190 PRK13540 cytochrome c biogenes 96.5 0.022 4.7E-07 49.9 9.6 23 142-164 28-50 (200)
191 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.039 8.5E-07 45.7 10.6 99 142-249 27-132 (144)
192 cd03263 ABC_subfamily_A The AB 96.5 0.023 5E-07 50.4 9.8 22 142-163 29-50 (220)
193 PLN00020 ribulose bisphosphate 96.5 0.0061 1.3E-07 58.0 6.2 70 139-213 146-222 (413)
194 PRK06995 flhF flagellar biosyn 96.5 0.29 6.4E-06 48.7 18.1 23 141-163 256-278 (484)
195 PRK11034 clpA ATP-dependent Cl 96.4 0.0081 1.7E-07 63.1 7.6 101 124-229 464-583 (758)
196 PRK08233 hypothetical protein; 96.4 0.0025 5.4E-08 54.7 3.2 24 141-164 3-26 (182)
197 PF05621 TniB: Bacterial TniB 96.4 0.11 2.3E-06 48.3 14.0 178 124-304 43-258 (302)
198 PF00006 ATP-synt_ab: ATP synt 96.4 0.0065 1.4E-07 54.0 5.9 66 142-213 16-115 (215)
199 PF05673 DUF815: Protein of un 96.4 0.037 8.1E-07 49.8 10.6 96 124-229 33-133 (249)
200 TIGR03346 chaperone_ClpB ATP-d 96.4 0.043 9.3E-07 58.8 12.9 144 124-275 179-348 (852)
201 PF13238 AAA_18: AAA domain; P 96.4 0.0023 4.9E-08 51.3 2.6 21 144-164 1-21 (129)
202 PRK10865 protein disaggregatio 96.4 0.04 8.7E-07 59.0 12.6 38 124-163 184-221 (857)
203 cd03246 ABCC_Protease_Secretio 96.4 0.022 4.8E-07 48.7 8.8 103 142-248 29-160 (173)
204 PRK09270 nucleoside triphospha 96.4 0.0041 8.9E-08 55.8 4.5 26 138-163 30-55 (229)
205 cd00267 ABC_ATPase ABC (ATP-bi 96.4 0.027 5.8E-07 47.2 9.2 105 142-249 26-145 (157)
206 PRK06547 hypothetical protein; 96.4 0.0035 7.6E-08 53.7 3.8 27 138-164 12-38 (172)
207 COG4618 ArpD ABC-type protease 96.4 0.011 2.4E-07 58.0 7.5 22 142-163 363-384 (580)
208 COG0468 RecA RecA/RadA recombi 96.4 0.016 3.4E-07 53.5 8.2 73 139-213 58-151 (279)
209 PRK05541 adenylylsulfate kinas 96.4 0.0033 7.3E-08 53.8 3.6 36 140-177 6-41 (176)
210 cd03264 ABC_drug_resistance_li 96.4 0.034 7.4E-07 49.0 10.2 21 143-163 27-47 (211)
211 TIGR00235 udk uridine kinase. 96.4 0.003 6.5E-08 55.8 3.4 24 140-163 5-28 (207)
212 cd00983 recA RecA is a bacter 96.4 0.0064 1.4E-07 57.3 5.7 72 140-213 54-143 (325)
213 PF00448 SRP54: SRP54-type pro 96.4 0.017 3.6E-07 50.7 7.9 37 141-179 1-37 (196)
214 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.014 3E-07 52.9 7.4 22 142-163 31-52 (254)
215 cd01135 V_A-ATPase_B V/A-type 96.3 0.014 3.1E-07 53.5 7.6 49 142-190 70-121 (276)
216 KOG0731 AAA+-type ATPase conta 96.3 0.079 1.7E-06 55.0 13.6 169 124-303 320-520 (774)
217 cd03229 ABC_Class3 This class 96.3 0.023 5E-07 48.8 8.6 22 142-163 27-48 (178)
218 COG1618 Predicted nucleotide k 96.3 0.0032 6.8E-08 52.7 2.9 22 142-163 6-27 (179)
219 TIGR02324 CP_lyasePhnL phospho 96.3 0.043 9.3E-07 48.8 10.6 23 142-164 35-57 (224)
220 cd03281 ABC_MSH5_euk MutS5 hom 96.3 0.04 8.6E-07 48.9 10.2 106 141-249 29-159 (213)
221 PF14532 Sigma54_activ_2: Sigm 96.3 0.011 2.4E-07 48.5 6.2 87 142-244 22-110 (138)
222 cd03268 ABC_BcrA_bacitracin_re 96.3 0.037 8E-07 48.7 10.0 22 142-163 27-48 (208)
223 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0044 9.6E-08 58.9 4.2 41 124-164 57-101 (361)
224 cd01394 radB RadB. The archaea 96.3 0.013 2.8E-07 52.1 7.0 43 140-184 18-60 (218)
225 COG1126 GlnQ ABC-type polar am 96.3 0.035 7.5E-07 48.9 9.2 54 195-249 146-201 (240)
226 PF07693 KAP_NTPase: KAP famil 96.3 0.1 2.3E-06 49.0 13.5 38 127-164 5-43 (325)
227 PRK08972 fliI flagellum-specif 96.2 0.019 4.1E-07 56.2 8.3 66 142-213 163-262 (444)
228 cd03222 ABC_RNaseL_inhibitor T 96.2 0.058 1.3E-06 46.4 10.5 104 142-249 26-137 (177)
229 PRK06762 hypothetical protein; 96.2 0.0039 8.4E-08 52.8 3.0 23 141-163 2-24 (166)
230 TIGR02238 recomb_DMC1 meiotic 96.2 0.02 4.4E-07 53.9 7.9 51 140-190 95-149 (313)
231 COG0572 Udk Uridine kinase [Nu 96.2 0.0045 9.7E-08 54.6 3.3 25 139-163 6-30 (218)
232 TIGR02236 recomb_radA DNA repa 96.1 0.027 5.9E-07 52.9 8.9 51 140-190 94-148 (310)
233 PRK00625 shikimate kinase; Pro 96.1 0.023 5E-07 48.7 7.6 21 143-163 2-22 (173)
234 TIGR03522 GldA_ABC_ATP gliding 96.1 0.044 9.6E-07 51.3 10.2 23 142-164 29-51 (301)
235 KOG0924 mRNA splicing factor A 96.1 0.032 6.8E-07 56.5 9.4 117 124-252 358-520 (1042)
236 COG2607 Predicted ATPase (AAA+ 96.1 0.23 5E-06 44.5 13.7 81 142-230 86-167 (287)
237 cd03266 ABC_NatA_sodium_export 96.1 0.035 7.5E-07 49.2 9.0 23 142-164 32-54 (218)
238 PLN03187 meiotic recombination 96.1 0.017 3.8E-07 54.9 7.3 51 140-190 125-179 (344)
239 cd03231 ABC_CcmA_heme_exporter 96.1 0.041 8.9E-07 48.2 9.3 22 142-163 27-48 (201)
240 PRK06002 fliI flagellum-specif 96.1 0.019 4E-07 56.4 7.6 22 142-163 166-187 (450)
241 cd03265 ABC_DrrA DrrA is the A 96.1 0.039 8.5E-07 49.0 9.2 23 142-164 27-49 (220)
242 KOG0734 AAA+-type ATPase conta 96.1 0.019 4.1E-07 56.7 7.5 84 124-213 313-406 (752)
243 COG0541 Ffh Signal recognition 96.1 0.52 1.1E-05 45.8 17.0 38 126-163 78-122 (451)
244 TIGR01243 CDC48 AAA family ATP 96.1 0.041 8.8E-07 58.1 10.6 149 141-301 487-657 (733)
245 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0051 1.1E-07 53.0 3.2 24 140-163 2-25 (188)
246 TIGR02012 tigrfam_recA protein 96.1 0.014 3E-07 55.0 6.3 72 140-213 54-143 (321)
247 cd01129 PulE-GspE PulE/GspE Th 96.1 0.026 5.7E-07 51.8 8.0 95 141-248 80-188 (264)
248 KOG2543 Origin recognition com 96.1 0.03 6.5E-07 53.2 8.4 62 124-190 12-74 (438)
249 TIGR01188 drrA daunorubicin re 96.0 0.041 8.9E-07 51.5 9.5 22 142-163 20-41 (302)
250 PRK12597 F0F1 ATP synthase sub 96.0 0.014 3.1E-07 57.5 6.6 70 142-212 144-246 (461)
251 TIGR01425 SRP54_euk signal rec 96.0 0.089 1.9E-06 51.5 11.9 25 139-163 98-122 (429)
252 PRK10867 signal recognition pa 96.0 0.091 2E-06 51.6 12.1 25 139-163 98-122 (433)
253 TIGR01420 pilT_fam pilus retra 96.0 0.035 7.6E-07 53.0 9.1 100 141-249 122-235 (343)
254 cd03283 ABC_MutS-like MutS-lik 96.0 0.04 8.8E-07 48.3 8.8 105 142-249 26-153 (199)
255 cd02019 NK Nucleoside/nucleoti 96.0 0.005 1.1E-07 44.2 2.5 21 143-163 1-21 (69)
256 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.071 1.5E-06 45.0 9.8 103 142-245 3-139 (159)
257 PRK13538 cytochrome c biogenes 96.0 0.043 9.3E-07 48.2 9.0 23 142-164 28-50 (204)
258 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.0 0.071 1.5E-06 47.6 10.4 23 142-164 49-71 (224)
259 TIGR00554 panK_bact pantothena 96.0 0.011 2.3E-07 55.0 5.1 25 139-163 60-84 (290)
260 PRK08927 fliI flagellum-specif 96.0 0.027 5.9E-07 55.2 8.1 67 141-213 158-258 (442)
261 PRK08149 ATP synthase SpaL; Va 96.0 0.026 5.6E-07 55.2 7.9 23 142-164 152-174 (428)
262 PF05659 RPW8: Arabidopsis bro 96.0 0.15 3.2E-06 42.5 11.4 102 2-105 3-115 (147)
263 PRK14721 flhF flagellar biosyn 96.0 0.07 1.5E-06 52.2 10.9 23 141-163 191-213 (420)
264 PRK13531 regulatory ATPase Rav 96.0 0.036 7.8E-07 54.8 8.9 142 124-275 26-193 (498)
265 KOG0927 Predicted transporter 96.0 0.033 7.1E-07 55.2 8.4 59 192-253 228-287 (614)
266 PRK07594 type III secretion sy 95.9 0.029 6.4E-07 54.9 8.1 67 141-213 155-255 (433)
267 cd03215 ABC_Carb_Monos_II This 95.9 0.055 1.2E-06 46.6 9.1 105 142-248 27-168 (182)
268 PRK06936 type III secretion sy 95.9 0.03 6.4E-07 54.9 8.1 66 142-213 163-262 (439)
269 COG1120 FepC ABC-type cobalami 95.9 0.062 1.3E-06 48.9 9.6 23 141-163 28-50 (258)
270 cd02023 UMPK Uridine monophosp 95.9 0.0046 1E-07 54.0 2.3 21 143-163 1-21 (198)
271 KOG1532 GTPase XAB1, interacts 95.9 0.018 4E-07 52.2 6.0 27 139-165 17-43 (366)
272 PF07724 AAA_2: AAA domain (Cd 95.9 0.035 7.6E-07 47.5 7.6 84 141-229 3-105 (171)
273 TIGR03740 galliderm_ABC gallid 95.9 0.045 9.7E-07 48.7 8.6 22 142-163 27-48 (223)
274 PRK07132 DNA polymerase III su 95.9 0.45 9.7E-06 44.5 15.5 133 140-275 17-161 (299)
275 COG0396 sufC Cysteine desulfur 95.9 0.079 1.7E-06 47.1 9.7 52 202-254 161-213 (251)
276 PRK14722 flhF flagellar biosyn 95.9 0.055 1.2E-06 52.1 9.5 23 141-163 137-159 (374)
277 COG1875 NYN ribonuclease and A 95.9 0.0084 1.8E-07 56.5 3.8 31 128-160 234-264 (436)
278 PF14516 AAA_35: AAA-like doma 95.9 0.19 4.1E-06 47.7 13.2 172 128-311 21-243 (331)
279 TIGR00991 3a0901s02IAP34 GTP-b 95.9 0.13 2.8E-06 48.1 11.7 42 124-165 21-62 (313)
280 KOG2227 Pre-initiation complex 95.9 0.12 2.6E-06 50.5 11.6 183 124-306 156-371 (529)
281 cd03253 ABCC_ATM1_transporter 95.8 0.12 2.6E-06 46.3 11.3 48 200-248 152-200 (236)
282 PRK03839 putative kinase; Prov 95.8 0.0063 1.4E-07 52.3 2.8 22 143-164 2-23 (180)
283 PRK09354 recA recombinase A; P 95.8 0.02 4.4E-07 54.4 6.4 72 140-213 59-148 (349)
284 cd03244 ABCC_MRP_domain2 Domai 95.8 0.086 1.9E-06 46.7 10.1 22 142-163 31-52 (221)
285 cd02025 PanK Pantothenate kina 95.8 0.0051 1.1E-07 54.9 2.2 21 143-163 1-21 (220)
286 cd01132 F1_ATPase_alpha F1 ATP 95.8 0.031 6.7E-07 51.3 7.2 78 142-226 70-183 (274)
287 PRK12724 flagellar biosynthesi 95.8 0.049 1.1E-06 53.1 8.8 23 141-163 223-245 (432)
288 PF08433 KTI12: Chromatin asso 95.8 0.0095 2.1E-07 54.9 3.8 69 142-213 2-80 (270)
289 PRK13537 nodulation ABC transp 95.8 0.071 1.5E-06 50.1 9.8 22 142-163 34-55 (306)
290 PHA02244 ATPase-like protein 95.8 0.043 9.4E-07 52.5 8.3 107 124-243 106-230 (383)
291 cd03227 ABC_Class2 ABC-type Cl 95.8 0.07 1.5E-06 45.1 8.8 107 142-249 22-146 (162)
292 PRK06067 flagellar accessory p 95.8 0.041 9E-07 49.4 7.8 41 140-182 24-64 (234)
293 TIGR03497 FliI_clade2 flagella 95.7 0.036 7.8E-07 54.1 7.8 71 141-213 137-237 (413)
294 PRK10463 hydrogenase nickel in 95.7 0.058 1.3E-06 50.0 8.8 26 138-163 101-126 (290)
295 COG2812 DnaX DNA polymerase II 95.7 0.051 1.1E-06 54.2 8.9 147 127-276 25-191 (515)
296 TIGR02322 phosphon_PhnN phosph 95.7 0.0078 1.7E-07 51.6 2.9 23 142-164 2-24 (179)
297 PTZ00185 ATPase alpha subunit; 95.7 0.037 8.1E-07 54.9 7.8 70 142-213 190-299 (574)
298 PRK12723 flagellar biosynthesi 95.7 0.13 2.9E-06 49.8 11.6 24 140-163 173-196 (388)
299 PHA02774 E1; Provisional 95.7 0.049 1.1E-06 54.9 8.7 68 127-212 421-488 (613)
300 PRK14738 gmk guanylate kinase; 95.7 0.0093 2E-07 52.7 3.4 32 133-164 5-36 (206)
301 PRK04040 adenylate kinase; Pro 95.7 0.0081 1.8E-07 52.3 2.9 23 141-163 2-24 (188)
302 TIGR03305 alt_F1F0_F1_bet alte 95.7 0.017 3.8E-07 56.6 5.5 71 142-213 139-242 (449)
303 TIGR03263 guanyl_kin guanylate 95.7 0.0084 1.8E-07 51.4 3.0 22 142-163 2-23 (180)
304 PRK12678 transcription termina 95.7 0.029 6.2E-07 56.4 7.0 68 142-213 417-513 (672)
305 PRK10751 molybdopterin-guanine 95.7 0.0094 2E-07 51.0 3.2 24 140-163 5-28 (173)
306 cd01136 ATPase_flagellum-secre 95.7 0.052 1.1E-06 51.3 8.4 23 142-164 70-92 (326)
307 TIGR02868 CydC thiol reductant 95.7 0.069 1.5E-06 54.0 10.0 23 141-163 361-383 (529)
308 cd03223 ABCD_peroxisomal_ALDP 95.7 0.14 2.9E-06 43.5 10.4 101 142-248 28-152 (166)
309 TIGR03496 FliI_clade1 flagella 95.7 0.049 1.1E-06 53.2 8.5 66 142-213 138-237 (411)
310 CHL00195 ycf46 Ycf46; Provisio 95.7 0.054 1.2E-06 54.1 9.0 128 140-276 258-405 (489)
311 PF03205 MobB: Molybdopterin g 95.7 0.0086 1.9E-07 49.5 2.8 22 142-163 1-22 (140)
312 cd03243 ABC_MutS_homologs The 95.7 0.072 1.6E-06 46.7 8.9 105 142-252 30-158 (202)
313 COG3267 ExeA Type II secretory 95.7 0.22 4.8E-06 45.0 11.8 177 125-308 34-246 (269)
314 PRK00131 aroK shikimate kinase 95.7 0.0084 1.8E-07 50.8 2.8 23 141-163 4-26 (175)
315 cd03282 ABC_MSH4_euk MutS4 hom 95.7 0.13 2.8E-06 45.3 10.4 106 141-253 29-159 (204)
316 cd02024 NRK1 Nicotinamide ribo 95.6 0.007 1.5E-07 52.6 2.3 22 143-164 1-22 (187)
317 KOG1969 DNA replication checkp 95.6 0.066 1.4E-06 54.8 9.3 84 139-227 324-411 (877)
318 PRK10733 hflB ATP-dependent me 95.6 0.071 1.5E-06 55.3 10.0 125 143-276 187-335 (644)
319 TIGR03499 FlhF flagellar biosy 95.6 0.031 6.8E-07 51.8 6.6 24 140-163 193-216 (282)
320 cd02028 UMPK_like Uridine mono 95.6 0.0078 1.7E-07 51.9 2.4 21 143-163 1-21 (179)
321 PRK09280 F0F1 ATP synthase sub 95.6 0.028 6E-07 55.4 6.4 71 142-213 145-248 (463)
322 PF00158 Sigma54_activat: Sigm 95.6 0.13 2.7E-06 43.9 9.7 94 143-244 24-144 (168)
323 PF00154 RecA: recA bacterial 95.5 0.025 5.3E-07 53.3 5.7 47 142-190 54-100 (322)
324 PRK05688 fliI flagellum-specif 95.5 0.06 1.3E-06 53.0 8.5 22 142-163 169-190 (451)
325 cd03217 ABC_FeS_Assembly ABC-t 95.5 0.11 2.4E-06 45.5 9.5 105 142-248 27-168 (200)
326 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.0084 1.8E-07 51.6 2.3 21 143-163 1-21 (183)
327 COG4088 Predicted nucleotide k 95.5 0.056 1.2E-06 47.3 7.1 22 142-163 2-23 (261)
328 TIGR02239 recomb_RAD51 DNA rep 95.5 0.07 1.5E-06 50.4 8.6 51 139-189 94-148 (316)
329 TIGR00150 HI0065_YjeE ATPase, 95.5 0.022 4.8E-07 46.6 4.5 41 125-165 6-46 (133)
330 PRK00889 adenylylsulfate kinas 95.5 0.013 2.8E-07 50.1 3.2 24 141-164 4-27 (175)
331 PLN02318 phosphoribulokinase/u 95.5 0.019 4.2E-07 57.9 4.9 34 130-163 54-87 (656)
332 PRK06820 type III secretion sy 95.5 0.052 1.1E-06 53.3 7.8 23 142-164 164-186 (440)
333 cd02020 CMPK Cytidine monophos 95.5 0.0098 2.1E-07 48.9 2.4 21 143-163 1-21 (147)
334 PRK06217 hypothetical protein; 95.4 0.01 2.2E-07 51.3 2.6 23 143-165 3-25 (183)
335 PRK00300 gmk guanylate kinase; 95.4 0.011 2.4E-07 51.9 2.8 24 141-164 5-28 (205)
336 PF08477 Miro: Miro-like prote 95.4 0.012 2.7E-07 46.4 2.9 23 144-166 2-24 (119)
337 PRK03846 adenylylsulfate kinas 95.4 0.014 3.1E-07 51.0 3.5 26 138-163 21-46 (198)
338 TIGR01243 CDC48 AAA family ATP 95.4 0.046 1E-06 57.6 7.9 127 141-275 212-358 (733)
339 cd00071 GMPK Guanosine monopho 95.4 0.012 2.6E-07 48.4 2.8 22 143-164 1-22 (137)
340 PRK07721 fliI flagellum-specif 95.4 0.074 1.6E-06 52.4 8.7 24 140-163 157-180 (438)
341 cd03289 ABCC_CFTR2 The CFTR su 95.4 0.13 2.9E-06 47.5 10.0 22 142-163 31-52 (275)
342 cd03287 ABC_MSH3_euk MutS3 hom 95.4 0.11 2.3E-06 46.5 9.0 104 141-249 31-159 (222)
343 TIGR00959 ffh signal recogniti 95.4 0.056 1.2E-06 53.1 7.7 24 140-163 98-121 (428)
344 PF00625 Guanylate_kin: Guanyl 95.4 0.014 3E-07 50.4 3.1 35 141-177 2-36 (183)
345 PRK13545 tagH teichoic acids e 95.4 0.14 3E-06 51.5 10.5 23 142-164 51-73 (549)
346 KOG0730 AAA+-type ATPase [Post 95.4 0.056 1.2E-06 54.7 7.7 150 139-299 466-647 (693)
347 PRK05439 pantothenate kinase; 95.4 0.027 5.8E-07 52.8 5.2 26 138-163 83-108 (311)
348 PF03029 ATP_bind_1: Conserved 95.4 0.015 3.3E-07 52.5 3.5 19 146-164 1-19 (238)
349 COG0194 Gmk Guanylate kinase [ 95.3 0.019 4.2E-07 49.3 3.9 24 142-165 5-28 (191)
350 cd02021 GntK Gluconate kinase 95.3 0.011 2.4E-07 49.1 2.4 22 143-164 1-22 (150)
351 PRK09099 type III secretion sy 95.3 0.055 1.2E-06 53.2 7.6 24 141-164 163-186 (441)
352 PRK10078 ribose 1,5-bisphospho 95.3 0.014 3.1E-07 50.5 3.1 23 142-164 3-25 (186)
353 COG1124 DppF ABC-type dipeptid 95.3 0.022 4.8E-07 50.9 4.2 22 142-163 34-55 (252)
354 TIGR01288 nodI ATP-binding ABC 95.3 0.12 2.7E-06 48.3 9.6 22 142-163 31-52 (303)
355 TIGR03498 FliI_clade3 flagella 95.3 0.052 1.1E-06 53.0 7.1 23 142-164 141-163 (418)
356 PRK00279 adk adenylate kinase; 95.3 0.078 1.7E-06 47.0 7.8 21 143-163 2-22 (215)
357 PRK13536 nodulation factor exp 95.3 0.12 2.7E-06 49.2 9.6 22 142-163 68-89 (340)
358 PLN03186 DNA repair protein RA 95.2 0.081 1.8E-06 50.4 8.2 52 139-190 121-176 (342)
359 COG1131 CcmA ABC-type multidru 95.2 0.16 3.4E-06 47.5 10.0 22 142-163 32-53 (293)
360 cd01134 V_A-ATPase_A V/A-type 95.2 0.082 1.8E-06 50.2 8.0 38 142-183 158-195 (369)
361 KOG1051 Chaperone HSP104 and r 95.2 0.2 4.3E-06 53.1 11.6 105 124-230 568-687 (898)
362 cd03280 ABC_MutS2 MutS2 homolo 95.2 0.15 3.2E-06 44.7 9.3 22 141-162 28-49 (200)
363 PRK14723 flhF flagellar biosyn 95.2 0.18 3.9E-06 52.8 11.2 23 141-163 185-207 (767)
364 cd00227 CPT Chloramphenicol (C 95.2 0.015 3.3E-07 49.8 2.8 23 142-164 3-25 (175)
365 smart00534 MUTSac ATPase domai 95.2 0.12 2.7E-06 44.6 8.6 104 143-252 1-129 (185)
366 COG1222 RPT1 ATP-dependent 26S 95.2 0.38 8.3E-06 45.6 12.1 151 139-301 183-357 (406)
367 PRK05922 type III secretion sy 95.1 0.082 1.8E-06 51.8 8.1 23 142-164 158-180 (434)
368 PRK00409 recombination and DNA 95.1 0.13 2.9E-06 54.4 10.2 105 139-249 325-455 (782)
369 TIGR02788 VirB11 P-type DNA tr 95.1 0.087 1.9E-06 49.5 8.0 101 141-248 144-257 (308)
370 PF01583 APS_kinase: Adenylyls 95.1 0.02 4.4E-07 48.1 3.3 23 141-163 2-24 (156)
371 PRK13894 conjugal transfer ATP 95.1 0.062 1.3E-06 50.7 6.9 83 142-235 149-247 (319)
372 cd01130 VirB11-like_ATPase Typ 95.1 0.11 2.5E-06 44.9 8.1 35 126-163 13-47 (186)
373 PRK14974 cell division protein 95.1 0.19 4.2E-06 47.7 10.2 24 140-163 139-162 (336)
374 PRK15455 PrkA family serine pr 95.1 0.02 4.3E-07 57.6 3.7 40 124-163 82-125 (644)
375 CHL00059 atpA ATP synthase CF1 95.1 0.086 1.9E-06 52.2 8.0 66 142-213 142-243 (485)
376 KOG0744 AAA+-type ATPase [Post 95.1 0.056 1.2E-06 50.3 6.3 73 141-213 177-260 (423)
377 TIGR02314 ABC_MetN D-methionin 95.1 0.13 2.9E-06 49.0 9.3 22 142-163 32-53 (343)
378 TIGR02857 CydD thiol reductant 95.1 0.19 4E-06 50.9 10.8 23 141-163 348-370 (529)
379 COG0488 Uup ATPase components 95.1 0.23 5E-06 50.1 11.3 61 195-261 449-510 (530)
380 TIGR01313 therm_gnt_kin carboh 95.1 0.014 3E-07 49.2 2.2 21 144-164 1-21 (163)
381 PTZ00035 Rad51 protein; Provis 95.1 0.15 3.2E-06 48.6 9.4 52 139-190 116-171 (337)
382 TIGR03375 type_I_sec_LssB type 95.1 0.14 3E-06 53.7 10.1 22 142-163 492-513 (694)
383 PRK14530 adenylate kinase; Pro 95.0 0.016 3.5E-07 51.4 2.7 21 143-163 5-25 (215)
384 PRK13975 thymidylate kinase; P 95.0 0.018 4E-07 50.0 3.0 23 142-164 3-25 (196)
385 PRK12727 flagellar biosynthesi 95.0 0.15 3.2E-06 51.2 9.5 23 141-163 350-372 (559)
386 PRK13947 shikimate kinase; Pro 95.0 0.016 3.4E-07 49.2 2.5 21 143-163 3-23 (171)
387 cd00820 PEPCK_HprK Phosphoenol 95.0 0.022 4.7E-07 44.7 3.1 21 142-162 16-36 (107)
388 cd00464 SK Shikimate kinase (S 95.0 0.017 3.6E-07 48.0 2.6 20 144-163 2-21 (154)
389 PRK11174 cysteine/glutathione 95.0 0.16 3.4E-06 52.1 10.2 22 142-163 377-398 (588)
390 PRK13949 shikimate kinase; Pro 95.0 0.017 3.6E-07 49.4 2.6 22 143-164 3-24 (169)
391 COG0563 Adk Adenylate kinase a 95.0 0.017 3.6E-07 49.8 2.5 22 143-164 2-23 (178)
392 KOG2228 Origin recognition com 95.0 0.24 5.2E-06 46.5 10.2 147 124-276 30-219 (408)
393 TIGR00073 hypB hydrogenase acc 95.0 0.021 4.5E-07 50.4 3.2 26 138-163 19-44 (207)
394 cd03115 SRP The signal recogni 95.0 0.23 5E-06 42.2 9.6 21 143-163 2-22 (173)
395 TIGR00708 cobA cob(I)alamin ad 95.0 0.2 4.4E-06 42.8 9.0 53 191-244 84-140 (173)
396 PRK14737 gmk guanylate kinase; 95.0 0.024 5.2E-07 49.2 3.4 25 140-164 3-27 (186)
397 PF00005 ABC_tran: ABC transpo 94.9 0.022 4.9E-07 46.3 3.0 23 142-164 12-34 (137)
398 COG2274 SunT ABC-type bacterio 94.9 0.16 3.4E-06 53.1 9.9 22 142-163 500-521 (709)
399 TIGR00176 mobB molybdopterin-g 94.9 0.017 3.7E-07 48.6 2.3 21 143-163 1-21 (155)
400 PRK00771 signal recognition pa 94.9 0.33 7.2E-06 47.8 11.5 25 139-163 93-117 (437)
401 cd02027 APSK Adenosine 5'-phos 94.9 0.019 4E-07 48.0 2.5 21 143-163 1-21 (149)
402 COG1100 GTPase SAR1 and relate 94.9 0.021 4.5E-07 50.4 2.8 24 142-165 6-29 (219)
403 COG0467 RAD55 RecA-superfamily 94.8 0.027 5.8E-07 51.5 3.6 43 139-183 21-63 (260)
404 PRK07960 fliI flagellum-specif 94.8 0.093 2E-06 51.6 7.5 24 141-164 175-198 (455)
405 COG1428 Deoxynucleoside kinase 94.8 0.02 4.3E-07 50.2 2.5 24 141-164 4-27 (216)
406 TIGR03324 alt_F1F0_F1_al alter 94.8 0.11 2.3E-06 51.7 7.9 66 142-213 163-264 (497)
407 PRK11608 pspF phage shock prot 94.8 0.15 3.2E-06 48.4 8.7 98 143-244 31-151 (326)
408 TIGR01039 atpD ATP synthase, F 94.8 0.068 1.5E-06 52.6 6.5 71 142-213 144-247 (461)
409 TIGR01817 nifA Nif-specific re 94.8 0.48 1E-05 48.1 12.9 113 124-243 202-340 (534)
410 TIGR01041 ATP_syn_B_arch ATP s 94.8 0.079 1.7E-06 52.3 7.0 72 142-213 142-248 (458)
411 TIGR01040 V-ATPase_V1_B V-type 94.8 0.058 1.2E-06 53.0 5.9 72 142-213 142-257 (466)
412 COG4133 CcmA ABC-type transpor 94.8 0.3 6.5E-06 42.2 9.5 22 142-163 29-50 (209)
413 cd04139 RalA_RalB RalA/RalB su 94.8 0.027 5.9E-07 46.8 3.3 23 143-165 2-24 (164)
414 TIGR01069 mutS2 MutS2 family p 94.8 0.13 2.9E-06 54.3 9.0 105 139-249 320-450 (771)
415 cd01121 Sms Sms (bacterial rad 94.8 0.056 1.2E-06 52.1 5.8 39 141-181 82-120 (372)
416 PRK13657 cyclic beta-1,2-gluca 94.8 0.19 4.1E-06 51.6 10.0 22 142-163 362-383 (588)
417 PRK05917 DNA polymerase III su 94.7 1.2 2.5E-05 41.5 14.1 131 128-263 7-154 (290)
418 TIGR01026 fliI_yscN ATPase Fli 94.7 0.13 2.9E-06 50.7 8.3 23 142-164 164-186 (440)
419 cd03284 ABC_MutS1 MutS1 homolo 94.7 0.12 2.7E-06 45.9 7.5 21 142-162 31-51 (216)
420 TIGR00962 atpA proton transloc 94.7 0.09 2E-06 52.5 7.2 66 142-213 162-263 (501)
421 PF12775 AAA_7: P-loop contain 94.7 0.015 3.2E-07 53.7 1.6 84 127-215 22-112 (272)
422 COG2019 AdkA Archaeal adenylat 94.7 0.027 5.9E-07 47.4 3.0 23 141-163 4-26 (189)
423 PRK05057 aroK shikimate kinase 94.7 0.024 5.2E-07 48.5 2.8 23 142-164 5-27 (172)
424 PRK08472 fliI flagellum-specif 94.7 0.13 2.8E-06 50.5 8.1 24 141-164 157-180 (434)
425 COG1102 Cmk Cytidylate kinase 94.6 0.021 4.5E-07 47.9 2.1 23 143-165 2-24 (179)
426 PRK11650 ugpC glycerol-3-phosp 94.6 0.14 3E-06 49.2 8.1 22 142-163 31-52 (356)
427 COG1116 TauB ABC-type nitrate/ 94.6 0.027 5.9E-07 50.6 3.0 22 142-163 30-51 (248)
428 COG1419 FlhF Flagellar GTP-bin 94.6 0.038 8.3E-07 53.1 4.1 24 140-163 202-226 (407)
429 cd04121 Rab40 Rab40 subfamily. 94.6 0.07 1.5E-06 46.4 5.5 23 142-164 7-29 (189)
430 PLN02348 phosphoribulokinase 94.6 0.035 7.6E-07 53.4 3.9 26 138-163 46-71 (395)
431 PRK14527 adenylate kinase; Pro 94.6 0.026 5.7E-07 49.0 2.8 24 140-163 5-28 (191)
432 PRK11432 fbpC ferric transport 94.6 0.12 2.6E-06 49.5 7.6 22 142-163 33-54 (351)
433 PRK12339 2-phosphoglycerate ki 94.6 0.03 6.6E-07 49.0 3.2 24 141-164 3-26 (197)
434 TIGR01663 PNK-3'Pase polynucle 94.6 0.18 4E-06 50.7 9.0 64 138-213 366-429 (526)
435 PRK11176 lipid transporter ATP 94.6 0.17 3.8E-06 51.8 9.2 22 142-163 370-391 (582)
436 PRK09435 membrane ATPase/prote 94.6 0.059 1.3E-06 51.1 5.2 36 128-163 43-78 (332)
437 PRK09281 F0F1 ATP synthase sub 94.6 0.1 2.2E-06 52.2 7.1 66 142-213 163-264 (502)
438 PF00437 T2SE: Type II/IV secr 94.6 0.055 1.2E-06 49.7 5.0 104 128-248 114-236 (270)
439 cd04155 Arl3 Arl3 subfamily. 94.5 0.033 7.1E-07 47.0 3.3 25 140-164 13-37 (173)
440 PRK14493 putative bifunctional 94.5 0.028 6.1E-07 51.9 3.0 22 142-163 2-23 (274)
441 PF03308 ArgK: ArgK protein; 94.5 0.057 1.2E-06 48.9 4.8 38 126-163 14-51 (266)
442 TIGR02768 TraA_Ti Ti-type conj 94.5 0.13 2.8E-06 54.3 8.3 94 142-241 369-474 (744)
443 cd01672 TMPK Thymidine monopho 94.5 0.028 6E-07 48.6 2.8 21 143-163 2-22 (200)
444 PRK15429 formate hydrogenlyase 94.5 0.17 3.7E-06 53.0 9.0 99 142-244 400-521 (686)
445 COG1763 MobB Molybdopterin-gua 94.5 0.027 5.9E-07 47.6 2.5 23 141-163 2-24 (161)
446 PRK07196 fliI flagellum-specif 94.5 0.14 3.1E-06 50.1 7.9 24 141-164 155-178 (434)
447 TIGR02524 dot_icm_DotB Dot/Icm 94.5 0.085 1.8E-06 50.6 6.2 31 130-163 126-156 (358)
448 TIGR02782 TrbB_P P-type conjug 94.5 0.092 2E-06 49.2 6.3 76 142-223 133-222 (299)
449 PRK09825 idnK D-gluconate kina 94.5 0.029 6.3E-07 48.2 2.8 23 142-164 4-26 (176)
450 PRK13343 F0F1 ATP synthase sub 94.5 0.11 2.3E-06 51.9 7.0 66 142-213 163-264 (502)
451 COG1936 Predicted nucleotide k 94.5 0.028 6.1E-07 47.7 2.5 20 143-162 2-21 (180)
452 PRK04182 cytidylate kinase; Pr 94.5 0.03 6.4E-07 47.7 2.8 22 143-164 2-23 (180)
453 PLN02200 adenylate kinase fami 94.5 0.032 7E-07 50.3 3.1 24 140-163 42-65 (234)
454 PLN02840 tRNA dimethylallyltra 94.4 0.081 1.7E-06 51.6 6.0 26 139-164 19-44 (421)
455 cd03116 MobB Molybdenum is an 94.4 0.036 7.8E-07 46.8 3.2 22 142-163 2-23 (159)
456 COG3640 CooC CO dehydrogenase 94.4 0.047 1E-06 48.6 3.9 47 143-190 2-48 (255)
457 PRK08356 hypothetical protein; 94.4 0.041 8.8E-07 48.0 3.5 21 142-162 6-26 (195)
458 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.4 0.033 7.2E-07 49.3 3.0 22 142-163 31-52 (218)
459 TIGR02546 III_secr_ATP type II 94.4 0.21 4.6E-06 49.0 8.8 24 141-164 145-168 (422)
460 PLN02796 D-glycerate 3-kinase 94.4 0.036 7.7E-07 52.6 3.3 24 140-163 99-122 (347)
461 cd03225 ABC_cobalt_CbiO_domain 94.4 0.034 7.3E-07 49.0 3.0 22 142-163 28-49 (211)
462 COG1127 Ttg2A ABC-type transpo 94.3 0.39 8.4E-06 43.1 9.5 53 195-249 155-211 (263)
463 TIGR01166 cbiO cobalt transpor 94.3 0.036 7.9E-07 48.0 3.1 22 142-163 19-40 (190)
464 PRK06761 hypothetical protein; 94.3 0.066 1.4E-06 49.5 4.9 23 142-164 4-26 (282)
465 PF13521 AAA_28: AAA domain; P 94.3 0.03 6.5E-07 47.2 2.5 20 144-163 2-21 (163)
466 COG4608 AppF ABC-type oligopep 94.3 0.051 1.1E-06 49.5 4.0 108 141-254 39-179 (268)
467 TIGR01192 chvA glucan exporter 94.3 0.3 6.5E-06 50.2 10.2 23 141-163 361-383 (585)
468 TIGR00750 lao LAO/AO transport 94.3 0.055 1.2E-06 50.7 4.4 36 128-163 21-56 (300)
469 COG1703 ArgK Putative periplas 94.3 0.057 1.2E-06 49.8 4.3 64 127-190 37-100 (323)
470 PRK12726 flagellar biosynthesi 94.3 0.48 1E-05 45.7 10.7 24 140-163 205-228 (407)
471 KOG0733 Nuclear AAA ATPase (VC 94.3 0.1 2.2E-06 52.5 6.3 67 140-213 222-292 (802)
472 TIGR00960 3a0501s02 Type II (G 94.3 0.036 7.7E-07 49.1 3.0 22 142-163 30-51 (216)
473 PRK06793 fliI flagellum-specif 94.3 0.45 9.7E-06 46.7 10.8 23 142-164 157-179 (432)
474 KOG0743 AAA+-type ATPase [Post 94.3 3.9 8.5E-05 40.0 16.9 119 142-276 236-383 (457)
475 PRK05986 cob(I)alamin adenolsy 94.3 0.35 7.5E-06 42.0 8.9 104 140-244 21-158 (191)
476 cd03297 ABC_ModC_molybdenum_tr 94.3 0.04 8.7E-07 48.7 3.3 24 139-163 22-45 (214)
477 TIGR01448 recD_rel helicase, p 94.3 0.18 3.9E-06 53.0 8.6 93 142-239 339-448 (720)
478 PF03266 NTPase_1: NTPase; In 94.3 0.032 7E-07 47.6 2.5 21 144-164 2-22 (168)
479 TIGR01846 type_I_sec_HlyB type 94.2 0.31 6.6E-06 51.2 10.3 22 142-163 484-505 (694)
480 TIGR00231 small_GTP small GTP- 94.2 0.04 8.7E-07 44.8 3.1 23 143-165 3-25 (161)
481 smart00173 RAS Ras subfamily o 94.2 0.037 8.1E-07 46.2 2.9 22 143-164 2-23 (164)
482 PRK13946 shikimate kinase; Pro 94.2 0.032 7E-07 48.2 2.6 22 142-163 11-32 (184)
483 PF07726 AAA_3: ATPase family 94.2 0.034 7.4E-07 45.0 2.5 27 144-172 2-28 (131)
484 PRK13948 shikimate kinase; Pro 94.2 0.037 8E-07 47.9 2.9 24 140-163 9-32 (182)
485 cd01862 Rab7 Rab7 subfamily. 94.2 0.039 8.4E-07 46.4 3.0 21 144-164 3-23 (172)
486 PF12780 AAA_8: P-loop contain 94.2 0.3 6.5E-06 44.9 9.0 125 142-277 32-159 (268)
487 PF12061 DUF3542: Protein of u 94.2 0.12 2.6E-06 47.8 6.2 95 7-101 296-401 (402)
488 TIGR00064 ftsY signal recognit 94.2 0.044 9.6E-07 50.6 3.5 25 139-163 70-94 (272)
489 cd04163 Era Era subfamily. Er 94.2 0.05 1.1E-06 44.9 3.6 24 141-164 3-26 (168)
490 PF10443 RNA12: RNA12 protein; 94.2 0.21 4.7E-06 48.5 8.2 38 125-164 3-41 (431)
491 TIGR02173 cyt_kin_arch cytidyl 94.2 0.039 8.5E-07 46.6 3.0 21 143-163 2-22 (171)
492 PF03193 DUF258: Protein of un 94.2 0.072 1.6E-06 45.0 4.5 37 124-165 23-59 (161)
493 TIGR03574 selen_PSTK L-seryl-t 94.2 0.029 6.3E-07 50.9 2.3 21 143-163 1-21 (249)
494 cd04159 Arl10_like Arl10-like 94.2 0.05 1.1E-06 44.6 3.5 22 144-165 2-23 (159)
495 PRK10416 signal recognition pa 94.2 0.045 9.7E-07 51.7 3.5 24 140-163 113-136 (318)
496 cd04119 RJL RJL (RabJ-Like) su 94.2 0.041 8.8E-07 45.9 3.0 22 144-165 3-24 (168)
497 PF01926 MMR_HSR1: 50S ribosom 94.2 0.042 9.1E-07 43.3 2.9 21 144-164 2-22 (116)
498 TIGR01287 nifH nitrogenase iro 94.2 0.033 7.2E-07 51.3 2.6 22 142-163 1-22 (275)
499 KOG2170 ATPase of the AAA+ sup 94.1 0.16 3.4E-06 47.0 6.8 90 138-228 107-203 (344)
500 cd01428 ADK Adenylate kinase ( 94.1 0.035 7.6E-07 48.0 2.6 20 144-163 2-21 (194)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-52 Score=434.78 Aligned_cols=337 Identities=18% Similarity=0.223 Sum_probs=266.7
Q ss_pred HHHHHHHHhH-HHHhhc--h--hhHHHHHHHHHHHHHHHHHHHhcccCChH----HHHHHHHHhhhHhHHHHH-HHHHHh
Q 036086 10 DLVCGRLDSQ-AGAFWN--N--GEMKRLRLNLRDLHNLLRKAKQDAILNPL----LTDLNDLASDVDGLIDAR-MEVSKY 79 (355)
Q Consensus 10 ~~l~~kl~s~-~~e~~~--g--~~~~~L~~~L~~i~~~l~~a~~~~~~~~~----l~~lr~~ayd~eD~lD~~-~~~~~~ 79 (355)
+..++|+.++ .+++.. | +.+..|+++|..++.+++|++.++..... ...+++++|++||.++.| .+....
T Consensus 6 s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~ 85 (889)
T KOG4658|consen 6 SFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIER 85 (889)
T ss_pred EEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666 555444 4 68999999999999999999998876655 888899999999999999 766543
Q ss_pred hhhh---------------HHhHHHHHhHHHHHHHHHHHHhcccc---------CCC--CCCCCCCCC--------cchh
Q 036086 80 KFEK---------------KVMKIHQGRLVPLLNSLQKIVAGHDV---------EGG--ALSQRSGET--------GLES 125 (355)
Q Consensus 80 ~~~~---------------~~r~~i~~~i~~l~~~l~~i~~~~~~---------~~~--~~~~~~~~~--------~~~~ 125 (355)
+... .++++.+..+..+.+++..+.+.... .+. .+....++. ..+.
T Consensus 86 ~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~ 165 (889)
T KOG4658|consen 86 KANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLET 165 (889)
T ss_pred HHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHH
Confidence 2211 14455555555555555544444333 111 111111111 1278
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcc-ccCCCCceEEEEeCCCCCHHHHHH--------------
Q 036086 126 SVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDD-VKSRLPFKVWYSVGKNLDFSTAVQ-------------- 190 (355)
Q Consensus 126 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~i~~-------------- 190 (355)
.++++++.|.+++ ..+++|+||||+||||||++++|+.. ++++|+..+||+||+.|+...+++
T Consensus 166 ~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~ 243 (889)
T KOG4658|consen 166 MLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWE 243 (889)
T ss_pred HHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccc
Confidence 8999999999653 39999999999999999999999998 999999999999999999999887
Q ss_pred -----HHHHHHhhcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhcccCCcccccCCCCCh
Q 036086 191 -----EIRNRRNEIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQTVPEAEHLIYFSE 265 (355)
Q Consensus 191 -----~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~l~~L~~ 265 (355)
.++..+.+.|++||||||||||| +..+|+.+..++|... +||||++|||++.||...|+.. ..+++.+|++
T Consensus 244 ~~~~~~~~~~i~~~L~~krfllvLDDIW--~~~dw~~I~~~~p~~~-~g~KvvlTTRs~~V~~~~m~~~-~~~~v~~L~~ 319 (889)
T KOG4658|consen 244 DKEEDELASKLLNLLEGKRFLLVLDDIW--EEVDWDKIGVPFPSRE-NGSKVVLTTRSEEVCGRAMGVD-YPIEVECLTP 319 (889)
T ss_pred hhhHHHHHHHHHHHhccCceEEEEeccc--ccccHHhcCCCCCCcc-CCeEEEEEeccHhhhhccccCC-ccccccccCc
Confidence 56777889999999999999999 7888999999999998 8999999999999998856665 8999999999
Q ss_pred hhHHHHhhhhCCCCC-CCcchHHHHHHHHHHhcCCCchHHHHHHh----------hccccc-----------CCCcCccc
Q 036086 266 SNSWSNLNCELPPSS-QEAHRVEDLETGSAMDEEGVTSLTQFLLD----------IDPVAT-----------GESLETVP 323 (355)
Q Consensus 266 ~~s~~Lf~~~af~~~-~~~~~~~~~~~~i~~~c~GlPla~~~~~~----------~~~~~~-----------~~~~~~~~ 323 (355)
++||.||++.||... ...+.++.+|++|+++|+|||||+++++. |..... +.+..+++
T Consensus 320 ~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~ 399 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILP 399 (889)
T ss_pred cccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHH
Confidence 999999999999874 45566999999999999999999988773 332211 11335678
Q ss_pred hHHhhhcCCCccccccccc--cccCcccchh
Q 036086 324 TSDRTERRLPIHDIDCEAG--PFQNKDKVRR 352 (355)
Q Consensus 324 ~l~~sY~~Lp~~lk~CF~~--~~~~~~~~~~ 352 (355)
+|++||++||+|+|.||+| .||.++.|.+
T Consensus 400 iLklSyd~L~~~lK~CFLycalFPED~~I~~ 430 (889)
T KOG4658|consen 400 ILKLSYDNLPEELKSCFLYCALFPEDYEIKK 430 (889)
T ss_pred hhhccHhhhhHHHHHHHHhhccCCcccccch
Confidence 9999999999999999999 5599988753
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.5e-39 Score=302.26 Aligned_cols=224 Identities=23% Similarity=0.314 Sum_probs=174.3
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-------------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ------------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~------------- 190 (355)
+.++++|.++|....++.++|+|+||||+||||||..+|++..++++|+.++|+.++...+...++.
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 81 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI 81 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 5688999999997668899999999999999999999999777999999999999999888777666
Q ss_pred -------HHHHHHhhcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhcccCCcccccCCCC
Q 036086 191 -------EIRNRRNEIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQTVPEAEHLIYF 263 (355)
Q Consensus 191 -------~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~l~~L 263 (355)
.+...+.+.|.+++||||||||| +...|+.+...++... .||+||||||+..++.. ++.....|++++|
T Consensus 82 ~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~-~~~kilvTTR~~~v~~~-~~~~~~~~~l~~L 157 (287)
T PF00931_consen 82 SDPKDIEELQDQLRELLKDKRCLLVLDDVW--DEEDLEELREPLPSFS-SGSKILVTTRDRSVAGS-LGGTDKVIELEPL 157 (287)
T ss_dssp SCCSSHHHHHHHHHHHHCCTSEEEEEEEE---SHHHH-------HCHH-SS-EEEEEESCGGGGTT-HHSCEEEEECSS-
T ss_pred ccccccccccccchhhhccccceeeeeeec--cccccccccccccccc-ccccccccccccccccc-ccccccccccccc
Confidence 45677888889999999999999 8889999988888777 79999999999999987 6642278999999
Q ss_pred ChhhHHHHhhhhCCCCC-CCcchHHHHHHHHHHhcCCCchHHHHHHhhccccc-CCC-------------------cCcc
Q 036086 264 SESNSWSNLNCELPPSS-QEAHRVEDLETGSAMDEEGVTSLTQFLLDIDPVAT-GES-------------------LETV 322 (355)
Q Consensus 264 ~~~~s~~Lf~~~af~~~-~~~~~~~~~~~~i~~~c~GlPla~~~~~~~~~~~~-~~~-------------------~~~~ 322 (355)
++++|++||++.++... ..++.++..+++|+++|+|+|+|++.++..++.+. ..+ ..+.
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF 237 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999998665 34556678899999999999999988876553221 111 1234
Q ss_pred chHHhhhcCCCccccccccc--cccCcccch
Q 036086 323 PTSDRTERRLPIHDIDCEAG--PFQNKDKVR 351 (355)
Q Consensus 323 ~~l~~sY~~Lp~~lk~CF~~--~~~~~~~~~ 351 (355)
..+..||+.||+++|.||+| +||...++.
T Consensus 238 ~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~ 268 (287)
T PF00931_consen 238 SALELSYDSLPDELRRCFLYLSIFPEGVPIP 268 (287)
T ss_dssp HHHHHHHHSSHTCCHHHHHHGGGSGTTS-EE
T ss_pred ccceechhcCCccHHHHHhhCcCCCCCceEC
Confidence 56788999999999999987 788877654
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-32 Score=297.70 Aligned_cols=219 Identities=16% Similarity=0.123 Sum_probs=176.6
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEe---CCC-----------CCHH-HH
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSV---GKN-----------LDFS-TA 188 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~~~-~i 188 (355)
+...+++..+|.-+.+++++|+||||||+||||||+.+|+ ++..+|+..+|+.. +.. ++.. .+
T Consensus 190 ~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l 267 (1153)
T PLN03210 190 EDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHL 267 (1153)
T ss_pred HHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHH
Confidence 7888888888865567799999999999999999999999 78889998888742 111 1111 11
Q ss_pred HH----H----------HHHHHhhcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhcccCC
Q 036086 189 VQ----E----------IRNRRNEIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQTV 254 (355)
Q Consensus 189 ~~----~----------l~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~~ 254 (355)
.+ . ....+++.++++|+|||||||| +...|+.+........ +||+||||||+..++.. ++..
T Consensus 268 ~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~--~~~~l~~L~~~~~~~~-~GsrIIiTTrd~~vl~~-~~~~ 343 (1153)
T PLN03210 268 QRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLD--DQDVLDALAGQTQWFG-SGSRIIVITKDKHFLRA-HGID 343 (1153)
T ss_pred HHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCC--CHHHHHHHHhhCccCC-CCcEEEEEeCcHHHHHh-cCCC
Confidence 11 1 1145677889999999999999 8889999887666556 89999999999999988 7777
Q ss_pred cccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHHHHHHhhcccccCCCc-------------Cc
Q 036086 255 PEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLTQFLLDIDPVATGESL-------------ET 321 (355)
Q Consensus 255 ~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~~~~~~~~~~~~~~~~-------------~~ 321 (355)
++|++..|++++||+||+.+||+...++..+.+++++|+++|+|+|||+++++..+......+| .+
T Consensus 344 -~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I 422 (1153)
T PLN03210 344 -HIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKI 422 (1153)
T ss_pred -eEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHH
Confidence 8999999999999999999999876666779999999999999999999999877665443322 35
Q ss_pred cchHHhhhcCCCcc-ccccccc--cccCccc
Q 036086 322 VPTSDRTERRLPIH-DIDCEAG--PFQNKDK 349 (355)
Q Consensus 322 ~~~l~~sY~~Lp~~-lk~CF~~--~~~~~~~ 349 (355)
..+|.+||++||++ .|.||++ ||++..+
T Consensus 423 ~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~ 453 (1153)
T PLN03210 423 EKTLRVSYDGLNNKKDKAIFRHIACLFNGEK 453 (1153)
T ss_pred HHHHHHhhhccCccchhhhhheehhhcCCCC
Confidence 67899999999875 8999997 6765533
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.10 E-value=6.8e-09 Score=95.45 Aligned_cols=180 Identities=16% Similarity=0.199 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH------------
Q 036086 124 ESSVDSVKNALLRD-GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ------------ 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~------------ 190 (355)
....+++.+.+... .....++.|+|++|+|||||++.+++..... .+ ..+|+. ....+..+++.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~ 101 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLV-NTRVDAEDLLRMVAADFGLETEG 101 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeee-CCCCCHHHHHHHHHHHcCCCCCC
Confidence 34445555555432 3345678999999999999999999854321 11 122332 22344444443
Q ss_pred --------HHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccC--CCCCcEEEEecCChhHhhhcccC------
Q 036086 191 --------EIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDM--RLVGFYVLVTTHSTSVATMMMQT------ 253 (355)
Q Consensus 191 --------~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~--~~~gs~IlvTTR~~~va~~~~~~------ 253 (355)
.+...+.. ...++++++|+||+|.-....++.+....... ......|++|.... .... +..
T Consensus 102 ~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~-l~~~~~~~l 179 (269)
T TIGR03015 102 RDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRET-LQSPQLQQL 179 (269)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHH-HcCchhHHH
Confidence 12222222 23678899999999976666777765322211 10223455555432 2211 111
Q ss_pred ---CcccccCCCCChhhHHHHhhhhCCCCC--CCcchHHHHHHHHHHhcCCCchHHHHHH
Q 036086 254 ---VPEAEHLIYFSESNSWSNLNCELPPSS--QEAHRVEDLETGSAMDEEGVTSLTQFLL 308 (355)
Q Consensus 254 ---~~~~~~l~~L~~~~s~~Lf~~~af~~~--~~~~~~~~~~~~i~~~c~GlPla~~~~~ 308 (355)
....+++.+|+.++...++....-... ....-..+....|...|+|.|..++.+.
T Consensus 180 ~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~ 239 (269)
T TIGR03015 180 RQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILC 239 (269)
T ss_pred HhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHH
Confidence 014578999999999998876642221 1122335788889999999998886665
No 5
>PF05729 NACHT: NACHT domain
Probab=98.98 E-value=3.4e-09 Score=89.60 Aligned_cols=131 Identities=19% Similarity=0.341 Sum_probs=82.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCC----CCceEEEEeCCCCC------HHHHHH--------HHHHHHhh-cCCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSR----LPFKVWYSVGKNLD------FSTAVQ--------EIRNRRNE-IPSS 202 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~------~~~i~~--------~l~~~l~~-~l~~ 202 (355)
+++.|.|.+|+||||+++.++.+-.-... +...+|.+.+...+ +.+.+. .....+.. ..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 47899999999999999998874322222 44566776654322 222222 11111111 1256
Q ss_pred CcEEEEEeCCCCCCh--h-----hHHHHH-Hhhcc-CCCCCcEEEEecCChhH---hhhcccCCcccccCCCCChhhHHH
Q 036086 203 KRLLFALDDVSHLND--D-----NLANLR-LLVSD-MRLVGFYVLVTTHSTSV---ATMMMQTVPEAEHLIYFSESNSWS 270 (355)
Q Consensus 203 kr~LlVlDdvw~~~~--~-----~~~~l~-~~l~~-~~~~gs~IlvTTR~~~v---a~~~~~~~~~~~~l~~L~~~~s~~ 270 (355)
+++++|+|++.+... . .+..+. ..++. .. ++.+++||||.... ... .... ..+.+.+|++++..+
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~liit~r~~~~~~~~~~-~~~~-~~~~l~~~~~~~~~~ 157 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALP-PGVKLIITSRPRAFPDLRRR-LKQA-QILELEPFSEEDIKQ 157 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccC-CCCeEEEEEcCChHHHHHHh-cCCC-cEEEECCCCHHHHHH
Confidence 899999999874322 1 233333 23333 24 68899999998766 333 4444 679999999999999
Q ss_pred Hhhhh
Q 036086 271 NLNCE 275 (355)
Q Consensus 271 Lf~~~ 275 (355)
++.+.
T Consensus 158 ~~~~~ 162 (166)
T PF05729_consen 158 YLRKY 162 (166)
T ss_pred HHHHH
Confidence 98765
No 6
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=1.9e-08 Score=107.88 Aligned_cols=204 Identities=9% Similarity=0.053 Sum_probs=121.5
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHHHH-----------
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-DFSTAVQEI----------- 192 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~l----------- 192 (355)
-.+.+|.+.|.. ....+++.|.|++|.||||++.+.... ++..+|+++.... +...+...+
T Consensus 17 ~~R~rl~~~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~ 89 (903)
T PRK04841 17 VVRERLLAKLSG-ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGH 89 (903)
T ss_pred CcchHHHHHHhc-ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcc
Confidence 456778777764 446789999999999999999997752 3368899997443 443333311
Q ss_pred -------------------HHHHhhcC-C-CCcEEEEEeCCCCCChhhHHHHH-HhhccCCCCCcEEEEecCChhHhhh-
Q 036086 193 -------------------RNRRNEIP-S-SKRLLFALDDVSHLNDDNLANLR-LLVSDMRLVGFYVLVTTHSTSVATM- 249 (355)
Q Consensus 193 -------------------~~~l~~~l-~-~kr~LlVlDdvw~~~~~~~~~l~-~~l~~~~~~gs~IlvTTR~~~va~~- 249 (355)
...+-..+ . +.+++|||||+...+......+. ..++... .+.++|||||...-...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~-~~~~lv~~sR~~~~~~~~ 168 (903)
T PRK04841 90 CSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQP-ENLTLVVLSRNLPPLGIA 168 (903)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCC-CCeEEEEEeCCCCCCchH
Confidence 11111112 2 67899999999754433333333 3333333 56678899997421100
Q ss_pred cccCCcccccCC----CCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHHHHHHhhcccccCC------C-
Q 036086 250 MMQTVPEAEHLI----YFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLTQFLLDIDPVATGE------S- 318 (355)
Q Consensus 250 ~~~~~~~~~~l~----~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~~~~~~~~~~~~~~------~- 318 (355)
-.........+. +|+.+|+.++|....... - .......+...|+|.|++++.+........+. .
T Consensus 169 ~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~ 243 (903)
T PRK04841 169 NLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-I----EAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRL 243 (903)
T ss_pred hHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-C----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhh
Confidence 011111344555 999999999997653221 1 12445678899999999998776443222210 0
Q ss_pred -----cCccchHH-hhhcCCCcccccccc
Q 036086 319 -----LETVPTSD-RTERRLPIHDIDCEA 341 (355)
Q Consensus 319 -----~~~~~~l~-~sY~~Lp~~lk~CF~ 341 (355)
..+...+. .-+..||+..+..+.
T Consensus 244 ~~~~~~~~~~~l~~~v~~~l~~~~~~~l~ 272 (903)
T PRK04841 244 AGINASHLSDYLVEEVLDNVDLETRHFLL 272 (903)
T ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHH
Confidence 01111122 247889998877664
No 7
>PRK06893 DNA replication initiation factor; Validated
Probab=98.94 E-value=3.5e-09 Score=95.29 Aligned_cols=149 Identities=11% Similarity=0.048 Sum_probs=91.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-hhh
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLN-DDN 219 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~-~~~ 219 (355)
.+.+-++|+.|+|||+|++.+.+. .........|++++.... .. ..+.+.+. +.-+|+|||+|... ...
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~~---~~----~~~~~~~~-~~dlLilDDi~~~~~~~~ 108 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQY---FS----PAVLENLE-QQDLVCLDDLQAVIGNEE 108 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhhh---hh----HHHHhhcc-cCCEEEEeChhhhcCChH
Confidence 356889999999999999999984 322233446776642111 00 11112222 33589999999532 345
Q ss_pred HHH-HHHhhccCCCCCcEEEEe-cCC---------hhHhhhcccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHH
Q 036086 220 LAN-LRLLVSDMRLVGFYVLVT-THS---------TSVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVED 288 (355)
Q Consensus 220 ~~~-l~~~l~~~~~~gs~IlvT-TR~---------~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~ 288 (355)
|+. +...+......|+.+|++ +.. +.++.. ++.. ..++++++++++.++++++.++...- .-.++
T Consensus 109 ~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sR-l~~g-~~~~l~~pd~e~~~~iL~~~a~~~~l--~l~~~ 184 (229)
T PRK06893 109 WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASR-LTWG-EIYQLNDLTDEQKIIVLQRNAYQRGI--ELSDE 184 (229)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHH-HhcC-CeeeCCCCCHHHHHHHHHHHHHHcCC--CCCHH
Confidence 653 334343321145566554 443 356665 5555 78999999999999999988864321 12245
Q ss_pred HHHHHHHhcCCCchH
Q 036086 289 LETGSAMDEEGVTSL 303 (355)
Q Consensus 289 ~~~~i~~~c~GlPla 303 (355)
+..-|++.+.|-.-+
T Consensus 185 v~~~L~~~~~~d~r~ 199 (229)
T PRK06893 185 VANFLLKRLDRDMHT 199 (229)
T ss_pred HHHHHHHhccCCHHH
Confidence 666777888766533
No 8
>PF13173 AAA_14: AAA domain
Probab=98.89 E-value=6.6e-09 Score=84.79 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=80.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhhH
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLNDDNL 220 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~ 220 (355)
-+++.|.|+.|+|||||+++++.+.. .....++++............++.+.+.+....+..+|+||++. ....|
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq--~~~~~ 76 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQ--YLPDW 76 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhh--hhccH
Confidence 36889999999999999999887432 23455677655443322111113344444444578889999998 66678
Q ss_pred HHHHHhhccCCCCCcEEEEecCChhHhhh-----cccCCcccccCCCCChhhH
Q 036086 221 ANLRLLVSDMRLVGFYVLVTTHSTSVATM-----MMQTVPEAEHLIYFSESNS 268 (355)
Q Consensus 221 ~~l~~~l~~~~~~gs~IlvTTR~~~va~~-----~~~~~~~~~~l~~L~~~~s 268 (355)
......+-+.. +..+|++|+.+...... ..|.. ..++|.||+-.|.
T Consensus 77 ~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 77 EDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFREF 127 (128)
T ss_pred HHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHHh
Confidence 87777776655 56789999987665422 01222 5688999987663
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.81 E-value=7.2e-08 Score=93.71 Aligned_cols=182 Identities=16% Similarity=0.175 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----------
Q 036086 124 ESSVDSVKNALLRD--GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ----------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~----------- 190 (355)
+++.++|...|... +.....+.|+|++|+|||++++.++++..-....-..+++......+...++.
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~ 115 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPP 115 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCC
Confidence 78888888887443 33445578999999999999999998432222112234454444334333333
Q ss_pred --------HHHHHHhhcCC--CCcEEEEEeCCCCCC----hhhHHHHHHhhccCCCCCcE--EEEecCChhHhhhcccC-
Q 036086 191 --------EIRNRRNEIPS--SKRLLFALDDVSHLN----DDNLANLRLLVSDMRLVGFY--VLVTTHSTSVATMMMQT- 253 (355)
Q Consensus 191 --------~l~~~l~~~l~--~kr~LlVlDdvw~~~----~~~~~~l~~~l~~~~~~gs~--IlvTTR~~~va~~~~~~- 253 (355)
++...+.+.+. ++..+||||+++.-. .+.+..+...+.. . .+++ +|.++....+... ...
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~-~~~~v~vI~i~~~~~~~~~-l~~~ 192 (394)
T PRK00411 116 PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-Y-PGARIGVIGISSDLTFLYI-LDPR 192 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-c-CCCeEEEEEEECCcchhhh-cCHH
Confidence 12223333332 456899999998421 2233333333222 2 2333 5666555443322 111
Q ss_pred -----CcccccCCCCChhhHHHHhhhhC---CCCCC-CcchHHHHHHHHHHhcCCCchHHHHHH
Q 036086 254 -----VPEAEHLIYFSESNSWSNLNCEL---PPSSQ-EAHRVEDLETGSAMDEEGVTSLTQFLL 308 (355)
Q Consensus 254 -----~~~~~~l~~L~~~~s~~Lf~~~a---f~~~~-~~~~~~~~~~~i~~~c~GlPla~~~~~ 308 (355)
....+.+.+++.++..+++..++ |.... .+..++.+++......|.++.|++.+.
T Consensus 193 ~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 193 VKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred HHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 01467899999999999988764 32222 233445555544444677888877664
No 10
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.76 E-value=1.3e-07 Score=92.50 Aligned_cols=161 Identities=15% Similarity=0.162 Sum_probs=95.0
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhc-CCCCcEEEE
Q 036086 130 VKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEI-PSSKRLLFA 208 (355)
Q Consensus 130 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~-l~~kr~LlV 208 (355)
+.+++. .+....+.++|++|+||||||+.+.+. .... |+.++....-..-++.+.+..... ..+++.+|+
T Consensus 27 L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~ 97 (413)
T PRK13342 27 LRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLREVIEEARQRRSAGRRTILF 97 (413)
T ss_pred HHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHHHHHHHHHhhhcCCceEEE
Confidence 444444 344556788999999999999999873 2222 333333222222222222222222 246789999
Q ss_pred EeCCCCCChhhHHHHHHhhccCCCCCcEEEE--ecCChh--HhhhcccCCcccccCCCCChhhHHHHhhhhCCCCCCCc-
Q 036086 209 LDDVSHLNDDNLANLRLLVSDMRLVGFYVLV--TTHSTS--VATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQEA- 283 (355)
Q Consensus 209 lDdvw~~~~~~~~~l~~~l~~~~~~gs~Ilv--TTR~~~--va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~- 283 (355)
+|+++..+....+.+...+. .|+.+++ ||.+.. +... +.+....+.+.+|+.++.+.++.+.+-......
T Consensus 98 IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~a-L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i 172 (413)
T PRK13342 98 IDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPA-LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLV 172 (413)
T ss_pred EechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHH-HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCC
Confidence 99999766666676666554 3444444 454432 2122 112226789999999999999987542211111
Q ss_pred chHHHHHHHHHHhcCCCchHH
Q 036086 284 HRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 284 ~~~~~~~~~i~~~c~GlPla~ 304 (355)
.-.++....++..|+|-|..+
T Consensus 173 ~i~~~al~~l~~~s~Gd~R~a 193 (413)
T PRK13342 173 ELDDEALDALARLANGDARRA 193 (413)
T ss_pred CCCHHHHHHHHHhCCCCHHHH
Confidence 222455667888899988443
No 11
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.75 E-value=1.3e-07 Score=89.14 Aligned_cols=125 Identities=16% Similarity=0.192 Sum_probs=83.9
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH-hhcCCCCcEEEEEeCCCCCC
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRR-NEIPSSKRLLFALDDVSHLN 216 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l-~~~l~~kr~LlVlDdvw~~~ 216 (355)
.+.+.-.-.||++|+||||||+.+.. ....+| ..+|-..+-.+-++.+.+.- +....|+|.+|.+|.|..-+
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn 117 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN 117 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC
Confidence 45667777999999999999999987 444444 44444333332222222222 33445899999999999777
Q ss_pred hhhHHHHHHhhccCCCCCcEEEE--ecCChhHh--hhcccCCcccccCCCCChhhHHHHhhh
Q 036086 217 DDNLANLRLLVSDMRLVGFYVLV--TTHSTSVA--TMMMQTVPEAEHLIYFSESNSWSNLNC 274 (355)
Q Consensus 217 ~~~~~~l~~~l~~~~~~gs~Ilv--TTR~~~va--~~~~~~~~~~~~l~~L~~~~s~~Lf~~ 274 (355)
..+-+.+.+. -. +|.-|+| ||-++... ..+.+.. .++.+++|+.++-..++.+
T Consensus 118 K~QQD~lLp~---vE-~G~iilIGATTENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 118 KAQQDALLPH---VE-NGTIILIGATTENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred hhhhhhhhhh---hc-CCeEEEEeccCCCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHH
Confidence 7776666444 44 6777777 77766421 1102233 7999999999999999988
No 12
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.74 E-value=2.7e-08 Score=88.77 Aligned_cols=173 Identities=15% Similarity=0.141 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH---HH------------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFS---TA------------ 188 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---~i------------ 188 (355)
+.+.++|.+++.. +....+.|+|+.|+|||+|++.+.+.. ++.-...+|+......... .+
T Consensus 5 ~~el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (234)
T PF01637_consen 5 EKELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNESSLRSFIEETSLADELSE 80 (234)
T ss_dssp HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHH
T ss_pred HHHHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHH
Confidence 4566777776663 345678899999999999999998733 2111123333332222211 11
Q ss_pred -------------------------HHHHHHHHhhcCCCCcEEEEEeCCCCCC------hhhHHHHHHhhcc---CCCCC
Q 036086 189 -------------------------VQEIRNRRNEIPSSKRLLFALDDVSHLN------DDNLANLRLLVSD---MRLVG 234 (355)
Q Consensus 189 -------------------------~~~l~~~l~~~l~~kr~LlVlDdvw~~~------~~~~~~l~~~l~~---~~~~g 234 (355)
+..+...+.+ .+++.+||+||+..-. ......+...+.. .. +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~ 157 (234)
T PF01637_consen 81 ALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ-NV 157 (234)
T ss_dssp HHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T-TE
T ss_pred HHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC-Cc
Confidence 0011222221 2345999999986322 2223334443433 33 33
Q ss_pred cEEEEecCChhHhhhc-------ccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHHHH
Q 036086 235 FYVLVTTHSTSVATMM-------MQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLTQF 306 (355)
Q Consensus 235 s~IlvTTR~~~va~~~-------~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~~~ 306 (355)
+ +|+++.+..+.... .+.. ..+.+++|+.+++++++....-...+- +.-.....+|...+||.|..+..
T Consensus 158 ~-~v~~~S~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 S-IVITGSSDSLMEEFLDDKSPLFGRF-SHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp E-EEEEESSHHHHHHTT-TTSTTTT----EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred e-EEEECCchHHHHHhhcccCcccccc-ceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 4 44554444333210 2223 458999999999999998853211111 12234558899999999977643
No 13
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.5e-06 Score=81.87 Aligned_cols=170 Identities=9% Similarity=0.141 Sum_probs=109.6
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcC----ccccCCCCceEEEE-eCCCCCHHHHHHHHHHHHhh-
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTD----DDVKSRLPFKVWYS-VGKNLDFSTAVQEIRNRRNE- 198 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~-vs~~~~~~~i~~~l~~~l~~- 198 (355)
.-++.+.+++.. +.-....-++|+.|+||||+|+.++.. .....|+|...|.. -+....+..+- ++.+.+..
T Consensus 11 ~~~~~l~~~~~~-~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~~~~~~~ 88 (313)
T PRK05564 11 NIKNRIKNSIIK-NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NIIEEVNKK 88 (313)
T ss_pred HHHHHHHHHHHc-CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHHHHHhcC
Confidence 334556666653 334567889999999999999988762 12345777767765 34445555533 34443332
Q ss_pred cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHh-hhcccCCcccccCCCCChhhHHHHhhhhCC
Q 036086 199 IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVA-TMMMQTVPEAEHLIYFSESNSWSNLNCELP 277 (355)
Q Consensus 199 ~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va-~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 277 (355)
-..+++=++|+|++..-+...++.+...+..-. .++.+|++|.+.+.. .. +.+....+.+.++++++....+.+..
T Consensus 89 p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp-~~t~~il~~~~~~~ll~T-I~SRc~~~~~~~~~~~~~~~~l~~~~- 165 (313)
T PRK05564 89 PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP-KGVFIILLCENLEQILDT-IKSRCQIYKLNRLSKEEIEKFISYKY- 165 (313)
T ss_pred cccCCceEEEEechhhcCHHHHHHHHHHhcCCC-CCeEEEEEeCChHhCcHH-HHhhceeeeCCCcCHHHHHHHHHHHh-
Confidence 234556667777776557888999999998766 788888888665422 22 22323689999999999877776542
Q ss_pred CCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 278 PSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 278 ~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
... .+.....++..|+|.|.-+
T Consensus 166 ~~~-----~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 166 NDI-----KEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred cCC-----CHHHHHHHHHHcCCCHHHH
Confidence 211 1223556778899988544
No 14
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.62 E-value=3.7e-07 Score=81.62 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSK 203 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~k 203 (355)
....+.+.+++. ......+.|+|..|+|||+||+.+++.. .......++++++.-.+ ... .+.+.+.+
T Consensus 23 ~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~------~~~-~~~~~~~~- 90 (226)
T TIGR03420 23 AELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQ------ADP-EVLEGLEQ- 90 (226)
T ss_pred HHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHH------hHH-HHHhhccc-
Confidence 345556666654 2345678899999999999999998742 22233344555432211 011 11122333
Q ss_pred cEEEEEeCCCCCChh-hH-HHHHHhhccC-CCCCcEEEEecCChh---------HhhhcccCCcccccCCCCChhhHHHH
Q 036086 204 RLLFALDDVSHLNDD-NL-ANLRLLVSDM-RLVGFYVLVTTHSTS---------VATMMMQTVPEAEHLIYFSESNSWSN 271 (355)
Q Consensus 204 r~LlVlDdvw~~~~~-~~-~~l~~~l~~~-~~~gs~IlvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~L 271 (355)
.-+||+||+...... .| +.+...+... . .+.++|+||+... +... +... ..+++.++++++-..+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~-~~~~iIits~~~~~~~~~~~~~L~~r-~~~~-~~i~l~~l~~~e~~~~ 167 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVRE-AGGRLLIAGRAAPAQLPLRLPDLRTR-LAWG-LVFQLPPLSDEEKIAA 167 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHH-cCCeEEEECCCChHHCCcccHHHHHH-HhcC-eeEecCCCCHHHHHHH
Confidence 348999999843322 33 3444444321 2 3457888887532 2222 2222 5789999999998998
Q ss_pred hhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 272 LNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 272 f~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
+.+.+-.. . -.--.+....++..++|-|..+
T Consensus 168 l~~~~~~~-~-~~~~~~~l~~L~~~~~gn~r~L 198 (226)
T TIGR03420 168 LQSRAARR-G-LQLPDEVADYLLRHGSRDMGSL 198 (226)
T ss_pred HHHHHHHc-C-CCCCHHHHHHHHHhccCCHHHH
Confidence 87643211 1 1112244455666788877554
No 15
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.61 E-value=1.6e-07 Score=85.23 Aligned_cols=72 Identities=8% Similarity=0.076 Sum_probs=55.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCC--CCHHHHHH-----------------------HHHHH
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKN--LDFSTAVQ-----------------------EIRNR 195 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~-----------------------~l~~~ 195 (355)
-..+.|+|++|+|||||++.+|++.... +|+..+|++++++ +++.++++ .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999976544 8999999998876 78877777 11111
Q ss_pred Hhh-cCCCCcEEEEEeCCC
Q 036086 196 RNE-IPSSKRLLFALDDVS 213 (355)
Q Consensus 196 l~~-~l~~kr~LlVlDdvw 213 (355)
... .-.+++.++++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 111 134899999999986
No 16
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.59 E-value=2.4e-06 Score=87.43 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCC---ceEEEEeCCC---CCHHHH---------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLP---FKVWYSVGKN---LDFSTA--------- 188 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~---~~~~~i--------- 188 (355)
+.....+.+.+. ......+.|+|++|+||||||+.+++......++. ..-|+.+... .+...+
T Consensus 160 s~~~~~l~~~ia--~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~ 237 (615)
T TIGR02903 160 ERAIKALLAKVA--SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVH 237 (615)
T ss_pred cHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCcc
Confidence 445555665554 33455789999999999999999987544333332 2346655421 111111
Q ss_pred ----------HH------------------------------HHHHHHhhcCCCCcEEEEEeCCCCCChhhHHHHHHhhc
Q 036086 189 ----------VQ------------------------------EIRNRRNEIPSSKRLLFALDDVSHLNDDNLANLRLLVS 228 (355)
Q Consensus 189 ----------~~------------------------------~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~ 228 (355)
+. ..+..+.+.+++++++++.|+.|..+...|+.+...+.
T Consensus 238 ~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~ 317 (615)
T TIGR02903 238 DPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFE 317 (615)
T ss_pred HHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcc
Confidence 00 35667777777788888877777655667777776666
Q ss_pred cCCCCCcEEEE--ecCChh-HhhhcccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHHH
Q 036086 229 DMRLVGFYVLV--TTHSTS-VATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLTQ 305 (355)
Q Consensus 229 ~~~~~gs~Ilv--TTR~~~-va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~~ 305 (355)
.+. +...|++ ||++.. +... +......+.+.+++.++.+.++.+.+-..... --.++...|...+..-+.++.
T Consensus 318 ~~~-~~~~VLI~aTt~~~~~l~~a-LrSR~~~i~~~pls~edi~~Il~~~a~~~~v~--ls~eal~~L~~ys~~gRraln 393 (615)
T TIGR02903 318 EGA-PADFVLIGATTRDPEEINPA-LRSRCAEVFFEPLTPEDIALIVLNAAEKINVH--LAAGVEELIARYTIEGRKAVN 393 (615)
T ss_pred cCc-cceEEEEEeccccccccCHH-HHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHCCCcHHHHHH
Confidence 655 5555555 666543 2222 22222467899999999999998865321110 112344444444443355555
Q ss_pred HHH
Q 036086 306 FLL 308 (355)
Q Consensus 306 ~~~ 308 (355)
.++
T Consensus 394 ~L~ 396 (615)
T TIGR02903 394 ILA 396 (615)
T ss_pred HHH
Confidence 443
No 17
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.58 E-value=9.4e-08 Score=90.92 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=55.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC--CHHHHHH--------------------------HHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL--DFSTAVQ--------------------------EIR 193 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~--------------------------~l~ 193 (355)
.-..|+|++|+||||||+.||++.... ||++++||.+++.+ ++.++++ ...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999999965544 89999999999887 6666666 223
Q ss_pred HHHhhcCCCCcEEEEEeCCC
Q 036086 194 NRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 194 ~~l~~~l~~kr~LlVlDdvw 213 (355)
+.+. -.|+..+|++|++.
T Consensus 249 e~~~--e~G~dVlL~iDsIt 266 (416)
T PRK09376 249 KRLV--EHGKDVVILLDSIT 266 (416)
T ss_pred HHHH--HcCCCEEEEEEChH
Confidence 3333 36899999999985
No 18
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.56 E-value=9.7e-07 Score=72.23 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH-----HHHHhhcC
Q 036086 126 SVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEI-----RNRRNEIP 200 (355)
Q Consensus 126 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l-----~~~l~~~l 200 (355)
....+...+.. ...+.+.|+|.+|+|||||++.+++... ..-...+++..++........... ........
T Consensus 6 ~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (151)
T cd00009 6 AIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAE 81 (151)
T ss_pred HHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhc
Confidence 34445555542 2445788999999999999999998432 222344566655544333222111 11122233
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHHhhccC------CCCCcEEEEecCChh
Q 036086 201 SSKRLLFALDDVSHLNDDNLANLRLLVSDM------RLVGFYVLVTTHSTS 245 (355)
Q Consensus 201 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~~~gs~IlvTTR~~~ 245 (355)
..+..++++||++.........+...+... . .+..||+||....
T Consensus 82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDR-ENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccC-CCeEEEEecCccc
Confidence 457889999999843223333343333332 3 4678888887543
No 19
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.56 E-value=5.8e-07 Score=85.30 Aligned_cols=166 Identities=11% Similarity=0.074 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHhcC---CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcC
Q 036086 124 ESSVDSVKNALLRD---GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIP 200 (355)
Q Consensus 124 ~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l 200 (355)
+..++.+..++... ......+-++|++|+||||||+.+.+.. ...+ .++..+ ...... .+...+.. +
T Consensus 31 ~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~---~l~~~l~~-l 100 (328)
T PRK00080 31 EKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPG---DLAAILTN-L 100 (328)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChH---HHHHHHHh-c
Confidence 55555555555431 3445677899999999999999998843 2221 112211 111111 11222221 2
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHHhhccC-------------------CCCCcEEEEecCChhHhhhcccCC-cccccC
Q 036086 201 SSKRLLFALDDVSHLNDDNLANLRLLVSDM-------------------RLVGFYVLVTTHSTSVATMMMQTV-PEAEHL 260 (355)
Q Consensus 201 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-------------------~~~gs~IlvTTR~~~va~~~~~~~-~~~~~l 260 (355)
++..+|++|++..-+....+.+...+.+. . +.+-|..||+...+... ..+. ...+.+
T Consensus 101 -~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~~~l~~~-L~sRf~~~~~l 177 (328)
T PRK00080 101 -EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRAGLLTSP-LRDRFGIVQRL 177 (328)
T ss_pred -ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCcccCCHH-HHHhcCeeeec
Confidence 34568899999744333333333322211 1 23445667775544433 2111 146899
Q ss_pred CCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 261 IYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 261 ~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
.+++.++..+++.+.+-...- .-.++....|+..|+|.|-.+
T Consensus 178 ~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a 219 (328)
T PRK00080 178 EFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIA 219 (328)
T ss_pred CCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHH
Confidence 999999999999987643211 122356788999999999544
No 20
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.55 E-value=5.4e-07 Score=84.53 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHhcC---CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcC
Q 036086 124 ESSVDSVKNALLRD---GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIP 200 (355)
Q Consensus 124 ~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l 200 (355)
+..++.|..++... ...+..+.++|++|+|||+||+.+.+.. ...| ..+..+.......+ ...+.. +
T Consensus 10 ~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~~~l----~~~l~~-~ 79 (305)
T TIGR00635 10 EKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKPGDL----AAILTN-L 79 (305)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCchhH----HHHHHh-c
Confidence 34455555555432 2335567899999999999999998832 2222 11221111111121 122222 1
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHHhhcc-------------------CCCCCcEEEEecCChhHhhhcccCC-cccccC
Q 036086 201 SSKRLLFALDDVSHLNDDNLANLRLLVSD-------------------MRLVGFYVLVTTHSTSVATMMMQTV-PEAEHL 260 (355)
Q Consensus 201 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-------------------~~~~gs~IlvTTR~~~va~~~~~~~-~~~~~l 260 (355)
+...++++|++..-.....+.+...+.. .. +.+-|..||+...+... .-.. ...+++
T Consensus 80 -~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~li~~t~~~~~l~~~-l~sR~~~~~~l 156 (305)
T TIGR00635 80 -EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLP-PFTLVGATTRAGMLTSP-LRDRFGIILRL 156 (305)
T ss_pred -ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCC-CeEEEEecCCccccCHH-HHhhcceEEEe
Confidence 3456889999874444333333332211 01 23445567776544433 2111 146789
Q ss_pred CCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 261 IYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 261 ~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
.+++.++..+++.+.+-.... .--.+....|++.|+|.|-.+
T Consensus 157 ~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~ 198 (305)
T TIGR00635 157 EFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIA 198 (305)
T ss_pred CCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchH
Confidence 999999999999877632211 122355677899999999554
No 21
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=4.9e-06 Score=82.92 Aligned_cols=171 Identities=12% Similarity=0.076 Sum_probs=102.5
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccC----------CCC-------------ceEEEEeCC
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKS----------RLP-------------FKVWYSVGK 181 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----------~F~-------------~~~wv~vs~ 181 (355)
.-+..|.+.+.. +.-...+-++|+.|+||||+|+.+.+.-.... ++. -...+....
T Consensus 28 ~vv~~L~~ai~~-~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas 106 (507)
T PRK06645 28 VLVKVLSYTILN-DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAAS 106 (507)
T ss_pred HHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccC
Confidence 334444444442 22345788999999999999999876322111 111 112223333
Q ss_pred CCCHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEE-EecCChhHhhhcccCCccccc
Q 036086 182 NLDFSTAVQEIRNRRN-EIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVL-VTTHSTSVATMMMQTVPEAEH 259 (355)
Q Consensus 182 ~~~~~~i~~~l~~~l~-~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Il-vTTR~~~va~~~~~~~~~~~~ 259 (355)
...+.++- .+.+... .-..+++-++|+|+++.-+...|+.+...+..-. ..+.+| .||+...+... +.+....+.
T Consensus 107 ~~~vd~Ir-~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp-~~~vfI~aTte~~kI~~t-I~SRc~~~e 183 (507)
T PRK06645 107 KTSVDDIR-RIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP-PHIIFIFATTEVQKIPAT-IISRCQRYD 183 (507)
T ss_pred CCCHHHHH-HHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC-CCEEEEEEeCChHHhhHH-HHhcceEEE
Confidence 33333332 2222222 2345677899999999777788999988877655 555544 56666666555 433336789
Q ss_pred CCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 260 LIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 260 l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
+.+++.++....+.+.+-.... . .-.+....|+..++|-+
T Consensus 184 f~~ls~~el~~~L~~i~~~egi-~-ie~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 184 LRRLSFEEIFKLLEYITKQENL-K-TDIEALRIIAYKSEGSA 223 (507)
T ss_pred ccCCCHHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHHcCCCH
Confidence 9999999999988876532211 1 11234455777888876
No 22
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.49 E-value=6.2e-06 Score=71.75 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=98.3
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc--------------------CCCCceEEEEe-CCCCCHHHH
Q 036086 130 VKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK--------------------SRLPFKVWYSV-GKNLDFSTA 188 (355)
Q Consensus 130 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~v-s~~~~~~~i 188 (355)
+.+.+.. ..-...+-++|+.|+||||+|..+...-.-. .|.+. .++.. +.......+
T Consensus 4 l~~~i~~-~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 4 LKRALEK-GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 4444442 2234678899999999999998875521111 12222 23322 223333333
Q ss_pred HHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCCh-hHhhhcccCCcccccCCCCChh
Q 036086 189 VQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHST-SVATMMMQTVPEAEHLIYFSES 266 (355)
Q Consensus 189 ~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~l~~L~~~ 266 (355)
. .+.+.+... ..+.+-++|+|++..-+...++.+...+.... ..+.+|++|++. .+... +.+....+.+.+++.+
T Consensus 82 ~-~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~~l~~~-i~sr~~~~~~~~~~~~ 158 (188)
T TIGR00678 82 R-ELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPP-PNTLFILITPSPEKLLPT-IRSRCQVLPFPPLSEE 158 (188)
T ss_pred H-HHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCC-CCeEEEEEECChHhChHH-HHhhcEEeeCCCCCHH
Confidence 2 334444332 34567789999998666677888888876655 566666666543 33332 2222368999999999
Q ss_pred hHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCch
Q 036086 267 NSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTS 302 (355)
Q Consensus 267 ~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPl 302 (355)
+....+.+. + - ..+.+..|+..++|-|.
T Consensus 159 ~~~~~l~~~--g-i-----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 159 ALLQWLIRQ--G-I-----SEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHHHHHc--C-C-----CHHHHHHHHHHcCCCcc
Confidence 988888776 2 1 13567788999999874
No 23
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=5.6e-06 Score=84.76 Aligned_cols=177 Identities=12% Similarity=0.082 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc-------------------CCCCceEEEEeCCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK-------------------SRLPFKVWYSVGKNLD 184 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~ 184 (355)
+.-++.|.+++.. +.-...+-++|..|+||||+|+.+.+.-... +.|.-.+++..+.+..
T Consensus 22 e~Vv~~L~~aL~~-gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rg 100 (830)
T PRK07003 22 EHVVRALTHALDG-GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRG 100 (830)
T ss_pred HHHHHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccccccc
Confidence 4445566666653 2224466799999999999998765422111 1222244554444433
Q ss_pred HHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCcccccCCC
Q 036086 185 FSTAVQEIRNRRN-EIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAEHLIY 262 (355)
Q Consensus 185 ~~~i~~~l~~~l~-~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~l~~ 262 (355)
+.++- ++.+.+. .-..++.-++|||++...+...|+.|+..+..-. ...++|+||.+ ..+... +-+....+++++
T Consensus 101 VDdIR-eLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP-~~v~FILaTtd~~KIp~T-IrSRCq~f~Fk~ 177 (830)
T PRK07003 101 VDEMA-ALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP-PHVKFILATTDPQKIPVT-VLSRCLQFNLKQ 177 (830)
T ss_pred HHHHH-HHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC-CCeEEEEEECChhhccch-hhhheEEEecCC
Confidence 33332 3333332 2234555688999999777788998888776644 56676666554 444433 333336899999
Q ss_pred CChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc-hHHHH
Q 036086 263 FSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT-SLTQF 306 (355)
Q Consensus 263 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP-la~~~ 306 (355)
++.++..+.+.+..-.. .. ..-.+....|++.|+|-+ -++..
T Consensus 178 Ls~eeIv~~L~~Il~~E-gI-~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 178 MPAGHIVSHLERILGEE-RI-AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred cCHHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999988887754221 11 112345566778887755 44443
No 24
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=5.8e-06 Score=82.59 Aligned_cols=178 Identities=13% Similarity=0.115 Sum_probs=105.5
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCc------------------eEEEEeCCCCCHH
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPF------------------KVWYSVGKNLDFS 186 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~------------------~~wv~vs~~~~~~ 186 (355)
.-++.|.+++.. ..-...+-++|+.|+||||+|+.+.+.....+.+.. ..++..+....+.
T Consensus 21 ~v~~~L~~~i~~-~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd 99 (504)
T PRK14963 21 HVKEVLLAALRQ-GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVE 99 (504)
T ss_pred HHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHH
Confidence 334445555543 223456789999999999999988764322222221 2233333333332
Q ss_pred HHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEE-ecCChhHhhhcccCCcccccCCCCC
Q 036086 187 TAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLV-TTHSTSVATMMMQTVPEAEHLIYFS 264 (355)
Q Consensus 187 ~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~l~~L~ 264 (355)
. .+++...+.. -..+++-++|+|+++..+...++.|...+.... ..+.+|+ |+....+... +.+....+++.+++
T Consensus 100 ~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-~~t~~Il~t~~~~kl~~~-I~SRc~~~~f~~ls 176 (504)
T PRK14963 100 D-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-EHVIFILATTEPEKMPPT-ILSRTQHFRFRRLT 176 (504)
T ss_pred H-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-CCEEEEEEcCChhhCChH-HhcceEEEEecCCC
Confidence 2 2234333332 234567799999998767778888888876654 4445444 4444454443 33333689999999
Q ss_pred hhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc-hHHHHHH
Q 036086 265 ESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT-SLTQFLL 308 (355)
Q Consensus 265 ~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP-la~~~~~ 308 (355)
.++....+.+.+-...-. .-.+....|+..++|-+ .++..+.
T Consensus 177 ~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~aln~Le 219 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDAESLLE 219 (504)
T ss_pred HHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999988765322111 12345566778888877 3434443
No 25
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.45 E-value=3e-06 Score=87.85 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=85.2
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-DFSTAVQEIRNRRNEIP--SSKRLLFALDDVSHL 215 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~l~~~l~~~l--~~kr~LlVlDdvw~~ 215 (355)
+...-+-++|++|+||||||+.+++ ....+| +.++... .+.++ +.......+.+ .+++.+++|||++.-
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f-----~~lna~~~~i~di-r~~i~~a~~~l~~~~~~~IL~IDEIh~L 121 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIAN--HTRAHF-----SSLNAVLAGVKDL-RAEVDRAKERLERHGKRTILFIDEVHRF 121 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH--HhcCcc-----eeehhhhhhhHHH-HHHHHHHHHHhhhcCCceEEEEeChhhC
Confidence 4455678999999999999999998 344444 2222111 11111 12222222222 246789999999866
Q ss_pred ChhhHHHHHHhhccCCCCCcEEEE--ecCChh--HhhhcccCCcccccCCCCChhhHHHHhhhhCC------CCCCCcch
Q 036086 216 NDDNLANLRLLVSDMRLVGFYVLV--TTHSTS--VATMMMQTVPEAEHLIYFSESNSWSNLNCELP------PSSQEAHR 285 (355)
Q Consensus 216 ~~~~~~~l~~~l~~~~~~gs~Ilv--TTR~~~--va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af------~~~~~~~~ 285 (355)
+...++.+...+. .|+.+++ ||.+.. +... .-+....+.+++|+.++...++.+.+- +... -.-
T Consensus 122 n~~qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~a-L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~-v~I 195 (725)
T PRK13341 122 NKAQQDALLPWVE----NGTITLIGATTENPYFEVNKA-LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRK-VDL 195 (725)
T ss_pred CHHHHHHHHHHhc----CceEEEEEecCCChHhhhhhH-hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcc-cCC
Confidence 6667777765443 4555555 344432 2222 222226899999999999999887542 1111 111
Q ss_pred HHHHHHHHHHhcCCC
Q 036086 286 VEDLETGSAMDEEGV 300 (355)
Q Consensus 286 ~~~~~~~i~~~c~Gl 300 (355)
-++....|+..|.|-
T Consensus 196 ~deaL~~La~~s~GD 210 (725)
T PRK13341 196 EPEAEKHLVDVANGD 210 (725)
T ss_pred CHHHHHHHHHhCCCC
Confidence 234556666777664
No 26
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=9.4e-06 Score=78.12 Aligned_cols=173 Identities=15% Similarity=0.106 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccC-------------------CCCceEEEEeCCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKS-------------------RLPFKVWYSVGKNLD 184 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~ 184 (355)
+.-++.+.+.+.. +.-...+-++|+.|+||||+|+.+.+.-.... .+....++..+....
T Consensus 22 ~~~~~~l~~~~~~-~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~ 100 (363)
T PRK14961 22 KHIVTAISNGLSL-GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTK 100 (363)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCC
Confidence 3444555555553 23345778999999999999998876321111 111122333222223
Q ss_pred HHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCcccccCCC
Q 036086 185 FSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAEHLIY 262 (355)
Q Consensus 185 ~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~l~~ 262 (355)
+.. .+++.+.+... ..+++-++|+|++..-+...++.+...+.... ...++|++|.+ ..+... +.+....+++.+
T Consensus 101 v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~-~~~~fIl~t~~~~~l~~t-I~SRc~~~~~~~ 177 (363)
T PRK14961 101 VEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP-QHIKFILATTDVEKIPKT-ILSRCLQFKLKI 177 (363)
T ss_pred HHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC-CCeEEEEEcCChHhhhHH-HHhhceEEeCCC
Confidence 322 22333333222 23456699999998666667888887776655 56666666543 334333 222226899999
Q ss_pred CChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCch
Q 036086 263 FSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTS 302 (355)
Q Consensus 263 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPl 302 (355)
++.++....+.+.+-.... .--++....|+..++|-|-
T Consensus 178 l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R 215 (363)
T PRK14961 178 ISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMR 215 (363)
T ss_pred CCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 9999988877664422111 1123455667788888773
No 27
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=5.8e-06 Score=83.49 Aligned_cols=174 Identities=13% Similarity=0.096 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc------------------------CCCCceEEEEe
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK------------------------SRLPFKVWYSV 179 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~------------------------~~F~~~~wv~v 179 (355)
+.-++.|.+++.. +.-...+-++|..|+||||+|+.+.+.-... +.|.-.+++..
T Consensus 22 e~vv~~L~~al~~-gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdA 100 (700)
T PRK12323 22 EHVVRALTHALEQ-QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDA 100 (700)
T ss_pred HHHHHHHHHHHHh-CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecc
Confidence 4444556666653 2234567889999999999998875422110 11222344444
Q ss_pred CCCCCHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcE-EEEecCChhHhhhcccCCccc
Q 036086 180 GKNLDFSTAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFY-VLVTTHSTSVATMMMQTVPEA 257 (355)
Q Consensus 180 s~~~~~~~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~-IlvTTR~~~va~~~~~~~~~~ 257 (355)
+.+..+.++- ++.+.+.. -..++.-++|+|++...+...++.|+..+..-. .+.+ |++||....+... +-+....
T Consensus 101 as~~gVDdIR-eLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP-~~v~FILaTtep~kLlpT-IrSRCq~ 177 (700)
T PRK12323 101 ASNRGVDEMA-QLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP-EHVKFILATTDPQKIPVT-VLSRCLQ 177 (700)
T ss_pred cccCCHHHHH-HHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC-CCceEEEEeCChHhhhhH-HHHHHHh
Confidence 4444444433 33333322 235666799999999877888888888776543 3444 5666666666554 3333368
Q ss_pred ccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchH
Q 036086 258 EHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSL 303 (355)
Q Consensus 258 ~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla 303 (355)
++++.++.++..+.+.+.+-.. ... .-......|++.++|.|..
T Consensus 178 f~f~~ls~eei~~~L~~Il~~E-gi~-~d~eAL~~IA~~A~Gs~Rd 221 (700)
T PRK12323 178 FNLKQMPPGHIVSHLDAILGEE-GIA-HEVNALRLLAQAAQGSMRD 221 (700)
T ss_pred cccCCCChHHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHcCCCHHH
Confidence 9999999999988877653211 111 1123446678899998843
No 28
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.41 E-value=7.2e-06 Score=77.82 Aligned_cols=171 Identities=12% Similarity=0.083 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCc-eEEEEeCCCC-----------CH------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPF-KVWYSVGKNL-----------DF------ 185 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~-----------~~------ 185 (355)
+..++.+.+++.. +..+.+-++|+.|+||||+|+.+.+.-. ...+.. .+.++++... +.
T Consensus 21 ~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (337)
T PRK12402 21 DEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGT 97 (337)
T ss_pred HHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcCcchhhhhhh
Confidence 4555666666653 3444577999999999999998876321 111211 2333333211 00
Q ss_pred --------HHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCCh-hHhhhcccCC
Q 036086 186 --------STAVQEIRNRRNEIP--SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHST-SVATMMMQTV 254 (355)
Q Consensus 186 --------~~i~~~l~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~-~va~~~~~~~ 254 (355)
...++.+........ .+.+-+||+||+..-.......+...+.... ..+++|+||... .+... +...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~-~~~~~Il~~~~~~~~~~~-L~sr 175 (337)
T PRK12402 98 DKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS-RTCRFIIATRQPSKLIPP-IRSR 175 (337)
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc-CCCeEEEEeCChhhCchh-hcCC
Confidence 111112222222221 2445589999997555555566666655444 456777776543 22222 2222
Q ss_pred cccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 255 PEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 255 ~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
...+.+.+++.++....+.+.+-...-. --.+....++..++|-+
T Consensus 176 ~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdl 220 (337)
T PRK12402 176 CLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDL 220 (337)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 2578889999999888887754221111 12345556667777755
No 29
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.40 E-value=4.8e-06 Score=80.05 Aligned_cols=182 Identities=16% Similarity=0.136 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHhcCccc-cCCC---CceEEEEeCCCCCHHHHHHHHHHHH-
Q 036086 124 ESSVDSVKNALLRD--GNTVRFIHIVGVSGTDETAIAHRVFTDDDV-KSRL---PFKVWYSVGKNLDFSTAVQEIRNRR- 196 (355)
Q Consensus 124 ~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~-~~~F---~~~~wv~vs~~~~~~~i~~~l~~~l- 196 (355)
+.+.++|..+|... +.....+.|+|++|+|||++++.+++...- .... -..+|+......+...++..+...+
T Consensus 21 e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 100 (365)
T TIGR02928 21 DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLR 100 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 88888888888643 334557899999999999999999874211 0111 1234666555444444444222222
Q ss_pred --------------------hhcC--CCCcEEEEEeCCCCCC---hhhHHHHHHhh-ccCCCCCc--EEEEecCChhHhh
Q 036086 197 --------------------NEIP--SSKRLLFALDDVSHLN---DDNLANLRLLV-SDMRLVGF--YVLVTTHSTSVAT 248 (355)
Q Consensus 197 --------------------~~~l--~~kr~LlVlDdvw~~~---~~~~~~l~~~l-~~~~~~gs--~IlvTTR~~~va~ 248 (355)
.+.+ .+++++||||+++.-. .+.+..+.... .... .++ .+|.+|.......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~-~~~~v~lI~i~n~~~~~~ 179 (365)
T TIGR02928 101 GSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDL-DNAKVGVIGISNDLKFRE 179 (365)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCC-CCCeEEEEEEECCcchHh
Confidence 2223 2567899999998431 11122222110 1111 222 3444444333221
Q ss_pred hccc-----CC-cccccCCCCChhhHHHHhhhhC---CCCCCCcchHHHHHHHHHHhcCCCc-hHHHHH
Q 036086 249 MMMQ-----TV-PEAEHLIYFSESNSWSNLNCEL---PPSSQEAHRVEDLETGSAMDEEGVT-SLTQFL 307 (355)
Q Consensus 249 ~~~~-----~~-~~~~~l~~L~~~~s~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~c~GlP-la~~~~ 307 (355)
. +. .. ...+.+.|++.++..+++..++ +......++.......++..+.|-| .|+..+
T Consensus 180 ~-l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 180 N-LDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred h-cCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1 11 10 1468899999999999998775 2222222333334445667777887 444443
No 30
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.38 E-value=4.2e-06 Score=73.90 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=89.5
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCh
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLND 217 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~~ 217 (355)
.+.+.-+-.+|++|+||||||..|.+ .....|. +.+.+.--... ++...+.+ ++ ++-+|.+|.+..-+.
T Consensus 47 ~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~~----dl~~il~~-l~-~~~ILFIDEIHRlnk 115 (233)
T PF05496_consen 47 GEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKAG----DLAAILTN-LK-EGDILFIDEIHRLNK 115 (233)
T ss_dssp TS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SCH----HHHHHHHT----TT-EEEECTCCC--H
T ss_pred CCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhHH----HHHHHHHh-cC-CCcEEEEechhhccH
Confidence 45677788999999999999999998 4444442 23221100111 23333332 33 456788899987777
Q ss_pred hhHHHHHHhhccCC-------CCC-----------cEEEEecCChhHhhhcccCC-cccccCCCCChhhHHHHhhhhCCC
Q 036086 218 DNLANLRLLVSDMR-------LVG-----------FYVLVTTHSTSVATMMMQTV-PEAEHLIYFSESNSWSNLNCELPP 278 (355)
Q Consensus 218 ~~~~~l~~~l~~~~-------~~g-----------s~IlvTTR~~~va~~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~ 278 (355)
.+-+.+..+..++. +++ +-|=.|||...+... .... .-+.+|+..+.+|-..+..+.+--
T Consensus 116 ~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~p-LrdRFgi~~~l~~Y~~~el~~Iv~r~a~~ 194 (233)
T PF05496_consen 116 AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSP-LRDRFGIVLRLEFYSEEELAKIVKRSARI 194 (233)
T ss_dssp HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHC-CCTTSSEEEE----THHHHHHHHHHCCHC
T ss_pred HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchh-HHhhcceecchhcCCHHHHHHHHHHHHHH
Confidence 66666766655321 011 123458887666655 4333 134589999999999999876522
Q ss_pred CCCCcchHHHHHHHHHHhcCCCc-hHHHHHHhh
Q 036086 279 SSQEAHRVEDLETGSAMDEEGVT-SLTQFLLDI 310 (355)
Q Consensus 279 ~~~~~~~~~~~~~~i~~~c~GlP-la~~~~~~~ 310 (355)
- .-+--++.+.+|+.+|.|-| .|.+.+...
T Consensus 195 l--~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 195 L--NIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp T--T-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred h--CCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 1 12334578889999999999 555555543
No 31
>PRK08727 hypothetical protein; Validated
Probab=98.37 E-value=3.1e-06 Score=76.37 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=85.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-hhhH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLN-DDNL 220 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~-~~~~ 220 (355)
..+.|+|..|+|||+|++.+++. ...+.....++++.+ ....+...+... .+.-+||+||+.... ...|
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~~~~~~l--~~~dlLiIDDi~~l~~~~~~ 111 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLRDALEAL--EGRSLVALDGLESIAGQRED 111 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHHHHHHHH--hcCCEEEEeCcccccCChHH
Confidence 45999999999999999999873 333333445666433 111111222211 133599999997422 2234
Q ss_pred HH-HHHhhcc-CCCCCcEEEEecCCh---------hHhhhcccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHH
Q 036086 221 AN-LRLLVSD-MRLVGFYVLVTTHST---------SVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDL 289 (355)
Q Consensus 221 ~~-l~~~l~~-~~~~gs~IlvTTR~~---------~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~ 289 (355)
.. +...+.. .. +|..||+||+.. ++... ++.. ..+++++++.++-..++.+.+....- .-.+++
T Consensus 112 ~~~lf~l~n~~~~-~~~~vI~ts~~~p~~l~~~~~dL~SR-l~~~-~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~ 186 (233)
T PRK08727 112 EVALFDFHNRARA-AGITLLYTARQMPDGLALVLPDLRSR-LAQC-IRIGLPVLDDVARAAVLRERAQRRGL--ALDEAA 186 (233)
T ss_pred HHHHHHHHHHHHH-cCCeEEEECCCChhhhhhhhHHHHHH-HhcC-ceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHH
Confidence 33 2222222 12 466799999852 22222 3333 57899999999999999986643211 122355
Q ss_pred HHHHHHhcCCCc
Q 036086 290 ETGSAMDEEGVT 301 (355)
Q Consensus 290 ~~~i~~~c~GlP 301 (355)
..-++..|.|-.
T Consensus 187 ~~~La~~~~rd~ 198 (233)
T PRK08727 187 IDWLLTHGEREL 198 (233)
T ss_pred HHHHHHhCCCCH
Confidence 566777777655
No 32
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.32 E-value=2.5e-06 Score=79.48 Aligned_cols=125 Identities=15% Similarity=0.230 Sum_probs=85.1
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC----CCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK----NLDFSTAVQEIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.++-+..||++|+||||||+.+.+..+-.. ..+|..|- ..++.+++++.+... .+.++|..|.+|.|.
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~~--~l~krkTilFiDEiH 232 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNEK--SLTKRKTILFIDEIH 232 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHHH--hhhcceeEEEeHHhh
Confidence 56677788999999999999999998544333 44676664 345555554333222 245788999999998
Q ss_pred CCChhhHHHHHHhhccCCCCCcEEEE--ecCChhH---hhhcccCCcccccCCCCChhhHHHHhhh
Q 036086 214 HLNDDNLANLRLLVSDMRLVGFYVLV--TTHSTSV---ATMMMQTVPEAEHLIYFSESNSWSNLNC 274 (355)
Q Consensus 214 ~~~~~~~~~l~~~l~~~~~~gs~Ilv--TTR~~~v---a~~~~~~~~~~~~l~~L~~~~s~~Lf~~ 274 (355)
.-+..+-+.+ ||.-. +|+-++| ||.+.+. +.. +... .++-|++|..++-..++.+
T Consensus 233 RFNksQQD~f---LP~VE-~G~I~lIGATTENPSFqln~aL-lSRC-~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 233 RFNKSQQDTF---LPHVE-NGDITLIGATTENPSFQLNAAL-LSRC-RVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred hhhhhhhhcc---cceec-cCceEEEecccCCCccchhHHH-Hhcc-ceeEeccCCHHHHHHHHHH
Confidence 6555444444 56555 7887666 7776643 112 2333 6899999999999888877
No 33
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.7e-05 Score=82.74 Aligned_cols=171 Identities=13% Similarity=0.097 Sum_probs=101.7
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCC-------------------CCceEEEEeCCCCCH
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSR-------------------LPFKVWYSVGKNLDF 185 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~vs~~~~~ 185 (355)
.-++.|.+++.. +.-...+-++|+.|+||||+|+.+.+.-..... |.-.+++..+....+
T Consensus 23 ~Iv~~LknaI~~-~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kV 101 (944)
T PRK14949 23 HVLHALTNALTQ-QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKV 101 (944)
T ss_pred HHHHHHHHHHHh-CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCH
Confidence 344555566553 222445689999999999999998763321111 111233332222222
Q ss_pred HHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEE-ecCChhHhhhcccCCcccccCCCC
Q 036086 186 STAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLV-TTHSTSVATMMMQTVPEAEHLIYF 263 (355)
Q Consensus 186 ~~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~l~~L 263 (355)
.. ++++.+.+.. ...+++-++|||++..-+...++.|+..+-.-. ...++|+ ||....+... +-+....|++++|
T Consensus 102 Dd-IReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP-~~vrFILaTTe~~kLl~T-IlSRCq~f~fkpL 178 (944)
T PRK14949 102 DD-TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP-EHVKFLLATTDPQKLPVT-VLSRCLQFNLKSL 178 (944)
T ss_pred HH-HHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC-CCeEEEEECCCchhchHH-HHHhheEEeCCCC
Confidence 22 2344444332 234677899999998777888888888876544 4455444 5555555433 2222268999999
Q ss_pred ChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 264 SESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 264 ~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
+.++....+.+.+-.. . -..-.+....|+..++|.|
T Consensus 179 s~eEI~~~L~~il~~E-g-I~~edeAL~lIA~~S~Gd~ 214 (944)
T PRK14949 179 TQDEIGTQLNHILTQE-Q-LPFEAEALTLLAKAANGSM 214 (944)
T ss_pred CHHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHcCCCH
Confidence 9999988887643211 1 1112345566778888877
No 34
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.31 E-value=9.1e-06 Score=73.39 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=85.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-hhh
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLN-DDN 219 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~-~~~ 219 (355)
.+.+.|+|+.|+|||+|++.+++. ....-....++++...... ..++.+.+.+ --+|++||+.... ...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~~---~~~~~~~~~~-----~dlliiDdi~~~~~~~~ 114 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAWF---VPEVLEGMEQ-----LSLVCIDNIECIAGDEL 114 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhhh---hHHHHHHhhh-----CCEEEEeChhhhcCCHH
Confidence 357889999999999999998873 2222223446655431110 0122222221 2489999996422 234
Q ss_pred HHHH-HHhhccC-CCCC-cEEEEecCCh---------hHhhhcccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHH
Q 036086 220 LANL-RLLVSDM-RLVG-FYVLVTTHST---------SVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVE 287 (355)
Q Consensus 220 ~~~l-~~~l~~~-~~~g-s~IlvTTR~~---------~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~ 287 (355)
|+.. ...+... . .| .++|+||+.. ++... +... .++++.++++++-.+++.+++-... -.-.+
T Consensus 115 ~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SR-l~~g-~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~ 189 (235)
T PRK08084 115 WEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASR-LDWG-QIYKLQPLSDEEKLQALQLRARLRG--FELPE 189 (235)
T ss_pred HHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHH-HhCC-ceeeecCCCHHHHHHHHHHHHHHcC--CCCCH
Confidence 5432 2223221 1 23 3699998754 33333 4444 6899999999999999887653221 11234
Q ss_pred HHHHHHHHhcCCCchH
Q 036086 288 DLETGSAMDEEGVTSL 303 (355)
Q Consensus 288 ~~~~~i~~~c~GlPla 303 (355)
++..-++..|.|-.-+
T Consensus 190 ~v~~~L~~~~~~d~r~ 205 (235)
T PRK08084 190 DVGRFLLKRLDREMRT 205 (235)
T ss_pred HHHHHHHHhhcCCHHH
Confidence 6666677777765533
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=98.30 E-value=1.9e-05 Score=74.70 Aligned_cols=176 Identities=10% Similarity=0.066 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCc-eEEEEeCCCCCHHHHHHHHHHHHhh----c
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPF-KVWYSVGKNLDFSTAVQEIRNRRNE----I 199 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~l~~~l~~----~ 199 (355)
+-++.|.+++. .+..+-+-++|++|+||||+|+.+.+.-. ...|.. .+=+..|...... ..++....+.. .
T Consensus 20 ~~~~~L~~~~~--~~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~~~~~~~ 95 (319)
T PLN03025 20 DAVSRLQVIAR--DGNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNKIKMFAQKKVTL 95 (319)
T ss_pred HHHHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHHHHHHHhccccC
Confidence 33444555444 33344466899999999999999876321 112221 1112223322222 22222222111 1
Q ss_pred CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCcccccCCCCChhhHHHHhhhhCCC
Q 036086 200 PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAEHLIYFSESNSWSNLNCELPP 278 (355)
Q Consensus 200 l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~ 278 (355)
..++.-+++||++..-+....+.+...+..-. ..+++++++.. ..+-.. ..+....+++.++++++....+...+-.
T Consensus 96 ~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-~~t~~il~~n~~~~i~~~-L~SRc~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 96 PPGRHKIVILDEADSMTSGAQQALRRTMEIYS-NTTRFALACNTSSKIIEP-IQSRCAIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred CCCCeEEEEEechhhcCHHHHHHHHHHHhccc-CCceEEEEeCCccccchh-HHHhhhcccCCCCCHHHHHHHHHHHHHH
Confidence 12456799999998666666666666554433 45666666543 233222 2222257999999999998888766522
Q ss_pred CCCCcchHHHHHHHHHHhcCCCc-hHHHHHH
Q 036086 279 SSQEAHRVEDLETGSAMDEEGVT-SLTQFLL 308 (355)
Q Consensus 279 ~~~~~~~~~~~~~~i~~~c~GlP-la~~~~~ 308 (355)
..- . --.+....|+..|+|-+ .++..+.
T Consensus 174 egi-~-i~~~~l~~i~~~~~gDlR~aln~Lq 202 (319)
T PLN03025 174 EKV-P-YVPEGLEAIIFTADGDMRQALNNLQ 202 (319)
T ss_pred cCC-C-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 211 1 11244566777887765 4444443
No 36
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=2.5e-05 Score=78.42 Aligned_cols=178 Identities=13% Similarity=0.111 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc-------------------cCCCCceEEEEeCCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV-------------------KSRLPFKVWYSVGKNLD 184 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~wv~vs~~~~ 184 (355)
+..++.|.+.+.. +.-...+-++|+.|+||||+|+.+.+.-.. ...|...+++.......
T Consensus 22 ~~~v~~L~~~i~~-~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~g 100 (546)
T PRK14957 22 QHALNSLVHALET-QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTG 100 (546)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccC
Confidence 4445556666653 223456778999999999999988652111 01233334444333344
Q ss_pred HHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEE-EecCChhHhhhcccCCcccccCCC
Q 036086 185 FSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVL-VTTHSTSVATMMMQTVPEAEHLIY 262 (355)
Q Consensus 185 ~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Il-vTTR~~~va~~~~~~~~~~~~l~~ 262 (355)
+.++ +.+.+.+... ..+++-++|+|++..-+...++.|+..+.... ..+.+| +||....+... +.+....+++.+
T Consensus 101 vd~i-r~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-~~v~fIL~Ttd~~kil~t-I~SRc~~~~f~~ 177 (546)
T PRK14957 101 VEET-KEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-EYVKFILATTDYHKIPVT-ILSRCIQLHLKH 177 (546)
T ss_pred HHHH-HHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC-CCceEEEEECChhhhhhh-HHHheeeEEeCC
Confidence 4332 2333333322 34567799999998777778888888887654 455544 56655445433 333336899999
Q ss_pred CChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc-hHHHHH
Q 036086 263 FSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT-SLTQFL 307 (355)
Q Consensus 263 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP-la~~~~ 307 (355)
++.++....+.+.+-.. .. ..-+.....|+..++|-+ .|+..+
T Consensus 178 Ls~~eI~~~L~~il~~e-gi-~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 178 ISQADIKDQLKIILAKE-NI-NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CCHHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99998876666532111 11 112234455677777755 344333
No 37
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.8e-05 Score=77.13 Aligned_cols=164 Identities=13% Similarity=0.083 Sum_probs=93.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccC-------------------CCCceEEEEeCCCCCHHHHHHHHHHHHhh-cC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKS-------------------RLPFKVWYSVGKNLDFSTAVQEIRNRRNE-IP 200 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~~~~i~~~l~~~l~~-~l 200 (355)
...+-++|+.|+||||+|+.+.+.-.... .+.....+..+.......+ +.+.+.... ..
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~i-R~i~~~~~~~p~ 114 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEI-RKIRDAVGYRPM 114 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHH-HHHHHHHhhChh
Confidence 35678999999999999999865321110 0111233344333333333 233333332 13
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEE-EecCChhHhhhcccCCcccccCCCCChhhHHHHhhhhCCCC
Q 036086 201 SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVL-VTTHSTSVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPS 279 (355)
Q Consensus 201 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Il-vTTR~~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~ 279 (355)
.+++-++|+|++..-+....+.+...+.... ....+| .||....+... +.+....+.+.+++.++....+.+.+-..
T Consensus 115 ~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~-~~vv~Ilattn~~kl~~~-L~SR~~vv~f~~l~~~el~~~L~~i~~~e 192 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTKEAFNALLKTLEEPP-SHVVFVLATTNLEKVPPT-IISRCQVIEFRNISDELIIKRLQEVAEAE 192 (472)
T ss_pred cCCeEEEEEEChHHhHHHHHHHHHHHHHhCC-CcEEEEEEeCChHhhhHH-HhcCcEEEEECCccHHHHHHHHHHHHHHc
Confidence 4567799999997555556677777766543 334444 34543445444 33333789999999999888887765321
Q ss_pred CCCcchHHHHHHHHHHhc-CCCchHHHHHHh
Q 036086 280 SQEAHRVEDLETGSAMDE-EGVTSLTQFLLD 309 (355)
Q Consensus 280 ~~~~~~~~~~~~~i~~~c-~GlPla~~~~~~ 309 (355)
.- .--.+....|+..+ |+++.++..+..
T Consensus 193 gi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 193 GI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 11 11124455566666 455666655543
No 38
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.9e-05 Score=78.68 Aligned_cols=172 Identities=13% Similarity=0.075 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc-------------------CCCCceEEEEeCCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK-------------------SRLPFKVWYSVGKNLD 184 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~ 184 (355)
+..++.|.+++..+ .-...+-++|+.|+||||+|+.+.+.-... +.|.-.+.+..+....
T Consensus 21 e~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~ 99 (702)
T PRK14960 21 NHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTK 99 (702)
T ss_pred HHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCC
Confidence 44556666666642 234677899999999999999876532111 1122223344333333
Q ss_pred HHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCcccccCCC
Q 036086 185 FSTAVQEIRNRRN-EIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAEHLIY 262 (355)
Q Consensus 185 ~~~i~~~l~~~l~-~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~l~~ 262 (355)
+..+ +.+...+. .-..+++-++|+|++..-+...++.|...+.... .+.++|++|.+ ..+... .-+....+++++
T Consensus 100 VddI-Reli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP-~~v~FILaTtd~~kIp~T-IlSRCq~feFkp 176 (702)
T PRK14960 100 VEDT-RELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP-EHVKFLFATTDPQKLPIT-VISRCLQFTLRP 176 (702)
T ss_pred HHHH-HHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC-CCcEEEEEECChHhhhHH-HHHhhheeeccC
Confidence 3332 23333222 1234566789999998777778888888776655 55666666654 333322 222226899999
Q ss_pred CChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 263 FSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 263 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
|+.++....+.+.+-...- ..-......|+..++|-+
T Consensus 177 Ls~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdL 213 (702)
T PRK14960 177 LAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSL 213 (702)
T ss_pred CCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 9999988877665422111 111234455667777766
No 39
>PRK09087 hypothetical protein; Validated
Probab=98.26 E-value=7.6e-06 Score=73.41 Aligned_cols=138 Identities=11% Similarity=0.029 Sum_probs=80.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC--Chh
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHL--NDD 218 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~--~~~ 218 (355)
-+.+.|+|..|+|||+|++.+++... ..+++.. .+.. +....+. + -+|++||+... +..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~-~~~~-----~~~~~~~----~--~~l~iDDi~~~~~~~~ 104 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN-EIGS-----DAANAAA----E--GPVLIEDIDAGGFDET 104 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH-Hcch-----HHHHhhh----c--CeEEEECCCCCCCCHH
Confidence 35689999999999999999887421 1244322 1111 1111111 1 37888999632 222
Q ss_pred hHHHHHHhhccCCCCCcEEEEecCC---------hhHhhhcccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHH
Q 036086 219 NLANLRLLVSDMRLVGFYVLVTTHS---------TSVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDL 289 (355)
Q Consensus 219 ~~~~l~~~l~~~~~~gs~IlvTTR~---------~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~ 289 (355)
.+-.+...+.. .|..||+|++. ++.... +... .++++++++.++-..++++.+-.. . -.-.+++
T Consensus 105 ~lf~l~n~~~~---~g~~ilits~~~p~~~~~~~~dL~SR-l~~g-l~~~l~~pd~e~~~~iL~~~~~~~-~-~~l~~ev 177 (226)
T PRK09087 105 GLFHLINSVRQ---AGTSLLMTSRLWPSSWNVKLPDLKSR-LKAA-TVVEIGEPDDALLSQVIFKLFADR-Q-LYVDPHV 177 (226)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCChHHhccccccHHHH-HhCC-ceeecCCCCHHHHHHHHHHHHHHc-C-CCCCHHH
Confidence 22222222222 46679998873 333333 4444 689999999999999998876221 1 1122455
Q ss_pred HHHHHHhcCCCchHH
Q 036086 290 ETGSAMDEEGVTSLT 304 (355)
Q Consensus 290 ~~~i~~~c~GlPla~ 304 (355)
..-|++.+.|-+-++
T Consensus 178 ~~~La~~~~r~~~~l 192 (226)
T PRK09087 178 VYYLVSRMERSLFAA 192 (226)
T ss_pred HHHHHHHhhhhHHHH
Confidence 666667776666443
No 40
>PRK04195 replication factor C large subunit; Provisional
Probab=98.26 E-value=1.8e-05 Score=79.10 Aligned_cols=166 Identities=12% Similarity=0.106 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh--hc
Q 036086 124 ESSVDSVKNALLRD--GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRN--EI 199 (355)
Q Consensus 124 ~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~--~~ 199 (355)
+..++.+.+|+..- +...+.+-|+|++|+||||+|+.+.++.. |+. +-++.|...+...+.. +..... ..
T Consensus 20 ~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~~~~i~~-~i~~~~~~~s 93 (482)
T PRK04195 20 EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRTADVIER-VAGEAATSGS 93 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEcccccccHHHHHH-HHHHhhccCc
Confidence 56677788887643 23367889999999999999999988431 222 2234444333332222 211111 12
Q ss_pred CC-CCcEEEEEeCCCCCCh----hhHHHHHHhhccCCCCCcEEEEecCCh-hHhh-hcccCCcccccCCCCChhhHHHHh
Q 036086 200 PS-SKRLLFALDDVSHLND----DNLANLRLLVSDMRLVGFYVLVTTHST-SVAT-MMMQTVPEAEHLIYFSESNSWSNL 272 (355)
Q Consensus 200 l~-~kr~LlVlDdvw~~~~----~~~~~l~~~l~~~~~~gs~IlvTTR~~-~va~-~~~~~~~~~~~l~~L~~~~s~~Lf 272 (355)
+. .++-+||+|++..... ..+..+...+... +..||+|+.+. .... . .......+.+.+++.++....+
T Consensus 94 l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~---~~~iIli~n~~~~~~~k~-Lrsr~~~I~f~~~~~~~i~~~L 169 (482)
T PRK04195 94 LFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA---KQPIILTANDPYDPSLRE-LRNACLMIEFKRLSTRSIVPVL 169 (482)
T ss_pred ccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC---CCCEEEeccCccccchhh-HhccceEEEecCCCHHHHHHHH
Confidence 22 3678999999975322 3456666555532 33466655332 2221 2 2222257889999999888877
Q ss_pred hhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 273 NCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 273 ~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
.+.+....-. --.++...|+..|+|-.
T Consensus 170 ~~i~~~egi~--i~~eaL~~Ia~~s~GDl 196 (482)
T PRK04195 170 KRICRKEGIE--CDDEALKEIAERSGGDL 196 (482)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 7654322111 11245566667776654
No 41
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.25 E-value=3.5e-05 Score=72.47 Aligned_cols=172 Identities=12% Similarity=0.091 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEe--CCCCCHHHHHHHHHHHHhhc-C
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSV--GKNLDFSTAVQEIRNRRNEI-P 200 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~l~~~l~~~-l 200 (355)
++..+.+.+++.. +..+.+-++|..|+||||+|+.+.+... ...+. ..++.+ +.......+...+....... .
T Consensus 23 ~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (319)
T PRK00440 23 EEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGIDVIRNKIKEFARTAPV 98 (319)
T ss_pred HHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchHHHHHHHHHHHhcCCC
Confidence 4555666666653 3344578999999999999999877321 11121 123333 22222222211222222221 1
Q ss_pred C-CCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCcccccCCCCChhhHHHHhhhhCCC
Q 036086 201 S-SKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAEHLIYFSESNSWSNLNCELPP 278 (355)
Q Consensus 201 ~-~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~ 278 (355)
. ..+-++++|++..-....+..+...+.... ..+.+|+++.. ..+... .......+++.++++++....+.+.+-.
T Consensus 99 ~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-~~~~lIl~~~~~~~l~~~-l~sr~~~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 99 GGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-QNTRFILSCNYSSKIIDP-IQSRCAVFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred CCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-CCCeEEEEeCCccccchh-HHHHhheeeeCCCCHHHHHHHHHHHHHH
Confidence 2 346689999987555555666766665544 45667766643 222222 1111256889999999988777765432
Q ss_pred CCCCcchHHHHHHHHHHhcCCCchH
Q 036086 279 SSQEAHRVEDLETGSAMDEEGVTSL 303 (355)
Q Consensus 279 ~~~~~~~~~~~~~~i~~~c~GlPla 303 (355)
..- .--++....++..++|-+-.
T Consensus 177 ~~~--~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 177 EGI--EITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred cCC--CCCHHHHHHHHHHcCCCHHH
Confidence 211 11234556677888887733
No 42
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=4.1e-05 Score=75.31 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=102.6
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCC--C----Cc-------------eEEEEeCCCCCH
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSR--L----PF-------------KVWYSVGKNLDF 185 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~--F----~~-------------~~wv~vs~~~~~ 185 (355)
.-+..|.+++... .-...+-++|+.|+||||+|+.+.+.-..... + .| .+-+..+.+..+
T Consensus 25 ~iv~~L~~~i~~~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gV 103 (484)
T PRK14956 25 LAIGALQNALKSG-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGI 103 (484)
T ss_pred HHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccH
Confidence 3445566666532 22346789999999999999998763221110 0 00 011111112222
Q ss_pred HHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcE-EEEecCChhHhhhcccCCcccccCCCC
Q 036086 186 STAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFY-VLVTTHSTSVATMMMQTVPEAEHLIYF 263 (355)
Q Consensus 186 ~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~-IlvTTR~~~va~~~~~~~~~~~~l~~L 263 (355)
.. .+++.+.+... ..++.-++|+|++..-+...++.++..+..-. .... |+.||....+... +-+..+.|.+.++
T Consensus 104 d~-IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp-~~viFILaTte~~kI~~T-I~SRCq~~~f~~l 180 (484)
T PRK14956 104 EN-IRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP-AHIVFILATTEFHKIPET-ILSRCQDFIFKKV 180 (484)
T ss_pred HH-HHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC-CceEEEeecCChhhccHH-HHhhhheeeecCC
Confidence 22 22343333322 34566799999999777888999887775533 3344 4456665666544 3333367999999
Q ss_pred ChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc-hHHHHH
Q 036086 264 SESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT-SLTQFL 307 (355)
Q Consensus 264 ~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP-la~~~~ 307 (355)
+.++....+.+.+-... . .--.+....|++.++|-+ -|+..+
T Consensus 181 s~~~i~~~L~~i~~~Eg-i-~~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 181 PLSVLQDYSEKLCKIEN-V-QYDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred CHHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHcCChHHHHHHHH
Confidence 99988887776542211 1 112345567888998888 444444
No 43
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.20 E-value=4.8e-06 Score=79.72 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=53.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCC--CCHHHHHH--------------------------HHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKN--LDFSTAVQ--------------------------EIR 193 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~--------------------------~l~ 193 (355)
..++|+|++|+|||||++.+++..... ||+..+||.+++. .++.++++ +..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 468999999999999999999954333 7999999999966 67777776 111
Q ss_pred HHHhhcCCCCcEEEEEeCCC
Q 036086 194 NRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 194 ~~l~~~l~~kr~LlVlDdvw 213 (355)
+.+. -+|++.+|++|.+.
T Consensus 248 e~~~--~~GkdVVLlIDEit 265 (415)
T TIGR00767 248 KRLV--EHKKDVVILLDSIT 265 (415)
T ss_pred HHHH--HcCCCeEEEEEChh
Confidence 2222 35899999999986
No 44
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.18 E-value=1.3e-06 Score=70.92 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=61.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCcccc---CCCCceEEEEeCCCCCHHHHHH-----------------HHHHHHhhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVK---SRLPFKVWYSVGKNLDFSTAVQ-----------------EIRNRRNEI 199 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~i~~-----------------~l~~~l~~~ 199 (355)
+-+.+.|+|.+|+|||++++.+.++..-. ..-...+|+.++...+...+.. .+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34678999999999999999998742110 0023456888877767777666 333444444
Q ss_pred CCCC-cEEEEEeCCCCC-ChhhHHHHHHhhccCCCCCcEEEEecCC
Q 036086 200 PSSK-RLLFALDDVSHL-NDDNLANLRLLVSDMRLVGFYVLVTTHS 243 (355)
Q Consensus 200 l~~k-r~LlVlDdvw~~-~~~~~~~l~~~l~~~~~~gs~IlvTTR~ 243 (355)
+... ..+||+|++..- +...++.|..... . .+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~-~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--E-SNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--S-CBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--C-CCCeEEEEECh
Confidence 4433 369999999754 4455555544333 3 56777776543
No 45
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=6.6e-05 Score=74.45 Aligned_cols=156 Identities=17% Similarity=0.096 Sum_probs=96.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC------cc------------cc-CCCCceEEEEeCCCCCHHHHHHHHHHHHhh-cC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD------DD------------VK-SRLPFKVWYSVGKNLDFSTAVQEIRNRRNE-IP 200 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~------~~------------~~-~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~-~l 200 (355)
...+-++|+.|+||||+|+.+... +. +. ..+.-.+.+..+....+.++- ++.+.... -.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR-~Iie~~~~~P~ 113 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIK-VILENSCYLPI 113 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHH-HHHHHHHhccc
Confidence 347889999999999999887541 00 11 112223455555555554433 33333322 23
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEE-ecCChhHhhhcccCCcccccCCCCChhhHHHHhhhhCCCC
Q 036086 201 SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLV-TTHSTSVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPS 279 (355)
Q Consensus 201 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~ 279 (355)
.+++=++|+|++..-+...++.|...+..-. ..+++|+ ||....+... +.+....+.+.+++.++....+.+.+-..
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp-~~v~fIlatte~~Kl~~t-I~SRc~~~~f~~l~~~el~~~L~~ia~~E 191 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAFNALLKTLEEPA-PHVKFILATTEVKKIPVT-IISRCQRFDLQKIPTDKLVEHLVDIAKKE 191 (491)
T ss_pred cCCceEEEEeChHhCCHHHHHHHHHHHhCCC-CCeEEEEEeCChHHHHHH-HHHhheeeecccccHHHHHHHHHHHHHHc
Confidence 4566789999998767777888888877655 5666554 5555556554 43333789999999999888887765322
Q ss_pred CCCcchHHHHHHHHHHhcCCCc
Q 036086 280 SQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 280 ~~~~~~~~~~~~~i~~~c~GlP 301 (355)
.. .--++....|++.++|-+
T Consensus 192 gi--~i~~eAL~lIa~~s~Gsl 211 (491)
T PRK14964 192 NI--EHDEESLKLIAENSSGSM 211 (491)
T ss_pred CC--CCCHHHHHHHHHHcCCCH
Confidence 11 111244456777887766
No 46
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.17 E-value=9.7e-05 Score=70.68 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc--------------------cCCCCceEEEEeCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV--------------------KSRLPFKVWYSVGKNL 183 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~--------------------~~~F~~~~wv~vs~~~ 183 (355)
+..++.+.+++.. ..-...+-++|+.|+||||+|+.+...-.. ..+++. .++.-+...
T Consensus 20 ~~~~~~l~~~~~~-~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~~~~~~ 97 (355)
T TIGR02397 20 EHIVQTLKNAIKN-GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEIDAASNN 97 (355)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEeeccccC
Confidence 5556666666653 223457789999999999999877542110 113333 333333222
Q ss_pred CHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChh-HhhhcccCCcccccCC
Q 036086 184 DFSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLI 261 (355)
Q Consensus 184 ~~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~ 261 (355)
....+ +.+.+.+... ..+++-++|+|++..-+...++.+...+.... ..+.+|++|.+.. +... +......+++.
T Consensus 98 ~~~~~-~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~-~~~~lIl~~~~~~~l~~~-l~sr~~~~~~~ 174 (355)
T TIGR02397 98 GVDDI-REILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-EHVVFILATTEPHKIPAT-ILSRCQRFDFK 174 (355)
T ss_pred CHHHH-HHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc-cceeEEEEeCCHHHHHHH-HHhheeEEEcC
Confidence 22222 2333333222 33556688999987555566777877775544 5566666664433 3333 22222578889
Q ss_pred CCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchH
Q 036086 262 YFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSL 303 (355)
Q Consensus 262 ~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla 303 (355)
++++++....+.+.+-.... .--++....++..++|-|..
T Consensus 175 ~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g~~~~ 214 (355)
T TIGR02397 175 RIPLEDIVERLKKILDKEGI--KIEDEALELIARAADGSLRD 214 (355)
T ss_pred CCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCChHH
Confidence 99999888877765422111 11135666677888888743
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=6e-05 Score=76.73 Aligned_cols=172 Identities=13% Similarity=0.088 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc------------------------cCCCCceEEEEe
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV------------------------KSRLPFKVWYSV 179 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~------------------------~~~F~~~~wv~v 179 (355)
+.-++.|.+++.. +.-...+-++|..|+||||+|+.+.+.-.. .+.+.-..++..
T Consensus 22 e~vv~~L~~~l~~-~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~elda 100 (618)
T PRK14951 22 EHVVQALTNALTQ-QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDA 100 (618)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCc
Confidence 4445556666653 233467789999999999999988431111 011112233433
Q ss_pred CCCCCHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEE-EecCChhHhhhcccCCccc
Q 036086 180 GKNLDFSTAVQEIRNRRN-EIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVL-VTTHSTSVATMMMQTVPEA 257 (355)
Q Consensus 180 s~~~~~~~i~~~l~~~l~-~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Il-vTTR~~~va~~~~~~~~~~ 257 (355)
+.+..+..+- ++.+.+. .-..++.-++|||+|..-+...++.++..+..-. ...++| +||....+... +-+....
T Consensus 101 as~~~Vd~iR-eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP-~~~~fIL~Ttd~~kil~T-IlSRc~~ 177 (618)
T PRK14951 101 ASNRGVDEVQ-QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP-EYLKFVLATTDPQKVPVT-VLSRCLQ 177 (618)
T ss_pred ccccCHHHHH-HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC-CCeEEEEEECCchhhhHH-HHHhcee
Confidence 3333333332 3333222 1223555689999999878888888888776644 455555 45554555443 3332268
Q ss_pred ccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 258 EHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 258 ~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
+++++|+.++....+.+.+-...-. .-......|+..++|-+
T Consensus 178 ~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~Gsl 219 (618)
T PRK14951 178 FNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSM 219 (618)
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 9999999999888777654221111 11244556667777766
No 48
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=5.6e-05 Score=76.10 Aligned_cols=172 Identities=13% Similarity=0.089 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc-------------------CCCCceEEEEeCCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK-------------------SRLPFKVWYSVGKNLD 184 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~ 184 (355)
+.-++.|.+++.. +.-...+-++|+.|+||||+|+.+...-... ..|.-.+++..+.+..
T Consensus 22 ~~v~~~L~~~i~~-~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~ 100 (527)
T PRK14969 22 EHVVRALTNALEQ-QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQ 100 (527)
T ss_pred HHHHHHHHHHHHc-CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCC
Confidence 3444555565553 2223567799999999999999885422111 1122234444333333
Q ss_pred HHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEE-ecCChhHhhhcccCCcccccCCC
Q 036086 185 FSTAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLV-TTHSTSVATMMMQTVPEAEHLIY 262 (355)
Q Consensus 185 ~~~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~l~~ 262 (355)
+..+ +.+...... -..+++-++|+|++..-+....+.+...+..-. ..+.+|+ ||..+.+... +.+....+++.+
T Consensus 101 vd~i-r~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp-~~~~fIL~t~d~~kil~t-I~SRc~~~~f~~ 177 (527)
T PRK14969 101 VDAM-RELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP-EHVKFILATTDPQKIPVT-VLSRCLQFNLKQ 177 (527)
T ss_pred HHHH-HHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC-CCEEEEEEeCChhhCchh-HHHHHHHHhcCC
Confidence 3332 233333322 234677799999998766777888887776644 4555555 5444444322 222226799999
Q ss_pred CChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 263 FSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 263 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
++.++....+.+.+-.. ... .-+.....|+..++|-+
T Consensus 178 l~~~~i~~~L~~il~~e-gi~-~~~~al~~la~~s~Gsl 214 (527)
T PRK14969 178 MPPPLIVSHLQHILEQE-NIP-FDATALQLLARAAAGSM 214 (527)
T ss_pred CCHHHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHcCCCH
Confidence 99998887766543211 111 11234456677888866
No 49
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=5.5e-05 Score=77.26 Aligned_cols=172 Identities=15% Similarity=0.108 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc-------------------CCCCceEEEEeCCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK-------------------SRLPFKVWYSVGKNLD 184 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~ 184 (355)
+.-++.|.+.+.. +.-...+-++|..|+||||+|+.+.+.-... +.|.-.+.+..+....
T Consensus 22 e~vv~~L~~~l~~-~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~ 100 (647)
T PRK07994 22 EHVLTALANALDL-GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTK 100 (647)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCC
Confidence 3344455555543 2223457899999999999999886532211 1121123333332233
Q ss_pred HHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcE-EEEecCChhHhhhcccCCcccccCCC
Q 036086 185 FSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFY-VLVTTHSTSVATMMMQTVPEAEHLIY 262 (355)
Q Consensus 185 ~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~-IlvTTR~~~va~~~~~~~~~~~~l~~ 262 (355)
+..+ +++.+.+... ..+++-++|+|++..-+...++.|+..+-.-. ...+ |++||....+... +-+....|++.+
T Consensus 101 Vddi-R~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp-~~v~FIL~Tt~~~kLl~T-I~SRC~~~~f~~ 177 (647)
T PRK07994 101 VEDT-RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVT-ILSRCLQFHLKA 177 (647)
T ss_pred HHHH-HHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC-CCeEEEEecCCccccchH-HHhhheEeeCCC
Confidence 3332 3444443322 35677799999999778888888888776544 3444 5556655555433 322236899999
Q ss_pred CChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 263 FSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 263 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
|+.++....+.+..-.. .. ..-......|+..++|.|
T Consensus 178 Ls~~ei~~~L~~il~~e-~i-~~e~~aL~~Ia~~s~Gs~ 214 (647)
T PRK07994 178 LDVEQIRQQLEHILQAE-QI-PFEPRALQLLARAADGSM 214 (647)
T ss_pred CCHHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHcCCCH
Confidence 99999988887643111 11 111244456778888877
No 50
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=0.00019 Score=68.52 Aligned_cols=173 Identities=8% Similarity=0.073 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc-----c-------CCCCce-------------EEEE
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV-----K-------SRLPFK-------------VWYS 178 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~-----~-------~~F~~~-------------~wv~ 178 (355)
+...+.+...+.. +.-...+-|.|+.|+||||+|..+...-.. . .+..|. .++.
T Consensus 29 ~~a~~~L~~a~~~-grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~ 107 (351)
T PRK09112 29 EEAEAFLAQAYRE-GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHIT 107 (351)
T ss_pred HHHHHHHHHHHHc-CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEee
Confidence 4444555555543 333557889999999999999876542111 0 000111 1221
Q ss_pred eC---------CCCCHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcE-EEEecCChhHh
Q 036086 179 VG---------KNLDFSTAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFY-VLVTTHSTSVA 247 (355)
Q Consensus 179 vs---------~~~~~~~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~-IlvTTR~~~va 247 (355)
.+ +...+.. .+.+.+.+.. ...+++-++|+|++..-+....+.+...+..-. .+.. |++|++...+.
T Consensus 108 ~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp-~~~~fiLit~~~~~ll 185 (351)
T PRK09112 108 RPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP-ARALFILISHSSGRLL 185 (351)
T ss_pred cccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC-CCceEEEEECChhhcc
Confidence 11 0111122 1233333332 224567799999998777777888877776543 3444 55555544444
Q ss_pred hhcccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 248 TMMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 248 ~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
.. +.+....+++.+++.++....+.+..... . ........++..++|.|..+
T Consensus 186 pt-IrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~A 237 (351)
T PRK09112 186 PT-IRSRCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKA 237 (351)
T ss_pred HH-HHhhccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHH
Confidence 43 33333689999999999999998743211 1 11344567889999999654
No 51
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.13 E-value=9.1e-05 Score=72.08 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=76.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhhHH
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-DFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLNDDNLA 221 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~~ 221 (355)
++.|.|+.++|||||++.+... ..+. .+++..-+.. +-..+ .+....+.+.-..++.+++||.|. ....|.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l-~d~~~~~~~~~~~~~~yifLDEIq--~v~~W~ 110 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIEL-LDLLRAYIELKEREKSYIFLDEIQ--NVPDWE 110 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhH-HHHHHHHHHhhccCCceEEEeccc--CchhHH
Confidence 9999999999999999766552 2121 4455433221 22222 122222222222288999999999 778899
Q ss_pred HHHHhhccCCCCCcEEEEecCChhH-----hhhcccCCcccccCCCCChhhHHHH
Q 036086 222 NLRLLVSDMRLVGFYVLVTTHSTSV-----ATMMMQTVPEAEHLIYFSESNSWSN 271 (355)
Q Consensus 222 ~l~~~l~~~~~~gs~IlvTTR~~~v-----a~~~~~~~~~~~~l~~L~~~~s~~L 271 (355)
.....+.+.. +. +|++|+.+... ++...|.. ..+.+-|||-.|...+
T Consensus 111 ~~lk~l~d~~-~~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 111 RALKYLYDRG-NL-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKL 162 (398)
T ss_pred HHHHHHHccc-cc-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhh
Confidence 8888888766 55 88998877654 33312333 6789999999888764
No 52
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=7.3e-05 Score=74.89 Aligned_cols=172 Identities=13% Similarity=0.085 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc-------------------CCCCceEEEEeCCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK-------------------SRLPFKVWYSVGKNLD 184 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~ 184 (355)
+.-++.|.+++... .-...+-++|+.|+||||+|+.+.+.-... +.|.-...+..+....
T Consensus 22 ~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~ 100 (509)
T PRK14958 22 APVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTK 100 (509)
T ss_pred HHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCC
Confidence 44556677776542 234467899999999999998876522111 1122234444444444
Q ss_pred HHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEE-ecCChhHhhhcccCCcccccCCC
Q 036086 185 FSTAVQEIRNRRN-EIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLV-TTHSTSVATMMMQTVPEAEHLIY 262 (355)
Q Consensus 185 ~~~i~~~l~~~l~-~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~l~~ 262 (355)
+.++ +++.+.+. .-..++.-++|+|++..-+....+.+...+..-. ..+++|+ ||....+... +-+....+++.+
T Consensus 101 v~~i-R~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp-~~~~fIlattd~~kl~~t-I~SRc~~~~f~~ 177 (509)
T PRK14958 101 VEDT-RELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP-SHVKFILATTDHHKLPVT-VLSRCLQFHLAQ 177 (509)
T ss_pred HHHH-HHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC-CCeEEEEEECChHhchHH-HHHHhhhhhcCC
Confidence 4443 23333332 2234566789999998777778888887776654 4566555 5544444433 322226789999
Q ss_pred CChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 263 FSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 263 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
++.++-...+.+.+-.. ... .-......|+..++|-|
T Consensus 178 l~~~~i~~~l~~il~~e-gi~-~~~~al~~ia~~s~Gsl 214 (509)
T PRK14958 178 LPPLQIAAHCQHLLKEE-NVE-FENAALDLLARAANGSV 214 (509)
T ss_pred CCHHHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHcCCcH
Confidence 99888766544432111 111 11233455667777877
No 53
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=5.7e-05 Score=73.59 Aligned_cols=171 Identities=11% Similarity=0.070 Sum_probs=96.2
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc----------------------------CCCCceEE
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK----------------------------SRLPFKVW 176 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~----------------------------~~F~~~~w 176 (355)
.-++.|.+++.. +.-...+-++|+.|+||||+|..+.+.-... .|++.. .
T Consensus 23 ~~~~~L~~~~~~-~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~-~ 100 (397)
T PRK14955 23 HITRTIQNSLRM-GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNIS-E 100 (397)
T ss_pred HHHHHHHHHHHh-CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeE-e
Confidence 334445555542 2234457889999999999998875422111 122211 1
Q ss_pred EEeCCCCCHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEE-ecCChhHhhhcccCC
Q 036086 177 YSVGKNLDFSTAVQEIRNRRN-EIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLV-TTHSTSVATMMMQTV 254 (355)
Q Consensus 177 v~vs~~~~~~~i~~~l~~~l~-~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Ilv-TTR~~~va~~~~~~~ 254 (355)
+.-+....+.++. ++.+.+. .-..+++-++|+|++..-+...++.+...+..-. ..+.+|+ |++...+... +...
T Consensus 101 ~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~-~~t~~Il~t~~~~kl~~t-l~sR 177 (397)
T PRK14955 101 FDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP-PHAIFIFATTELHKIPAT-IASR 177 (397)
T ss_pred ecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC-CCeEEEEEeCChHHhHHH-HHHH
Confidence 1111222233332 3333332 1234566688999998666678888888877655 5566555 4454444433 3222
Q ss_pred cccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCch
Q 036086 255 PEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTS 302 (355)
Q Consensus 255 ~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPl 302 (355)
...+++.++++++....+...+-... -.--.+....++..++|-+-
T Consensus 178 ~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 178 CQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMR 223 (397)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 25789999999888777766431111 11123555667788888663
No 54
>PRK06620 hypothetical protein; Validated
Probab=98.12 E-value=2.8e-05 Score=69.15 Aligned_cols=132 Identities=13% Similarity=0.040 Sum_probs=75.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhhHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLNDDNLA 221 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~~ 221 (355)
+.+-|+|+.|+|||+|++.+.+... . .++. ..+... +.. +..-++++||+..-+...+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~~-----------~~~-~~~d~lliDdi~~~~~~~lf 103 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFNE-----------EIL-EKYNAFIIEDIENWQEPALL 103 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhch-----------hHH-hcCCEEEEeccccchHHHHH
Confidence 5689999999999999999877432 1 1211 111100 111 13357889999622221111
Q ss_pred HHHHhhccCCCCCcEEEEecCChhH-------hhhcccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHH
Q 036086 222 NLRLLVSDMRLVGFYVLVTTHSTSV-------ATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSA 294 (355)
Q Consensus 222 ~l~~~l~~~~~~gs~IlvTTR~~~v-------a~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~ 294 (355)
.+...+. . +|..||+|++.... ... +... -+++++++++++-..++++.+-.. . -.-.+++..-|+
T Consensus 104 ~l~N~~~--e-~g~~ilits~~~p~~l~l~~L~SR-l~~g-l~~~l~~pd~~~~~~~l~k~~~~~-~-l~l~~ev~~~L~ 176 (214)
T PRK06620 104 HIFNIIN--E-KQKYLLLTSSDKSRNFTLPDLSSR-IKSV-LSILLNSPDDELIKILIFKHFSIS-S-VTISRQIIDFLL 176 (214)
T ss_pred HHHHHHH--h-cCCEEEEEcCCCccccchHHHHHH-HhCC-ceEeeCCCCHHHHHHHHHHHHHHc-C-CCCCHHHHHHHH
Confidence 1211222 2 57789998874322 222 3333 579999999999888887764321 1 112246666677
Q ss_pred HhcCCCc
Q 036086 295 MDEEGVT 301 (355)
Q Consensus 295 ~~c~GlP 301 (355)
..+.|--
T Consensus 177 ~~~~~d~ 183 (214)
T PRK06620 177 VNLPREY 183 (214)
T ss_pred HHccCCH
Confidence 7776654
No 55
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=0.00015 Score=70.28 Aligned_cols=153 Identities=11% Similarity=0.020 Sum_probs=91.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccc-------------------cCCCCceEEEEeC-CCCCHHHHHHHHHHHHhh-c
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDV-------------------KSRLPFKVWYSVG-KNLDFSTAVQEIRNRRNE-I 199 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~wv~vs-~~~~~~~i~~~l~~~l~~-~ 199 (355)
..-+-++|+.|+||||+|..+...-.. ..|.| ..++... ....+.. .+.+.+.+.. -
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD-~~~i~~~~~~i~i~~-iR~l~~~~~~~p 113 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPD-VRVVAPEGLSIGVDE-VRELVTIAARRP 113 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEeccccccCCHHH-HHHHHHHHHhCc
Confidence 456889999999999999887541110 01112 1233221 2223333 2234443332 2
Q ss_pred CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCcccccCCCCChhhHHHHhhhhCCC
Q 036086 200 PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAEHLIYFSESNSWSNLNCELPP 278 (355)
Q Consensus 200 l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~ 278 (355)
..+++-++++|++..-+....+.+...+..-. .+..+|++|.+ ..+... +-+....+.+.+++.++....+.... +
T Consensus 114 ~~~~~kViiIDead~m~~~aanaLLk~LEep~-~~~~fIL~a~~~~~llpT-IrSRc~~i~f~~~~~~~i~~~L~~~~-~ 190 (394)
T PRK07940 114 STGRWRIVVIEDADRLTERAANALLKAVEEPP-PRTVWLLCAPSPEDVLPT-IRSRCRHVALRTPSVEAVAEVLVRRD-G 190 (394)
T ss_pred ccCCcEEEEEechhhcCHHHHHHHHHHhhcCC-CCCeEEEEECChHHChHH-HHhhCeEEECCCCCHHHHHHHHHHhc-C
Confidence 34566688889998766777777777775544 45655555544 444434 33333689999999999988886432 1
Q ss_pred CCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 279 SSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 279 ~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
. ..+.+..++..++|.|..+
T Consensus 191 ---~---~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 191 ---V---DPETARRAARASQGHIGRA 210 (394)
T ss_pred ---C---CHHHHHHHHHHcCCCHHHH
Confidence 1 1244667789999988544
No 56
>PRK05642 DNA replication initiation factor; Validated
Probab=98.10 E-value=2.8e-05 Score=70.13 Aligned_cols=149 Identities=12% Similarity=0.109 Sum_probs=86.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-Chhh
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHL-NDDN 219 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~-~~~~ 219 (355)
...+.|+|..|+|||.|++.+.+. ....-...+|++..+ +.... ..+.+.+.+- =++++||+... ....
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~~-~~~~~~~~~~-d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDRG-PELLDNLEQY-ELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhhh-HHHHHhhhhC-CEEEEechhhhcCChH
Confidence 356889999999999999999873 222222345665432 21111 1122222222 26889999632 2235
Q ss_pred HHH-HHHhhccCCCCCcEEEEecCChhH---------hhhcccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHH
Q 036086 220 LAN-LRLLVSDMRLVGFYVLVTTHSTSV---------ATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDL 289 (355)
Q Consensus 220 ~~~-l~~~l~~~~~~gs~IlvTTR~~~v---------a~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~ 289 (355)
|.. +...+.....+|..||+||+...- ... ++.. .++++++++.++-..+++.++....- .-.+++
T Consensus 115 ~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SR-l~~g-l~~~l~~~~~e~~~~il~~ka~~~~~--~l~~ev 190 (234)
T PRK05642 115 WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSR-LTLA-LVFQMRGLSDEDKLRALQLRASRRGL--HLTDEV 190 (234)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHH-HhcC-eeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHH
Confidence 543 444443211146678888875321 122 2233 57899999999999999866533211 112466
Q ss_pred HHHHHHhcCCCchH
Q 036086 290 ETGSAMDEEGVTSL 303 (355)
Q Consensus 290 ~~~i~~~c~GlPla 303 (355)
..-+++.+.|-.-.
T Consensus 191 ~~~L~~~~~~d~r~ 204 (234)
T PRK05642 191 GHFILTRGTRSMSA 204 (234)
T ss_pred HHHHHHhcCCCHHH
Confidence 67777888776533
No 57
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.00012 Score=74.98 Aligned_cols=172 Identities=14% Similarity=0.103 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc-------------------CCCCceEEEEeCCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK-------------------SRLPFKVWYSVGKNLD 184 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~ 184 (355)
+.-++.|.+++.. +.-...+-++|+.|+||||+|+.+.+.-... +.|.-.+.+..+....
T Consensus 22 e~vv~~L~~ai~~-~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~g 100 (709)
T PRK08691 22 EHVVKALQNALDE-GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTG 100 (709)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCC
Confidence 4445566666663 2224567899999999999999876521111 1111123344343334
Q ss_pred HHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecC-ChhHhhhcccCCcccccCCC
Q 036086 185 FSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTH-STSVATMMMQTVPEAEHLIY 262 (355)
Q Consensus 185 ~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR-~~~va~~~~~~~~~~~~l~~ 262 (355)
+..+ +.+....... ..+++-++|+|++...+....+.|+..+..-. ..+++|++|. ...+... +-+....+++.+
T Consensus 101 Vd~I-Relle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp-~~v~fILaTtd~~kL~~T-IrSRC~~f~f~~ 177 (709)
T PRK08691 101 IDNI-REVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP-EHVKFILATTDPHKVPVT-VLSRCLQFVLRN 177 (709)
T ss_pred HHHH-HHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC-CCcEEEEEeCCccccchH-HHHHHhhhhcCC
Confidence 3322 2333222111 23566789999998666666777777775543 3455665554 3333332 222225688999
Q ss_pred CChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 263 FSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 263 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
++.++....+.+.+-...- .--......|++.++|-+
T Consensus 178 Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~Gsl 214 (709)
T PRK08691 178 MTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSM 214 (709)
T ss_pred CCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCH
Confidence 9999988877765422111 112345567778888887
No 58
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00016 Score=73.16 Aligned_cols=178 Identities=13% Similarity=0.062 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc--------------------CCCCceEEEEeCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK--------------------SRLPFKVWYSVGKNL 183 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~ 183 (355)
+..++.+.+.+.. +.-.+.+-++|+.|+||||+|+.+.+.-... .|.+ ..++..+...
T Consensus 22 e~iv~~L~~aI~~-~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D-iieIdaas~i 99 (605)
T PRK05896 22 ELIKKILVNAILN-NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD-IVELDAASNN 99 (605)
T ss_pred HHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc-eEEecccccc
Confidence 3444555555543 2234578899999999999999875421110 1111 2344333333
Q ss_pred CHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEE-EecCChhHhhhcccCCcccccCC
Q 036086 184 DFSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVL-VTTHSTSVATMMMQTVPEAEHLI 261 (355)
Q Consensus 184 ~~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Il-vTTR~~~va~~~~~~~~~~~~l~ 261 (355)
.+..+ +.+...+... ..+++=++|+|++..-+...++.|...+..-. ..+.+| +||....+... +.+....+++.
T Consensus 100 gVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp-~~tvfIL~Tt~~~KLl~T-I~SRcq~ieF~ 176 (605)
T PRK05896 100 GVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP-KHVVFIFATTEFQKIPLT-IISRCQRYNFK 176 (605)
T ss_pred CHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC-CcEEEEEECCChHhhhHH-HHhhhhhcccC
Confidence 33332 2333322221 22344469999998666777888887776544 445554 45554444433 22223689999
Q ss_pred CCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc-hHHHHHH
Q 036086 262 YFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT-SLTQFLL 308 (355)
Q Consensus 262 ~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP-la~~~~~ 308 (355)
++++++....+...+-.... .--......++..++|-| .|+..+.
T Consensus 177 ~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 177 KLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred CCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 99999988777765422111 111344567788888865 4554444
No 59
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.04 E-value=5.4e-05 Score=73.70 Aligned_cols=101 Identities=15% Similarity=0.212 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-------------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ------------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~------------- 190 (355)
+...+.+...|.. .+.|.++|++|+|||++|+.+++......+|+...||++++.++..+++.
T Consensus 181 e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~ 256 (459)
T PRK11331 181 ETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKD 256 (459)
T ss_pred HHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecC
Confidence 6677778777764 24577899999999999999988554455778888999999999888774
Q ss_pred -HHHHHHhhcC--CCCcEEEEEeCCCCCChhh-HHHHHHhhc
Q 036086 191 -EIRNRRNEIP--SSKRLLFALDDVSHLNDDN-LANLRLLVS 228 (355)
Q Consensus 191 -~l~~~l~~~l--~~kr~LlVlDdvw~~~~~~-~~~l~~~l~ 228 (355)
.+.+.+.... .++++++|+|++-..+... +..+...+.
T Consensus 257 G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 257 GIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred chHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1122222221 2468999999997555433 455544443
No 60
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.00 E-value=0.00013 Score=74.90 Aligned_cols=204 Identities=18% Similarity=0.133 Sum_probs=121.9
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHH------------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-DFSTAVQ------------ 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~------------ 190 (355)
...+.+|.+.|.. ..+.+++.|..++|.|||||+-+... ... .=..+.|.+++.+- +...+..
T Consensus 21 ~v~R~rL~~~L~~-~~~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 21 YVVRPRLLDRLRR-ANDYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred ccccHHHHHHHhc-CCCceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 4567888888886 45789999999999999999999864 111 12357899988654 4444444
Q ss_pred ------------------HHHHHHhhcCC--CCcEEEEEeCCCCCChhhHH-HHHHhhccCCCCCcEEEEecCChh---H
Q 036086 191 ------------------EIRNRRNEIPS--SKRLLFALDDVSHLNDDNLA-NLRLLVSDMRLVGFYVLVTTHSTS---V 246 (355)
Q Consensus 191 ------------------~l~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~-~l~~~l~~~~~~gs~IlvTTR~~~---v 246 (355)
.+...+..-+. .++..+||||..-....... .+.-.+.... .+-..|||||+.- +
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P-~~l~lvv~SR~rP~l~l 175 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP-ENLTLVVTSRSRPQLGL 175 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC-CCeEEEEEeccCCCCcc
Confidence 12222222222 35789999997643333332 3333333344 6678999999864 2
Q ss_pred hhhcccCCcccccCC----CCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHHHHHHhhcccccCCCcCcc
Q 036086 247 ATMMMQTVPEAEHLI----YFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLTQFLLDIDPVATGESLETV 322 (355)
Q Consensus 247 a~~~~~~~~~~~~l~----~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~~~~~~~~~~~~~~~~~~~ 322 (355)
|+. .-.+...+++ .++.+|+-.+|..... ..-+. .-.+.+.....|=+.|++.++=+.+.+...+ ..+
T Consensus 176 a~l--Rlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-l~Ld~----~~~~~L~~~teGW~~al~L~aLa~~~~~~~~-q~~ 247 (894)
T COG2909 176 ARL--RLRDELLEIGSEELRFDTEEAAAFLNDRGS-LPLDA----ADLKALYDRTEGWAAALQLIALALRNNTSAE-QSL 247 (894)
T ss_pred cce--eehhhHHhcChHhhcCChHHHHHHHHHcCC-CCCCh----HHHHHHHhhcccHHHHHHHHHHHccCCCcHH-HHh
Confidence 222 1111233332 4788999999977631 11122 2234556777888888888887777222211 111
Q ss_pred ch------------HHhhhcCCCccccccc
Q 036086 323 PT------------SDRTERRLPIHDIDCE 340 (355)
Q Consensus 323 ~~------------l~~sY~~Lp~~lk~CF 340 (355)
+. ...-.+.||+.++...
T Consensus 248 ~~LsG~~~~l~dYL~eeVld~Lp~~l~~FL 277 (894)
T COG2909 248 RGLSGAASHLSDYLVEEVLDRLPPELRDFL 277 (894)
T ss_pred hhccchHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 11 1125677888876543
No 61
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00032 Score=71.29 Aligned_cols=175 Identities=12% Similarity=0.064 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccC--------------------CCCceEEEEeCCCCCHH
Q 036086 127 VDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKS--------------------RLPFKVWYSVGKNLDFS 186 (355)
Q Consensus 127 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs~~~~~~ 186 (355)
++.|.+.+.. +.-...+-+.|+.|+||||+|+.+.+.-.... |.+ .+++..+....+.
T Consensus 25 ~~~L~~ai~~-~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD-v~eId~a~~~~Id 102 (624)
T PRK14959 25 KAILSRAAQE-NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD-VVEIDGASNRGID 102 (624)
T ss_pred HHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc-eEEEecccccCHH
Confidence 3334444432 22246788899999999999998876332211 111 2333322222232
Q ss_pred HHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEec-CChhHhhhcccCCcccccCCCCC
Q 036086 187 TAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTT-HSTSVATMMMQTVPEAEHLIYFS 264 (355)
Q Consensus 187 ~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTT-R~~~va~~~~~~~~~~~~l~~L~ 264 (355)
.+ +.+.+.+.. -..+++-++|+|++..-+...++.|...+..-. ....+|++| ....+... +-+....+++.+++
T Consensus 103 ~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-~~~ifILaTt~~~kll~T-I~SRcq~i~F~pLs 179 (624)
T PRK14959 103 DA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP-ARVTFVLATTEPHKFPVT-IVSRCQHFTFTRLS 179 (624)
T ss_pred HH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-CCEEEEEecCChhhhhHH-HHhhhhccccCCCC
Confidence 22 233333322 134567799999998766777888887775533 345555544 44444433 32222678999999
Q ss_pred hhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc-hHHHHHH
Q 036086 265 ESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT-SLTQFLL 308 (355)
Q Consensus 265 ~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP-la~~~~~ 308 (355)
.++....+...+..... .--.+....|+..++|-+ .|+..+.
T Consensus 180 ~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLe 222 (624)
T PRK14959 180 EAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLG 222 (624)
T ss_pred HHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99998888765432211 112345566777887754 5555554
No 62
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00023 Score=68.57 Aligned_cols=172 Identities=10% Similarity=0.094 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc------cCCCCceE-EEEeCCCCCHHHHHHHHHHHH
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV------KSRLPFKV-WYSVGKNLDFSTAVQEIRNRR 196 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~------~~~F~~~~-wv~vs~~~~~~~i~~~l~~~l 196 (355)
+...+.+.+.+.. +.-.+.+-++|+.|+||||+|..+.+.-.. ...|...+ -+.......+..+. .+.+.+
T Consensus 23 ~~~~~~l~~~i~~-~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~-~l~~~~ 100 (367)
T PRK14970 23 SHITNTLLNAIEN-NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIR-NLIDQV 100 (367)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHH-HHHHHH
Confidence 4455566666653 223457889999999999999988663211 11222222 11111222233332 222322
Q ss_pred hh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEec-CChhHhhhcccCCcccccCCCCChhhHHHHhhh
Q 036086 197 NE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTT-HSTSVATMMMQTVPEAEHLIYFSESNSWSNLNC 274 (355)
Q Consensus 197 ~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTT-R~~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~ 274 (355)
.. -..+++-++++|++..-....++.+...+.... ..+.+|++| ....+... .......+++.++++++....+..
T Consensus 101 ~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~-~~~~~Il~~~~~~kl~~~-l~sr~~~v~~~~~~~~~l~~~l~~ 178 (367)
T PRK14970 101 RIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPP-AHAIFILATTEKHKIIPT-ILSRCQIFDFKRITIKDIKEHLAG 178 (367)
T ss_pred hhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCC-CceEEEEEeCCcccCCHH-HHhcceeEecCCccHHHHHHHHHH
Confidence 21 223455689999987545566777776665433 345555544 43333333 222225789999999998888776
Q ss_pred hCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 275 ELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 275 ~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
.+-...-. --.+....++..++|-+
T Consensus 179 ~~~~~g~~--i~~~al~~l~~~~~gdl 203 (367)
T PRK14970 179 IAVKEGIK--FEDDALHIIAQKADGAL 203 (367)
T ss_pred HHHHcCCC--CCHHHHHHHHHhCCCCH
Confidence 54322110 11245555666777654
No 63
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.99 E-value=5.9e-05 Score=74.53 Aligned_cols=155 Identities=10% Similarity=0.061 Sum_probs=86.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCC--ceEEEEeCCCCCHHHHHHHH------HHHHhhcCCCCcEEEEEeCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLP--FKVWYSVGKNLDFSTAVQEI------RNRRNEIPSSKRLLFALDDV 212 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~l------~~~l~~~l~~kr~LlVlDdv 212 (355)
..-+.|+|..|+|||+|++.+.+ .+..... ..++++... | ...+...+ ...+.+.+. +.-+||+||+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~~~~-f-~~~~~~~l~~~~~~~~~~~~~~~-~~dvLiIDDi 215 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMSGDE-F-ARKAVDILQKTHKEIEQFKNEIC-QNDVLIIDDV 215 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEHHH-H-HHHHHHHHHHhhhHHHHHHHHhc-cCCEEEEecc
Confidence 45688999999999999999988 3332221 223443221 1 01111111 112222222 3458999999
Q ss_pred CCCCh-hhH-HHHHHhhccC-CCCCcEEEEecCCh---------hHhhhcccCCcccccCCCCChhhHHHHhhhhCCCCC
Q 036086 213 SHLND-DNL-ANLRLLVSDM-RLVGFYVLVTTHST---------SVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSS 280 (355)
Q Consensus 213 w~~~~-~~~-~~l~~~l~~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~ 280 (355)
..... ..+ +.+...+... . .|..||+|+... .+... +... -++.+++++.++-..++.+++-...
T Consensus 216 q~l~~k~~~~e~lf~l~N~~~~-~~k~iIltsd~~P~~l~~l~~rL~SR-~~~G-l~~~L~~pd~e~r~~iL~~~~~~~g 292 (450)
T PRK14087 216 QFLSYKEKTNEIFFTIFNNFIE-NDKQLFFSSDKSPELLNGFDNRLITR-FNMG-LSIAIQKLDNKTATAIIKKEIKNQN 292 (450)
T ss_pred ccccCCHHHHHHHHHHHHHHHH-cCCcEEEECCCCHHHHhhccHHHHHH-HhCC-ceeccCCcCHHHHHHHHHHHHHhcC
Confidence 74321 222 3444433321 2 455788886542 22222 3333 5788999999999999988763211
Q ss_pred CCcchHHHHHHHHHHhcCCCchH
Q 036086 281 QEAHRVEDLETGSAMDEEGVTSL 303 (355)
Q Consensus 281 ~~~~~~~~~~~~i~~~c~GlPla 303 (355)
-...-.+++..-|+..++|-|-.
T Consensus 293 l~~~l~~evl~~Ia~~~~gd~R~ 315 (450)
T PRK14087 293 IKQEVTEEAINFISNYYSDDVRK 315 (450)
T ss_pred CCCCCCHHHHHHHHHccCCCHHH
Confidence 10123356667777888887733
No 64
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00023 Score=72.59 Aligned_cols=173 Identities=14% Similarity=0.093 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCC------------------------CCceEEEEe
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSR------------------------LPFKVWYSV 179 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~------------------------F~~~~wv~v 179 (355)
+..++.|.+.+.. +.-..-+-++|+.|+||||+|+.+.+.-..... ..-.+++..
T Consensus 30 ~~~v~~L~~~~~~-gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a 108 (598)
T PRK09111 30 EAMVRTLTNAFET-GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDA 108 (598)
T ss_pred HHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecc
Confidence 4555566666653 223446889999999999999988653211110 011223333
Q ss_pred CCCCCHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEE-ecCChhHhhhcccCCccc
Q 036086 180 GKNLDFSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLV-TTHSTSVATMMMQTVPEA 257 (355)
Q Consensus 180 s~~~~~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~ 257 (355)
+....+.++ +++.+.+... ..+++-++|+|++...+....+.|...+..-. .++.+|+ ||....+... +.+....
T Consensus 109 ~s~~gvd~I-ReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp-~~~~fIl~tte~~kll~t-I~SRcq~ 185 (598)
T PRK09111 109 ASHTGVDDI-REIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPP-PHVKFIFATTEIRKVPVT-VLSRCQR 185 (598)
T ss_pred cccCCHHHH-HHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCC-CCeEEEEEeCChhhhhHH-HHhheeE
Confidence 333333332 2333333221 23456679999998666677888887776544 4566554 5555555444 3333368
Q ss_pred ccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCch
Q 036086 258 EHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTS 302 (355)
Q Consensus 258 ~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPl 302 (355)
+.+.+++.++....+.+.+-.... .--.+....|+..++|-+.
T Consensus 186 ~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr 228 (598)
T PRK09111 186 FDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVR 228 (598)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 899999999988887765421111 1112455666778888773
No 65
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.98 E-value=8.4e-05 Score=71.58 Aligned_cols=166 Identities=13% Similarity=0.120 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHhcC-----------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH--
Q 036086 124 ESSVDSVKNALLRD-----------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-- 190 (355)
+..+++|.+.+... -...+-+.++|++|+|||+||+.+++ ....+| +.++...-......
T Consensus 128 ~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~~~l~~~~~g~~ 200 (364)
T TIGR01242 128 EEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVGSELVRKYIGEG 200 (364)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----EecchHHHHHHhhhHH
Confidence 56666666655321 12245588999999999999999998 333333 22221100000000
Q ss_pred --HHHHHHhhcCCCCcEEEEEeCCCCC-----------Chh---hHHHHHHhhcc--CCCCCcEEEEecCChhHh-hhcc
Q 036086 191 --EIRNRRNEIPSSKRLLFALDDVSHL-----------NDD---NLANLRLLVSD--MRLVGFYVLVTTHSTSVA-TMMM 251 (355)
Q Consensus 191 --~l~~~l~~~l~~kr~LlVlDdvw~~-----------~~~---~~~~l~~~l~~--~~~~gs~IlvTTR~~~va-~~~~ 251 (355)
.+...+...-...+.+|+||+++.- +.. .+..+...+.. .. .+.+||.||...+.. ..+.
T Consensus 201 ~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~v~vI~ttn~~~~ld~al~ 279 (364)
T TIGR01242 201 ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-GNVKVIAATNRPDILDPALL 279 (364)
T ss_pred HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEecCChhhCChhhc
Confidence 1111222222345789999998631 111 12223222221 12 356788888754321 1101
Q ss_pred --cCCcccccCCCCChhhHHHHhhhhCCCCCC-CcchHHHHHHHHHHhcCCCc
Q 036086 252 --QTVPEAEHLIYFSESNSWSNLNCELPPSSQ-EAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 252 --~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~-~~~~~~~~~~~i~~~c~GlP 301 (355)
+..+..+.+...+.++..++|...+.+..- ....+ ..++..+.|..
T Consensus 280 r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 280 RPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 111257889999999999999887644321 12233 34557777765
No 66
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.97 E-value=8.3e-05 Score=66.65 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=78.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhh
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLNDDN 219 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~~~~ 219 (355)
....+.|+|..|+|||+||+.+++... .... ...+++..... ..+ ... ...-+|++||+..-+...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~----------~~~-~~~-~~~~~liiDdi~~l~~~~ 106 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL----------LAF-DFD-PEAELYAVDDVERLDDAQ 106 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH----------HHH-hhc-ccCCEEEEeChhhcCchH
Confidence 345678999999999999999988421 1121 22344433211 011 112 234478999997433333
Q ss_pred HHHHHHhhccCCCCCc-EEEEecCChhHhh--------hcccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHH
Q 036086 220 LANLRLLVSDMRLVGF-YVLVTTHSTSVAT--------MMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLE 290 (355)
Q Consensus 220 ~~~l~~~l~~~~~~gs-~IlvTTR~~~va~--------~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~ 290 (355)
-..+...+......|. .||+|++...... . +... ..+++.+|++++-..++.+.+ .... -.--+++.
T Consensus 107 ~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr-~~~~-~~i~l~pl~~~~~~~~l~~~~-~~~~-v~l~~~al 182 (227)
T PRK08903 107 QIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR-LGWG-LVYELKPLSDADKIAALKAAA-AERG-LQLADEVP 182 (227)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH-HhcC-eEEEecCCCHHHHHHHHHHHH-HHcC-CCCCHHHH
Confidence 3344444432110344 3666666433222 2 2222 578999999887666665432 1111 11123455
Q ss_pred HHHHHhcCCCchHH
Q 036086 291 TGSAMDEEGVTSLT 304 (355)
Q Consensus 291 ~~i~~~c~GlPla~ 304 (355)
..++..+.|-+..+
T Consensus 183 ~~L~~~~~gn~~~l 196 (227)
T PRK08903 183 DYLLTHFRRDMPSL 196 (227)
T ss_pred HHHHHhccCCHHHH
Confidence 66667788877654
No 67
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00021 Score=75.26 Aligned_cols=171 Identities=13% Similarity=0.092 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc----------------------CCCCceEEEEeCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK----------------------SRLPFKVWYSVGK 181 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~----------------------~~F~~~~wv~vs~ 181 (355)
+..++.|.+++.. +.-...+-++|..|+||||+|+.+.+.-... .+++ .+++.-..
T Consensus 21 e~v~~~L~~~i~~-~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~eidaas 98 (824)
T PRK07764 21 EHVTEPLSTALDS-GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTEIDAAS 98 (824)
T ss_pred HHHHHHHHHHHHh-CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEEecccc
Confidence 3445556666653 2223567899999999999999885532211 1222 22333322
Q ss_pred CCCHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEE-EecCChhHhhhcccCCccccc
Q 036086 182 NLDFSTAVQEIRNRRN-EIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVL-VTTHSTSVATMMMQTVPEAEH 259 (355)
Q Consensus 182 ~~~~~~i~~~l~~~l~-~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Il-vTTR~~~va~~~~~~~~~~~~ 259 (355)
...+.++ +++.+.+. .-..+++-++|||++...+...++.|+..+..-. ..+.+| +||....+... +.+..+.|.
T Consensus 99 ~~~Vd~i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP-~~~~fIl~tt~~~kLl~T-IrSRc~~v~ 175 (824)
T PRK07764 99 HGGVDDA-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP-EHLKFIFATTEPDKVIGT-IRSRTHHYP 175 (824)
T ss_pred cCCHHHH-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC-CCeEEEEEeCChhhhhHH-HHhheeEEE
Confidence 2233333 23333322 2234566688999998778888888888887654 455544 45555555544 443337899
Q ss_pred CCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 260 LIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 260 l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
+.+++.++....+.+.. ...... .-......|+..++|-+
T Consensus 176 F~~l~~~~l~~~L~~il-~~EGv~-id~eal~lLa~~sgGdl 215 (824)
T PRK07764 176 FRLVPPEVMRGYLERIC-AQEGVP-VEPGVLPLVIRAGGGSV 215 (824)
T ss_pred eeCCCHHHHHHHHHHHH-HHcCCC-CCHHHHHHHHHHcCCCH
Confidence 99999988877776542 111111 11233455677777766
No 68
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00057 Score=65.67 Aligned_cols=171 Identities=12% Similarity=0.071 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccC-----------------------------CCCce
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKS-----------------------------RLPFK 174 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~-----------------------------~F~~~ 174 (355)
+..++.|.+.+.. +.-...+-+.|+.|+||+|+|..+...--..+ ..+-.
T Consensus 25 ~~~~~~L~~~~~~-~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl 103 (365)
T PRK07471 25 AAAEAALLDAYRS-GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGL 103 (365)
T ss_pred HHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCe
Confidence 4444555555553 23345788999999999999976543110000 01111
Q ss_pred EEEEeC--C-------CCCHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCCh
Q 036086 175 VWYSVG--K-------NLDFSTAVQEIRNRRNEIP-SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHST 244 (355)
Q Consensus 175 ~wv~vs--~-------~~~~~~i~~~l~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~ 244 (355)
.|+.-. . ...+.. .+++.+.+.... .+.+-++|+||+...+....+.|...+..-. .++.+|++|.+.
T Consensus 104 ~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp-~~~~~IL~t~~~ 181 (365)
T PRK07471 104 LTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP-ARSLFLLVSHAP 181 (365)
T ss_pred EEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC-CCeEEEEEECCc
Confidence 233210 1 011111 123333333222 3566789999998778888888887776654 456666666654
Q ss_pred -hHhhhcccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 245 -SVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 245 -~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
.+... +.+....+.+.+++.++..+++.... .. ... .....++..++|.|..+
T Consensus 182 ~~llpt-i~SRc~~i~l~~l~~~~i~~~L~~~~-~~-~~~----~~~~~l~~~s~Gsp~~A 235 (365)
T PRK07471 182 ARLLPT-IRSRCRKLRLRPLAPEDVIDALAAAG-PD-LPD----DPRAALAALAEGSVGRA 235 (365)
T ss_pred hhchHH-hhccceEEECCCCCHHHHHHHHHHhc-cc-CCH----HHHHHHHHHcCCCHHHH
Confidence 33333 33333689999999999999998753 11 111 11256788999999654
No 69
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.95 E-value=0.00021 Score=67.26 Aligned_cols=141 Identities=9% Similarity=0.157 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhc-CCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEI-PSS 202 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~-l~~ 202 (355)
+..++.+..++.. +.-..++-++|++|+||||+|+.+++. .... ...++.+. .....+...+....... +.+
T Consensus 27 ~~~~~~l~~~~~~-~~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~~~i~~~l~~~~~~~~~~~ 99 (316)
T PHA02544 27 AADKETFKSIVKK-GRIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRIDFVRNRLTRFASTVSLTG 99 (316)
T ss_pred HHHHHHHHHHHhc-CCCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccHHHHHHHHHHHHHhhcccC
Confidence 5666677777764 334567888999999999999999873 2211 22344443 22222111122211111 124
Q ss_pred CcEEEEEeCCCCC-ChhhHHHHHHhhccCCCCCcEEEEecCChh-HhhhcccCCcccccCCCCChhhHHHHhh
Q 036086 203 KRLLFALDDVSHL-NDDNLANLRLLVSDMRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIYFSESNSWSNLN 273 (355)
Q Consensus 203 kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~L~~~~s~~Lf~ 273 (355)
.+-++|+||+... .......+...+.... .++++|+||.... +... +.+....+.+...+.++...++.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~-~~~~~Ilt~n~~~~l~~~-l~sR~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYS-KNCSFIITANNKNGIIEP-LRSRCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcC-CCceEEEEcCChhhchHH-HHhhceEEEeCCCCHHHHHHHHH
Confidence 4567899999754 2233344444454444 5678888886532 2121 11111456776777776654443
No 70
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=0.00063 Score=64.44 Aligned_cols=158 Identities=14% Similarity=0.097 Sum_probs=95.1
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhcCccccC-------------------CCCceEEEEeC---CCCCHHHHHHHHHHH
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKS-------------------RLPFKVWYSVG---KNLDFSTAVQEIRNR 195 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs---~~~~~~~i~~~l~~~ 195 (355)
+.-...+-+.|+.|+||||+|..+...-...+ ..+-..|+.-. +...+..+- ++.+.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR-~l~~~ 97 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVR-ELVSF 97 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHH-HHHHH
Confidence 33456788999999999999987654221110 11122344221 223333322 44444
Q ss_pred Hhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCCh-hHhhhcccCCcccccCCCCChhhHHHHhh
Q 036086 196 RNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHST-SVATMMMQTVPEAEHLIYFSESNSWSNLN 273 (355)
Q Consensus 196 l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~l~~L~~~~s~~Lf~ 273 (355)
+... ..+++-++|+|++..-+....+.+...+..-. .++.+|+||.+. .+... +-+....+++.+++.++....+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-~~~~fiL~t~~~~~ll~T-I~SRc~~~~~~~~~~~~~~~~L~ 175 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS-GDTVLLLISHQPSRLLPT-IKSRCQQQACPLPSNEESLQWLQ 175 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCC-CCeEEEEEECChhhCcHH-HHhhceeeeCCCcCHHHHHHHHH
Confidence 4332 23444455779998777888888888876654 566666766654 34333 33333689999999999988887
Q ss_pred hhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 274 CELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 274 ~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
... +.. ...-+..++..++|.|..+
T Consensus 176 ~~~-~~~-----~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 176 QAL-PES-----DERERIELLTLAGGSPLRA 200 (328)
T ss_pred Hhc-ccC-----ChHHHHHHHHHcCCCHHHH
Confidence 652 111 1223345678999999654
No 71
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.0004 Score=70.53 Aligned_cols=171 Identities=12% Similarity=0.105 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc----------------------CCCCceEEEEeCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK----------------------SRLPFKVWYSVGK 181 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~----------------------~~F~~~~wv~vs~ 181 (355)
+.-++.|.+++.. +.-...+-+.|+.|+||||+|+.+.+.-... .+.+ .+.+..+.
T Consensus 19 ~~i~~~L~~~i~~-~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d-vieidaas 96 (584)
T PRK14952 19 EHVTEPLSSALDA-GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID-VVELDAAS 96 (584)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce-EEEecccc
Confidence 4445556666653 2334567899999999999999876532111 1111 22333322
Q ss_pred CCCHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcE-EEEecCChhHhhhcccCCccccc
Q 036086 182 NLDFSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFY-VLVTTHSTSVATMMMQTVPEAEH 259 (355)
Q Consensus 182 ~~~~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~-IlvTTR~~~va~~~~~~~~~~~~ 259 (355)
...+..+ +++.+.+... ..+++=++|+|++..-+....+.|+..+..-. .... |++||....+... +.+....++
T Consensus 97 ~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp-~~~~fIL~tte~~kll~T-I~SRc~~~~ 173 (584)
T PRK14952 97 HGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP-EHLIFIFATTEPEKVLPT-IRSRTHHYP 173 (584)
T ss_pred ccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC-CCeEEEEEeCChHhhHHH-HHHhceEEE
Confidence 2233332 3444433322 23556688999998777888888888887654 4455 4456665555544 333336899
Q ss_pred CCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 260 LIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 260 l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
+.+++.++....+.+.+-.... .--.....-|+..++|-+
T Consensus 174 F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~Gdl 213 (584)
T PRK14952 174 FRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSP 213 (584)
T ss_pred eeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 9999999887777654321111 111234455667777766
No 72
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00045 Score=70.62 Aligned_cols=170 Identities=11% Similarity=0.078 Sum_probs=94.5
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc----------------------------cCCCCceEE
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV----------------------------KSRLPFKVW 176 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~----------------------------~~~F~~~~w 176 (355)
.-+..|.+.+.. +.-...+-++|+.|+||||+|..+.+.-.. ..||+...+
T Consensus 23 ~i~~~L~~~i~~-~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~ 101 (620)
T PRK14954 23 HITHTIQNSLRM-DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEF 101 (620)
T ss_pred HHHHHHHHHHHc-CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEe
Confidence 334445554542 223456889999999999999776542211 112332211
Q ss_pred EEeCCCCCHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEE-EecCChhHhhhcccCC
Q 036086 177 YSVGKNLDFSTAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVL-VTTHSTSVATMMMQTV 254 (355)
Q Consensus 177 v~vs~~~~~~~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Il-vTTR~~~va~~~~~~~ 254 (355)
.......+..+. ++.+.+.. -..+++-++|+|++..-+....+.|...+..-. ..+.+| +|++...+... +...
T Consensus 102 -d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp-~~tv~IL~t~~~~kLl~T-I~SR 177 (620)
T PRK14954 102 -DAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP-PHAIFIFATTELHKIPAT-IASR 177 (620)
T ss_pred -cccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC-CCeEEEEEeCChhhhhHH-HHhh
Confidence 111222233333 33333321 234556678999998666667888888776644 445544 45554555443 3333
Q ss_pred cccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 255 PEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 255 ~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
...+++.+++.++....+.+.+-.... .--.+....++..++|-+
T Consensus 178 c~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdl 222 (620)
T PRK14954 178 CQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSM 222 (620)
T ss_pred ceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCH
Confidence 368999999998887666654321111 112345556777887744
No 73
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.88 E-value=6.8e-05 Score=69.65 Aligned_cols=128 Identities=14% Similarity=0.153 Sum_probs=69.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH-HHH----HHHHHHhhcCCCCcEEEEEeCCCCC--
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFST-AVQ----EIRNRRNEIPSSKRLLFALDDVSHL-- 215 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~-i~~----~l~~~l~~~l~~kr~LlVlDdvw~~-- 215 (355)
-+.++|++|+||||+|+.+..-..-........|+.++.. ++.. ... .....+.+. ..-+|+||++..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~-~l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~ 135 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD-DLVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYR 135 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH-HHhHhhcccchHHHHHHHHHc---cCcEEEEechhhhcc
Confidence 4778999999999999766542111111111235555421 1111 000 112222222 2358899998621
Q ss_pred -------ChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhcccC-------CcccccCCCCChhhHHHHhhhhC
Q 036086 216 -------NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQT-------VPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 216 -------~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~-------~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
....++.+...+.... .+-+||++|.....-.. ... ....+++++++.+|-..++.+.+
T Consensus 136 ~~~~~~~~~~~~~~Ll~~le~~~-~~~~vI~a~~~~~~~~~-~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 136 PDNERDYGQEAIEILLQVMENQR-DDLVVILAGYKDRMDSF-FESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred CCCccchHHHHHHHHHHHHhcCC-CCEEEEEeCCcHHHHHH-HhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 1233455566665554 56677777654332211 110 01468899999999999987764
No 74
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.0005 Score=70.46 Aligned_cols=171 Identities=11% Similarity=0.060 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcc---------------------ccCCCCceEEEEeCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDD---------------------VKSRLPFKVWYSVGKN 182 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~---------------------~~~~F~~~~wv~vs~~ 182 (355)
+..++.|.+++.. +.-...+-++|+.|+||||+|..+...-. ...+|+. ..+..+..
T Consensus 23 ~~~~~~L~~~i~~-~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ld~~~~ 100 (614)
T PRK14971 23 EALTTTLKNAIAT-NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HELDAASN 100 (614)
T ss_pred HHHHHHHHHHHHc-CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEeccccc
Confidence 4445566666653 22345688999999999999987654211 1124543 23333333
Q ss_pred CCHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEE-ecCChhHhhhcccCCcccccC
Q 036086 183 LDFSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLV-TTHSTSVATMMMQTVPEAEHL 260 (355)
Q Consensus 183 ~~~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~l 260 (355)
..+..+. .+...+... ..+++=++|+|++..-+...++.|...+..-. .++.+|+ ||....+-.. +.+...++++
T Consensus 101 ~~vd~Ir-~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp-~~tifIL~tt~~~kIl~t-I~SRc~iv~f 177 (614)
T PRK14971 101 NSVDDIR-NLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP-SYAIFILATTEKHKILPT-ILSRCQIFDF 177 (614)
T ss_pred CCHHHHH-HHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC-CCeEEEEEeCCchhchHH-HHhhhheeec
Confidence 3344433 333333222 33556688999998767778888888877654 4565544 5555555444 3333368999
Q ss_pred CCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 261 IYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 261 ~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
.++++++....+.+.+-...- ..-......|+..++|-+
T Consensus 178 ~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdl 216 (614)
T PRK14971 178 NRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGM 216 (614)
T ss_pred CCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 999999988777764322111 111234566677777755
No 75
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00069 Score=69.31 Aligned_cols=172 Identities=13% Similarity=0.120 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccC---------------------CCCceEEEEeCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKS---------------------RLPFKVWYSVGKN 182 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~wv~vs~~ 182 (355)
+.-++.|.+++.. +.-...+-++|+.|+||||+|+.+.+.-.... |.+ .+.+..+..
T Consensus 22 ~~~~~~L~~~i~~-~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d-~~~i~~~~~ 99 (585)
T PRK14950 22 EHVVQTLRNAIAE-GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD-VIEMDAASH 99 (585)
T ss_pred HHHHHHHHHHHHh-CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe-EEEEecccc
Confidence 4445555555553 22235667999999999999998865321111 111 122222222
Q ss_pred CCHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEec-CChhHhhhcccCCcccccC
Q 036086 183 LDFSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTT-HSTSVATMMMQTVPEAEHL 260 (355)
Q Consensus 183 ~~~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTT-R~~~va~~~~~~~~~~~~l 260 (355)
..+..+ +++.+.+... ..+++-++|+|++..-+....+.|...+..-. ..+.+|++| ....+... +.+....+.+
T Consensus 100 ~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-~~tv~Il~t~~~~kll~t-I~SR~~~i~f 176 (585)
T PRK14950 100 TSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-PHAIFILATTEVHKVPAT-ILSRCQRFDF 176 (585)
T ss_pred CCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-CCeEEEEEeCChhhhhHH-HHhccceeeC
Confidence 333332 2344333322 23567789999997666677888877776654 456655554 43444333 2222257889
Q ss_pred CCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCch
Q 036086 261 IYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTS 302 (355)
Q Consensus 261 ~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPl 302 (355)
.+++.++....+...+-..... --.+....++..|+|-+-
T Consensus 177 ~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr 216 (585)
T PRK14950 177 HRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMR 216 (585)
T ss_pred CCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 9999988887776654222111 113556677888888774
No 76
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.85 E-value=0.0001 Score=66.27 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=29.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVG 180 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 180 (355)
--++|+|..|+|||||...+.. .....|.++.+++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEecC
Confidence 3578999999999999999887 567788777776543
No 77
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.83 E-value=3.8e-05 Score=62.09 Aligned_cols=95 Identities=21% Similarity=0.203 Sum_probs=51.6
Q ss_pred EEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC--CHHHHHHHHHHHHhhcCCC-CcEEEEEeCCCCCChhh-
Q 036086 144 IHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL--DFSTAVQEIRNRRNEIPSS-KRLLFALDDVSHLNDDN- 219 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~l~~~l~~~l~~-kr~LlVlDdvw~~~~~~- 219 (355)
|-|+|+.|+||||+|+.+.+. ...+ .+.+..+.-. ...+..+.+...+.+.-.. ++.+|++||+.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~ 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---cccccccccccccccccccccccccccccccccceeeeeccchhcccccc
Confidence 468999999999999999984 3222 2344433211 1112222333333332222 48999999986432222
Q ss_pred ----------HHHHHHhhccCCCC--CcEEEEecCC
Q 036086 220 ----------LANLRLLVSDMRLV--GFYVLVTTHS 243 (355)
Q Consensus 220 ----------~~~l~~~l~~~~~~--gs~IlvTTR~ 243 (355)
...+...+...... +..||.||..
T Consensus 76 ~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 76 PSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccccccccccceeeecccccccccccceeEEeeCC
Confidence 44455555443311 3456666665
No 78
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00088 Score=67.18 Aligned_cols=171 Identities=12% Similarity=0.089 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcc----cc----------------CCCCceEEEEeCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDD----VK----------------SRLPFKVWYSVGKNL 183 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~----~~----------------~~F~~~~wv~vs~~~ 183 (355)
+.-++.|...+.. +.-...+-++|+.|+||||+|+.+.+.-- .. .|++ ......+.+.
T Consensus 20 e~v~~~L~~~I~~-grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eldaas~~ 97 (535)
T PRK08451 20 ESVSKTLSLALDN-NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMDAASNR 97 (535)
T ss_pred HHHHHHHHHHHHc-CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEecccccc
Confidence 3445566666653 33345678999999999999997654210 00 1111 1223222222
Q ss_pred CHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCcccccCC
Q 036086 184 DFSTAVQEIRNRRN-EIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAEHLI 261 (355)
Q Consensus 184 ~~~~i~~~l~~~l~-~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~l~ 261 (355)
.+..+. ++..... .-..+++-++|+|++..-+.+..+.|+..+..-. ..+++|++|.+ ..+... ..+....+++.
T Consensus 98 gId~IR-elie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp-~~t~FIL~ttd~~kL~~t-I~SRc~~~~F~ 174 (535)
T PRK08451 98 GIDDIR-ELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP-SYVKFILATTDPLKLPAT-ILSRTQHFRFK 174 (535)
T ss_pred CHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC-CceEEEEEECChhhCchH-HHhhceeEEcC
Confidence 233322 2222222 1123556688999998777778888887776544 55665555544 333333 22223689999
Q ss_pred CCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 262 YFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 262 ~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
+++.++....+.+.+-...- .--......|+..++|-+
T Consensus 175 ~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~Gdl 212 (535)
T PRK08451 175 QIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSL 212 (535)
T ss_pred CCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcH
Confidence 99999887777654321111 111345566778888877
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.81 E-value=0.00019 Score=65.80 Aligned_cols=133 Identities=14% Similarity=0.064 Sum_probs=67.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHH----HHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTA----VQEIRNRRNEIPSSKRLLFALDDVSHL 215 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i----~~~l~~~l~~~l~~kr~LlVlDdvw~~ 215 (355)
...-+.++|++|+||||+|+.+.+.-.-...-....++.++..--.... ...+...+.... ..+|++|++..-
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L 117 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSL 117 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhh
Confidence 3455778999999999999998752100011111123333221000000 002222232221 248899999731
Q ss_pred C--------hhhHHHHHHhhccCCCCCcEEEEecCChhHhh------hcccCCcccccCCCCChhhHHHHhhhhC
Q 036086 216 N--------DDNLANLRLLVSDMRLVGFYVLVTTHSTSVAT------MMMQTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 216 ~--------~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~------~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
. .+..+.+...+.... ....+++++....... .+.......+++++++.++-.+++.+.+
T Consensus 118 ~~~~~~~~~~~~i~~Ll~~~e~~~-~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 118 ARGGEKDFGKEAIDTLVKGMEDNR-NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred ccCCccchHHHHHHHHHHHHhccC-CCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 1 223444555554443 3345555554433211 1011111457889999999998888765
No 80
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.0015 Score=65.16 Aligned_cols=172 Identities=15% Similarity=0.081 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc-------------------cCCCCceEEEEeCCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV-------------------KSRLPFKVWYSVGKNLD 184 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~wv~vs~~~~ 184 (355)
+.-.+.|.+++.. +.-...+-++|+.|+||||+|+.+...-.. ...|....++..+.+..
T Consensus 22 ~~i~~~L~~~i~~-~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~g 100 (486)
T PRK14953 22 EIVVRILKNAVKL-QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRG 100 (486)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCC
Confidence 4445555666653 223456778999999999999987542110 01122233443333333
Q ss_pred HHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEE-ecCChhHhhhcccCCcccccCCC
Q 036086 185 FSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLV-TTHSTSVATMMMQTVPEAEHLIY 262 (355)
Q Consensus 185 ~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~l~~ 262 (355)
+..+ +.+.+.+... ..+++-++|+|++..-+....+.+...+.... ....+|+ ||+...+... +......+.+.+
T Consensus 101 vd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp-~~~v~Il~tt~~~kl~~t-I~SRc~~i~f~~ 177 (486)
T PRK14953 101 IDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP-PRTIFILCTTEYDKIPPT-ILSRCQRFIFSK 177 (486)
T ss_pred HHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC-CCeEEEEEECCHHHHHHH-HHHhceEEEcCC
Confidence 3322 2333333222 34667799999998656667777777776544 4455444 5554444333 222225789999
Q ss_pred CChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 263 FSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 263 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
++.++-...+.+.+-...- ..-......++..++|-+
T Consensus 178 ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~l 214 (486)
T PRK14953 178 PTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGM 214 (486)
T ss_pred CCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 9999887777664321111 111234455667777755
No 81
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.76 E-value=9.3e-05 Score=73.36 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=73.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCC-c-eEEEEeCCCCCHHHHHHH----HHHHHhhcCCCCcEEEEEeCCC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLP-F-KVWYSVGKNLDFSTAVQE----IRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~i~~~----l~~~l~~~l~~kr~LlVlDdvw 213 (355)
...-+.|+|..|+|||+|++.+.+ .+...+. . ..+++... + ...+... ....+.+.+. +.-+|+|||+.
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~ 221 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSEK-F-TNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQ 221 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHHH-H-HHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhh
Confidence 345688999999999999999998 4444432 2 33554332 1 1112111 1122333333 24489999996
Q ss_pred CCChh--hHHHHHHhhcc-CCCCCcEEEEecCChh---------HhhhcccCCcccccCCCCChhhHHHHhhhhCC
Q 036086 214 HLNDD--NLANLRLLVSD-MRLVGFYVLVTTHSTS---------VATMMMQTVPEAEHLIYFSESNSWSNLNCELP 277 (355)
Q Consensus 214 ~~~~~--~~~~l~~~l~~-~~~~gs~IlvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 277 (355)
..... ..+.+...+.. .. .|..||+||.... +... +... .++.+++++.++-..++++.+-
T Consensus 222 ~l~~~~~~~~~l~~~~n~l~~-~~~~iiits~~~p~~l~~l~~~l~SR-l~~g-l~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 222 FLAGKERTQEEFFHTFNALHE-AGKQIVLTSDRPPKELPGLEERLRSR-FEWG-LTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred hhcCCHHHHHHHHHHHHHHHH-CCCcEEEECCCCHHHHHHHHHHHHhH-hcCC-eeEEecCCCHHHHHHHHHHHHH
Confidence 42211 12333333322 12 3455888776431 2223 3333 5789999999999999988763
No 82
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.001 Score=68.75 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc-----------------CCCCceEEEEeCCCCCHH
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK-----------------SRLPFKVWYSVGKNLDFS 186 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~-----------------~~F~~~~wv~vs~~~~~~ 186 (355)
+..++.|.+++.. +.-...+-++|+.|+||||+|+.+...--.. .+++ .+++.......+.
T Consensus 24 e~~v~~L~~aI~~-~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieidaasn~~vd 101 (725)
T PRK07133 24 DHIVQTLKNIIKS-NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDAASNNGVD 101 (725)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEeccccCCHH
Confidence 3445556666653 2334567789999999999998875421110 1111 1222222222233
Q ss_pred HHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcE-EEEecCChhHhhhcccCCcccccCCCCC
Q 036086 187 TAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFY-VLVTTHSTSVATMMMQTVPEAEHLIYFS 264 (355)
Q Consensus 187 ~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~-IlvTTR~~~va~~~~~~~~~~~~l~~L~ 264 (355)
. .+++.+.+... ..+++-++|+|++..-+...+..|...+..-. ..+. |++||....+... +-+....+.+.+++
T Consensus 102 ~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP-~~tifILaTte~~KLl~T-I~SRcq~ieF~~L~ 178 (725)
T PRK07133 102 E-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP-KHVIFILATTEVHKIPLT-ILSRVQRFNFRRIS 178 (725)
T ss_pred H-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC-CceEEEEEcCChhhhhHH-HHhhceeEEccCCC
Confidence 2 23444444432 34666789999998667778888887776544 3444 4556655555443 33222689999999
Q ss_pred hhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 265 ESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 265 ~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
.++....+...+-...- ..-......++..++|-+
T Consensus 179 ~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~Gsl 213 (725)
T PRK07133 179 EDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSL 213 (725)
T ss_pred HHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 99988777654321111 111234556778887765
No 83
>CHL00181 cbbX CbbX; Provisional
Probab=97.75 E-value=0.00027 Score=65.77 Aligned_cols=128 Identities=10% Similarity=0.112 Sum_probs=70.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----HHHHHHhhcCCCCcEEEEEeCCCCC--
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-----EIRNRRNEIPSSKRLLFALDDVSHL-- 215 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-----~l~~~l~~~l~~kr~LlVlDdvw~~-- 215 (355)
.+.+.|++|+||||+|+.+++...-...-...-|+.++.. ++..-+. .....+.+. ..-+|++|++..-
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~-~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~ 136 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD-DLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYK 136 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH-HHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhcc
Confidence 4778999999999999999662111111111225555522 1111010 112222222 2248999998631
Q ss_pred -------ChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhcc-------cCCcccccCCCCChhhHHHHhhhhC
Q 036086 216 -------NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMM-------QTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 216 -------~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~-------~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
..+..+.|...+.... .+.+||+++....+... . +.....+.+.+++.++..+++...+
T Consensus 137 ~~~~~~~~~e~~~~L~~~me~~~-~~~~vI~ag~~~~~~~~-~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 137 PDNERDYGSEAIEILLQVMENQR-DDLVVIFAGYKDRMDKF-YESNPGLSSRIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred CCCccchHHHHHHHHHHHHhcCC-CCEEEEEeCCcHHHHHH-HhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence 1233344555555554 55677777765444221 1 1112468899999999988887765
No 84
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.73 E-value=0.00014 Score=71.14 Aligned_cols=129 Identities=14% Similarity=0.099 Sum_probs=70.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCC-C-ceEEEEeCCCCCHHHHHHHH----HHHHhhcCCCCcEEEEEeCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRL-P-FKVWYSVGKNLDFSTAVQEI----RNRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~i~~~l----~~~l~~~l~~kr~LlVlDdvw~ 214 (355)
...+.|+|..|+|||+|++.+++ .+.... . ..++++... + ...+...+ ...+.+.+.+ .-+|+|||+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~dlLiiDDi~~ 210 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSSEK-F-TNDFVNALRNNKMEEFKEKYRS-VDLLLIDDIQF 210 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEHHH-H-HHHHHHHHHcCCHHHHHHHHHh-CCEEEEehhhh
Confidence 45688999999999999999998 333332 2 234554321 1 11111111 1112222222 34899999974
Q ss_pred CChh-hH-HHHHHhhccC-CCCCcEEEEecCCh-h--------HhhhcccCCcccccCCCCChhhHHHHhhhhCC
Q 036086 215 LNDD-NL-ANLRLLVSDM-RLVGFYVLVTTHST-S--------VATMMMQTVPEAEHLIYFSESNSWSNLNCELP 277 (355)
Q Consensus 215 ~~~~-~~-~~l~~~l~~~-~~~gs~IlvTTR~~-~--------va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 277 (355)
.... .+ +.+...+... . .|..+|+||... . +... +... ..+.+.+.+.++-..++.+.+-
T Consensus 211 l~~~~~~~~~l~~~~n~~~~-~~~~iiits~~~p~~l~~l~~~l~SR-l~~g-~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 211 LAGKERTQEEFFHTFNALHE-NGKQIVLTSDRPPKELPGLEERLRSR-FEWG-LVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred hcCCHHHHHHHHHHHHHHHH-CCCCEEEecCCCHHHHhhhhhhhhhh-ccCC-eEEEeCCCCHHHHHHHHHHHHH
Confidence 2221 11 2333333221 2 345678877542 1 2222 2222 4688999999999999888763
No 85
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.72 E-value=0.00019 Score=65.83 Aligned_cols=176 Identities=16% Similarity=0.140 Sum_probs=102.7
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEE-EEeCCCCCHHHHHH-------HHHHHHh
Q 036086 126 SVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVW-YSVGKNLDFSTAVQ-------EIRNRRN 197 (355)
Q Consensus 126 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~i~~-------~l~~~l~ 197 (355)
.+.-|.+.+. ....+..-.+|++|.|||+-|......-.-.+-|.+++- .++|..-... +.+ .+.....
T Consensus 44 vV~~L~~a~~--~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Kik~fakl~~~~~ 120 (346)
T KOG0989|consen 44 VVQVLKNALL--RRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKIKNFAKLTVLLK 120 (346)
T ss_pred HHHHHHHHHh--hcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhhcCHHHHhhccc
Confidence 3344444444 356788889999999999988776543222445665552 3444322111 111 1111111
Q ss_pred hcCC--CCc-EEEEEeCCCCCChhhHHHHHHhhccCCCCCcE-EEEecCChhHhhhcccCCcccccCCCCChhhHHHHhh
Q 036086 198 EIPS--SKR-LLFALDDVSHLNDDNLANLRLLVSDMRLVGFY-VLVTTHSTSVATMMMQTVPEAEHLIYFSESNSWSNLN 273 (355)
Q Consensus 198 ~~l~--~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~-IlvTTR~~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~ 273 (355)
.... .++ =.+|||++.....+.|..++..+.+-. ..++ |+||+--..+... +.+...-|+.++|.+++...-+.
T Consensus 121 ~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-~~trFiLIcnylsrii~p-i~SRC~KfrFk~L~d~~iv~rL~ 198 (346)
T KOG0989|consen 121 RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-RTTRFILICNYLSRIIRP-LVSRCQKFRFKKLKDEDIVDRLE 198 (346)
T ss_pred cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-cceEEEEEcCChhhCChH-HHhhHHHhcCCCcchHHHHHHHH
Confidence 1111 133 368899998778899999988877644 4555 5666654444444 33332578999999998888777
Q ss_pred hhCCCCCCCcchHHHHHHHHHHhcCCCc-hHHHHHH
Q 036086 274 CELPPSSQEAHRVEDLETGSAMDEEGVT-SLTQFLL 308 (355)
Q Consensus 274 ~~af~~~~~~~~~~~~~~~i~~~c~GlP-la~~~~~ 308 (355)
..+-..+ -.--.+..+.|++.++|-. -|+.++.
T Consensus 199 ~Ia~~E~--v~~d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 199 KIASKEG--VDIDDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHHHHhC--CCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 7653221 1122355567788887755 4444443
No 86
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.0018 Score=65.77 Aligned_cols=171 Identities=12% Similarity=0.094 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc--------------------CCCCceEEEEeCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK--------------------SRLPFKVWYSVGKNL 183 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~ 183 (355)
+.-++.|.+++.. +.-...+-++|+.|+||||+|+.+.+.-... .+++. .++....+.
T Consensus 22 e~iv~~L~~~i~~-~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv-~~idgas~~ 99 (563)
T PRK06647 22 DFVVETLKHSIES-NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV-IEIDGASNT 99 (563)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-EEecCcccC
Confidence 4455666666664 2334578899999999999999886632211 12332 233222223
Q ss_pred CHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEe-cCChhHhhhcccCCcccccCC
Q 036086 184 DFSTAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVT-THSTSVATMMMQTVPEAEHLI 261 (355)
Q Consensus 184 ~~~~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvT-TR~~~va~~~~~~~~~~~~l~ 261 (355)
.+..+- ++.+.+.. -..+++-++|+|++..-+...++.|...+..-. ..+.+|++ |....+... +.+....+++.
T Consensus 100 ~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp-~~~vfI~~tte~~kL~~t-I~SRc~~~~f~ 176 (563)
T PRK06647 100 SVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP-PYIVFIFATTEVHKLPAT-IKSRCQHFNFR 176 (563)
T ss_pred CHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC-CCEEEEEecCChHHhHHH-HHHhceEEEec
Confidence 333332 33333222 234566689999998767777888887776544 45555554 444444433 33222578999
Q ss_pred CCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 262 YFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 262 ~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
+++.++-...+.+.+....- .--......|+..++|-+
T Consensus 177 ~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~Gdl 214 (563)
T PRK06647 177 LLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSV 214 (563)
T ss_pred CCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 99998888777765432211 112344555667777766
No 87
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=8.7e-05 Score=73.17 Aligned_cols=128 Identities=9% Similarity=0.072 Sum_probs=71.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH----HHHHHhhcCCCCcEEEEEeCCCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQE----IRNRRNEIPSSKRLLFALDDVSHLN 216 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~----l~~~l~~~l~~kr~LlVlDdvw~~~ 216 (355)
..-+.|+|+.|+|||+|++.+.+. +...-...++++... +. ..+... -...++..+. ..-+|++||+....
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~~~-f~-~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~ 215 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRSEL-FT-EHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFS 215 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeHHH-HH-HHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhc
Confidence 356789999999999999999983 332222234444221 10 011111 1122333332 34588899987432
Q ss_pred hhh--HHHHHHhhcc-CCCCCcEEEEecCCh---------hHhhhcccCCcccccCCCCChhhHHHHhhhhC
Q 036086 217 DDN--LANLRLLVSD-MRLVGFYVLVTTHST---------SVATMMMQTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 217 ~~~--~~~l~~~l~~-~~~~gs~IlvTTR~~---------~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
... .+.+...+.. .. .|..||+||... .+... +... -.+.+.+++.++-..++.+++
T Consensus 216 ~k~~~qeelf~l~N~l~~-~~k~IIlts~~~p~~l~~l~~rL~SR-~~~G-l~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 216 GKGATQEEFFHTFNSLHT-EGKLIVISSTCAPQDLKAMEERLISR-FEWG-IAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred CChhhHHHHHHHHHHHHH-CCCcEEEecCCCHHHHhhhHHHHHhh-hcCC-eEEecCCCCHHHHHHHHHHHH
Confidence 211 1233333321 12 355688887542 12222 3333 578899999999999988776
No 88
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.68 E-value=0.0001 Score=72.72 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=71.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCC-CCc-eEEEEeCCCCCHHHHHHH----HHHHHhhcCCCCcEEEEEeCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSR-LPF-KVWYSVGKNLDFSTAVQE----IRNRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-F~~-~~wv~vs~~~~~~~i~~~----l~~~l~~~l~~kr~LlVlDdvw~ 214 (355)
..-+.|+|..|+|||+|++.+.+ .+... .+. .+|++.++ | ...+... -...+.+....+.-+|++||+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~~~-f-~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~ 205 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSEK-F-LNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQF 205 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEHHH-H-HHHHHHHHhcccHHHHHHHHHhcCCEEEEechhh
Confidence 44589999999999999999998 44333 332 34554322 1 1111111 11122222223456899999973
Q ss_pred CC-hhhH-HHHHHhhcc-CCCCCcEEEEecC-ChhH--------hhhcccCCcccccCCCCChhhHHHHhhhhCC
Q 036086 215 LN-DDNL-ANLRLLVSD-MRLVGFYVLVTTH-STSV--------ATMMMQTVPEAEHLIYFSESNSWSNLNCELP 277 (355)
Q Consensus 215 ~~-~~~~-~~l~~~l~~-~~~~gs~IlvTTR-~~~v--------a~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 277 (355)
.. ...+ +.+...+.. .. .|..||+||. ...- ... +... -++.+++.+.+.-..++++.+-
T Consensus 206 l~~~~~~q~elf~~~n~l~~-~~k~iIitsd~~p~~l~~l~~rL~SR-~~~g-l~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 206 LIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSR-FQMG-LVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred hcCcHHHHHHHHHHHHHHHH-cCCeEEEECCCCHHHHHHHHHHHhhH-HhcC-ceEeeCCCCHHHHHHHHHHHHH
Confidence 21 1111 223333321 11 3456888874 3221 111 2233 4778999999999999888763
No 89
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.68 E-value=0.0007 Score=70.54 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHhcC---CCCeEEEEEEcCCCccHHHHHHHHhcCccc---cCCCC--ceEEEEeCCCCCHHHHHH-----
Q 036086 124 ESSVDSVKNALLRD---GNTVRFIHIVGVSGTDETAIAHRVFTDDDV---KSRLP--FKVWYSVGKNLDFSTAVQ----- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~i~~----- 190 (355)
+++.++|...|... .....++-|.|++|.|||++++.|.+.-.- ....+ ..++|....-.+...++.
T Consensus 761 EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qq 840 (1164)
T PTZ00112 761 EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQ 840 (1164)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHH
Confidence 78888888777654 223357789999999999999999763211 11122 134554433223332222
Q ss_pred -------------HHHHHHhhcC-C--CCcEEEEEeCCCCCChhhHHHHHHhhcc-CCCCCcEEEE--ecCCh-------
Q 036086 191 -------------EIRNRRNEIP-S--SKRLLFALDDVSHLNDDNLANLRLLVSD-MRLVGFYVLV--TTHST------- 244 (355)
Q Consensus 191 -------------~l~~~l~~~l-~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~~gs~Ilv--TTR~~------- 244 (355)
.+...+...+ . +...+||||+|..-....-+.|...|.. .. .+++|++ +|..-
T Consensus 841 L~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~-s~SKLiLIGISNdlDLperLd 919 (1164)
T PTZ00112 841 LFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK-INSKLVLIAISNTMDLPERLI 919 (1164)
T ss_pred HcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc-cCCeEEEEEecCchhcchhhh
Confidence 2222333332 1 2246899999974221111222222221 12 4566554 33221
Q ss_pred -hHhhhcccCCcccccCCCCChhhHHHHhhhhCCCCC--CCcchHHHHHHHHHHhcCCCchHHHHHH
Q 036086 245 -SVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSS--QEAHRVEDLETGSAMDEEGVTSLTQFLL 308 (355)
Q Consensus 245 -~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~--~~~~~~~~~~~~i~~~c~GlPla~~~~~ 308 (355)
.+... ++. ..+...|++.++-..++..++-... -.+..++.+++.++..-|-.-.|+..+.
T Consensus 920 PRLRSR-Lg~--eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILR 983 (1164)
T PTZ00112 920 PRCRSR-LAF--GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICR 983 (1164)
T ss_pred hhhhhc-ccc--ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 12222 222 2467799999999999998864221 1344455666655555555567776655
No 90
>PRK08118 topology modulation protein; Reviewed
Probab=97.67 E-value=3.2e-05 Score=66.08 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=40.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCcccc-CCCCceEE----EEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVK-SRLPFKVW----YSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~-~~F~~~~w----v~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
-|.|+|++|+||||||+.+++...+. -+||..+| +.+++ . +....+.+.+++.. .|+|..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~----~----~~~~~~~~~~~~~~--wVidG~~ 68 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPK----E----EQITVQNELVKEDE--WIIDGNY 68 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCH----H----HHHHHHHHHhcCCC--EEEeCCc
Confidence 58899999999999999999865554 46787774 43332 1 12222333344445 4778876
No 91
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.65 E-value=4.9e-05 Score=67.88 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=81.1
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCC-Cc-eEEEEeCCCCCHHHHHHHH--------HHHHhhcCCCCcEEE
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRL-PF-KVWYSVGKNLDFSTAVQEI--------RNRRNEIPSSKRLLF 207 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~vs~~~~~~~i~~~l--------~~~l~~~l~~kr~Ll 207 (355)
+.....+-|+|..|+|||.|.+.+++ .+.... +. +++++. .+..... ...+.+.+. .-=+|
T Consensus 31 ~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL 101 (219)
T PF00308_consen 31 GERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLSA------EEFIREFADALRDGEIEEFKDRLR-SADLL 101 (219)
T ss_dssp TTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEEH------HHHHHHHHHHHHTTSHHHHHHHHC-TSSEE
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeecH------HHHHHHHHHHHHcccchhhhhhhh-cCCEE
Confidence 33445578999999999999999998 443322 22 334432 2222211 122333333 34578
Q ss_pred EEeCCCCCC-hhhHHH-HHHhhcc-CCCCCcEEEEecCCh---------hHhhhcccCCcccccCCCCChhhHHHHhhhh
Q 036086 208 ALDDVSHLN-DDNLAN-LRLLVSD-MRLVGFYVLVTTHST---------SVATMMMQTVPEAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 208 VlDdvw~~~-~~~~~~-l~~~l~~-~~~~gs~IlvTTR~~---------~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~ 275 (355)
++||+..-. ...|.. +...+.. .. .|-+||+|+... .+... +... -++++.++++++-..++.+.
T Consensus 102 ~iDDi~~l~~~~~~q~~lf~l~n~~~~-~~k~li~ts~~~P~~l~~~~~~L~SR-l~~G-l~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 102 IIDDIQFLAGKQRTQEELFHLFNRLIE-SGKQLILTSDRPPSELSGLLPDLRSR-LSWG-LVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp EEETGGGGTTHHHHHHHHHHHHHHHHH-TTSEEEEEESS-TTTTTTS-HHHHHH-HHCS-EEEEE----HHHHHHHHHHH
T ss_pred EEecchhhcCchHHHHHHHHHHHHHHh-hCCeEEEEeCCCCccccccChhhhhh-Hhhc-chhhcCCCCHHHHHHHHHHH
Confidence 999997432 233433 2222222 12 466899998543 22233 3344 57999999999999999887
Q ss_pred CCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 276 LPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 276 af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
+-...- .-.+++..-++..+.+-.
T Consensus 179 a~~~~~--~l~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 179 AKERGI--ELPEEVIEYLARRFRRDV 202 (219)
T ss_dssp HHHTT----S-HHHHHHHHHHTTSSH
T ss_pred HHHhCC--CCcHHHHHHHHHhhcCCH
Confidence 632221 123456666667665544
No 92
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.63 E-value=0.00024 Score=57.21 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=41.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHH-------H--------HHHHHHhhcCCCC-cE
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAV-------Q--------EIRNRRNEIPSSK-RL 205 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~-------~--------~l~~~l~~~l~~k-r~ 205 (355)
..+.|+|++|+||||+++.+... ........+.+..+......... . .....+.+..... ..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999873 32222234455444332211110 0 1122222222222 49
Q ss_pred EEEEeCCCCC
Q 036086 206 LFALDDVSHL 215 (355)
Q Consensus 206 LlVlDdvw~~ 215 (355)
+|++|++...
T Consensus 81 viiiDei~~~ 90 (148)
T smart00382 81 VLILDEITSL 90 (148)
T ss_pred EEEEECCccc
Confidence 9999999853
No 93
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.0022 Score=63.53 Aligned_cols=171 Identities=14% Similarity=0.119 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc---------------------cCCCCceEEEEeCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV---------------------KSRLPFKVWYSVGKN 182 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~~wv~vs~~ 182 (355)
+..++.|.+++.. +.-...+-++|+.|+||||+|+.+.+.-.. ..+++. .++.-+..
T Consensus 23 ~~~v~~L~~~i~~-~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~-~~i~g~~~ 100 (451)
T PRK06305 23 DAVVAVLKNALRF-NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV-LEIDGASH 100 (451)
T ss_pred HHHHHHHHHHHHc-CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce-EEeecccc
Confidence 4445555665553 222456788999999999999887542110 112221 12221122
Q ss_pred CCHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEec-CChhHhhhcccCCcccccC
Q 036086 183 LDFSTAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTT-HSTSVATMMMQTVPEAEHL 260 (355)
Q Consensus 183 ~~~~~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTT-R~~~va~~~~~~~~~~~~l 260 (355)
.....+- ++.+.+.- ...+++-++|+|++...+....+.|...+..-. ....+|++| +...+... +......+++
T Consensus 101 ~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~-~~~~~Il~t~~~~kl~~t-I~sRc~~v~f 177 (451)
T PRK06305 101 RGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP-QHVKFFLATTEIHKIPGT-ILSRCQKMHL 177 (451)
T ss_pred CCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-CCceEEEEeCChHhcchH-HHHhceEEeC
Confidence 2223322 23222221 123567788999987555566677777776544 455555554 43333333 2222267899
Q ss_pred CCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 261 IYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 261 ~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
.++++++....+...+-.... .--.+....++..++|-+
T Consensus 178 ~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdl 216 (451)
T PRK06305 178 KRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSL 216 (451)
T ss_pred CCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 999999987777654321110 112345566777887755
No 94
>PRK08116 hypothetical protein; Validated
Probab=97.61 E-value=0.0002 Score=65.93 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=53.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHH-----------HHHhhcCCCCcEEEEEeC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIR-----------NRRNEIPSSKRLLFALDD 211 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~-----------~~l~~~l~~kr~LlVlDd 211 (355)
-+-++|..|+|||.||..+++. +..+-...++++++. ++..+. ..+.+.+.+- =||||||
T Consensus 116 gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~~~------ll~~i~~~~~~~~~~~~~~~~~~l~~~-dlLviDD 186 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNFPQ------LLNRIKSTYKSSGKEDENEIIRSLVNA-DLLILDD 186 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHH------HHHHHHHHHhccccccHHHHHHHhcCC-CEEEEec
Confidence 4789999999999999999994 333323345665332 222111 1222333333 3899999
Q ss_pred CCCCChhhHHH--HHHhhccC-CCCCcEEEEecCCh
Q 036086 212 VSHLNDDNLAN--LRLLVSDM-RLVGFYVLVTTHST 244 (355)
Q Consensus 212 vw~~~~~~~~~--l~~~l~~~-~~~gs~IlvTTR~~ 244 (355)
+-.+....|.. +...+... . +|..+|+||...
T Consensus 187 lg~e~~t~~~~~~l~~iin~r~~-~~~~~IiTsN~~ 221 (268)
T PRK08116 187 LGAERDTEWAREKVYNIIDSRYR-KGLPTIVTTNLS 221 (268)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHH-CCCCEEEECCCC
Confidence 95444455543 33333321 2 456689888753
No 95
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.0025 Score=65.09 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccC--------------------CCCceEEEEeCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKS--------------------RLPFKVWYSVGKNL 183 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs~~~ 183 (355)
+.-++.|.+.+.. +.-...+-++|+.|+||||+|+.+.+.-...+ +++. +.+......
T Consensus 22 ~~v~~~L~~~i~~-~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~-~eid~~s~~ 99 (576)
T PRK14965 22 EHVSRTLQNAIDT-GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV-FEIDGASNT 99 (576)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe-eeeeccCcc
Confidence 3444556666553 22345678899999999999988765321111 1121 112212222
Q ss_pred CHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEE-EecCChhHhhhcccCCcccccCC
Q 036086 184 DFSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVL-VTTHSTSVATMMMQTVPEAEHLI 261 (355)
Q Consensus 184 ~~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Il-vTTR~~~va~~~~~~~~~~~~l~ 261 (355)
.+.++ +++.+.+... ..+++-++|+|++..-+....+.|...+..-. ..+.+| +||....+... +.+....+.+.
T Consensus 100 ~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp-~~~~fIl~t~~~~kl~~t-I~SRc~~~~f~ 176 (576)
T PRK14965 100 GVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP-PHVKFIFATTEPHKVPIT-ILSRCQRFDFR 176 (576)
T ss_pred CHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCC-CCeEEEEEeCChhhhhHH-HHHhhhhhhcC
Confidence 33332 2333333322 23556688999998767777888887776544 445544 56655555544 33333678899
Q ss_pred CCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 262 YFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 262 ~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
+++.++....+...+-...- .--......++..++|-+
T Consensus 177 ~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~l 214 (576)
T PRK14965 177 RIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSM 214 (576)
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCH
Confidence 99988877666543211110 011233444556666644
No 96
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0032 Score=59.82 Aligned_cols=134 Identities=9% Similarity=0.068 Sum_probs=80.8
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCcccc--------------------CCCCceEEEEeCCCCCHHHHHHHHHHHHh-
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDDVK--------------------SRLPFKVWYSVGKNLDFSTAVQEIRNRRN- 197 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~~~i~~~l~~~l~- 197 (355)
.-....-++|+.|+||||+|..+.+.--.. .|-|......-+....+..+- ++.+.+.
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir-~l~~~~~~ 104 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIR-YLKEEFSK 104 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHhh
Confidence 345677899999999999998874321111 122322221112223333332 3333332
Q ss_pred hcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCcccccCCCCChhhHHHHhhhh
Q 036086 198 EIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 198 ~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~ 275 (355)
....+.+=++|+|++..-+....+.+...+..-. .++.+|++|.+ ..+... +.+....+++.++++++....+...
T Consensus 105 ~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp-~~~~~Il~t~~~~~ll~T-IrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 105 SGVESNKKVYIIEHADKMTASAANSLLKFLEEPS-GGTTAILLTENKHQILPT-ILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC-CCceEEEEeCChHhCcHH-HHhhceeeeCCCCCHHHHHHHHHHc
Confidence 1234555678899998667777788888887655 56666666654 334433 3333378999999999998888654
No 97
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.56 E-value=0.00011 Score=63.06 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 124 ESSVDSVKNALLRD-GNTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
+++.+++...|... ....+.+.|+|.+|+|||+|.+.++...
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56677777777422 5567899999999999999999988743
No 98
>PRK08181 transposase; Validated
Probab=97.53 E-value=0.00013 Score=67.07 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=50.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH---------HHHHhhcCCCCcEEEEEeCCC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEI---------RNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l---------~~~l~~~l~~kr~LlVlDdvw 213 (355)
-+.++|+.|+|||.||..+.+. .....-...|+++ .+++..+ ...+.. + .+--||||||+-
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~~~~~~~~l~~-l-~~~dLLIIDDlg 177 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARRELQLESAIAK-L-DKFDLLILDDLA 177 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHhCCcHHHHHHH-H-hcCCEEEEeccc
Confidence 4889999999999999999873 2222223455543 2222211 111111 1 234599999996
Q ss_pred CCChhhHH--HHHHhhccCCCCCcEEEEecCCh
Q 036086 214 HLNDDNLA--NLRLLVSDMRLVGFYVLVTTHST 244 (355)
Q Consensus 214 ~~~~~~~~--~l~~~l~~~~~~gs~IlvTTR~~ 244 (355)
......|. .+...+...-..+ .+|+||...
T Consensus 178 ~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~ 209 (269)
T PRK08181 178 YVTKDQAETSVLFELISARYERR-SILITANQP 209 (269)
T ss_pred cccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCC
Confidence 54333332 2333333221033 488888754
No 99
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.004 Score=63.30 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc--------------------cCCCCceEEEEeCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV--------------------KSRLPFKVWYSVGKNL 183 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~--------------------~~~F~~~~wv~vs~~~ 183 (355)
+.-++.+.+++.. +.-...+-++|+.|+||||+|+.+...-.. ..|++. +.+..+.+.
T Consensus 22 ~~v~~~L~~~i~~-~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv-~eidaas~~ 99 (559)
T PRK05563 22 EHITKTLKNAIKQ-GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDV-IEIDAASNN 99 (559)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCe-EEeeccccC
Confidence 4445556666654 223456778999999999999887542111 112322 233333323
Q ss_pred CHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcE-EEEecCChhHhhhcccCCcccccCC
Q 036086 184 DFSTAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFY-VLVTTHSTSVATMMMQTVPEAEHLI 261 (355)
Q Consensus 184 ~~~~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~-IlvTTR~~~va~~~~~~~~~~~~l~ 261 (355)
.+..+- ++...+.. -..+++-++|+|++..-+...++.|...+..-. .... |+.||....+... +.+....+.+.
T Consensus 100 ~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp-~~~ifIlatt~~~ki~~t-I~SRc~~~~f~ 176 (559)
T PRK05563 100 GVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP-AHVIFILATTEPHKIPAT-ILSRCQRFDFK 176 (559)
T ss_pred CHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC-CCeEEEEEeCChhhCcHH-HHhHheEEecC
Confidence 333222 33333332 234566788999998767778888887776544 3444 4445555444433 32222578899
Q ss_pred CCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 262 YFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 262 ~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
+++.++....+...+-...- . --......|+..++|-+
T Consensus 177 ~~~~~ei~~~L~~i~~~egi-~-i~~~al~~ia~~s~G~~ 214 (559)
T PRK05563 177 RISVEDIVERLKYILDKEGI-E-YEDEALRLIARAAEGGM 214 (559)
T ss_pred CCCHHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHHcCCCH
Confidence 99998887777665421111 1 11244556667777766
No 100
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.48 E-value=0.001 Score=64.58 Aligned_cols=166 Identities=13% Similarity=0.142 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHhcC-----------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHH----
Q 036086 124 ESSVDSVKNALLRD-----------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTA---- 188 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i---- 188 (355)
++.+++|.+.+... -..++-|-++|++|+|||++|+.+.+. ...+ |+.++..--....
T Consensus 137 ~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~~~l~~~~~g~~ 209 (389)
T PRK03992 137 EEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVGSELVQKFIGEG 209 (389)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeehHHHhHhhccch
Confidence 56666666654321 133556889999999999999999883 3222 3333221000000
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCC-----------ChhhHHHHHHhhcc-----CCCCCcEEEEecCChhHhh-hcc
Q 036086 189 VQEIRNRRNEIPSSKRLLFALDDVSHL-----------NDDNLANLRLLVSD-----MRLVGFYVLVTTHSTSVAT-MMM 251 (355)
Q Consensus 189 ~~~l~~~l~~~l~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l~~-----~~~~gs~IlvTTR~~~va~-~~~ 251 (355)
.+.+...+...-...+.+|+||++..- +......+...+.. .. .+..||.||...+... .+.
T Consensus 210 ~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~-~~v~VI~aTn~~~~ld~all 288 (389)
T PRK03992 210 ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR-GNVKIIAATNRIDILDPAIL 288 (389)
T ss_pred HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC-CCEEEEEecCChhhCCHHHc
Confidence 001111121112345789999998631 11122223332211 12 3456777776543221 101
Q ss_pred --cCCcccccCCCCChhhHHHHhhhhCCCCC-CCcchHHHHHHHHHHhcCCCc
Q 036086 252 --QTVPEAEHLIYFSESNSWSNLNCELPPSS-QEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 252 --~~~~~~~~l~~L~~~~s~~Lf~~~af~~~-~~~~~~~~~~~~i~~~c~GlP 301 (355)
|.-+..+.+.+.+.++-.++|+.+..+.. .....+. .++..+.|+-
T Consensus 289 RpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~----~la~~t~g~s 337 (389)
T PRK03992 289 RPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLE----ELAELTEGAS 337 (389)
T ss_pred CCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHH----HHHHHcCCCC
Confidence 12235688999999999999987653322 1223333 3446666654
No 101
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.47 E-value=0.00083 Score=68.08 Aligned_cols=129 Identities=9% Similarity=0.038 Sum_probs=73.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCC-C-ceEEEEeCCCCCHHHHHHH----HHHHHhhcCCCCcEEEEEeCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRL-P-FKVWYSVGKNLDFSTAVQE----IRNRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~i~~~----l~~~l~~~l~~kr~LlVlDdvw~ 214 (355)
...+.|+|..|+|||.|++.+.+ .....+ . ..++++...-. ..+... ....+.+.+.. -=+|+|||+..
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yitaeef~--~el~~al~~~~~~~f~~~y~~-~DLLlIDDIq~ 388 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSSEEFT--NEFINSIRDGKGDSFRRRYRE-MDILLVDDIQF 388 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHHHHH--HHHHHHHHhccHHHHHHHhhc-CCEEEEehhcc
Confidence 34589999999999999999998 343322 2 22355432110 111111 11122222222 34899999974
Q ss_pred CCh-hhHH-HHHHhhccC-CCCCcEEEEecCCh---------hHhhhcccCCcccccCCCCChhhHHHHhhhhCC
Q 036086 215 LND-DNLA-NLRLLVSDM-RLVGFYVLVTTHST---------SVATMMMQTVPEAEHLIYFSESNSWSNLNCELP 277 (355)
Q Consensus 215 ~~~-~~~~-~l~~~l~~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 277 (355)
... ..|. .+...|... . +|..||+||... .+... +... -++.+.+.+.+.-..++.+++-
T Consensus 389 l~gke~tqeeLF~l~N~l~e-~gk~IIITSd~~P~eL~~l~~rL~SR-f~~G-Lvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 389 LEDKESTQEEFFHTFNTLHN-ANKQIVLSSDRPPKQLVTLEDRLRNR-FEWG-LITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCCCEEEecCCChHhhhhccHHHHhh-hhcC-ceEEcCCCCHHHHHHHHHHHHH
Confidence 322 2332 233333221 2 355688888752 22333 3444 6789999999999999988763
No 102
>PRK12377 putative replication protein; Provisional
Probab=97.46 E-value=0.00027 Score=64.22 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=52.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH------HHHHHhhcCCCCcEEEEEeCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQE------IRNRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~------l~~~l~~~l~~kr~LlVlDdvw~ 214 (355)
...+.++|..|+|||+||..+.+. .....-..++++++. +...++. ....+.+.+ .+--||||||+-.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~~---l~~~l~~~~~~~~~~~~~l~~l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVPD---VMSRLHESYDNGQSGEKFLQEL-CKVDLLVLDEIGI 174 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHHH---HHHHHHHHHhccchHHHHHHHh-cCCCEEEEcCCCC
Confidence 457889999999999999999984 333333346665542 1111110 011111222 3456999999954
Q ss_pred CChhhHH--HHHHhhccCCCCCcEEEEecCC
Q 036086 215 LNDDNLA--NLRLLVSDMRLVGFYVLVTTHS 243 (355)
Q Consensus 215 ~~~~~~~--~l~~~l~~~~~~gs~IlvTTR~ 243 (355)
+....|. .+...+...-.+.--+||||-.
T Consensus 175 ~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 175 QRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4444453 3333333211022336777753
No 103
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.0064 Score=62.50 Aligned_cols=173 Identities=15% Similarity=0.101 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCC-----C----------------ceEEEEeCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRL-----P----------------FKVWYSVGKN 182 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F-----~----------------~~~wv~vs~~ 182 (355)
+.-...|.+++... .-...+-++|..|+||||+|+.+...-...... . ..+.+.....
T Consensus 22 ~~i~~~L~~~l~~~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~ 100 (620)
T PRK14948 22 EAIATTLKNALISN-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASN 100 (620)
T ss_pred HHHHHHHHHHHHcC-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEecccc
Confidence 44455555555532 223467789999999999999886532211100 0 0112222222
Q ss_pred CCHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEE-EecCChhHhhhcccCCcccccC
Q 036086 183 LDFSTAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVL-VTTHSTSVATMMMQTVPEAEHL 260 (355)
Q Consensus 183 ~~~~~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Il-vTTR~~~va~~~~~~~~~~~~l 260 (355)
..+. .++++...+.. -..+++-++|+|++..-+...++.|...+..-. ..+.+| +|+....+... +.+....+.+
T Consensus 101 ~~vd-~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp-~~tvfIL~t~~~~~llpT-IrSRc~~~~f 177 (620)
T PRK14948 101 TGVD-NIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP-PRVVFVLATTDPQRVLPT-IISRCQRFDF 177 (620)
T ss_pred CCHH-HHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC-cCeEEEEEeCChhhhhHH-HHhheeEEEe
Confidence 2222 22333333322 123556688999998767778888888777544 345444 45443444333 3222257888
Q ss_pred CCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCch
Q 036086 261 IYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTS 302 (355)
Q Consensus 261 ~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPl 302 (355)
.+++.++....+...+-..... --......++..++|-+.
T Consensus 178 ~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr 217 (620)
T PRK14948 178 RRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLR 217 (620)
T ss_pred cCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHH
Confidence 8999888776665543211111 112345667788888663
No 104
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0034 Score=65.05 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=55.0
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCC---CceEEEEeCC---CCCHHHHHH--------HHHHHHhhcCCCC
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRL---PFKVWYSVGK---NLDFSTAVQ--------EIRNRRNEIPSSK 203 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~---~~~~~~i~~--------~l~~~l~~~l~~k 203 (355)
+....+.-.+|+.|+|||.||+.+... -| +..+-+.+|. .+++..+.- +-.-.|-+.++.+
T Consensus 518 ~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~ 592 (786)
T COG0542 518 NRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRK 592 (786)
T ss_pred CCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcC
Confidence 344567778999999999999887651 23 2222233332 112222211 1133344455567
Q ss_pred cE-EEEEeCCCCCChhhHHHHHHhhccC
Q 036086 204 RL-LFALDDVSHLNDDNLANLRLLVSDM 230 (355)
Q Consensus 204 r~-LlVlDdvw~~~~~~~~~l~~~l~~~ 230 (355)
+| +|.||.|...+++.++.+...|.++
T Consensus 593 PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 593 PYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred CCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 77 7888999988899999998888764
No 105
>PHA00729 NTP-binding motif containing protein
Probab=97.43 E-value=0.0021 Score=57.30 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=24.9
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 130 VKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 130 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
+++-+. +.+..-|.|.|.+|+||||||..+.+.
T Consensus 8 ~~~~l~--~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 8 IVSAYN--NNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHh--cCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 344443 334557889999999999999998873
No 106
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.42 E-value=0.0011 Score=69.77 Aligned_cols=102 Identities=15% Similarity=0.190 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCC---CCHHHHHH---
Q 036086 124 ESSVDSVKNALLRD-------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKN---LDFSTAVQ--- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~i~~--- 190 (355)
+..++.|.+.+... +....++-++|+.|+|||+||+.+... . +...+.+..|.- .....+..
T Consensus 460 ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~~~~lig~~~ 534 (731)
T TIGR02639 460 DEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHTVSRLIGAPP 534 (731)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcccHHHHhcCCC
Confidence 44455565555431 123457889999999999999999872 2 222344444431 22222221
Q ss_pred -----HHHHHHhhcCCC-CcEEEEEeCCCCCChhhHHHHHHhhccC
Q 036086 191 -----EIRNRRNEIPSS-KRLLFALDDVSHLNDDNLANLRLLVSDM 230 (355)
Q Consensus 191 -----~l~~~l~~~l~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~ 230 (355)
+....+.+.+.. ...+|+||++...+++.++.|...+..+
T Consensus 535 gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 535 GYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred CCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 011122222222 3469999999988888888888777643
No 107
>PRK09183 transposase/IS protein; Provisional
Probab=97.41 E-value=0.00019 Score=65.80 Aligned_cols=91 Identities=12% Similarity=0.142 Sum_probs=48.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH---------HHHHHHhhcCCCCcEEEEEeCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ---------EIRNRRNEIPSSKRLLFALDDV 212 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~---------~l~~~l~~~l~~kr~LlVlDdv 212 (355)
..+.|+|+.|+|||+||..+.+... ..... ..+++. .++.. .+...+...+ .+.-++|+||+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~-v~~~~~------~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdl 173 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGIK-VRFTTA------ADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEI 173 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCCe-EEEEeH------HHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEccc
Confidence 3567999999999999999976321 22222 223332 22221 1122222221 34469999999
Q ss_pred CCCChhhHH--HHHHhhcc-CCCCCcEEEEecCC
Q 036086 213 SHLNDDNLA--NLRLLVSD-MRLVGFYVLVTTHS 243 (355)
Q Consensus 213 w~~~~~~~~--~l~~~l~~-~~~~gs~IlvTTR~ 243 (355)
.......+. .+...+.. .. +++ +|+||..
T Consensus 174 g~~~~~~~~~~~lf~li~~r~~-~~s-~iiTsn~ 205 (259)
T PRK09183 174 GYLPFSQEEANLFFQVIAKRYE-KGS-MILTSNL 205 (259)
T ss_pred ccCCCChHHHHHHHHHHHHHHh-cCc-EEEecCC
Confidence 754333333 33333322 12 455 7888864
No 108
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.40 E-value=0.00043 Score=63.47 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=31.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCC-ceEEEEeCCCCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLP-FKVWYSVGKNLD 184 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~ 184 (355)
.-++|+|..|+|||||++.+++ .++.+|+ ..+++.+.+...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~ 111 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTR 111 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcH
Confidence 4589999999999999999998 5555564 445666766543
No 109
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.39 E-value=0.00046 Score=66.57 Aligned_cols=134 Identities=11% Similarity=0.052 Sum_probs=81.8
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH----HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ----EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~----~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
+.....+-|+|..|+|||.|++.+.+ ....+......+.++...=..+... .-.+.+++.. .-=++++||++
T Consensus 110 g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq 185 (408)
T COG0593 110 GGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQ 185 (408)
T ss_pred CCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHh
Confidence 33577899999999999999999999 5555555444444443211111111 2334455554 34588999997
Q ss_pred CCC-hhhH-HHHHHhhccCCCCCcEEEEecCCh---------hHhhhcccCCcccccCCCCChhhHHHHhhhhCC
Q 036086 214 HLN-DDNL-ANLRLLVSDMRLVGFYVLVTTHST---------SVATMMMQTVPEAEHLIYFSESNSWSNLNCELP 277 (355)
Q Consensus 214 ~~~-~~~~-~~l~~~l~~~~~~gs~IlvTTR~~---------~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 277 (355)
.-. .+.| +.+...|..-...|-.||+|++.. .+... +... -++.+.+++.+....++.+++-
T Consensus 186 ~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR-~~~G-l~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 186 FLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSR-LEWG-LVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred HhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHH-Hhce-eEEeeCCCCHHHHHHHHHHHHH
Confidence 421 1222 233333332111344799998532 33344 4454 6899999999999999888653
No 110
>PRK06526 transposase; Provisional
Probab=97.36 E-value=0.00015 Score=66.19 Aligned_cols=91 Identities=16% Similarity=0.186 Sum_probs=48.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH---------HHHHHhhcCCCCcEEEEEeCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQE---------IRNRRNEIPSSKRLLFALDDV 212 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~---------l~~~l~~~l~~kr~LlVlDdv 212 (355)
.-+.++|++|+|||+||..+.+.. ++..+. ..|++. .+++.. +...+... .+.-|||+||+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a-~~~g~~-v~f~t~------~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~ 168 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA-CQAGHR-VLFATA------AQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEV 168 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH-HHCCCc-hhhhhH------HHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEccc
Confidence 457899999999999999987632 122222 223322 222221 12222222 23468999999
Q ss_pred CCCChhhHH--HHHHhhcc-CCCCCcEEEEecCCh
Q 036086 213 SHLNDDNLA--NLRLLVSD-MRLVGFYVLVTTHST 244 (355)
Q Consensus 213 w~~~~~~~~--~l~~~l~~-~~~~gs~IlvTTR~~ 244 (355)
.....+.|. .+...+.. .. +++ +|+||...
T Consensus 169 g~~~~~~~~~~~L~~li~~r~~-~~s-~IitSn~~ 201 (254)
T PRK06526 169 GYIPFEPEAANLFFQLVSSRYE-RAS-LIVTSNKP 201 (254)
T ss_pred ccCCCCHHHHHHHHHHHHHHHh-cCC-EEEEcCCC
Confidence 743322222 23333322 22 345 88888754
No 111
>CHL00176 ftsH cell division protein; Validated
Probab=97.34 E-value=0.0041 Score=64.01 Aligned_cols=144 Identities=13% Similarity=0.213 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHH-----HHH
Q 036086 124 ESSVDSVKNALLRD-------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTA-----VQE 191 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i-----~~~ 191 (355)
..+..+++..|... ....+-+-++|++|+|||+||+.+.+.. .- -|+.++..- .... ...
T Consensus 192 k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~-----p~i~is~s~-f~~~~~g~~~~~ 263 (638)
T CHL00176 192 KEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EV-----PFFSISGSE-FVEMFVGVGAAR 263 (638)
T ss_pred HHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC-----CeeeccHHH-HHHHhhhhhHHH
Confidence 44455556555433 1224458899999999999999998743 11 233333210 0000 012
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCC----------ChhhH----HHHHHhhcc--CCCCCcEEEEecCChhHh-hhcc--c
Q 036086 192 IRNRRNEIPSSKRLLFALDDVSHL----------NDDNL----ANLRLLVSD--MRLVGFYVLVTTHSTSVA-TMMM--Q 252 (355)
Q Consensus 192 l~~~l~~~l~~kr~LlVlDdvw~~----------~~~~~----~~l~~~l~~--~~~~gs~IlvTTR~~~va-~~~~--~ 252 (355)
+...+.......+++|++|++..- ....+ ..+...+.. .+ .+-.||.||...+.. ..+. |
T Consensus 264 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~-~~ViVIaaTN~~~~LD~ALlRpG 342 (638)
T CHL00176 264 VRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN-KGVIVIAATNRVDILDAALLRPG 342 (638)
T ss_pred HHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC-CCeeEEEecCchHhhhhhhhccc
Confidence 333444455677899999999521 01122 222222221 22 355566677654322 1101 1
Q ss_pred CCcccccCCCCChhhHHHHhhhhC
Q 036086 253 TVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 253 ~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
.-+..+.+...+.++-.++|+.++
T Consensus 343 RFd~~I~v~lPd~~~R~~IL~~~l 366 (638)
T CHL00176 343 RFDRQITVSLPDREGRLDILKVHA 366 (638)
T ss_pred cCceEEEECCCCHHHHHHHHHHHH
Confidence 123567888888888888887765
No 112
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.33 E-value=0.00017 Score=68.72 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=99.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHH--------------HHHHHHhhcCCCCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-DFSTAVQ--------------EIRNRRNEIPSSKR 204 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~--------------~l~~~l~~~l~~kr 204 (355)
..+.+.++|.|||||||++-++-. +...|..-.|..-=.++ |...+.- .....+.....++|
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr 89 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRR 89 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhh
Confidence 467899999999999999988776 56677555544322222 2222111 24456777888999
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhcccCCcccccCCCCChh-hHHHHhhhhCCCCCC--
Q 036086 205 LLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQTVPEAEHLIYFSES-NSWSNLNCELPPSSQ-- 281 (355)
Q Consensus 205 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~l~~L~~~-~s~~Lf~~~af~~~~-- 281 (355)
.++|+||..+- .+.-..+.-.+-.+. ..-.|+.|+|+..... .. ..+.+.+|+.. ++-++|...+.....
T Consensus 90 ~llvldncehl-~~~~a~~i~all~~~-~~~~~~atsre~~l~~----ge-~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 90 ALLVLDNCEHL-LDACAALIVALLGAC-PRLAILATSREAILVA----GE-VHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred HHHHhcCcHHH-HHHHHHHHHHHHccc-hhhhhHHHhHhhhccc----cc-ccccCCccccCCchhHHHHHHHHHhccce
Confidence 99999995410 111122233343333 4556888888754332 23 56788888875 678888776632211
Q ss_pred -CcchHHHHHHHHHHhcCCCchHHHHHH
Q 036086 282 -EAHRVEDLETGSAMDEEGVTSLTQFLL 308 (355)
Q Consensus 282 -~~~~~~~~~~~i~~~c~GlPla~~~~~ 308 (355)
-...-.....+|-++..|.|+++....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaa 190 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAA 190 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHH
Confidence 122334566778899999999985543
No 113
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0049 Score=59.25 Aligned_cols=181 Identities=15% Similarity=0.125 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCc--eEEEEeCCCCCHHHHHH---------
Q 036086 124 ESSVDSVKNALLRD--GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPF--KVWYSVGKNLDFSTAVQ--------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~i~~--------- 190 (355)
+++.+++...|... +..+.-+-|+|..|.|||+.++.+.. +++..... .++|..-.......++.
T Consensus 23 e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~ 100 (366)
T COG1474 23 EEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNKLGKV 100 (366)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCC
Confidence 88888888877654 33333488999999999999999998 44443221 45665554444444444
Q ss_pred --------HHHHHHhhcC--CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEE--ecCChhHhhhc-------c
Q 036086 191 --------EIRNRRNEIP--SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLV--TTHSTSVATMM-------M 251 (355)
Q Consensus 191 --------~l~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Ilv--TTR~~~va~~~-------~ 251 (355)
+..+.+.+.+ .++.++||||++..-....-+.+...+......+++|++ .+-+-.+...+ +
T Consensus 101 p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l 180 (366)
T COG1474 101 PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSL 180 (366)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhcc
Confidence 3334444444 367899999999742111113333333332212354433 33333322220 3
Q ss_pred cCCcccccCCCCChhhHHHHhhhhC---CCCCCC-cchHHHHHHHHHHhcCCCchHHHHHH
Q 036086 252 QTVPEAEHLIYFSESNSWSNLNCEL---PPSSQE-AHRVEDLETGSAMDEEGVTSLTQFLL 308 (355)
Q Consensus 252 ~~~~~~~~l~~L~~~~s~~Lf~~~a---f~~~~~-~~~~~~~~~~i~~~c~GlPla~~~~~ 308 (355)
+.. .+...|-+.++-..++..++ |..... +..++.++...+...|-.-.|++.+.
T Consensus 181 ~~~--~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 181 GPS--EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred Ccc--eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 333 37788999999999888765 444433 34445555544444444445554443
No 114
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.015 Score=54.80 Aligned_cols=169 Identities=14% Similarity=0.084 Sum_probs=96.7
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc----------------CCCCceEEEEeCCC-CC---
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK----------------SRLPFKVWYSVGKN-LD--- 184 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~----------------~~F~~~~wv~vs~~-~~--- 184 (355)
...+.+...+.. +.-...+-+.|+.|+||+|+|..+...--.. +..+-..|+..... -.
T Consensus 11 ~~~~~l~~~~~~-~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~ 89 (319)
T PRK08769 11 RAYDQTVAALDA-GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccc
Confidence 344555555543 2334578899999999999997764321111 01111233421110 00
Q ss_pred ----HHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCcccc
Q 036086 185 ----FSTAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAE 258 (355)
Q Consensus 185 ----~~~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~ 258 (355)
..+..+++.+.+.. -..+++=++|+|++..-+...-+.+...+..-. .++.+|++|.+ ..+... +.+....+
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~~~fiL~~~~~~~lLpT-IrSRCq~i 167 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS-PGRYLWLISAQPARLPAT-IRSRCQRL 167 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC-CCCeEEEEECChhhCchH-HHhhheEe
Confidence 01112233333322 223566789999998666666677777776544 56666666654 444444 33333678
Q ss_pred cCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 259 HLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 259 ~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
.+.+++.++....+... +. + ..-+...+..++|.|..+
T Consensus 168 ~~~~~~~~~~~~~L~~~--~~--~----~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 168 EFKLPPAHEALAWLLAQ--GV--S----ERAAQEALDAARGHPGLA 205 (319)
T ss_pred eCCCcCHHHHHHHHHHc--CC--C----hHHHHHHHHHcCCCHHHH
Confidence 99999999998877653 11 1 122456688999999765
No 115
>PRK07261 topology modulation protein; Provisional
Probab=97.30 E-value=0.00049 Score=58.98 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=40.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCcccc-CCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVK-SRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.|.|+|++|+||||||+.+.....+. -+.|...|-......+..+ ....+.+.+.+.+ .|+|+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--wIidg~~ 67 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDD----MIADISNFLLKHD--WIIDGNY 67 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHH----HHHHHHHHHhCCC--EEEcCcc
Confidence 48899999999999999987643222 1456666643322333333 3344444555556 6788865
No 116
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.29 E-value=0.0066 Score=64.70 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCC---CCHHHHHH---
Q 036086 124 ESSVDSVKNALLRD-------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKN---LDFSTAVQ--- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~i~~--- 190 (355)
+..++.|.+.+... +.....+-++|+.|+|||+||+.+.+. +-..-...+-+..|.- ..+..+..
T Consensus 515 ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~ 592 (821)
T CHL00095 515 DEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVSKLIGSPP 592 (821)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHHHhcCCCC
Confidence 45566666655421 223456678999999999999987652 1100011122222221 11211110
Q ss_pred -----HHHHHHhhcCCCCc-EEEEEeCCCCCChhhHHHHHHhhccCC----------CCCcEEEEecCC
Q 036086 191 -----EIRNRRNEIPSSKR-LLFALDDVSHLNDDNLANLRLLVSDMR----------LVGFYVLVTTHS 243 (355)
Q Consensus 191 -----~l~~~l~~~l~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~----------~~gs~IlvTTR~ 243 (355)
.-...+.+.+..++ .+++||++...+++.++.|...+..+. ...+-||+||..
T Consensus 593 gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 593 GYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred cccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 00112233333344 588999998888888988888776541 023456667664
No 117
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.28 E-value=0.00023 Score=61.45 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=46.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH------------HHHHHHhhcCCCCcEEEE
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ------------EIRNRRNEIPSSKRLLFA 208 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~------------~l~~~l~~~l~~kr~LlV 208 (355)
..-+.++|..|+|||.||..+.+.. +...+. ..|++++ +++. ...+.+. +-=|||
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~~-v~f~~~~------~L~~~l~~~~~~~~~~~~~~~l~-----~~dlLi 113 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGYS-VLFITAS------DLLDELKQSRSDGSYEELLKRLK-----RVDLLI 113 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEHH------HHHHHHHCCHCCTTHCHHHHHHH-----TSSCEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCcc-eeEeecC------ceeccccccccccchhhhcCccc-----cccEec
Confidence 3458899999999999999998732 222332 3566543 2222 1122221 235888
Q ss_pred EeCCCCCChhhHHH--HHHhhccC-CCCCcEEEEecCCh
Q 036086 209 LDDVSHLNDDNLAN--LRLLVSDM-RLVGFYVLVTTHST 244 (355)
Q Consensus 209 lDdvw~~~~~~~~~--l~~~l~~~-~~~gs~IlvTTR~~ 244 (355)
|||+-.+....|.. +...+... . ++ .+||||...
T Consensus 114 lDDlG~~~~~~~~~~~l~~ii~~R~~-~~-~tIiTSN~~ 150 (178)
T PF01695_consen 114 LDDLGYEPLSEWEAELLFEIIDERYE-RK-PTIITSNLS 150 (178)
T ss_dssp EETCTSS---HHHHHCTHHHHHHHHH-T--EEEEEESS-
T ss_pred ccccceeeecccccccchhhhhHhhc-cc-CeEeeCCCc
Confidence 99997655555532 22222211 2 33 477788643
No 118
>PRK06921 hypothetical protein; Provisional
Probab=97.28 E-value=0.00044 Score=63.60 Aligned_cols=96 Identities=9% Similarity=0.098 Sum_probs=51.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCC-CCceEEEEeCCCCCHHHHHH---HHHHHHhhcCCCCcEEEEEeCCCC--
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSR-LPFKVWYSVGKNLDFSTAVQ---EIRNRRNEIPSSKRLLFALDDVSH-- 214 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~i~~---~l~~~l~~~l~~kr~LlVlDdvw~-- 214 (355)
..-+.++|..|+|||+||..+.+. +... -..+++++...-++ .+.. .....+. .+ .+--||||||+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~~l~~--~l~~~~~~~~~~~~-~~-~~~dlLiIDDl~~~~ 190 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFVEGFG--DLKDDFDLLEAKLN-RM-KKVEVLFIDDLFKPV 190 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHHHHHH--HHHHHHHHHHHHHH-Hh-cCCCEEEEecccccc
Confidence 456889999999999999999983 3332 23345665432111 1111 1111122 22 2356999999932
Q ss_pred ---CChhhHHH--HHHhhccC-CCCCcEEEEecCC
Q 036086 215 ---LNDDNLAN--LRLLVSDM-RLVGFYVLVTTHS 243 (355)
Q Consensus 215 ---~~~~~~~~--l~~~l~~~-~~~gs~IlvTTR~ 243 (355)
+....|.. +...+... . .+..+|+||..
T Consensus 191 ~g~e~~t~~~~~~lf~iin~R~~-~~k~tIitsn~ 224 (266)
T PRK06921 191 NGKPRATEWQIEQMYSVLNYRYL-NHKPILISSEL 224 (266)
T ss_pred CCCccCCHHHHHHHHHHHHHHHH-CCCCEEEECCC
Confidence 22334542 33333221 1 24457887763
No 119
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.019 Score=54.26 Aligned_cols=167 Identities=10% Similarity=0.079 Sum_probs=98.6
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc-----Cccc-c--------------CCCCceEEEEe--CCCC
Q 036086 126 SVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT-----DDDV-K--------------SRLPFKVWYSV--GKNL 183 (355)
Q Consensus 126 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~-----~~~~-~--------------~~F~~~~wv~v--s~~~ 183 (355)
..+.|.+.+.. +.-...+-+.|+.|+||+++|..+.. ++.- . .|=| ..++.- +...
T Consensus 10 ~~~~l~~~~~~-~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~I 87 (325)
T PRK06871 10 TYQQITQAFQQ-GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD-FHILEPIDNKDI 87 (325)
T ss_pred HHHHHHHHHHc-CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEccccCCCC
Confidence 34445555543 22346788999999999999988643 2110 0 1111 112211 1122
Q ss_pred CHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCCh-hHhhhcccCCcccccCC
Q 036086 184 DFSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHST-SVATMMMQTVPEAEHLI 261 (355)
Q Consensus 184 ~~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~l~ 261 (355)
.+..+ +++.+.+... ..+++=.+|+|++...+....+.+...+..-. .++.+|++|.+. .+... +-+....+.+.
T Consensus 88 ~id~i-R~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp-~~~~fiL~t~~~~~llpT-I~SRC~~~~~~ 164 (325)
T PRK06871 88 GVDQV-REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR-PNTYFLLQADLSAALLPT-IYSRCQTWLIH 164 (325)
T ss_pred CHHHH-HHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC-CCeEEEEEECChHhCchH-HHhhceEEeCC
Confidence 22222 2444444332 34566678899998777788888888886655 566666666553 44434 33333689999
Q ss_pred CCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 262 YFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 262 ~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
++++++..+.+.... +. +. ..+...+..++|.|..+
T Consensus 165 ~~~~~~~~~~L~~~~-~~--~~----~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 165 PPEEQQALDWLQAQS-SA--EI----SEILTALRINYGRPLLA 200 (325)
T ss_pred CCCHHHHHHHHHHHh-cc--Ch----HHHHHHHHHcCCCHHHH
Confidence 999999988887653 11 11 12345567889999543
No 120
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0025 Score=64.64 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=55.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC--CCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK--NLDFSTAVQEIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.-|-|.|..|+|||+||+.+++... +++.-+...|+.|. .-.+..+.+.+...+.+.+...+.+|||||+.
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchh
Confidence 4578999999999999999998544 44444455666553 33466777788888889999999999999985
No 121
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0048 Score=60.65 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=90.5
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH--HHHHHHhhcCCCCcEEEEEeCCCCCC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ--EIRNRRNEIPSSKRLLFALDDVSHLN 216 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~--~l~~~l~~~l~~kr~LlVlDdvw~~~ 216 (355)
..+.-+-+-|++|+|||+||..+.. .+.|+.+--++-..-..+.+-.+ .+...+...-+..--.||+||+. .
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiE--r 609 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIE--R 609 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchh--h
Confidence 3455667789999999999999886 34576544333222112222222 55556666667778899999986 3
Q ss_pred hhhH------------HHHHHhhccCCCCCcE--EEEecCChhHhhhcccCC---cccccCCCCCh-hhHHHHhhhhC-C
Q 036086 217 DDNL------------ANLRLLVSDMRLVGFY--VLVTTHSTSVATMMMQTV---PEAEHLIYFSE-SNSWSNLNCEL-P 277 (355)
Q Consensus 217 ~~~~------------~~l~~~l~~~~~~gs~--IlvTTR~~~va~~~~~~~---~~~~~l~~L~~-~~s~~Lf~~~a-f 277 (355)
.-+| ..|...|....-+|-| |+-||....|... |+-. +..|++..|+. ++..+.++..- |
T Consensus 610 LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~-m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~f 688 (744)
T KOG0741|consen 610 LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE-MGILDCFSSTIHVPNLTTGEQLLEVLEELNIF 688 (744)
T ss_pred hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH-cCHHHhhhheeecCccCchHHHHHHHHHccCC
Confidence 3333 3333333322213445 4558888888888 6632 35788888887 77777776643 3
Q ss_pred CCCCCcchHHHHHHHHHHhc
Q 036086 278 PSSQEAHRVEDLETGSAMDE 297 (355)
Q Consensus 278 ~~~~~~~~~~~~~~~i~~~c 297 (355)
. +...+.++.+...+|
T Consensus 689 s----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 689 S----DDEVRAIAEQLLSKK 704 (744)
T ss_pred C----cchhHHHHHHHhccc
Confidence 3 234556666666777
No 122
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.23 E-value=0.0038 Score=52.96 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc----Ccccc--------------CCCCceEEEEeCCC---CCHH
Q 036086 128 DSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT----DDDVK--------------SRLPFKVWYSVGKN---LDFS 186 (355)
Q Consensus 128 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~----~~~~~--------------~~F~~~~wv~vs~~---~~~~ 186 (355)
+.|.+.+.. +.-...+-+.|..|+||+|+|..+.+ ..... ....-..|+.-... ..+.
T Consensus 7 ~~L~~~~~~-~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~ 85 (162)
T PF13177_consen 7 ELLKNLIKS-GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKID 85 (162)
T ss_dssp HHHHHHHHC-TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHH
T ss_pred HHHHHHHHc-CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHH
Confidence 334444432 33345788999999999999987643 11110 12333445544433 4444
Q ss_pred HHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChh-HhhhcccCCcccccCCCCC
Q 036086 187 TAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIYFS 264 (355)
Q Consensus 187 ~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~L~ 264 (355)
.+- .+...+.. -..+++=++|+|++...+...++.|+..+..-. .++.+|++|.+.+ +... +-+....+++.+||
T Consensus 86 ~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp-~~~~fiL~t~~~~~il~T-I~SRc~~i~~~~ls 162 (162)
T PF13177_consen 86 QIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPP-ENTYFILITNNPSKILPT-IRSRCQVIRFRPLS 162 (162)
T ss_dssp HHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT-TTEEEEEEES-GGGS-HH-HHTTSEEEEE----
T ss_pred HHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCC-CCEEEEEEECChHHChHH-HHhhceEEecCCCC
Confidence 433 33333322 223466789999999878889999998887766 6788887777654 4333 33332567777664
No 123
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.23 E-value=0.0032 Score=57.77 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=47.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH--------HHHH--------------------
Q 036086 144 IHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQE--------IRNR-------------------- 195 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~--------l~~~-------------------- 195 (355)
+-+.|.+|+|||+||+.+.. .... ....++.+...+..+++.. ....
T Consensus 24 vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 98 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNR 98 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCch
Confidence 45899999999999999986 2221 2234555555554444320 0000
Q ss_pred HhhcCCCCcEEEEEeCCCCCChhhHHHHHHhhc
Q 036086 196 RNEIPSSKRLLFALDDVSHLNDDNLANLRLLVS 228 (355)
Q Consensus 196 l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~ 228 (355)
+.... .+...+++|++...+.+.+..|...+.
T Consensus 99 l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le 130 (262)
T TIGR02640 99 LTLAV-REGFTLVYDEFTRSKPETNNVLLSVFE 130 (262)
T ss_pred HHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhc
Confidence 00000 134689999998777777777766664
No 124
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.031 Score=52.67 Aligned_cols=165 Identities=11% Similarity=0.035 Sum_probs=100.4
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc-----Cccc--------------cCCCCceEEEEe---CCC
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT-----DDDV--------------KSRLPFKVWYSV---GKN 182 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~-----~~~~--------------~~~F~~~~wv~v---s~~ 182 (355)
...+++.+.+.. +.-...+-+.|+.|+||+++|..+.. ++.- ..|-| ..|+.- ++.
T Consensus 10 ~~~~~l~~~~~~-~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~ 87 (319)
T PRK06090 10 PVWQNWKAGLDA-GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKS 87 (319)
T ss_pred HHHHHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCc
Confidence 344555555543 33356788999999999999987643 2110 11222 223332 122
Q ss_pred CCHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCcccccC
Q 036086 183 LDFSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAEHL 260 (355)
Q Consensus 183 ~~~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~l 260 (355)
..+..+ +++.+.+... ..+++=.+|+|++...+....+.+...+..-. .++.+|++|.+ ..+... +-+....+.+
T Consensus 88 I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~~~lLpT-I~SRCq~~~~ 164 (319)
T PRK06090 88 ITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPA-PNCLFLLVTHNQKRLLPT-IVSRCQQWVV 164 (319)
T ss_pred CCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCC-CCeEEEEEECChhhChHH-HHhcceeEeC
Confidence 333333 2444444322 23455578899998777788888888886655 56665555554 445444 4443378999
Q ss_pred CCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 261 IYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 261 ~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
.++++++..+.+.... . + ....++..++|.|..+
T Consensus 165 ~~~~~~~~~~~L~~~~--~-~-------~~~~~l~l~~G~p~~A 198 (319)
T PRK06090 165 TPPSTAQAMQWLKGQG--I-T-------VPAYALKLNMGSPLKT 198 (319)
T ss_pred CCCCHHHHHHHHHHcC--C-c-------hHHHHHHHcCCCHHHH
Confidence 9999999988886541 1 1 1245678899999765
No 125
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.19 E-value=0.0031 Score=67.23 Aligned_cols=146 Identities=13% Similarity=0.145 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc---cccC-CCCceEE-EEeCC----CCCHHHHHHHHHH
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD---DVKS-RLPFKVW-YSVGK----NLDFSTAVQEIRN 194 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~---~~~~-~F~~~~w-v~vs~----~~~~~~i~~~l~~ 194 (355)
+.+.+++++.|... ...-+.++|.+|+||||+|..+...- .+.. ..+..+| +.++. ....-+....+..
T Consensus 193 ~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ 270 (852)
T TIGR03345 193 DDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKS 270 (852)
T ss_pred HHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHH
Confidence 77888888888754 22334599999999999999988731 1111 1234444 33321 1111111122223
Q ss_pred HHhhcC-CCCcEEEEEeCCCCCC-------hhhHH-HHHHhhccCCCCCcEEEEecCChhHhhh------cccCCccccc
Q 036086 195 RRNEIP-SSKRLLFALDDVSHLN-------DDNLA-NLRLLVSDMRLVGFYVLVTTHSTSVATM------MMQTVPEAEH 259 (355)
Q Consensus 195 ~l~~~l-~~kr~LlVlDdvw~~~-------~~~~~-~l~~~l~~~~~~gs~IlvTTR~~~va~~------~~~~~~~~~~ 259 (355)
.+.+.- .+++.+|++|++..-. ..+-. .+.+.+..+ .-++|-||..++.... ..... ..+.
T Consensus 271 ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G---~l~~IgaTT~~e~~~~~~~d~AL~rRf-~~i~ 346 (852)
T TIGR03345 271 VIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG---ELRTIAATTWAEYKKYFEKDPALTRRF-QVVK 346 (852)
T ss_pred HHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC---CeEEEEecCHHHHhhhhhccHHHHHhC-eEEE
Confidence 332221 2578999999986421 11111 234444332 2445555554332111 01122 5789
Q ss_pred CCCCChhhHHHHhhhh
Q 036086 260 LIYFSESNSWSNLNCE 275 (355)
Q Consensus 260 l~~L~~~~s~~Lf~~~ 275 (355)
+.+++.++...++...
T Consensus 347 v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 347 VEEPDEETAIRMLRGL 362 (852)
T ss_pred eCCCCHHHHHHHHHHH
Confidence 9999999999997543
No 126
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.19 E-value=0.0011 Score=60.19 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=52.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH----------HHHHhhcCCCCcEEEEEe
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEI----------RNRRNEIPSSKRLLFALD 210 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l----------~~~l~~~l~~kr~LlVlD 210 (355)
...+.++|.+|+|||+||..+.+.. ...-...++++++ +++..+ ...+.+.+. +.=+||||
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it~~------~l~~~l~~~~~~~~~~~~~~l~~l~-~~dlLvID 169 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIITVA------DIMSAMKDTFSNSETSEEQLLNDLS-NVDLLVID 169 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEHH------HHHHHHHHHHhhccccHHHHHHHhc-cCCEEEEe
Confidence 3468899999999999999999843 2222234455432 222211 112223333 45589999
Q ss_pred CCCCCChhhHHH--HHHhhccCCCCCcEEEEecCC
Q 036086 211 DVSHLNDDNLAN--LRLLVSDMRLVGFYVLVTTHS 243 (355)
Q Consensus 211 dvw~~~~~~~~~--l~~~l~~~~~~gs~IlvTTR~ 243 (355)
|+-......|.. +...+...-...-.+|+||-.
T Consensus 170 Dig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 170 EIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 998666666763 323332211012347777754
No 127
>PRK10536 hypothetical protein; Provisional
Probab=97.18 E-value=0.0049 Score=55.96 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
......++.+|.+ ..++.+.|.+|+|||+||..+..+
T Consensus 61 n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 61 NEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHH
Confidence 5556666777763 248999999999999999987664
No 128
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0021 Score=58.54 Aligned_cols=157 Identities=12% Similarity=0.087 Sum_probs=91.4
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCh
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLND 217 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~~ 217 (355)
+..+--+-++|++|.||||||.-+.+ .+...+....==.+-++- ++...+.. |+. .=.+.+|.+...+.
T Consensus 49 ~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k~tsGp~leK~g-------DlaaiLt~-Le~-~DVLFIDEIHrl~~ 117 (332)
T COG2255 49 GEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLKITSGPALEKPG-------DLAAILTN-LEE-GDVLFIDEIHRLSP 117 (332)
T ss_pred CCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeEecccccccChh-------hHHHHHhc-CCc-CCeEEEehhhhcCh
Confidence 55677789999999999999999998 343333211100111111 33333333 333 34556788875554
Q ss_pred hhHHHHHHhhcc-------CCCCCcEE-----------EEecCChhHhhhcccCC-cccccCCCCChhhHHHHhhhhCCC
Q 036086 218 DNLANLRLLVSD-------MRLVGFYV-----------LVTTHSTSVATMMMQTV-PEAEHLIYFSESNSWSNLNCELPP 278 (355)
Q Consensus 218 ~~~~~l~~~l~~-------~~~~gs~I-----------lvTTR~~~va~~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~ 278 (355)
..-+-+.++..+ +.++++|. =.|||.-.+... .... +.+.+|+.-+.+|-.++..+.|--
T Consensus 118 ~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~P-LrdRFGi~~rlefY~~~eL~~Iv~r~a~~ 196 (332)
T COG2255 118 AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNP-LRDRFGIIQRLEFYTVEELEEIVKRSAKI 196 (332)
T ss_pred hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccch-hHHhcCCeeeeecCCHHHHHHHHHHHHHH
Confidence 443444443322 22134433 348887665554 3221 246788889999999988887621
Q ss_pred CCCCcchHHHHHHHHHHhcCCCc-hHHHHHH
Q 036086 279 SSQEAHRVEDLETGSAMDEEGVT-SLTQFLL 308 (355)
Q Consensus 279 ~~~~~~~~~~~~~~i~~~c~GlP-la~~~~~ 308 (355)
- .-.--++-+.+|+++..|-| .|.+.+.
T Consensus 197 l--~i~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 197 L--GIEIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred h--CCCCChHHHHHHHHhccCCcHHHHHHHH
Confidence 1 11222466788999999999 5555554
No 129
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.16 E-value=0.0046 Score=65.02 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc---cccCCC-CceEEEEeCCCCCHHHHHH---------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD---DVKSRL-PFKVWYSVGKNLDFSTAVQ--------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~i~~--------- 190 (355)
+.+.+++++.|... ...-+.++|++|+|||++|+.+.+.- .+...+ +..+|.. +...+..
T Consensus 188 ~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~a~~~~~g~~e 260 (731)
T TIGR02639 188 EDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLLAGTKYRGDFE 260 (731)
T ss_pred HHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHhhhccccchHH
Confidence 77888888888754 22234689999999999999988732 111122 3455531 2222221
Q ss_pred -HHHHHHhhcCCCCcEEEEEeCCCCC---------ChhhHHHHHHhhccCCCCCcEEEEecCChhHhhh------cccCC
Q 036086 191 -EIRNRRNEIPSSKRLLFALDDVSHL---------NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATM------MMQTV 254 (355)
Q Consensus 191 -~l~~~l~~~l~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~------~~~~~ 254 (355)
.+...+.+.-..++.+|++|++..- +.+.-+.++..+..+. -++|-+|..++.... ....-
T Consensus 261 ~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~---i~~IgaTt~~e~~~~~~~d~al~rRf 337 (731)
T TIGR02639 261 ERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK---LRCIGSTTYEEYKNHFEKDRALSRRF 337 (731)
T ss_pred HHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC---eEEEEecCHHHHHHHhhhhHHHHHhC
Confidence 2222222222345789999998621 0112233444444322 234444433222111 01122
Q ss_pred cccccCCCCChhhHHHHhhhh
Q 036086 255 PEAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 255 ~~~~~l~~L~~~~s~~Lf~~~ 275 (355)
..+.+.+++.++...+++..
T Consensus 338 -~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 338 -QKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred -ceEEeCCCCHHHHHHHHHHH
Confidence 57899999999999998854
No 130
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.15 E-value=0.0003 Score=56.23 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 131
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.14 E-value=0.0088 Score=60.09 Aligned_cols=126 Identities=15% Similarity=0.240 Sum_probs=66.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHH-----HHHHHHHhhcCCCCcEEEEEeCCCCC-
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAV-----QEIRNRRNEIPSSKRLLFALDDVSHL- 215 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~-----~~l~~~l~~~l~~kr~LlVlDdvw~~- 215 (355)
+=+-++|++|+|||+||+.+.+.. .-+ ++.++.. +..... +.+...+.......+++|++|++..-
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~~-~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~ 160 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISGS-DFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVG 160 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccHH-HHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhh
Confidence 347789999999999999998743 222 2333321 111111 02233333333456789999998531
Q ss_pred ---------ChhhHHH----HHHhhcc--CCCCCcEEEEecCChhH-hhhcc--cCCcccccCCCCChhhHHHHhhhhC
Q 036086 216 ---------NDDNLAN----LRLLVSD--MRLVGFYVLVTTHSTSV-ATMMM--QTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 216 ---------~~~~~~~----l~~~l~~--~~~~gs~IlvTTR~~~v-a~~~~--~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
....+.. +...+.. .. .+-.||.||...+. -..+. +.-+..+.+...+.++-.++|....
T Consensus 161 ~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~-~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l 238 (495)
T TIGR01241 161 RQRGAGLGGGNDEREQTLNQLLVEMDGFGTN-TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHA 238 (495)
T ss_pred hccccCcCCccHHHHHHHHHHHhhhccccCC-CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHH
Confidence 0112222 2222211 12 34456666755431 11101 1223568888888888888887664
No 132
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.13 E-value=0.0022 Score=56.25 Aligned_cols=99 Identities=10% Similarity=0.197 Sum_probs=57.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCH-----HHHH---------HHHHHHHhhcCCCCcEEE
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDF-----STAV---------QEIRNRRNEIPSSKRLLF 207 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-----~~i~---------~~l~~~l~~~l~~kr~Ll 207 (355)
.+|.|+|+.|+||||++..+... +..+...+++.- ..+... ..+. ....+.++..+....=.+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~i 78 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVI 78 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEE
Confidence 47899999999999999976652 222222222211 000000 0000 023445566666667799
Q ss_pred EEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhhh
Q 036086 208 ALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 208 VlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
++|.+. +.+.+..+.... . .|..++.|+...+++..
T Consensus 79 i~gEir--d~e~~~~~l~~a---~-~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 79 LVGEMR--DLETIRLALTAA---E-TGHLVMSTLHTNSAAKT 114 (198)
T ss_pred EEcCCC--CHHHHHHHHHHH---H-cCCEEEEEecCCcHHHH
Confidence 999998 665555443332 2 45568888887776544
No 133
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.027 Score=53.66 Aligned_cols=92 Identities=9% Similarity=-0.009 Sum_probs=62.0
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCcccccCCCCChhhHHHHhhhhCCCC
Q 036086 201 SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPS 279 (355)
Q Consensus 201 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~ 279 (355)
.+++=++|+|++..-+...++.+...+..-. +++.+|++|.+ ..+... +-+....+.+.+++.++..+.+.... .
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~~~LLpT-I~SRcq~i~~~~~~~~~~~~~L~~~~--~ 205 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPP-PGTVFLLVSARIDRLLPT-ILSRCRQFPMTVPAPEAAAAWLAAQG--V 205 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCC-cCcEEEEEECChhhCcHH-HHhcCEEEEecCCCHHHHHHHHHHcC--C
Confidence 3556688899998878888999988887655 56655555544 545444 33333689999999999998887642 1
Q ss_pred CCCcchHHHHHHHHHHhcCCCchHH
Q 036086 280 SQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 280 ~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
. + ....+..++|.|..+
T Consensus 206 -~--~-----~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 206 -A--D-----ADALLAEAGGAPLAA 222 (342)
T ss_pred -C--h-----HHHHHHHcCCCHHHH
Confidence 1 1 112467789999644
No 134
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.12 E-value=0.0059 Score=59.40 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=77.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHH----HHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTA----VQEIRNRRNEIPSSKRLLFALDDVSHL 215 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i----~~~l~~~l~~~l~~kr~LlVlDdvw~~ 215 (355)
.++-+.++|++|+|||+||+.+.+. ...+| +.++...-.... .+.+.+.+.......+.+|++|++..-
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i 250 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSI 250 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhh
Confidence 3566889999999999999999883 33232 222111000000 001222222333457899999997521
Q ss_pred -----------Chh---hHHHHHHhhcc--CCCCCcEEEEecCChhHhhh-ccc--CCcccccCCCCChhhHHHHhhhhC
Q 036086 216 -----------NDD---NLANLRLLVSD--MRLVGFYVLVTTHSTSVATM-MMQ--TVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 216 -----------~~~---~~~~l~~~l~~--~~~~gs~IlvTTR~~~va~~-~~~--~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
+.. .+..+...+.. .. .+..||.||...+.... +.. .-+..+.+...+.++-..+|+...
T Consensus 251 ~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~-~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 251 ATKRFDAQTGADREVQRILLELLNQMDGFDQT-TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred ccccccccCCccHHHHHHHHHHHHHhhccCCC-CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 001 12222222221 12 35568888875543211 021 223568888888888777777553
Q ss_pred CCCC-CCcchHHHHHHHHHHhcCCCc
Q 036086 277 PPSS-QEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 277 f~~~-~~~~~~~~~~~~i~~~c~GlP 301 (355)
-... ....++..+ +..+.|+-
T Consensus 330 ~~~~l~~dvd~~~l----a~~t~g~s 351 (398)
T PTZ00454 330 SKMNLSEEVDLEDF----VSRPEKIS 351 (398)
T ss_pred hcCCCCcccCHHHH----HHHcCCCC
Confidence 2111 122334443 45666654
No 135
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.11 E-value=0.0042 Score=66.36 Aligned_cols=88 Identities=16% Similarity=0.104 Sum_probs=49.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCC---CCHHHHHH--------HHHHHHhhcCCC-CcEEEE
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKN---LDFSTAVQ--------EIRNRRNEIPSS-KRLLFA 208 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~i~~--------~l~~~l~~~l~~-kr~LlV 208 (355)
..++.++|+.|+|||+||+.+.+. .-..-...+.+..+.- .....+.- .-...+.+.+.. ..-+|+
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLl 675 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVIL 675 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEE
Confidence 357889999999999999998862 2111112233333321 11111110 000112222222 225999
Q ss_pred EeCCCCCChhhHHHHHHhhccC
Q 036086 209 LDDVSHLNDDNLANLRLLVSDM 230 (355)
Q Consensus 209 lDdvw~~~~~~~~~l~~~l~~~ 230 (355)
||++...+...+..+...+..+
T Consensus 676 lDEieka~~~v~~~Ll~ile~g 697 (857)
T PRK10865 676 LDEVEKAHPDVFNILLQVLDDG 697 (857)
T ss_pred EeehhhCCHHHHHHHHHHHhhC
Confidence 9999877888888888777543
No 136
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.10 E-value=0.0018 Score=64.58 Aligned_cols=134 Identities=10% Similarity=0.106 Sum_probs=73.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCC-----CCceEEEEeCCCCC-------HHHHHHHHHHHHhhc-CCCCcEEE
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSR-----LPFKVWYSVGKNLD-------FSTAVQEIRNRRNEI-PSSKRLLF 207 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~-------~~~i~~~l~~~l~~~-l~~kr~Ll 207 (355)
++-+-++|++|+|||++|+.+++. ...+ +....++.++..-- ....++.+.+..++. -.+++++|
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~II 293 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIV 293 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceE
Confidence 455889999999999999999984 3222 12334454432110 111222233333332 23578999
Q ss_pred EEeCCCCC----C---hhh-----HHHHHHhhccCCC-CCcEEEEecCChhHhhh-cc--cCCcccccCCCCChhhHHHH
Q 036086 208 ALDDVSHL----N---DDN-----LANLRLLVSDMRL-VGFYVLVTTHSTSVATM-MM--QTVPEAEHLIYFSESNSWSN 271 (355)
Q Consensus 208 VlDdvw~~----~---~~~-----~~~l~~~l~~~~~-~gs~IlvTTR~~~va~~-~~--~~~~~~~~l~~L~~~~s~~L 271 (355)
+||++..- . ... ...+...+..-.. .+..||.||...+.... +. |.-+..+.+.+.+.++..++
T Consensus 294 fIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~I 373 (512)
T TIGR03689 294 FFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADI 373 (512)
T ss_pred EEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHH
Confidence 99999631 0 111 1233333322110 23445556654433211 01 12235689999999999999
Q ss_pred hhhhC
Q 036086 272 LNCEL 276 (355)
Q Consensus 272 f~~~a 276 (355)
|.++.
T Consensus 374 l~~~l 378 (512)
T TIGR03689 374 FSKYL 378 (512)
T ss_pred HHHHh
Confidence 98874
No 137
>PTZ00202 tuzin; Provisional
Probab=97.09 E-value=0.05 Score=53.13 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH------------
Q 036086 124 ESSVDSVKNALLRD-GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ------------ 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~------------ 190 (355)
+.+...|...|.+. ....+++.|.|++|+|||||++.+..... + .+++.-+. ...++++
T Consensus 268 eaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElLr~LL~ALGV~p~~ 339 (550)
T PTZ00202 268 EAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTLRSVVKALGVPNVE 339 (550)
T ss_pred HHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHHHHHHHHcCCCCcc
Confidence 77777777777543 33456999999999999999999886332 1 13332222 4455555
Q ss_pred -------HHHHHHhhcC-C-CCcEEEEEeCCCCCChhhHHHH---HHhhccCCCCCcEEEEecCChhHhhhccc--CCcc
Q 036086 191 -------EIRNRRNEIP-S-SKRLLFALDDVSHLNDDNLANL---RLLVSDMRLVGFYVLVTTHSTSVATMMMQ--TVPE 256 (355)
Q Consensus 191 -------~l~~~l~~~l-~-~kr~LlVlDdvw~~~~~~~~~l---~~~l~~~~~~gs~IlvTTR~~~va~~~~~--~~~~ 256 (355)
.+.+.+.+.- . |++.+||+-= . +.+.+..+ ...|.+.. .=|.|++---.+.+... .- +.-.
T Consensus 340 ~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-r--eg~~l~rvyne~v~la~dr-r~ch~v~evpleslt~~-~~~lprld 414 (550)
T PTZ00202 340 ACGDLLDFISEACRRAKKMNGETPLLVLKL-R--EGSSLQRVYNEVVALACDR-RLCHVVIEVPLESLTIA-NTLLPRLD 414 (550)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-c--CCCcHHHHHHHHHHHHccc-hhheeeeeehHhhcchh-cccCccce
Confidence 3333333321 2 5666666642 2 12222222 12333333 45667765544443221 11 1114
Q ss_pred cccCCCCChhhHHHHhh
Q 036086 257 AEHLIYFSESNSWSNLN 273 (355)
Q Consensus 257 ~~~l~~L~~~~s~~Lf~ 273 (355)
.|-+.+++.+++...-.
T Consensus 415 f~~vp~fsr~qaf~y~~ 431 (550)
T PTZ00202 415 FYLVPNFSRSQAFAYTQ 431 (550)
T ss_pred eEecCCCCHHHHHHHHh
Confidence 67777788777765443
No 138
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.08 E-value=0.0029 Score=67.65 Aligned_cols=115 Identities=14% Similarity=0.205 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC---CHHHHHH---
Q 036086 124 ESSVDSVKNALLRD-------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL---DFSTAVQ--- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~---~~~~i~~--- 190 (355)
+..++.+.+.+... .....++.++|+.|+|||++|+.+... ....-...+-+..|.-. ....+.-
T Consensus 571 ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~ 648 (852)
T TIGR03346 571 DEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSVARLIGAPP 648 (852)
T ss_pred hHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchHHHhcCCCC
Confidence 45555555555432 122457889999999999999998762 11111112223333211 1111110
Q ss_pred ---------HHHHHHhhcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCC-----C-----CCcEEEEecCC
Q 036086 191 ---------EIRNRRNEIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMR-----L-----VGFYVLVTTHS 243 (355)
Q Consensus 191 ---------~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----~-----~gs~IlvTTR~ 243 (355)
.+...++. ....+|+||++...+++.++.|...+..+. + ..+-||+||..
T Consensus 649 g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 649 GYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred CccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 12222222 223589999999888899998888775441 0 22347777764
No 139
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.05 Score=51.75 Aligned_cols=168 Identities=11% Similarity=0.093 Sum_probs=99.9
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc-----Cccc---------------cCCCCceEEEEeC---C
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT-----DDDV---------------KSRLPFKVWYSVG---K 181 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~-----~~~~---------------~~~F~~~~wv~vs---~ 181 (355)
..-+++.+.+.. +.-...+-+.|+.|+||+|+|..+.. .+.- ..|=|. .++.-. .
T Consensus 9 ~~~~~l~~~~~~-~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~~~ 86 (334)
T PRK07993 9 PDYEQLVGSYQA-GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKGKS 86 (334)
T ss_pred HHHHHHHHHHHc-CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecccccc
Confidence 344556666653 33456788999999999999887532 1110 112222 233211 1
Q ss_pred CCCHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCccccc
Q 036086 182 NLDFSTAVQEIRNRRNE-IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAEH 259 (355)
Q Consensus 182 ~~~~~~i~~~l~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~ 259 (355)
...+..+- ++.+.+.. -..+++=.+|+|+...-+...-+.+...+..-. .++.+|++|.+ ..+... +-+....+.
T Consensus 87 ~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~~~lLpT-IrSRCq~~~ 163 (334)
T PRK07993 87 SLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP-ENTWFFLACREPARLLAT-LRSRCRLHY 163 (334)
T ss_pred cCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCC-CCeEEEEEECChhhChHH-HHhcccccc
Confidence 12333222 34443332 234667789999998767777888888876655 56666666554 445444 333336789
Q ss_pred CCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 260 LIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 260 l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
+.++++++....+.... + .+ ..-+..++..++|.|..+
T Consensus 164 ~~~~~~~~~~~~L~~~~-~---~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 164 LAPPPEQYALTWLSREV-T---MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred CCCCCHHHHHHHHHHcc-C---CC---HHHHHHHHHHcCCCHHHH
Confidence 99999999988776531 1 11 122556788999999543
No 140
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.07 E-value=0.00052 Score=56.39 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=49.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCccccCCCCceE-EEEeCCCCCHHHHHH--HHHHHHhh-----cCC--CCcEEEEEeCCC
Q 036086 144 IHIVGVSGTDETAIAHRVFTDDDVKSRLPFKV-WYSVGKNLDFSTAVQ--EIRNRRNE-----IPS--SKRLLFALDDVS 213 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~i~~--~l~~~l~~-----~l~--~kr~LlVlDdvw 213 (355)
|-++|..|+|||+||+.+.. .. +..+ -+.++...+..++.. .....-.+ ... .+..++|||++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin 75 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEIN 75 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCG
T ss_pred EEEECCCCCCHHHHHHHHHH--Hh----hcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcc
Confidence 56899999999999999887 33 2222 367777788877766 11100000 000 168999999998
Q ss_pred CCChhhHHHHHHhhc
Q 036086 214 HLNDDNLANLRLLVS 228 (355)
Q Consensus 214 ~~~~~~~~~l~~~l~ 228 (355)
..+...+..+...+.
T Consensus 76 ~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 76 RAPPEVLESLLSLLE 90 (139)
T ss_dssp G--HHHHHTTHHHHS
T ss_pred cCCHHHHHHHHHHHh
Confidence 666666666666654
No 141
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.05 E-value=0.027 Score=59.77 Aligned_cols=145 Identities=16% Similarity=0.227 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHhcC----CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH---------
Q 036086 124 ESSVDSVKNALLRD----GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ--------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~----~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~--------- 190 (355)
+.-++.|.+++... ....+++.++|++|+|||++|+.+.+ .....|- -++++...+..++..
T Consensus 326 ~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~~---~i~~~~~~~~~~i~g~~~~~~g~~ 400 (775)
T TIGR00763 326 KKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKFV---RFSLGGVRDEAEIRGHRRTYVGAM 400 (775)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCeE---EEeCCCcccHHHHcCCCCceeCCC
Confidence 44556666654321 22345789999999999999999987 3333331 122233223333221
Q ss_pred --HHHHHHhhcCCCCcEEEEEeCCCCCCh----hhHHHHHHhhc--------cCC------CCCcEEEEecCChh-Hhhh
Q 036086 191 --EIRNRRNEIPSSKRLLFALDDVSHLND----DNLANLRLLVS--------DMR------LVGFYVLVTTHSTS-VATM 249 (355)
Q Consensus 191 --~l~~~l~~~l~~kr~LlVlDdvw~~~~----~~~~~l~~~l~--------~~~------~~gs~IlvTTR~~~-va~~ 249 (355)
.+.+.+...- .+.-+|+||.+..... +.-..+...+. +.- ..+.-+|.||...+ +...
T Consensus 401 ~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~ 479 (775)
T TIGR00763 401 PGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRP 479 (775)
T ss_pred CchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHH
Confidence 2333333332 2334789999864321 11122322221 110 01223344544322 2222
Q ss_pred cccCCcccccCCCCChhhHHHHhhhh
Q 036086 250 MMQTVPEAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 250 ~~~~~~~~~~l~~L~~~~s~~Lf~~~ 275 (355)
+.... .++.+.+++.++-..++++.
T Consensus 480 L~~R~-~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 480 LLDRM-EVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred HhCCe-eEEecCCCCHHHHHHHHHHH
Confidence 02222 67899999998888877654
No 142
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.05 E-value=0.0021 Score=56.51 Aligned_cols=109 Identities=12% Similarity=0.180 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeC----CC--CC---HHHHHH------
Q 036086 126 SVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVG----KN--LD---FSTAVQ------ 190 (355)
Q Consensus 126 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~--~~---~~~i~~------ 190 (355)
+-...++.|. ...++.+.|++|.|||.||....-+.-..++|+..+++.-. +. |- ..+-+.
T Consensus 8 ~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~ 83 (205)
T PF02562_consen 8 EQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPI 83 (205)
T ss_dssp HHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHH
T ss_pred HHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHH
Confidence 3445566666 34588999999999999998776554445677777766321 11 11 111010
Q ss_pred -----------HHHHHHh---------hcCCCC---cEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecC
Q 036086 191 -----------EIRNRRN---------EIPSSK---RLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTH 242 (355)
Q Consensus 191 -----------~l~~~l~---------~~l~~k---r~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR 242 (355)
.+...+. .+++|+ ..+||+|...+.+..++..+ +...+ .|||||++--
T Consensus 84 ~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g-~~skii~~GD 154 (205)
T PF02562_consen 84 YDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIG-EGSKIIITGD 154 (205)
T ss_dssp HHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB--TT-EEEEEE-
T ss_pred HHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccC-CCcEEEEecC
Confidence 1111111 133443 46999999987777776666 44444 7899998643
No 143
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.04 E-value=0.0011 Score=62.11 Aligned_cols=95 Identities=9% Similarity=0.150 Sum_probs=55.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH------HHHHHHhhcCCCCcEEEEEeCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ------EIRNRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~------~l~~~l~~~l~~kr~LlVlDdvw~ 214 (355)
.+-+-++|..|+|||.||..+.+... +..+. ..+++++. +..-++ .+...+.. + .+-=||||||+-.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~~~---l~~~lk~~~~~~~~~~~l~~-l-~~~dlLiIDDiG~ 228 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHFPE---FIRELKNSISDGSVKEKIDA-V-KEAPVLMLDDIGA 228 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEHHH---HHHHHHHHHhcCcHHHHHHH-h-cCCCEEEEecCCC
Confidence 45688999999999999999998432 22333 45665541 111111 11122222 2 2456899999987
Q ss_pred CChhhHHH--HHHhh-ccC-CCCCcEEEEecCC
Q 036086 215 LNDDNLAN--LRLLV-SDM-RLVGFYVLVTTHS 243 (355)
Q Consensus 215 ~~~~~~~~--l~~~l-~~~-~~~gs~IlvTTR~ 243 (355)
+....|.. +...+ ... . .+-.+|+||-.
T Consensus 229 e~~s~~~~~~ll~~Il~~R~~-~~~~ti~TSNl 260 (306)
T PRK08939 229 EQMSSWVRDEVLGVILQYRMQ-EELPTFFTSNF 260 (306)
T ss_pred ccccHHHHHHHHHHHHHHHHH-CCCeEEEECCC
Confidence 66777853 44333 321 2 34457777753
No 144
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.03 E-value=0.0038 Score=56.04 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=35.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCC----CCceEEEEeCCCCCHHHHH
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSR----LPFKVWYSVGKNLDFSTAV 189 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~ 189 (355)
.-.++.|+|.+|+|||+|+.++.-....... -...+|++....++...+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 3468999999999999999998643222221 3577899888877765543
No 145
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.01 E-value=0.0043 Score=66.07 Aligned_cols=140 Identities=18% Similarity=0.139 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc---cccCCC-CceEEEEeCCCCCHHHHHH---------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD---DVKSRL-PFKVWYSVGKNLDFSTAVQ--------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~i~~--------- 190 (355)
+.+.++++++|.... ..-+.++|++|+|||++|..+...- .+.... +..+|.- +...++.
T Consensus 185 ~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~ag~~~~ge~e 257 (821)
T CHL00095 185 EKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLLAGTKYRGEFE 257 (821)
T ss_pred HHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHhccCCCccHHH
Confidence 888999999988642 2234599999999999999887631 111111 3455531 2222221
Q ss_pred -HHHHHHhhcCCCCcEEEEEeCCCCC--------ChhhHHHHHHhhccCCCCCcEEEEecCChhHhhh------cccCCc
Q 036086 191 -EIRNRRNEIPSSKRLLFALDDVSHL--------NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATM------MMQTVP 255 (355)
Q Consensus 191 -~l~~~l~~~l~~kr~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~------~~~~~~ 255 (355)
.+...+.+.-..++.+|++|++..- +.+.-+.|...+..+. -++|.+|........ +....
T Consensus 258 ~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~---l~~IgaTt~~ey~~~ie~D~aL~rRf- 333 (821)
T CHL00095 258 ERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE---LQCIGATTLDEYRKHIEKDPALERRF- 333 (821)
T ss_pred HHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC---cEEEEeCCHHHHHHHHhcCHHHHhcc-
Confidence 2222222222356899999998520 1111222334444322 345555544433211 01122
Q ss_pred ccccCCCCChhhHHHHhhh
Q 036086 256 EAEHLIYFSESNSWSNLNC 274 (355)
Q Consensus 256 ~~~~l~~L~~~~s~~Lf~~ 274 (355)
..+.+...+.++...++..
T Consensus 334 ~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 334 QPVYVGEPSVEETIEILFG 352 (821)
T ss_pred eEEecCCCCHHHHHHHHHH
Confidence 4677888888887777653
No 146
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.99 E-value=0.0035 Score=66.11 Aligned_cols=146 Identities=16% Similarity=0.252 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHhcC----CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH---------
Q 036086 124 ESSVDSVKNALLRD----GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ--------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~----~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~--------- 190 (355)
+.-+++|+.+|... .....++.++|++|+||||+|+.+.. .....| .-++.+...+...+..
T Consensus 328 ~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~~~~~g~~ 402 (784)
T PRK10787 328 ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHRRTYIGSM 402 (784)
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccchhccCCCC
Confidence 67777788777632 23345799999999999999999887 333233 1233344334433321
Q ss_pred --HHHHHHhhcCCCCcEEEEEeCCCCCChh----hHHHHHHhhccCC--------------CCCcEEEEecCChhHhhhc
Q 036086 191 --EIRNRRNEIPSSKRLLFALDDVSHLNDD----NLANLRLLVSDMR--------------LVGFYVLVTTHSTSVATMM 250 (355)
Q Consensus 191 --~l~~~l~~~l~~kr~LlVlDdvw~~~~~----~~~~l~~~l~~~~--------------~~gs~IlvTTR~~~va~~~ 250 (355)
.+.+.+... ....-+++||.+.....+ ....+...+.... ....-+|.||.+..+....
T Consensus 403 ~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aL 481 (784)
T PRK10787 403 PGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPL 481 (784)
T ss_pred CcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHH
Confidence 233334332 223447889999643221 1334444443210 0122344466544443331
Q ss_pred ccCCcccccCCCCChhhHHHHhhhhC
Q 036086 251 MQTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 251 ~~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
.+.. .++.+.++++++-.++.+++.
T Consensus 482 l~R~-~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 482 LDRM-EVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred hcce-eeeecCCCCHHHHHHHHHHhh
Confidence 2222 688999999999888876655
No 147
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.99 E-value=0.0098 Score=63.43 Aligned_cols=104 Identities=16% Similarity=0.107 Sum_probs=59.5
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHHhhccCC---CCCcEEEE--ecCCh-hHhhhcccCCcccccCCCCChhhHHHHhhh
Q 036086 201 SSKRLLFALDDVSHLNDDNLANLRLLVSDMR---LVGFYVLV--TTHST-SVATMMMQTVPEAEHLIYFSESNSWSNLNC 274 (355)
Q Consensus 201 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~---~~gs~Ilv--TTR~~-~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~ 274 (355)
+.++..+|+||+.-.+....+-|........ ..-..|.. |.+.. ..... -.+....+.|.||+..+...+...
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~-~~~~i~~I~L~PL~~~d~~~lV~~ 230 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILK-SATNITTITLAPLSRADTNQLVAA 230 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhh-cCCceeEEecCcCchhhHHHHHHH
Confidence 3569999999995444444444332221110 00112333 33322 11111 122226799999999999999877
Q ss_pred hCCCCCCCcchHHHHHHHHHHhcCCCchHHHHHH
Q 036086 275 ELPPSSQEAHRVEDLETGSAMDEEGVTSLTQFLL 308 (355)
Q Consensus 275 ~af~~~~~~~~~~~~~~~i~~~c~GlPla~~~~~ 308 (355)
.. +.. ..........|.+|-.|.|+=+...-
T Consensus 231 ~l-~~~--~~~~~p~~~~i~~kt~GnPfFi~e~l 261 (849)
T COG3899 231 TL-GCT--KLLPAPLLELIFEKTKGNPFFIEEFL 261 (849)
T ss_pred Hh-CCc--ccccchHHHHHHHHhcCCCccHHHHH
Confidence 64 332 22334667778899999997774443
No 148
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.98 E-value=0.0011 Score=62.80 Aligned_cols=94 Identities=12% Similarity=0.145 Sum_probs=51.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH--------HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ--------EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~--------~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.-+.++|..|+|||.||..+.+.. +...+ .+++++++.- ...++ .....+ +.+. .-=||||||+-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l-~~~g~-~V~y~t~~~l---~~~l~~~~~~~~~~~~~~~-~~l~-~~DLLIIDDlG 256 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL-LDRGK-SVIYRTADEL---IEILREIRFNNDKELEEVY-DLLI-NCDLLIIDDLG 256 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH-HHCCC-eEEEEEHHHH---HHHHHHHHhccchhHHHHH-HHhc-cCCEEEEeccC
Confidence 568999999999999999998843 22222 3456654331 11111 011011 1122 23589999996
Q ss_pred CCChhhHH--HHHHhhccC-CCCCcEEEEecCC
Q 036086 214 HLNDDNLA--NLRLLVSDM-RLVGFYVLVTTHS 243 (355)
Q Consensus 214 ~~~~~~~~--~l~~~l~~~-~~~gs~IlvTTR~ 243 (355)
.+....|. .+...+... . .+-.+||||..
T Consensus 257 ~e~~t~~~~~~Lf~iin~R~~-~~k~tIiTSNl 288 (329)
T PRK06835 257 TEKITEFSKSELFNLINKRLL-RQKKMIISTNL 288 (329)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCCEEEECCC
Confidence 54444442 333333321 2 34458888864
No 149
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.97 E-value=0.0039 Score=51.85 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=27.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD 184 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 184 (355)
++.|+|.+|+||||++..+.... ...-...+|++....+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36799999999999999987632 22234456666655443
No 150
>PRK06696 uridine kinase; Validated
Probab=96.96 E-value=0.0011 Score=59.35 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 126 SVDSVKNALLRD-GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 126 ~~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-.++|.+.+... .+...+|+|.|.+|+||||||+.+..
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 345666666643 55688999999999999999999887
No 151
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.96 E-value=0.003 Score=49.62 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=17.8
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 036086 144 IHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~ 163 (355)
|-|+|.+|+|||+||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999876
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.046 Score=51.51 Aligned_cols=170 Identities=11% Similarity=0.065 Sum_probs=96.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc-------------cCCCCceEEEEeC-----CCCCH---
Q 036086 127 VDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV-------------KSRLPFKVWYSVG-----KNLDF--- 185 (355)
Q Consensus 127 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~vs-----~~~~~--- 185 (355)
++.+.+.+.. +.-.+..-++|+.|+||+++|..+.+.--. ....+-..|+.-. +..+.
T Consensus 13 ~~~L~~~i~~-~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~ 91 (314)
T PRK07399 13 IELLTAAIKQ-NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEA 91 (314)
T ss_pred HHHHHHHHHh-CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhh
Confidence 3344444432 223478999999999999988765432100 1122233444311 10000
Q ss_pred --------------HHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhc
Q 036086 186 --------------STAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMM 250 (355)
Q Consensus 186 --------------~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~ 250 (355)
.+-.+++.+.+... ..+++-++|+|++...+....+.|+..+..-. +..-|++|+..+.+...
T Consensus 92 ~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~T- 169 (314)
T PRK07399 92 EEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPT- 169 (314)
T ss_pred hhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHH-
Confidence 01112333333322 34667789999998767777888887775433 34445555555555444
Q ss_pred ccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 251 MQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 251 ~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
+.+....+++.++++++..+.+.+..... ... .....++..++|-|..+
T Consensus 170 I~SRcq~i~f~~l~~~~~~~~L~~~~~~~-~~~----~~~~~l~~~a~Gs~~~a 218 (314)
T PRK07399 170 IVSRCQIIPFYRLSDEQLEQVLKRLGDEE-ILN----INFPELLALAQGSPGAA 218 (314)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHhhccc-cch----hHHHHHHHHcCCCHHHH
Confidence 33333789999999999999998763211 111 11246778899999544
No 153
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.94 E-value=0.0072 Score=63.40 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc---cccCC-CCceEEEEeCCCCCHHHHHH---------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD---DVKSR-LPFKVWYSVGKNLDFSTAVQ--------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~---~~~~~-F~~~~wv~vs~~~~~~~i~~--------- 190 (355)
+.+.+++++.|.... ..-+-++|.+|+|||++|+.+...- .+... .++.+|.. +...++.
T Consensus 192 ~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~llaG~~~~Ge~e 264 (758)
T PRK11034 192 EKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLLAGTKYRGDFE 264 (758)
T ss_pred CHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHhcccchhhhHH
Confidence 888899998887642 1223579999999999999988621 11111 24555532 1122111
Q ss_pred -HHHHHHhhcCCCCcEEEEEeCCCCC--------ChhhHHHHHHhhccCCCCCcEEEEecCChhHhhh------cccCCc
Q 036086 191 -EIRNRRNEIPSSKRLLFALDDVSHL--------NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATM------MMQTVP 255 (355)
Q Consensus 191 -~l~~~l~~~l~~kr~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~------~~~~~~ 255 (355)
.+...+...-+.+..+|++|++..- ...+...+..++-..+ .-+||-+|...+.... +..--
T Consensus 265 ~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g--~i~vIgATt~~E~~~~~~~D~AL~rRF- 341 (758)
T PRK11034 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--KIRVIGSTTYQEFSNIFEKDRALARRF- 341 (758)
T ss_pred HHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--CeEEEecCChHHHHHHhhccHHHHhhC-
Confidence 1111111111345679999999631 1223333333333222 2345555544433211 01122
Q ss_pred ccccCCCCChhhHHHHhhhh
Q 036086 256 EAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 256 ~~~~l~~L~~~~s~~Lf~~~ 275 (355)
+.+.+.+++.++...++...
T Consensus 342 q~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 342 QKIDITEPSIEETVQIINGL 361 (758)
T ss_pred cEEEeCCCCHHHHHHHHHHH
Confidence 46889999999999888754
No 154
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.94 E-value=0.0027 Score=55.94 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=34.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 190 (355)
.-.++-|+|.+|+|||+++.++... ....-...+|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 3478999999999999999987753 223345678888865 66555444
No 155
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.92 E-value=0.0048 Score=53.09 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=35.3
Q ss_pred HHhhcCCCCcEEEEEeCCC-CC-ChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhcccC
Q 036086 195 RRNEIPSSKRLLFALDDVS-HL-NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQT 253 (355)
Q Consensus 195 ~l~~~l~~kr~LlVlDdvw-~~-~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~ 253 (355)
.+...+-+++-+++-|.=- +- ....|+-+...-.-+. .|+.||++|.+.++... +..
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv~~-~~~ 205 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELVNR-MRH 205 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHHHh-ccC
Confidence 3455556677788887521 11 3345654433222344 79999999999988776 543
No 156
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.91 E-value=0.0021 Score=56.30 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-------HHHHHHhhcC
Q 036086 128 DSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-------EIRNRRNEIP 200 (355)
Q Consensus 128 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-------~l~~~l~~~l 200 (355)
.+.+..++.. +-++..|.|.+|.||||++..+... .... ...+.+.....-....+.+ .+...+....
T Consensus 7 ~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~ 81 (196)
T PF13604_consen 7 REAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIP 81 (196)
T ss_dssp HHHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEEC
T ss_pred HHHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCC
Confidence 3344444432 3356778999999999999988762 2222 2334333333222222222 1122222211
Q ss_pred ---------CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEE
Q 036086 201 ---------SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLV 239 (355)
Q Consensus 201 ---------~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Ilv 239 (355)
..+.-+||+|+...-+...+..+....+. .|+|+|+
T Consensus 82 ~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~---~~~klil 126 (196)
T PF13604_consen 82 NGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK---SGAKLIL 126 (196)
T ss_dssp CEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T----T-EEEE
T ss_pred cccccccccCCcccEEEEecccccCHHHHHHHHHHHHh---cCCEEEE
Confidence 12346999999986666777777666554 3678775
No 157
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.91 E-value=0.005 Score=65.65 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC---CCCHHHHHH---
Q 036086 124 ESSVDSVKNALLRD-------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK---NLDFSTAVQ--- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~i~~--- 190 (355)
+..++.+.+.+... +....++.++|+.|+|||.||+.+... +-+.....+=+.+|. ..++..+..
T Consensus 572 ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~~~~~l~g~~~ 649 (852)
T TIGR03345 572 DHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAHTVSRLKGSPP 649 (852)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhhhhccccCCCC
Confidence 55666666666421 234568899999999999999877542 211111111122221 111111110
Q ss_pred ---------HHHHHHhhcCCCCcEEEEEeCCCCCChhhHHHHHHhhccC
Q 036086 191 ---------EIRNRRNEIPSSKRLLFALDDVSHLNDDNLANLRLLVSDM 230 (355)
Q Consensus 191 ---------~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~ 230 (355)
.+...++. ....+|+||++...+++.++.+...+..+
T Consensus 650 gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g 695 (852)
T TIGR03345 650 GYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKG 695 (852)
T ss_pred CcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcc
Confidence 22333332 34579999999877888888887776544
No 158
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.87 E-value=0.0074 Score=59.33 Aligned_cols=131 Identities=10% Similarity=0.117 Sum_probs=69.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCC--
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDF--STAVQEIRNRRNEIPSSKRLLFALDDVSHL-- 215 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~-- 215 (355)
...-+.++|++|+|||+||+.+.+ .....| +.+..+.-++. ....+.+...+.....+.+.+|+||++..-
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~--el~~~f---i~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~ 290 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT 290 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--hhCCCE---EEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc
Confidence 345677999999999999999998 344343 12221111000 000001222222223456889999997420
Q ss_pred ------C---hh---hHHHHHHhhcc--CCCCCcEEEEecCChhHhhh-cc--cCCcccccCCCCChhhHHHHhhhhC
Q 036086 216 ------N---DD---NLANLRLLVSD--MRLVGFYVLVTTHSTSVATM-MM--QTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 216 ------~---~~---~~~~l~~~l~~--~~~~gs~IlvTTR~~~va~~-~~--~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
+ .. .+..+...+.. .. .+-.||.||...+.... +. |..+..+.+.+.+.++-.++|..+.
T Consensus 291 kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~-~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 291 KRYDATSGGEKEIQRTMLELLNQLDGFDSR-GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHhhhccc-CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 0 00 11122222211 12 35678888875543322 01 1223578899999998899998764
No 159
>PRK04132 replication factor C small subunit; Provisional
Probab=96.86 E-value=0.031 Score=59.07 Aligned_cols=154 Identities=10% Similarity=-0.005 Sum_probs=93.3
Q ss_pred CCCccHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHHHhh--cCC-CCcEEEEEeCCCCCChhhHHHHH
Q 036086 149 VSGTDETAIAHRVFTDDDVKSRLP-FKVWYSVGKNLDFSTAVQEIRNRRNE--IPS-SKRLLFALDDVSHLNDDNLANLR 224 (355)
Q Consensus 149 ~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~l~~~l~~--~l~-~kr~LlVlDdvw~~~~~~~~~l~ 224 (355)
|.++||||+|..+.++- ..+.++ ..+-++.|+......+- ++...... .+. .+.-++|+|++..-+.+..+.|+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALL 651 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINVIR-EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALR 651 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHH
Confidence 78899999999998842 111221 23456666554444333 33222221 122 24579999999977777888887
Q ss_pred HhhccCCCCCcEEEE-ecCChhHhhhcccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc-h
Q 036086 225 LLVSDMRLVGFYVLV-TTHSTSVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT-S 302 (355)
Q Consensus 225 ~~l~~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP-l 302 (355)
..+..-. ..+++|+ |+....+... ..+....+++.+++.++-...+...+-...- . -.++....|+..|+|-+ .
T Consensus 652 k~lEep~-~~~~FILi~N~~~kIi~t-IrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~-i~~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 652 RTMEMFS-SNVRFILSCNYSSKIIEP-IQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-E-LTEEGLQAILYIAEGDMRR 727 (846)
T ss_pred HHhhCCC-CCeEEEEEeCChhhCchH-HhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-C-CCHHHHHHHHHHcCCCHHH
Confidence 7776433 3455554 5554555444 4444368999999998888777654321111 1 11346677889999977 4
Q ss_pred HHHHHH
Q 036086 303 LTQFLL 308 (355)
Q Consensus 303 a~~~~~ 308 (355)
|+..+.
T Consensus 728 AIn~Lq 733 (846)
T PRK04132 728 AINILQ 733 (846)
T ss_pred HHHHHH
Confidence 455544
No 160
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.86 E-value=0.0033 Score=56.15 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=33.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHH
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTA 188 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 188 (355)
.-.++.|+|.+|+|||+||.++... ....-...+|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 3468999999999999999998763 22233566788876 5554443
No 161
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.85 E-value=0.022 Score=58.46 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHhcC---CCCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 124 ESSVDSVKNALLRD---GNTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 124 ~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
+..++++..||... .....++.++|+.|+||||+++.+...
T Consensus 90 ~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 90 KKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 55666777777654 223457999999999999999999873
No 162
>PRK07667 uridine kinase; Provisional
Probab=96.83 E-value=0.0016 Score=56.95 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 127 VDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 127 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+.|.+.+....+...+|+|-|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567766665556668999999999999999999887
No 163
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.83 E-value=0.015 Score=49.20 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=57.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEE---eCCCCCHHHHHH-------------HHHHHHhhcCCCCcE
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYS---VGKNLDFSTAVQ-------------EIRNRRNEIPSSKRL 205 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~i~~-------------~l~~~l~~~l~~kr~ 205 (355)
.+++|+|..|.|||||.+.+..-. ......+++. +.. .+.....+ ...-.+...+-.++-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSF-ASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCc-CCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 478999999999999999998632 2233444432 111 11111111 112224444556778
Q ss_pred EEEEeCCCCC-ChhhHHHHHHhhccC-CCCCcEEEEecCChhHhh
Q 036086 206 LFALDDVSHL-NDDNLANLRLLVSDM-RLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 206 LlVlDdvw~~-~~~~~~~l~~~l~~~-~~~gs~IlvTTR~~~va~ 248 (355)
+++||+--.. +......+...+..- . .|..||++|++...+.
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~ 146 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLDEVF 146 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHH
Confidence 8999997532 344444444444322 2 4667888888876443
No 164
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.81 E-value=0.004 Score=59.54 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccC-CCCce-EEEEeCCCC-CHHHHHH-----------
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKS-RLPFK-VWYSVGKNL-DFSTAVQ----------- 190 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~-~F~~~-~wv~vs~~~-~~~~i~~----------- 190 (355)
.-..++++.+..-. .-.-+.|+|..|+|||||++.+.+ .+.. +=+.. +|+.+.+.. ++.++++
T Consensus 118 ~~~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~ 194 (380)
T PRK12608 118 DLSMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTF 194 (380)
T ss_pred chhHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecC
Confidence 34455777666432 223458999999999999999877 3322 22343 576666533 3344443
Q ss_pred ---------------HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 ---------------EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 ---------------~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
...+.+.+ ++++.+||+|++-
T Consensus 195 de~~~~~~~v~~~~~~~Ae~f~~--~GkdVVLvlDslt 230 (380)
T PRK12608 195 DRPPDEHIRVAELVLERAKRLVE--QGKDVVILLDSLT 230 (380)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH--cCCCEEEEEeCcH
Confidence 22333333 5899999999984
No 165
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.80 E-value=0.0085 Score=53.37 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||...+..
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998874
No 166
>PRK13695 putative NTPase; Provisional
Probab=96.80 E-value=0.0027 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.|.|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 167
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.73 E-value=0.0085 Score=53.40 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=34.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCC------CceEEEEeCCCCCHHHHH
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRL------PFKVWYSVGKNLDFSTAV 189 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~i~ 189 (355)
.-.++.|+|.+|+|||+|+.++.... ...- ...+|++....++...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH
Confidence 34689999999999999999886522 1122 345788887777765554
No 168
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.026 Score=53.46 Aligned_cols=133 Identities=13% Similarity=0.026 Sum_probs=75.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCcc-----c----------------cCCCCceEEEEeCC----------CCCHHH
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDD-----V----------------KSRLPFKVWYSVGK----------NLDFST 187 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~-----~----------------~~~F~~~~wv~vs~----------~~~~~~ 187 (355)
.-...+-++|+.|+||||+|..+...-. . ..|-| ..++.-.. ...+..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD-~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD-FYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEEecccccccccccCCCcCHHH
Confidence 3355788999999999999988754211 0 01112 12232111 122222
Q ss_pred HHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChh-HhhhcccCCcccccCCCCCh
Q 036086 188 AVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIYFSE 265 (355)
Q Consensus 188 i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~L~~ 265 (355)
.+++.+.+... ..+++=++|+|++..-+...-+.+...+..-. .++.+|++|.+.+ +... +.+....+.+.+++.
T Consensus 98 -iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll~t-i~SRc~~~~~~~~~~ 174 (325)
T PRK08699 98 -VREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVLPT-IKSRCRKMVLPAPSH 174 (325)
T ss_pred -HHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhChHH-HHHHhhhhcCCCCCH
Confidence 22444444332 12344445568887656666666766665544 4565677776644 4433 333336899999999
Q ss_pred hhHHHHhhhh
Q 036086 266 SNSWSNLNCE 275 (355)
Q Consensus 266 ~~s~~Lf~~~ 275 (355)
++..+.+...
T Consensus 175 ~~~~~~L~~~ 184 (325)
T PRK08699 175 EEALAYLRER 184 (325)
T ss_pred HHHHHHHHhc
Confidence 9988777654
No 169
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.70 E-value=0.21 Score=49.12 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+++.++|++|+||||++..+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999998887755
No 170
>PRK04296 thymidine kinase; Provisional
Probab=96.69 E-value=0.0062 Score=53.06 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=51.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEE--eCCCCCHHHHH---------------HHHHHHHhhcCCCCc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYS--VGKNLDFSTAV---------------QEIRNRRNEIPSSKR 204 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--vs~~~~~~~i~---------------~~l~~~l~~~l~~kr 204 (355)
.++.|+|..|.||||++...... ...+-...+.+. ....+....+. .++...+.+ ..++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCC
Confidence 46788999999999999887652 212211111121 00000000000 133333333 23445
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChh
Q 036086 205 LLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTS 245 (355)
Q Consensus 205 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~ 245 (355)
-+||+|.+.--+.++...+...+. . .|..||+|.++.+
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l~--~-~g~~vi~tgl~~~ 117 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVLD--D-LGIPVICYGLDTD 117 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHHH--H-cCCeEEEEecCcc
Confidence 689999986433333333433332 2 5778999988754
No 171
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.67 E-value=0.025 Score=53.07 Aligned_cols=139 Identities=13% Similarity=0.117 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccC-------------------CCCceEEEEeCCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKS-------------------RLPFKVWYSVGKNLD 184 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~ 184 (355)
+....++..+......-...+-+.|+.|+||||+|..+.+.-.-.. ..+-...+.-|....
T Consensus 7 ~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~ 86 (325)
T COG0470 7 QEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRK 86 (325)
T ss_pred hhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCC
Confidence 3455666666664333344588999999999999998876321111 112334555555444
Q ss_pred ---HHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecC-ChhHhhhcccCCccccc
Q 036086 185 ---FSTAVQEIRNRRNEIP-SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTH-STSVATMMMQTVPEAEH 259 (355)
Q Consensus 185 ---~~~i~~~l~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR-~~~va~~~~~~~~~~~~ 259 (355)
..+..+.+.......- .++.-++++|++...+.+.-+.+...+..-. ..+.+|++|. ...+... +.+....++
T Consensus 87 ~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~-~~~~~il~~n~~~~il~t-I~SRc~~i~ 164 (325)
T COG0470 87 IDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPP-KNTRFILITNDPSKILPT-IRSRCQRIR 164 (325)
T ss_pred CcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCC-CCeEEEEEcCChhhccch-hhhcceeee
Confidence 2333333333333222 3677899999998655655666666665555 5677777776 3334443 333335667
Q ss_pred CCCCC
Q 036086 260 LIYFS 264 (355)
Q Consensus 260 l~~L~ 264 (355)
+.+.+
T Consensus 165 f~~~~ 169 (325)
T COG0470 165 FKPPS 169 (325)
T ss_pred cCCch
Confidence 76633
No 172
>PTZ00301 uridine kinase; Provisional
Probab=96.62 E-value=0.0023 Score=56.71 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998865
No 173
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.60 E-value=0.015 Score=50.00 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=56.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCcccc-CC--CC------------ceEEEEeCCCCCH--HHHHH----------HHHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVK-SR--LP------------FKVWYSVGKNLDF--STAVQ----------EIRN 194 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~-~~--F~------------~~~wv~vs~~~~~--~~i~~----------~l~~ 194 (355)
.+++|+|..|+|||||++.+..-.... .. |+ ..+.+ +.+.+.. ..+.. ...-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~-~~q~~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV-LNQRPYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE-EccCCeeecccHHHhhcccCCHHHHHHH
Confidence 478999999999999999997632110 00 11 11111 1222111 01111 1122
Q ss_pred HHhhcCCCCcEEEEEeCCCCC-ChhhHHHHHHhhccCCCCCcEEEEecCChhHhh
Q 036086 195 RRNEIPSSKRLLFALDDVSHL-NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 195 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~ 248 (355)
.+...+-.++=+++||..... +....+.+...+..-. +|..||++|++.....
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~ 161 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH
Confidence 234445567788999997632 3333344444443333 4667888888877654
No 174
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.014 Score=49.80 Aligned_cols=106 Identities=12% Similarity=0.184 Sum_probs=58.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccc-cC--------------CCCceEEEEeCCCC------CHHHHHH-----HHHHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDV-KS--------------RLPFKVWYSVGKNL------DFSTAVQ-----EIRNR 195 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~-~~--------------~F~~~~wv~vs~~~------~~~~i~~-----~l~~~ 195 (355)
.+++|+|..|.|||||.+.+...... .. .+...+.+ +.+.+ .+.+.+. ...-.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~-~~q~~~~~~~~tv~~~~~LS~G~~qrv~ 105 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY-LPEEPSLYENLTVRENLKLSGGMKQRLA 105 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE-EecCCccccCCcHHHHhhcCHHHHHHHH
Confidence 47999999999999999999763210 00 00011111 12211 2222111 12223
Q ss_pred HhhcCCCCcEEEEEeCCCCC-ChhhHHHHHHhhccC-CCCCcEEEEecCChhHhhh
Q 036086 196 RNEIPSSKRLLFALDDVSHL-NDDNLANLRLLVSDM-RLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 196 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~~gs~IlvTTR~~~va~~ 249 (355)
+...+..++=++++|+--.. +......+...+..- . .|..||++|++...+..
T Consensus 106 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~th~~~~~~~ 160 (173)
T cd03230 106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHH
Confidence 45555667889999997532 333334444444332 2 46679999988776553
No 175
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.58 E-value=0.0053 Score=56.11 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=35.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccC---CC-CceEEEEeCCCCCHHHHHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKS---RL-PFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~---~F-~~~~wv~vs~~~~~~~i~~ 190 (355)
.+.=|+|.+|+|||.|+.++.-...+.. .. ...+|++-...|+...+.+
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~ 91 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ 91 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH
Confidence 4889999999999999988764332221 12 3467999888899887765
No 176
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.056 Score=55.25 Aligned_cols=84 Identities=18% Similarity=0.299 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhcC----CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH---------
Q 036086 124 ESSVDSVKNALLRD----GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ--------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~----~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~--------- 190 (355)
++-+++|++++--. +-+-+++..+|++|+|||.+|+.|.. .....| +-++|+.-.|+.+|--
T Consensus 417 ~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGHRRTYVGAM 491 (906)
T KOG2004|consen 417 EDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGHRRTYVGAM 491 (906)
T ss_pred HHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcccceeeeccC
Confidence 66677777776422 45567999999999999999999987 444444 2356777777777654
Q ss_pred --HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 --EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 --~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.|+.. +...=|+.||.|.
T Consensus 492 PGkiIq~LK~v-~t~NPliLiDEvD 515 (906)
T KOG2004|consen 492 PGKIIQCLKKV-KTENPLILIDEVD 515 (906)
T ss_pred ChHHHHHHHhh-CCCCceEEeehhh
Confidence 555555544 4456688899986
No 177
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.0036 Score=57.13 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=43.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHH---------HhhcCCCCcEEEEEe
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNR---------RNEIPSSKRLLFALD 210 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~---------l~~~l~~kr~LlVlD 210 (355)
+..-+.++|.+|+|||.||..+.+..- +..+. +.+++++ +++..+... +.+.+ .+-=|||||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~~~~------el~~~Lk~~~~~~~~~~~l~~~l-~~~dlLIiD 174 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFITAP------DLLSKLKAAFDEGRLEEKLLREL-KKVDLLIID 174 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEEEHH------HHHHHHHHHHhcCchHHHHHHHh-hcCCEEEEe
Confidence 345578999999999999999998543 32232 3355433 333322222 22111 133599999
Q ss_pred CCCCCChhhHH
Q 036086 211 DVSHLNDDNLA 221 (355)
Q Consensus 211 dvw~~~~~~~~ 221 (355)
|+-......|.
T Consensus 175 DlG~~~~~~~~ 185 (254)
T COG1484 175 DIGYEPFSQEE 185 (254)
T ss_pred cccCccCCHHH
Confidence 99765555554
No 178
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.56 E-value=0.022 Score=57.63 Aligned_cols=150 Identities=13% Similarity=0.170 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc--cCCCC-ceEEEEeCC---CCCHHHHHHHHHHH--
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV--KSRLP-FKVWYSVGK---NLDFSTAVQEIRNR-- 195 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~--~~~F~-~~~wv~vs~---~~~~~~i~~~l~~~-- 195 (355)
+..++.+...+... ...-+-|+|..|+|||++|+.+++...- ...|. ..-|+.+.- .++...+...+...
T Consensus 71 s~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~ 148 (531)
T TIGR02902 71 EEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVH 148 (531)
T ss_pred HHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcc
Confidence 45556666555432 2334568999999999999999763211 12232 123444432 12221111101000
Q ss_pred --H---h--------------hcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCC-------------------------
Q 036086 196 --R---N--------------EIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMR------------------------- 231 (355)
Q Consensus 196 --l---~--------------~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------------- 231 (355)
+ . ..-+...=.|+||++..-+....+.|...+.+..
T Consensus 149 ~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (531)
T TIGR02902 149 DPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQN 228 (531)
T ss_pred cchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhccc
Confidence 0 0 0001123489999999877778877766553210
Q ss_pred --CCCcEEEE-ecCChh-HhhhcccCCcccccCCCCChhhHHHHhhhhC
Q 036086 232 --LVGFYVLV-TTHSTS-VATMMMQTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 232 --~~gs~Ilv-TTR~~~-va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
....++|. ||++.. +... .......+.+.+|+.++-.+++++.+
T Consensus 229 ~~~~d~rlI~ATt~~p~~L~pa-LrsR~~~I~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 229 GLPADFRLIGATTRNPEEIPPA-LRSRCVEIFFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred CcccceEEEEEecCCcccCChH-HhhhhheeeCCCCCHHHHHHHHHHHH
Confidence 01235555 455432 2222 11112467889999999988888765
No 179
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.55 E-value=0.013 Score=55.36 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=37.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCC----CceEEEEeCCCCCHHHHHH
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRL----PFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~ 190 (355)
.-.++-|+|.+|+|||+|+.++.-.......+ ...+|++...+|+...+.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~ 155 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ 155 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence 45688899999999999999987532221111 3678999988888777664
No 180
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.54 E-value=0.0018 Score=53.19 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999874
No 181
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.53 E-value=0.086 Score=46.01 Aligned_cols=57 Identities=12% Similarity=0.291 Sum_probs=38.6
Q ss_pred HHHHHhHHHHHHHHHHHHhccccCCCCCCCCCCCCcchhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 87 KIHQGRLVPLLNSLQKIVAGHDVEGGALSQRSGETGLESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 87 ~~i~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
+.+.+++..+++.++.+.+.+. ...++.. ......|+|+|.+|+|||||...+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~-~~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 9 RLIRERIAKLRRELEKVKKQRE---------------------LQRRRRK-RSGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH---------------------HHHHhhh-hcCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 4566677777777777665431 1112211 3445789999999999999999988754
No 182
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0066 Score=61.80 Aligned_cols=147 Identities=16% Similarity=0.206 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHhcC----CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH---------
Q 036086 124 ESSVDSVKNALLRD----GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ--------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~----~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~--------- 190 (355)
+.-+++|++.|--. .-+-+++..||++|+|||.|++.|.. .....| +-++++.--|..+|--
T Consensus 329 ekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGHRRTYIGam 403 (782)
T COG0466 329 EKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGHRRTYIGAM 403 (782)
T ss_pred hhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhccccccccccC
Confidence 77888888887432 33347999999999999999999988 555555 2345555556555533
Q ss_pred --HHHHHHhhcCCCCcEEEEEeCCCCCCh----hhHHHHHHhhc-cCCC-----------CCcEEE-EecCCh-h-Hhhh
Q 036086 191 --EIRNRRNEIPSSKRLLFALDDVSHLND----DNLANLRLLVS-DMRL-----------VGFYVL-VTTHST-S-VATM 249 (355)
Q Consensus 191 --~l~~~l~~~l~~kr~LlVlDdvw~~~~----~~~~~l~~~l~-~~~~-----------~gs~Il-vTTR~~-~-va~~ 249 (355)
.+.+.+++. +.+.=+++||.+..-+. +.-..++..|. ..+. -=|.|+ |+|-+. + +...
T Consensus 404 PGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~P 482 (782)
T COG0466 404 PGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAP 482 (782)
T ss_pred ChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChH
Confidence 444544443 45677889999863211 11122333232 1110 014554 444332 1 3322
Q ss_pred cccCCcccccCCCCChhhHHHHhhhhCC
Q 036086 250 MMQTVPEAEHLIYFSESNSWSNLNCELP 277 (355)
Q Consensus 250 ~~~~~~~~~~l~~L~~~~s~~Lf~~~af 277 (355)
++... .++++.+-.++|=.++-+++..
T Consensus 483 LlDRM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 483 LLDRM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred Hhcce-eeeeecCCChHHHHHHHHHhcc
Confidence 12233 7899999999888877666543
No 183
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.53 E-value=0.061 Score=49.54 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=65.1
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEE---EeCCCCCHHHHHH-----------
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWY---SVGKNLDFSTAVQ----------- 190 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---~vs~~~~~~~i~~----------- 190 (355)
...+.++..|.. .+...-++|+|..|+|||||.+.+... +.. ....+++ .+..-.+..++..
T Consensus 96 ~~~~~~l~~l~~-~~~~~~~~i~g~~g~GKttl~~~l~~~--~~~-~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 96 GAADKLLPYLVR-NNRVLNTLIISPPQCGKTTLLRDLARI--LST-GISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred CcHHHHHHHHHh-CCCeeEEEEEcCCCCCHHHHHHHHhCc--cCC-CCceEEECCEEeecchhHHHHHHHhccccccccc
Confidence 344555666654 334567899999999999999999873 222 1222222 1110001111111
Q ss_pred ---------HHHHHHhhcC-CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhhh
Q 036086 191 ---------EIRNRRNEIP-SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 191 ---------~l~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
.-...+...+ ...+-++++|.+- ....+..+...+. .|..||+||....+...
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~----~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH----AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh----CCCEEEEEechhHHHHH
Confidence 0011111121 2468899999987 5666666655553 46679999998776443
No 184
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.52 E-value=0.016 Score=49.92 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=54.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc-cc--cCC---CC--ceEEEEeCCCCCHHHHHH--------------------HHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD-DV--KSR---LP--FKVWYSVGKNLDFSTAVQ--------------------EIR 193 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~-~~--~~~---F~--~~~wv~vs~~~~~~~i~~--------------------~l~ 193 (355)
.+++|+|+.|+|||||.+.+..+. .+ ... |. ...|+ .+ .+.+. ...
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q----~~~l~~~~L~~~~~~~~~~~LSgGq~qr 95 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ----LQFLIDVGLGYLTLGQKLSTLSGGELQR 95 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH----HHHHHHcCCCccccCCCcCcCCHHHHHH
Confidence 578999999999999999986321 11 111 11 12232 11 11222 112
Q ss_pred HHHhhcCCCC--cEEEEEeCCCCC-ChhhHHHHHHhhcc-CCCCCcEEEEecCChhHhh
Q 036086 194 NRRNEIPSSK--RLLFALDDVSHL-NDDNLANLRLLVSD-MRLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 194 ~~l~~~l~~k--r~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~~gs~IlvTTR~~~va~ 248 (355)
-.+...+-.+ .-+++||.--.. +....+.+...+.. .. .|..||++|++.+...
T Consensus 96 l~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~~ 153 (176)
T cd03238 96 VKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH
Confidence 2233344445 678888986432 33344444443332 12 3567999999887654
No 185
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.52 E-value=0.027 Score=48.40 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=58.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEE---eCCCCCHHH----------HHH------------------
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYS---VGKNLDFST----------AVQ------------------ 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~----------i~~------------------ 190 (355)
.+++|+|..|.|||||.+.+..-. ......+++. +.. .+... .++
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 489999999999999999998732 2233333331 211 11111 011
Q ss_pred -HHHHHHhhcCCCCcEEEEEeCCCCC-ChhhHHHHHHhhccCCCC-CcEEEEecCChhHhhh
Q 036086 191 -EIRNRRNEIPSSKRLLFALDDVSHL-NDDNLANLRLLVSDMRLV-GFYVLVTTHSTSVATM 249 (355)
Q Consensus 191 -~l~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~~-gs~IlvTTR~~~va~~ 249 (355)
...-.+...+-..+-+++||.--.. +....+.+...+..-... |..||++|++......
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 1122234445557789999997532 333444444444322102 6678999988765533
No 186
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.52 E-value=0.0021 Score=56.72 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+..+|+|.|.+|+|||||++.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 187
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.51 E-value=0.0018 Score=56.57 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
||+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999876
No 188
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.024 Score=48.32 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=56.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEE------------------EeCCCCCH--HHHHH-------HHHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWY------------------SVGKNLDF--STAVQ-------EIRN 194 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv------------------~vs~~~~~--~~i~~-------~l~~ 194 (355)
.+++|+|..|.|||||.+.+..-.. .....+++ .+.+.+.. ..+.. ...-
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl 105 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRI 105 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHH
Confidence 4789999999999999999976321 11121211 01111110 01110 1112
Q ss_pred HHhhcCCCCcEEEEEeCCCCC-ChhhHHHHHHhhccCCCCCcEEEEecCChhHhh
Q 036086 195 RRNEIPSSKRLLFALDDVSHL-NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 195 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~ 248 (355)
.+...+-.+.-+++||.-... +......+...+..-. .+..||++|.+.....
T Consensus 106 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~ 159 (171)
T cd03228 106 AIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHH
Confidence 244445567789999997532 3333444444444333 4567899998877664
No 189
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.044 Score=52.92 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++|+++|++|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999875
No 190
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.49 E-value=0.022 Score=49.92 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+++|+|..|.|||||.+.+...
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998763
No 191
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.48 E-value=0.039 Score=45.69 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=56.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEE------EeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWY------SVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSH- 214 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv------~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~- 214 (355)
.+++|+|..|.|||||++.+..-.. .....+|+ .....++.-... .-.+...+..+.-++++|+--.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~~i~~~~~lS~G~~~---rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTVKIGYFEQLSGGEKM---RLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeEEEEEEccCCHHHHH---HHHHHHHHhcCCCEEEEeCCccC
Confidence 5789999999999999999987422 12222322 111112222211 1123344455677889998753
Q ss_pred CChhhHHHHHHhhccCCCCCcEEEEecCChhHhhh
Q 036086 215 LNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 215 ~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
-+......+...+.... ..||++|++.+.+..
T Consensus 101 LD~~~~~~l~~~l~~~~---~til~~th~~~~~~~ 132 (144)
T cd03221 101 LDLESIEALEEALKEYP---GTVILVSHDRYFLDQ 132 (144)
T ss_pred CCHHHHHHHHHHHHHcC---CEEEEEECCHHHHHH
Confidence 24444555555554322 358888887665543
No 192
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.47 E-value=0.023 Score=50.43 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|+|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999976
No 193
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.47 E-value=0.0061 Score=58.00 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=43.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-----CHHHHHHHHHHHHhhc--CCCCcEEEEEeC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-----DFSTAVQEIRNRRNEI--PSSKRLLFALDD 211 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~i~~~l~~~l~~~--l~~kr~LlVlDd 211 (355)
..+..+.|+|+.|+|||.+|+.+++. ..-.| +-++.++-+ ..++.++++-..-.+. -+++.++|++|+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e--lg~~~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK--MGIEP---IVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH--cCCCe---EEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 45678999999999999999999994 33333 222221111 2333333333333322 257899999999
Q ss_pred CC
Q 036086 212 VS 213 (355)
Q Consensus 212 vw 213 (355)
+.
T Consensus 221 ID 222 (413)
T PLN00020 221 LD 222 (413)
T ss_pred hh
Confidence 86
No 194
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.45 E-value=0.29 Score=48.71 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..|++++|+.|+||||++.++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 47999999999999999999886
No 195
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.44 E-value=0.0081 Score=63.06 Aligned_cols=101 Identities=10% Similarity=0.192 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCC---CCHHHHHH---
Q 036086 124 ESSVDSVKNALLRD-------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKN---LDFSTAVQ--- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~i~~--- 190 (355)
++.++.|.+.+... ......+-++|+.|+|||+||+.+... .... .+.+..+.- ..+..+..
T Consensus 464 ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~~---~i~id~se~~~~~~~~~LiG~~~ 538 (758)
T PRK11034 464 DKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGIE---LLRFDMSEYMERHTVSRLIGAPP 538 (758)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCCC---cEEeechhhcccccHHHHcCCCC
Confidence 45555555555421 223457889999999999999998763 2222 223333321 12222221
Q ss_pred -----HHHHHHhhcCCC-CcEEEEEeCCCCCChhhHHHHHHhhcc
Q 036086 191 -----EIRNRRNEIPSS-KRLLFALDDVSHLNDDNLANLRLLVSD 229 (355)
Q Consensus 191 -----~l~~~l~~~l~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~ 229 (355)
.....+.+.+.. ...+|+||++...+.+.++.+...+..
T Consensus 539 gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 539 GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred CcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 001112222222 346999999987778888888777754
No 196
>PRK08233 hypothetical protein; Provisional
Probab=96.44 E-value=0.0025 Score=54.66 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999863
No 197
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.44 E-value=0.11 Score=48.31 Aligned_cols=178 Identities=15% Similarity=0.062 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHhcCcccc-----CCCCceEEEEeCCCCCHHHHHH-------
Q 036086 124 ESSVDSVKNALLRD-GNTVRFIHIVGVSGTDETAIAHRVFTDDDVK-----SRLPFKVWYSVGKNLDFSTAVQ------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~i~~------- 190 (355)
..-.+++.++|... ....+-+.|||.+|.|||++++......-.. ..+ .++.|.....++...+..
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHHHHhC
Confidence 44455555555554 4455678999999999999999987532111 111 355667778888887766
Q ss_pred ----------HHHHHHhhcCCC-CcEEEEEeCCCCC---Chhh---HHHHHHhhccCCCCCcEEEEecCChhHhhhcccC
Q 036086 191 ----------EIRNRRNEIPSS-KRLLFALDDVSHL---NDDN---LANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQT 253 (355)
Q Consensus 191 ----------~l~~~l~~~l~~-kr~LlVlDdvw~~---~~~~---~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~ 253 (355)
.+.......++. +-=+||+|.+.+. +... .-.....+.+.- .=+-|.+-|+.-.-|-. ...
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL-~ipiV~vGt~~A~~al~-~D~ 199 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL-QIPIVGVGTREAYRALR-TDP 199 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc-CCCeEEeccHHHHHHhc-cCH
Confidence 222222223322 3458899999741 1111 112233343333 44556666654332211 111
Q ss_pred C----cccccCCCCCh-hhHHHHhhhh--CCCCC-CCcchHHHHHHHHHHhcCCCchHH
Q 036086 254 V----PEAEHLIYFSE-SNSWSNLNCE--LPPSS-QEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 254 ~----~~~~~l~~L~~-~~s~~Lf~~~--af~~~-~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
+ -.++.|..-+. ++...|+... .++=. ..+-...+++..|...++|+.--+
T Consensus 200 QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 200 QLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 0 14555655544 3445554332 12211 122345688999999999998444
No 198
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.44 E-value=0.0065 Score=53.98 Aligned_cols=66 Identities=18% Similarity=0.352 Sum_probs=46.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHH------------------------------
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-DFSTAVQ------------------------------ 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~------------------------------ 190 (355)
.-++|+|..|+|||+|++.+.+... =+..+++.+++.. .+.++.+
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 3578999999999999999887432 2334777776553 3333333
Q ss_pred ---HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 ---EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 ---~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +++..|+++||+-
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred cchhhhHHHhh--cCCceeehhhhhH
Confidence 44555665 7899999999973
No 199
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.42 E-value=0.037 Score=49.79 Aligned_cols=96 Identities=15% Similarity=0.244 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC--CCCHHHHHHHHHHHHhhc
Q 036086 124 ESSVDSVKNALLRD--GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK--NLDFSTAVQEIRNRRNEI 199 (355)
Q Consensus 124 ~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~l~~~l~~~ 199 (355)
+..++.|++-...= +....-+-++|..|.|||+|++.+.+...-+. .+ -|-|++ -.++. .+.+.++.
T Consensus 33 e~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~~L~~l~----~l~~~l~~- 103 (249)
T PF05673_consen 33 ERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKEDLGDLP----ELLDLLRD- 103 (249)
T ss_pred HHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHHHhccHH----HHHHHHhc-
Confidence 55555554332111 22334566799999999999999887321111 11 233332 12222 33344442
Q ss_pred CCCCcEEEEEeCCCC-CChhhHHHHHHhhcc
Q 036086 200 PSSKRLLFALDDVSH-LNDDNLANLRLLVSD 229 (355)
Q Consensus 200 l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~ 229 (355)
...||+|.+||+.- .+......++..+..
T Consensus 104 -~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 104 -RPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred -CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 35799999999853 344556777766654
No 200
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.40 E-value=0.043 Score=58.81 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCC------CCceEEE-EeCCC----CCHHHHHHHH
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSR------LPFKVWY-SVGKN----LDFSTAVQEI 192 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv-~vs~~----~~~~~i~~~l 192 (355)
+.+.++++..|.... ..-+.++|.+|+|||++|..+... +... ....+|. .++.- .-.....+.+
T Consensus 179 ~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l 254 (852)
T TIGR03346 179 DEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERL 254 (852)
T ss_pred HHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHH
Confidence 778888988887542 233448999999999999988763 3221 1334443 22110 0000111122
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCCCC--------hhhHHHHHHhhccCCCCCcEEEEecCChhHhhh------cccCCccc
Q 036086 193 RNRRNEIP-SSKRLLFALDDVSHLN--------DDNLANLRLLVSDMRLVGFYVLVTTHSTSVATM------MMQTVPEA 257 (355)
Q Consensus 193 ~~~l~~~l-~~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~------~~~~~~~~ 257 (355)
...+.+.- .+++.+|++|++..-. .+.-+.++..+..+ .-++|-+|.....-.. +...- ..
T Consensus 255 ~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g---~i~~IgaTt~~e~r~~~~~d~al~rRf-~~ 330 (852)
T TIGR03346 255 KAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG---ELHCIGATTLDEYRKYIEKDAALERRF-QP 330 (852)
T ss_pred HHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC---ceEEEEeCcHHHHHHHhhcCHHHHhcC-CE
Confidence 22222221 2468999999987311 11122233333211 2344444443333111 01122 45
Q ss_pred ccCCCCChhhHHHHhhhh
Q 036086 258 EHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 258 ~~l~~L~~~~s~~Lf~~~ 275 (355)
+.+...+.++...++...
T Consensus 331 i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 331 VFVDEPTVEDTISILRGL 348 (852)
T ss_pred EEeCCCCHHHHHHHHHHH
Confidence 778888989888887654
No 201
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.40 E-value=0.0023 Score=51.32 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 036086 144 IHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~ 164 (355)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998873
No 202
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.39 E-value=0.04 Score=58.96 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+.+.+++++.|... ...-+.++|.+|+|||+||..+..
T Consensus 184 ~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 184 DEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred HHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHH
Confidence 77889999988864 233355899999999999998876
No 203
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.39 E-value=0.022 Score=48.67 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=55.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEE------------------EeCCCCCH--HHHHH-------HHHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWY------------------SVGKNLDF--STAVQ-------EIRN 194 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv------------------~vs~~~~~--~~i~~-------~l~~ 194 (355)
.+++|+|..|+|||||.+.+..-.. .....+++ .+.+.+.. ..+.. ...-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHH
Confidence 4799999999999999999986321 11111111 12222110 01111 1122
Q ss_pred HHhhcCCCCcEEEEEeCCCCC-ChhhHHHHHHhhccC-CCCCcEEEEecCChhHhh
Q 036086 195 RRNEIPSSKRLLFALDDVSHL-NDDNLANLRLLVSDM-RLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 195 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~~gs~IlvTTR~~~va~ 248 (355)
.+...+-.+.-+++||+-... +......+...+..- . .|..||++|++.....
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~ 160 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH
Confidence 234445556778899997532 333333343333321 2 4667889888877654
No 204
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.39 E-value=0.0041 Score=55.84 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+...+++|.|+.|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999998876
No 205
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.027 Score=47.21 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=58.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC--CCCHHHHHH------------HHHHHHhhcCCCCcEEE
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK--NLDFSTAVQ------------EIRNRRNEIPSSKRLLF 207 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~------------~l~~~l~~~l~~kr~Ll 207 (355)
.+++|+|..|.|||||.+.+.... ......+++.-.. ......... ...-.+...+....-++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 589999999999999999998732 2233444332111 000111111 11122344444567889
Q ss_pred EEeCCCCC-ChhhHHHHHHhhccCCCCCcEEEEecCChhHhhh
Q 036086 208 ALDDVSHL-NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 208 VlDdvw~~-~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
++|..-.. +......+...+......+..++++|.+......
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99997532 3334444444333221034568999988776655
No 206
>PRK06547 hypothetical protein; Provisional
Probab=96.38 E-value=0.0035 Score=53.72 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.....+|.|.|+.|+||||+|+.+.+.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999763
No 207
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.38 E-value=0.011 Score=57.97 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+||||||+.+..
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4799999999999999999853
No 208
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.016 Score=53.48 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=53.2
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH---------------------HHHHHHh
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ---------------------EIRNRRN 197 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~---------------------~l~~~l~ 197 (355)
+.-+++=|+|+.|+||||||.+++-. ....-...+|+..-..+++..+.. .+.+.+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 44578999999999999999998763 334444778999989898887765 3344444
Q ss_pred hcCCCCcEEEEEeCCC
Q 036086 198 EIPSSKRLLFALDDVS 213 (355)
Q Consensus 198 ~~l~~kr~LlVlDdvw 213 (355)
.....+--|+|+|.|-
T Consensus 136 ~~~~~~i~LvVVDSva 151 (279)
T COG0468 136 RSGAEKIDLLVVDSVA 151 (279)
T ss_pred HhccCCCCEEEEecCc
Confidence 4444456788888875
No 209
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.37 E-value=0.0033 Score=53.84 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=27.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEE
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWY 177 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 177 (355)
...+|.++|+.|+||||+|+.+++ ....++...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456899999999999999999987 444455444444
No 210
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.034 Score=48.99 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+++|+|..|+|||||++.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999985
No 211
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.36 E-value=0.003 Score=55.76 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.-.+|+|+|++|+|||||++.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 212
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.36 E-value=0.0064 Score=57.29 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=45.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----------------HHHHHHhhcCC-
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-----------------EIRNRRNEIPS- 201 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-----------------~l~~~l~~~l~- 201 (355)
.-+++-|+|++|+||||||.++.-. ....-...+|++....++...... +....+...++
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 3468889999999999999987652 222334566777666555443222 23333333332
Q ss_pred CCcEEEEEeCCC
Q 036086 202 SKRLLFALDDVS 213 (355)
Q Consensus 202 ~kr~LlVlDdvw 213 (355)
+.--+||+|.|-
T Consensus 132 ~~~~lIVIDSva 143 (325)
T cd00983 132 GAVDLIVVDSVA 143 (325)
T ss_pred cCCCEEEEcchH
Confidence 456789999975
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.35 E-value=0.017 Score=50.68 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=24.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEe
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSV 179 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 179 (355)
++||.+||+.|+||||.+-++......+ =..+..++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecC
Confidence 4789999999999998887776533222 223345554
No 214
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.014 Score=52.90 Aligned_cols=22 Identities=9% Similarity=0.422 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|.|||||.+.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999976
No 215
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.32 E-value=0.014 Score=53.48 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=34.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccc--cCCCCceEEEEeCCCCC-HHHHHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDV--KSRLPFKVWYSVGKNLD-FSTAVQ 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~-~~~i~~ 190 (355)
.-++|+|-.|+|||+|+..+.++..+ +.+-+..+++-+.+... +.++..
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~ 121 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKD 121 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHH
Confidence 35799999999999999998875431 12346777888876543 344444
No 216
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.079 Score=54.96 Aligned_cols=169 Identities=15% Similarity=0.190 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHhcC------C-CCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----H
Q 036086 124 ESSVDSVKNALLRD------G-NTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-----E 191 (355)
Q Consensus 124 ~~~~~~l~~~L~~~------~-~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-----~ 191 (355)
..+.+++++.|..+ + .-++=+-++|++|.|||-||+.+.....+ -|+++|.+ ...+.+. .
T Consensus 320 K~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS-EFvE~~~g~~asr 391 (774)
T KOG0731|consen 320 KEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS-EFVEMFVGVGASR 391 (774)
T ss_pred HHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH-HHHHHhcccchHH
Confidence 56667777777765 2 23456779999999999999999985443 24455432 1111111 2
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCC---------------ChhhHHHHHHhhccCCCCCcEEEE--ecCChhHhhh-cc--
Q 036086 192 IRNRRNEIPSSKRLLFALDDVSHL---------------NDDNLANLRLLVSDMRLVGFYVLV--TTHSTSVATM-MM-- 251 (355)
Q Consensus 192 l~~~l~~~l~~kr~LlVlDdvw~~---------------~~~~~~~l~~~l~~~~~~gs~Ilv--TTR~~~va~~-~~-- 251 (355)
+.+.+...=...++++.+|++..- ....++.+..-+.... ..+.||+ +|...++... .+
T Consensus 392 vr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~-~~~~vi~~a~tnr~d~ld~allrp 470 (774)
T KOG0731|consen 392 VRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE-TSKGVIVLAATNRPDILDPALLRP 470 (774)
T ss_pred HHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc-CCCcEEEEeccCCccccCHHhcCC
Confidence 222223333356789999987521 1123444443333322 2232333 5555444221 02
Q ss_pred cCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchH
Q 036086 252 QTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSL 303 (355)
Q Consensus 252 ~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla 303 (355)
|.-+..+.++.-+.....++|..++-.- +...+..++++ ++..-.|++=|
T Consensus 471 GRfdr~i~i~~p~~~~r~~i~~~h~~~~-~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 471 GRFDRQIQIDLPDVKGRASILKVHLRKK-KLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CccccceeccCCchhhhHHHHHHHhhcc-CCCcchhhHHH-HHhcCCCCcHH
Confidence 2224677888888888899998886332 32345556666 77777777733
No 217
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.023 Score=48.76 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|.|||||++.+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999975
No 218
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.0032 Score=52.70 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.-|.|.|++|+|||||++.+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH
Confidence 4589999999999999999987
No 219
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.30 E-value=0.043 Score=48.84 Aligned_cols=23 Identities=13% Similarity=0.479 Sum_probs=20.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+++|+|..|.|||||.+.+..-
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999763
No 220
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.30 E-value=0.04 Score=48.93 Aligned_cols=106 Identities=11% Similarity=0.083 Sum_probs=56.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccc--cCC-----------CCceEEEEeCCCCCHHHHHH----HH--HHHHhhcCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDV--KSR-----------LPFKVWYSVGKNLDFSTAVQ----EI--RNRRNEIPS 201 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~--~~~-----------F~~~~wv~vs~~~~~~~i~~----~l--~~~l~~~l~ 201 (355)
.+++.|+|+.|.|||||.+.+...... ... |+ .+...+....++..-+. ++ ...+. .+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d-~i~~~l~~~~si~~~~S~f~~el~~l~~~l-~~~ 106 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVD-KIFTRMSSRESVSSGQSAFMIDLYQVSKAL-RLA 106 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeee-eeeeeeCCccChhhccchHHHHHHHHHHHH-HhC
Confidence 488899999999999999887631110 001 11 11122222222221111 11 11111 224
Q ss_pred CCcEEEEEeCCCCCC-hhhH----HHHHHhhccC-CCCCcEEEEecCChhHhhh
Q 036086 202 SKRLLFALDDVSHLN-DDNL----ANLRLLVSDM-RLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 202 ~kr~LlVlDdvw~~~-~~~~----~~l~~~l~~~-~~~gs~IlvTTR~~~va~~ 249 (355)
.++.|++||..-... ..+. ..+...+... . .+..+|+||.+.+++..
T Consensus 107 ~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~-~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 107 TRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGP-ECPRVIVSTHFHELFNR 159 (213)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCC-CCcEEEEEcChHHHHHh
Confidence 678999999987432 2221 1223333322 2 34579999999988876
No 221
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.29 E-value=0.011 Score=48.52 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=53.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccc-cCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhhH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDV-KSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLNDDNL 220 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~ 220 (355)
.-|-|.|..|+||+++|+.++....- ...|...- ... .+ .+ .+... +.--++|+|+..-+....
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~---~~~-~~-~~-------~l~~a---~~gtL~l~~i~~L~~~~Q 86 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVID---CAS-LP-AE-------LLEQA---KGGTLYLKNIDRLSPEAQ 86 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC---HHC-TC-HH-------HHHHC---TTSEEEEECGCCS-HHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec---hhh-Cc-HH-------HHHHc---CCCEEEECChHHCCHHHH
Confidence 34679999999999999999875432 22232211 001 11 11 12221 455678999987777777
Q ss_pred HHHHHhhccC-CCCCcEEEEecCCh
Q 036086 221 ANLRLLVSDM-RLVGFYVLVTTHST 244 (355)
Q Consensus 221 ~~l~~~l~~~-~~~gs~IlvTTR~~ 244 (355)
..+...+... . ...|+|.||+..
T Consensus 87 ~~L~~~l~~~~~-~~~RlI~ss~~~ 110 (138)
T PF14532_consen 87 RRLLDLLKRQER-SNVRLIASSSQD 110 (138)
T ss_dssp HHHHHHHHHCTT-TTSEEEEEECC-
T ss_pred HHHHHHHHhcCC-CCeEEEEEeCCC
Confidence 7777777644 4 678999998754
No 222
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.29 E-value=0.037 Score=48.68 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|+|||||.+.+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 223
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.29 E-value=0.0044 Score=58.94 Aligned_cols=41 Identities=10% Similarity=0.233 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHhcC----CCCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 124 ESSVDSVKNALLRD----GNTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 124 ~~~~~~l~~~L~~~----~~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
++.++++++++... +...+++.++|++|+||||||..+.+.
T Consensus 57 ~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 57 EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 67788888888654 335688999999999999999999874
No 224
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.28 E-value=0.013 Score=52.05 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=29.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD 184 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 184 (355)
.-.++.|.|.+|+|||||+.++... ....=...+|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 3568999999999999999998753 222223456776655554
No 225
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.26 E-value=0.035 Score=48.91 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=34.1
Q ss_pred HHhhcCCCCcEEEEEeCCCCC-ChhhHHHHHHhhcc-CCCCCcEEEEecCChhHhhh
Q 036086 195 RRNEIPSSKRLLFALDDVSHL-NDDNLANLRLLVSD-MRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 195 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~~gs~IlvTTR~~~va~~ 249 (355)
.+.+.|.=++=++.+|..-+. +++.-.+....... .. .|-..|+.|..-..|..
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMGFARE 201 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechhHHHHH
Confidence 355566667788899997642 44444444433332 23 57778888888777766
No 226
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.26 E-value=0.1 Score=49.01 Aligned_cols=38 Identities=8% Similarity=0.171 Sum_probs=30.6
Q ss_pred HHHHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 127 VDSVKNALLRD-GNTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 127 ~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+.|.+.+... .....+|+|.|.=|+||||+.+.+.+.
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45666767655 367889999999999999999998763
No 227
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.24 E-value=0.019 Score=56.19 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=44.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCH-HHHHH------------------------------
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDF-STAVQ------------------------------ 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~i~~------------------------------ 190 (355)
..++|+|..|+|||||++.+.+.. ..+..+.+-+.+.... .++..
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999998632 1234455555544332 22222
Q ss_pred ---HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 ---EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 ---~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +++..|+++||+-
T Consensus 239 ~A~tiAEyfrd--~G~~VLl~~DslT 262 (444)
T PRK08972 239 TATTIAEYFRD--QGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHH--cCCCEEEEEcChH
Confidence 34555554 5899999999984
No 228
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.22 E-value=0.058 Score=46.44 Aligned_cols=104 Identities=16% Similarity=0.080 Sum_probs=56.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEE------EeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWY------SVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHL 215 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv------~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~ 215 (355)
.+++|+|..|+|||||.+.+..-.. .....+++ .+.+.+.+..-.++ .-.+...+..+.-+++||.--..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~LSgGq~q-rv~laral~~~p~lllLDEPts~ 101 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYIDLSGGELQ-RVAIAAALLRNATFYLFDEPSAY 101 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCCCCHHHHH-HHHHHHHHhcCCCEEEEECCccc
Confidence 4899999999999999999886321 12222221 12333332222222 22234444556788999986532
Q ss_pred -ChhhHHHHHHhhccC-CCCCcEEEEecCChhHhhh
Q 036086 216 -NDDNLANLRLLVSDM-RLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 216 -~~~~~~~l~~~l~~~-~~~gs~IlvTTR~~~va~~ 249 (355)
+......+...+... ...+..||++|++......
T Consensus 102 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 102 LDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 333333333333221 1023568888888765543
No 229
>PRK06762 hypothetical protein; Provisional
Probab=96.19 E-value=0.0039 Score=52.83 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|.|+|+.|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 230
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.16 E-value=0.02 Score=53.87 Aligned_cols=51 Identities=6% Similarity=0.070 Sum_probs=36.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHH
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKS----RLPFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~ 190 (355)
.-+++-|+|.+|+|||+|+.++.-...... .=...+|++...+|+...+.+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~ 149 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA 149 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH
Confidence 456889999999999999988653222211 113567999888888877654
No 231
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.0045 Score=54.64 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+.+|+|.|.+|+||||+|+.+++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 232
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.15 E-value=0.027 Score=52.90 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=37.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHH
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKS----RLPFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~ 190 (355)
.-.++-|+|.+|+|||||+.++.-...... .=...+||+...+|+...+.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~ 148 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ 148 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH
Confidence 457889999999999999999865322211 012678999988888776654
No 233
>PRK00625 shikimate kinase; Provisional
Probab=96.15 E-value=0.023 Score=48.70 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.|.++||.|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 234
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.14 E-value=0.044 Score=51.31 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+++|+|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999763
No 235
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.14 E-value=0.032 Score=56.53 Aligned_cols=117 Identities=15% Similarity=0.247 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHH-HHHHHhcCccccCCCCceEEEEeCCCCCHHHH--HH----------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETA-IAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTA--VQ---------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i--~~---------- 190 (355)
..-+++|++.+.. -.||.|||-.|+|||| |+|.+|.+---.+ --+.+.|+--+..+ .+
T Consensus 358 f~~R~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edGY~~~-----GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 358 FACRDQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDGYADN-----GMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred HHHHHHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcccccC-----CeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 4445666666653 3689999999999986 7888887542222 23444444433322 12
Q ss_pred ---------------------------HHHHHHhhcCCCCcEEEEEeCCCCC--ChhhHHH-HHHhhccCCCCCcEEEEe
Q 036086 191 ---------------------------EIRNRRNEIPSSKRLLFALDDVSHL--NDDNLAN-LRLLVSDMRLVGFYVLVT 240 (355)
Q Consensus 191 ---------------------------~l~~~l~~~l~~kr~LlVlDdvw~~--~~~~~~~-l~~~l~~~~~~gs~IlvT 240 (355)
-+.+.|....-.|=..||+|...+. +.+.+-. ++..+.. . ..-|+|||
T Consensus 429 G~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-R-rdlKliVt 506 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-R-RDLKLIVT 506 (1042)
T ss_pred ccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-h-ccceEEEe
Confidence 3344444444445568888988643 2222222 2333333 3 46799999
Q ss_pred cCC---hhHhhhccc
Q 036086 241 THS---TSVATMMMQ 252 (355)
Q Consensus 241 TR~---~~va~~~~~ 252 (355)
|-. +..+.. +|
T Consensus 507 SATm~a~kf~nf-Fg 520 (1042)
T KOG0924|consen 507 SATMDAQKFSNF-FG 520 (1042)
T ss_pred eccccHHHHHHH-hC
Confidence 864 334444 55
No 236
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.13 E-value=0.23 Score=44.51 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=52.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-CChhhH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSH-LNDDNL 220 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~-~~~~~~ 220 (355)
.-|-+||..|+||+.|++.+.+ .+.+..-..+=|+-++-.++. .+.+.|+. ..+||.|..||+.- +..+.+
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~k~dl~~Lp----~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~y 157 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVDKEDLATLP----DLVELLRA--RPEKFILFCDDLSFEEGDDAY 157 (287)
T ss_pred cceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEcHHHHhhHH----HHHHHHhc--CCceEEEEecCCCCCCCchHH
Confidence 4567999999999999999988 454444333323212222222 33333432 36799999999963 355677
Q ss_pred HHHHHhhccC
Q 036086 221 ANLRLLVSDM 230 (355)
Q Consensus 221 ~~l~~~l~~~ 230 (355)
..++..+..+
T Consensus 158 K~LKs~LeG~ 167 (287)
T COG2607 158 KALKSALEGG 167 (287)
T ss_pred HHHHHHhcCC
Confidence 7888887654
No 237
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.13 E-value=0.035 Score=49.21 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+++|+|..|.|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999753
No 238
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.12 E-value=0.017 Score=54.91 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=37.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCcccc---CC-CCceEEEEeCCCCCHHHHHH
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVK---SR-LPFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~---~~-F~~~~wv~vs~~~~~~~i~~ 190 (355)
.-.++-|+|.+|+|||+|+.++.-..... .. -...+|++-..+|+...+.+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ 179 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP 179 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH
Confidence 44688899999999999999875322221 11 23567999989888887665
No 239
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.12 E-value=0.041 Score=48.19 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|.|||||.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998875
No 240
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.11 E-value=0.019 Score=56.41 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++|+|..|+|||||++.+..
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~ 187 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLAR 187 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998875
No 241
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.11 E-value=0.039 Score=49.00 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+++|+|..|+|||||.+.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999763
No 242
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.019 Score=56.68 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhcC------CCC-eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH---HHH
Q 036086 124 ESSVDSVKNALLRD------GNT-VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ---EIR 193 (355)
Q Consensus 124 ~~~~~~l~~~L~~~------~~~-~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~---~l~ 193 (355)
..+.++|++.|.+. +++ ++=|-++|++|.|||-||+.|.....+ -+|.+.+..||..-+-. .+.
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V------PFF~~sGSEFdEm~VGvGArRVR 386 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV------PFFYASGSEFDEMFVGVGARRVR 386 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC------CeEeccccchhhhhhcccHHHHH
Confidence 67788899999876 334 456789999999999999999985543 22444455666543322 333
Q ss_pred HHHhhcCCCCcEEEEEeCCC
Q 036086 194 NRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 194 ~~l~~~l~~kr~LlVlDdvw 213 (355)
+.+...-+.-+|.|.+|.+.
T Consensus 387 dLF~aAk~~APcIIFIDEiD 406 (752)
T KOG0734|consen 387 DLFAAAKARAPCIIFIDEID 406 (752)
T ss_pred HHHHHHHhcCCeEEEEechh
Confidence 44444444568999999985
No 243
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.09 E-value=0.52 Score=45.79 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 126 SVDSVKNALLRD-------GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 126 ~~~~l~~~L~~~-------~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-.++|+++|-.. ...+.||-.||.-|.||||-+-++.+
T Consensus 78 V~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~ 122 (451)
T COG0541 78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK 122 (451)
T ss_pred HHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH
Confidence 345666666532 24578999999999999999888766
No 244
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.09 E-value=0.041 Score=58.07 Aligned_cols=149 Identities=14% Similarity=0.129 Sum_probs=76.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC----CCC-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK----NLD-FSTAVQEIRNRRNEIPSSKRLLFALDDVSHL 215 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~-~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~ 215 (355)
.+-+-++|++|+|||+||+.+.+. ...+| +.+..+. ... ... .+...+...-...+++|++|++..-
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e--~~~~f---i~v~~~~l~~~~vGese~---~i~~~f~~A~~~~p~iifiDEid~l 558 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATE--SGANF---IAVRGPEILSKWVGESEK---AIREIFRKARQAAPAIIFFDEIDAI 558 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehHHHhhcccCcHHH---HHHHHHHHHHhcCCEEEEEEChhhh
Confidence 345788999999999999999983 33333 1221111 000 011 1222222223456799999998521
Q ss_pred --------Ch----hhHHHHHHhhccCC-CCCcEEEEecCChhHhhhc-c--cCCcccccCCCCChhhHHHHhhhhCCCC
Q 036086 216 --------ND----DNLANLRLLVSDMR-LVGFYVLVTTHSTSVATMM-M--QTVPEAEHLIYFSESNSWSNLNCELPPS 279 (355)
Q Consensus 216 --------~~----~~~~~l~~~l~~~~-~~gs~IlvTTR~~~va~~~-~--~~~~~~~~l~~L~~~~s~~Lf~~~af~~ 279 (355)
+. .....+...+..-. ..+--||.||...+..... . |.-+..+.+.+.+.++-.++|+...-+.
T Consensus 559 ~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~ 638 (733)
T TIGR01243 559 APARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM 638 (733)
T ss_pred hccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC
Confidence 00 11233333333211 0234466677655433210 1 2223567888888888888887653221
Q ss_pred C-CCcchHHHHHHHHHHhcCCCc
Q 036086 280 S-QEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 280 ~-~~~~~~~~~~~~i~~~c~GlP 301 (355)
. ....++.. ++..|.|.-
T Consensus 639 ~~~~~~~l~~----la~~t~g~s 657 (733)
T TIGR01243 639 PLAEDVDLEE----LAEMTEGYT 657 (733)
T ss_pred CCCccCCHHH----HHHHcCCCC
Confidence 1 12233444 446677765
No 245
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.07 E-value=0.0051 Score=53.00 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+.++|.|+|+.|+||||+++.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
No 246
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.06 E-value=0.014 Score=55.04 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=43.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----------------HHHHHHhhcCC-
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-----------------EIRNRRNEIPS- 201 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-----------------~l~~~l~~~l~- 201 (355)
.-+++-|+|++|+||||||.++.... ...=...+|+.....++...... +....+...++
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 34688999999999999998876532 22223455776555544432221 22333333332
Q ss_pred CCcEEEEEeCCC
Q 036086 202 SKRLLFALDDVS 213 (355)
Q Consensus 202 ~kr~LlVlDdvw 213 (355)
+.--+||+|.|-
T Consensus 132 ~~~~lIVIDSv~ 143 (321)
T TIGR02012 132 GAVDIIVVDSVA 143 (321)
T ss_pred cCCcEEEEcchh
Confidence 456799999985
No 247
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.06 E-value=0.026 Score=51.84 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=54.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCC--------------CCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEE
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSR--------------LPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLL 206 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~--------------F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~L 206 (355)
-.++.|.|..|+||||++..+.+. +... ++....+.+...... .....++..+....=.
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~-----~~~~~l~~~lR~~PD~ 152 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPGINQVQVNEKAGL-----TFARGLRAILRQDPDI 152 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCCceEEEeCCcCCc-----CHHHHHHHHhccCCCE
Confidence 457899999999999999877542 1110 111122222221100 3455566667777888
Q ss_pred EEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhh
Q 036086 207 FALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 207 lVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~ 248 (355)
|+++.+. +.+....+..+.. .|--++-|....++..
T Consensus 153 i~vgEiR--~~e~a~~~~~aa~----tGh~v~tTlHa~~~~~ 188 (264)
T cd01129 153 IMVGEIR--DAETAEIAVQAAL----TGHLVLSTLHTNDAPG 188 (264)
T ss_pred EEeccCC--CHHHHHHHHHHHH----cCCcEEEEeccCCHHH
Confidence 9999998 6654443333322 3444666666555444
No 248
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.05 E-value=0.03 Score=53.15 Aligned_cols=62 Identities=21% Similarity=0.390 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHhcCCC-CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 036086 124 ESSVDSVKNALLRDGN-TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~-~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 190 (355)
+.....+..++...+. -+..|-|.|-.|.|||.+.+++++.... ..+|+++-+.|+...++.
T Consensus 12 e~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle 74 (438)
T KOG2543|consen 12 ESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLE 74 (438)
T ss_pred HHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHH
Confidence 5566666666655444 3556689999999999999999985522 247998888887766555
No 249
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.05 E-value=0.041 Score=51.53 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|.|||||.+.+..
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999875
No 250
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.05 E-value=0.014 Score=57.52 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=47.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCH-HHHHH-----------------------------H
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDF-STAVQ-----------------------------E 191 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~i~~-----------------------------~ 191 (355)
.-++|+|.+|+|||||+.++.+... +.+-+..+++-+.+.... .++.. .
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 4589999999999999988776432 225577777777654432 23333 2
Q ss_pred HHHHHhhcC---CCCcEEEEEeCC
Q 036086 192 IRNRRNEIP---SSKRLLFALDDV 212 (355)
Q Consensus 192 l~~~l~~~l---~~kr~LlVlDdv 212 (355)
..-.+.+++ +++.+|+++||+
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 233344444 479999999998
No 251
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.04 E-value=0.089 Score=51.53 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+.+|.++|+.|+||||++..+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999988753
No 252
>PRK10867 signal recognition particle protein; Provisional
Probab=96.04 E-value=0.091 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=20.0
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+.+|.++|++|+||||.+..+..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999996665543
No 253
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.04 E-value=0.035 Score=53.02 Aligned_cols=100 Identities=10% Similarity=0.134 Sum_probs=61.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH-----H-HH--------HHHHHHHhhcCCCCcEE
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFS-----T-AV--------QEIRNRRNEIPSSKRLL 206 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----~-i~--------~~l~~~l~~~l~~kr~L 206 (355)
-..|.|.|+.|+||||+.+.+.+ .+..+...+++.- .++.... . +. ....+.++..|....=.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti-Edp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~ 198 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI-EDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDV 198 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE-cCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCE
Confidence 46799999999999999998876 3333344444431 1111000 0 00 03455667777788899
Q ss_pred EEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhhh
Q 036086 207 FALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 207 lVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
|++|.+. +...+...... .. .|..|+.|+...+++..
T Consensus 199 i~vgEir--d~~~~~~~l~a---a~-tGh~v~~T~Ha~~~~~~ 235 (343)
T TIGR01420 199 ILIGEMR--DLETVELALTA---AE-TGHLVFGTLHTNSAAQT 235 (343)
T ss_pred EEEeCCC--CHHHHHHHHHH---HH-cCCcEEEEEcCCCHHHH
Confidence 9999998 66666543332 23 46568888777665543
No 254
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.02 E-value=0.04 Score=48.32 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=55.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccc----------cCCCC-ceEE--EEeCCCCCHH--HHH---HHHHHHHhhcCCCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDV----------KSRLP-FKVW--YSVGKNLDFS--TAV---QEIRNRRNEIPSSK 203 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~----------~~~F~-~~~w--v~vs~~~~~~--~i~---~~l~~~l~~~l~~k 203 (355)
.++.|+|+.|.|||||.+.+.....+ .-.|. ..++ .++.++.... ... +.+...+...-..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 78999999999999999887632110 00111 1222 3332221110 000 12222222221137
Q ss_pred cEEEEEeCCCCC-ChhhHHHH----HHhhccCCCCCcEEEEecCChhHhhh
Q 036086 204 RLLFALDDVSHL-NDDNLANL----RLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 204 r~LlVlDdvw~~-~~~~~~~l----~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
+-++++|..-.. +......+ ...+. . .|..+|++|.+.+.+..
T Consensus 106 p~llllDEp~~glD~~~~~~l~~~ll~~l~--~-~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 106 PVLFLLDEIFKGTNSRERQAASAAVLKFLK--N-KNTIGIISTHDLELADL 153 (199)
T ss_pred CeEEEEecccCCCCHHHHHHHHHHHHHHHH--H-CCCEEEEEcCcHHHHHh
Confidence 899999996431 22222222 22232 3 46779999999888776
No 255
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.02 E-value=0.005 Score=44.21 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|.|.|..|+||||+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998877
No 256
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.02 E-value=0.071 Score=44.98 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=55.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC-----cc------ccC-----------CCCceEEEEeCCCC-----CHHHHHH---H
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD-----DD------VKS-----------RLPFKVWYSVGKNL-----DFSTAVQ---E 191 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~-----~~------~~~-----------~F~~~~wv~vs~~~-----~~~~i~~---~ 191 (355)
..|-|++..|.||||+|..+.-. .+ ++. .++..-|...+..+ +...-.. .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 46778888899999999765421 01 111 11223344433322 1111111 3
Q ss_pred HHHHHhhcCCC-CcEEEEEeCCCCC---ChhhHHHHHHhhccCCCCCcEEEEecCChh
Q 036086 192 IRNRRNEIPSS-KRLLFALDDVSHL---NDDNLANLRLLVSDMRLVGFYVLVTTHSTS 245 (355)
Q Consensus 192 l~~~l~~~l~~-kr~LlVlDdvw~~---~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~ 245 (355)
..+..++.+.. +-=|||||.+-.. ..-..+.+...+.... .+.-||+|.|+..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp-~~~evIlTGr~~p 139 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP-EDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC-CCCEEEEECCCCC
Confidence 33444444544 4469999998421 2233445555555544 5667999999854
No 257
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.02 E-value=0.043 Score=48.17 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+++|+|..|.|||||.+.+...
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999763
No 258
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.00 E-value=0.071 Score=47.57 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=20.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+++|+|..|+|||||++.+...
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999863
No 259
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.99 E-value=0.011 Score=55.04 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999987643
No 260
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.99 E-value=0.027 Score=55.16 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=43.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCH-HHHHH-----------------------------
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDF-STAVQ----------------------------- 190 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~i~~----------------------------- 190 (355)
-..++|+|..|+|||||++.+.+... -+..+.+-+.+.... .++..
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 35689999999999999999987332 123344444443322 12221
Q ss_pred ----HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 ----EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 ----~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.+++ +++..|+++||+-
T Consensus 234 ~~a~tiAEyfrd--~G~~Vll~~DslT 258 (442)
T PRK08927 234 YLTLAIAEYFRD--QGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHH--CCCcEEEEEeCcH
Confidence 44555554 5899999999984
No 261
>PRK08149 ATP synthase SpaL; Validated
Probab=95.99 E-value=0.026 Score=55.22 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..++|+|..|+|||||...+.+.
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~ 174 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEH 174 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcC
Confidence 46899999999999999998863
No 262
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.98 E-value=0.15 Score=42.46 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=69.3
Q ss_pred hHHHH-HHHHHHHHHHHhH-HHHhhc----hhhHHHHHHHHHHHHHHHHHHHhccc--CCh-H--HHHHHHHHhhhHhHH
Q 036086 2 ADKAA-ELLDLVCGRLDSQ-AGAFWN----NGEMKRLRLNLRDLHNLLRKAKQDAI--LNP-L--LTDLNDLASDVDGLI 70 (355)
Q Consensus 2 A~~~~-a~v~~l~~kl~s~-~~e~~~----g~~~~~L~~~L~~i~~~l~~a~~~~~--~~~-~--l~~lr~~ayd~eD~l 70 (355)
|+.+. |+++.+++.|... ...... +.-+++|.+.++.|...+++.+.... ..+ . ++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 44455 7777777777776 433333 38899999999999999999886432 233 2 999999999999999
Q ss_pred HHHHHHHHhhhhhHHhHHHHHhHHHHHHHHHHHHh
Q 036086 71 DARMEVSKYKFEKKVMKIHQGRLVPLLNSLQKIVA 105 (355)
Q Consensus 71 D~~~~~~~~~~~~~~r~~i~~~i~~l~~~l~~i~~ 105 (355)
..|.+..+.... ..++.+++|+++.+.+....+
T Consensus 83 ~k~sk~~r~n~~--kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 83 EKCSKVRRWNLY--KKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHhccccHHHHH--hhHhHHHHHHHHHHHHHHHhc
Confidence 999322221111 234566777777766666554
No 263
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.07 Score=52.18 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-.+++++|+.|+||||+...+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999987754
No 264
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.97 E-value=0.036 Score=54.84 Aligned_cols=142 Identities=14% Similarity=0.164 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----HH--HHHH
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-----EI--RNRR 196 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-----~l--~~~l 196 (355)
++.++.+...++.+ .-|-+.|++|+|||+||+.+.....-...|.... +..+ ...+++. .. ...+
T Consensus 26 e~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~-~~ft---tp~DLfG~l~i~~~~~~g~f 97 (498)
T PRK13531 26 SHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLM-TRFS---TPEEVFGPLSIQALKDEGRY 97 (498)
T ss_pred HHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcccCcceeee-eeec---CcHHhcCcHHHhhhhhcCch
Confidence 34444444444432 2367899999999999999887322222343111 1101 1122211 11 1111
Q ss_pred hhcCCC---CcEEEEEeCCCCCChhhHHHHHHhhccCC----C----CCcEEEEecCChhHhh-------hcccCCcccc
Q 036086 197 NEIPSS---KRLLFALDDVSHLNDDNLANLRLLVSDMR----L----VGFYVLVTTHSTSVAT-------MMMQTVPEAE 258 (355)
Q Consensus 197 ~~~l~~---kr~LlVlDdvw~~~~~~~~~l~~~l~~~~----~----~gs~IlvTTR~~~va~-------~~~~~~~~~~ 258 (355)
....+| .--++++|+++..+......+...+.... + -..++++++.++ +.. . +..-.-.+
T Consensus 98 ~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~-LPE~g~~leAL-~DRFliri 175 (498)
T PRK13531 98 QRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE-LPEADSSLEAL-YDRMLIRL 175 (498)
T ss_pred hhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC-CcccCCchHHh-HhhEEEEE
Confidence 111222 12289999999888888887777663211 0 122565655553 221 1 11111357
Q ss_pred cCCCCChhhH-HHHhhhh
Q 036086 259 HLIYFSESNS-WSNLNCE 275 (355)
Q Consensus 259 ~l~~L~~~~s-~~Lf~~~ 275 (355)
.++++++++. ..++...
T Consensus 176 ~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 176 WLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCCchHHHHHHHHcc
Confidence 8899985444 7777653
No 265
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.96 E-value=0.033 Score=55.17 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=35.5
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCC-ChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhcccC
Q 036086 192 IRNRRNEIPSSKRLLFALDDVSHL-NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQT 253 (355)
Q Consensus 192 l~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~ 253 (355)
....|.+.|-.++.|+.||+=-+. +.+...-|-..|..-. .+ .++|++|+++.... +++
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d-~~-~lVi~sh~QDfln~-vCT 287 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD-RI-ILVIVSHSQDFLNG-VCT 287 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc-Cc-eEEEEecchhhhhh-Hhh
Confidence 344555666678999999996532 2222222344454433 23 68999999886555 444
No 266
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.94 E-value=0.029 Score=54.90 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=43.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHH-----------------------------
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-DFSTAVQ----------------------------- 190 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~----------------------------- 190 (355)
-..++|+|..|+|||||.+.+.+.. +.+..+++.+.+.. .+.+.+.
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 3478999999999999999988632 22334444444322 2223222
Q ss_pred ----HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 ----EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 ----~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +++..|+++||+-
T Consensus 231 ~~a~tiAEyfrd--~G~~VLl~~Dslt 255 (433)
T PRK07594 231 FVATTIAEFFRD--NGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHH--CCCcEEEEEeCHH
Confidence 34555554 4889999999984
No 267
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.94 E-value=0.055 Score=46.57 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=56.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccC-----------CCC------ceEEEEeCCC---------CCHHHHHH-----
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKS-----------RLP------FKVWYSVGKN---------LDFSTAVQ----- 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~-----------~F~------~~~wv~vs~~---------~~~~~i~~----- 190 (355)
.+++|+|..|.|||||.+.+..-..... .++ ..+. .+.+. .++.+-+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~~~t~~e~l~~~~~L 105 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA-YVPEDRKREGLVLDLSVAENIALSSLL 105 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE-EecCCcccCcccCCCcHHHHHHHHhhc
Confidence 4789999999999999999976321100 010 0111 12222 12222111
Q ss_pred ----HHHHHHhhcCCCCcEEEEEeCCCCC-ChhhHHHHHHhhccC-CCCCcEEEEecCChhHhh
Q 036086 191 ----EIRNRRNEIPSSKRLLFALDDVSHL-NDDNLANLRLLVSDM-RLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 191 ----~l~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~~gs~IlvTTR~~~va~ 248 (355)
...-.+...+-.++-+++||+--.. +......+...+..- . .|..||++|++.....
T Consensus 106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~ 168 (182)
T cd03215 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSELDELL 168 (182)
T ss_pred CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHH
Confidence 1112345556667889999996532 344444444444321 2 3667899998865443
No 268
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.93 E-value=0.03 Score=54.89 Aligned_cols=66 Identities=15% Similarity=0.316 Sum_probs=45.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHH------------------------------
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-DFSTAVQ------------------------------ 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~------------------------------ 190 (355)
..++|+|..|+|||||.+.+++... -+..+.+.+.+.. .+.++..
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGF 238 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999997432 2455666665543 2333332
Q ss_pred ---HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 ---EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 ---~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +++..|+++||+-
T Consensus 239 ~a~tiAEyfrd--~G~~Vll~~DslT 262 (439)
T PRK06936 239 VATSIAEYFRD--QGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHH--cCCCEEEeccchh
Confidence 34555554 5899999999984
No 269
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.93 E-value=0.062 Score=48.91 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999876
No 270
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.92 E-value=0.0046 Score=54.04 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|+|.|..|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 271
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.90 E-value=0.018 Score=52.24 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
+.+..|.++||+|+||||..|.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 456688899999999999999998743
No 272
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.90 E-value=0.035 Score=47.50 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=50.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCcccc-CCCCceEEEEeCCCCC-------HHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVK-SRLPFKVWYSVGKNLD-------FSTAVQEIRNRRNEIPSSKRLLFALDDV 212 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~-------~~~i~~~l~~~l~~~l~~kr~LlVlDdv 212 (355)
..++-++|+.|+|||.||+.+.. .+. +.....+-+..+.--. +..+.......+. ....-+|+||++
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~---~~~~gVVllDEi 77 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVG---AEEGGVVLLDEI 77 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHH---HHHHTEEEEETG
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhcccceee---ccchhhhhhHHH
Confidence 46788999999999999999877 333 3333444455443222 1111110000000 001129999999
Q ss_pred CCCCh-----------hhHHHHHHhhcc
Q 036086 213 SHLND-----------DNLANLRLLVSD 229 (355)
Q Consensus 213 w~~~~-----------~~~~~l~~~l~~ 229 (355)
..... ..|..|...+..
T Consensus 78 dKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 78 DKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp GGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccchhhHHHHHHHHHHHhcc
Confidence 97777 888888887753
No 273
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.89 E-value=0.045 Score=48.73 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|.|||||.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999876
No 274
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.88 E-value=0.45 Score=44.52 Aligned_cols=133 Identities=11% Similarity=0.070 Sum_probs=81.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc---c---cc--CCCCceEEEEe-CCCCCHHHHHHHHHHHHhhcC-C-CCcEEEE
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD---D---VK--SRLPFKVWYSV-GKNLDFSTAVQEIRNRRNEIP-S-SKRLLFA 208 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~---~---~~--~~F~~~~wv~v-s~~~~~~~i~~~l~~~l~~~l-~-~kr~LlV 208 (355)
-.++.-++|..|.||+++|..+.+.- . +. .|=+-..++.. +....+.++. ++.+.+.-.- . +++=++|
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCCcccCCceEEE
Confidence 35678899999999999998875521 0 11 11112233322 2334444443 3444443222 2 5777888
Q ss_pred EeCCCCCChhhHHHHHHhhccCCCCCcEEEEec-CChhHhhhcccCCcccccCCCCChhhHHHHhhhh
Q 036086 209 LDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTT-HSTSVATMMMQTVPEAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 209 lDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTT-R~~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~ 275 (355)
+|++...+....+.+...+..-. .++.+|++| ....+... +.+....+++.++++++....+...
T Consensus 96 I~~~e~m~~~a~NaLLK~LEEPp-~~t~~il~~~~~~kll~T-I~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 96 IKNIEKTSNSLLNALLKTIEEPP-KDTYFLLTTKNINKVLPT-IVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred EecccccCHHHHHHHHHHhhCCC-CCeEEEEEeCChHhChHH-HHhCeEEEECCCCCHHHHHHHHHHc
Confidence 99987666667778887776655 566666555 44444433 3333378999999999988777654
No 275
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.079 Score=47.10 Aligned_cols=52 Identities=21% Similarity=0.155 Sum_probs=33.8
Q ss_pred CCcEEEEEeCCCCC-ChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhcccCC
Q 036086 202 SKRLLFALDDVSHL-NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQTV 254 (355)
Q Consensus 202 ~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~~ 254 (355)
-++-|.|||...+. +.+.+..+...+..-...|+-+++.|+.+.++.. ..+.
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~-i~pD 213 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDY-IKPD 213 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhh-cCCC
Confidence 35679999998742 3444444444333321156779999999999988 7655
No 276
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.055 Score=52.06 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-.++.++|+.|+||||++.++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 277
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.86 E-value=0.0084 Score=56.54 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHH
Q 036086 128 DSVKNALLRDGNTVRFIHIVGVSGTDETAIAHR 160 (355)
Q Consensus 128 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~ 160 (355)
.--+++|+ ++.+..|++.|.+|.|||.||-.
T Consensus 234 ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALa 264 (436)
T COG1875 234 RVALDLLL--DDDIDLVSLGGKAGTGKTLLALA 264 (436)
T ss_pred HHHHHHhc--CCCCCeEEeeccCCccHhHHHHH
Confidence 33456677 66789999999999999998864
No 278
>PF14516 AAA_35: AAA-like domain
Probab=95.85 E-value=0.19 Score=47.74 Aligned_cols=172 Identities=13% Similarity=0.052 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC----C-CCHHHHHH------------
Q 036086 128 DSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK----N-LDFSTAVQ------------ 190 (355)
Q Consensus 128 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~-~~~~~i~~------------ 190 (355)
+++.+.|.. .-..+.|.|+..+|||+|...+.+..+- ..+. .+++++.. . .+....++
T Consensus 21 ~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~-~~~~-~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l 95 (331)
T PF14516_consen 21 QECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQ-QGYR-CVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKL 95 (331)
T ss_pred HHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHH-CCCE-EEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCC
Confidence 334444443 2357899999999999999998874322 2333 34666543 1 23444444
Q ss_pred ----------------HHHHHHhhc-C--CCCcEEEEEeCCCCCC--h----hhHHHHHHhhccCCC--C-CcEEEEecC
Q 036086 191 ----------------EIRNRRNEI-P--SSKRLLFALDDVSHLN--D----DNLANLRLLVSDMRL--V-GFYVLVTTH 242 (355)
Q Consensus 191 ----------------~l~~~l~~~-l--~~kr~LlVlDdvw~~~--~----~~~~~l~~~l~~~~~--~-gs~IlvTTR 242 (355)
.....+.+. + .+++.+|++|+|..-- . +.|..|+.-...... . .+=.++...
T Consensus 96 ~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~ 175 (331)
T PF14516_consen 96 DEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAG 175 (331)
T ss_pred ChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEec
Confidence 122222222 1 2589999999996321 1 222223222211110 0 111122222
Q ss_pred Ch--hHhhhc----ccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHHHHHHhhc
Q 036086 243 ST--SVATMM----MQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLTQFLLDID 311 (355)
Q Consensus 243 ~~--~va~~~----~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~~~~~~~~ 311 (355)
+. ...... +.- ...+.|.+++.+|...|....-.. -.. .....+...+||-|--++.+...+
T Consensus 176 ~t~~~~~~~~~~SPFNI-g~~i~L~~Ft~~ev~~L~~~~~~~--~~~----~~~~~l~~~tgGhP~Lv~~~~~~l 243 (331)
T PF14516_consen 176 STEDYIILDINQSPFNI-GQPIELPDFTPEEVQELAQRYGLE--FSQ----EQLEQLMDWTGGHPYLVQKACYLL 243 (331)
T ss_pred CcccccccCCCCCCccc-ccceeCCCCCHHHHHHHHHhhhcc--CCH----HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 111110 111 257889999999999998876321 111 127778899999997765555433
No 279
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=95.85 E-value=0.13 Score=48.09 Aligned_cols=42 Identities=10% Similarity=0.228 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
+...-++...|-+.+.....|.++|.+|+||||+...+....
T Consensus 21 q~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 21 QTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred HHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444444444445455678999999999999999988753
No 280
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=0.12 Score=50.46 Aligned_cols=183 Identities=17% Similarity=0.158 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----------
Q 036086 124 ESSVDSVKNALLRD--GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ----------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~----------- 190 (355)
+.++..+.+|+... ....+-+=|.|-+|.|||.+...++.+..-...=.+++++....--....++.
T Consensus 156 e~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~ 235 (529)
T KOG2227|consen 156 ELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLV 235 (529)
T ss_pred HHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhc
Confidence 77788888888765 44566778899999999999999998542211112334443322122222322
Q ss_pred ------HHHHHHhhcCCCC--cEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC--h-----hHhhhc--ccC
Q 036086 191 ------EIRNRRNEIPSSK--RLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS--T-----SVATMM--MQT 253 (355)
Q Consensus 191 ------~l~~~l~~~l~~k--r~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~--~-----~va~~~--~~~ 253 (355)
+..+.+.....+. -+|+|||....-....-..+...|.+...++|++|+.--- - -..... .+.
T Consensus 236 s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~ 315 (529)
T KOG2227|consen 236 SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTI 315 (529)
T ss_pred CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCC
Confidence 3455555555543 5899999875211111111222232222145665543210 0 111110 111
Q ss_pred CcccccCCCCChhhHHHHhhhhCCCCCC---CcchHHHHHHHHHHhcCCCchHHHH
Q 036086 254 VPEAEHLIYFSESNSWSNLNCELPPSSQ---EAHRVEDLETGSAMDEEGVTSLTQF 306 (355)
Q Consensus 254 ~~~~~~l~~L~~~~s~~Lf~~~af~~~~---~~~~~~~~~~~i~~~c~GlPla~~~ 306 (355)
.+..+...|.+.++-.++|+.+.-.... .+..++-.+++.+.-.|-+--|..+
T Consensus 316 ~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv 371 (529)
T KOG2227|consen 316 KPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDV 371 (529)
T ss_pred CCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHH
Confidence 2357888999999999999988632211 1223444444444444555555543
No 281
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.12 Score=46.28 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=30.0
Q ss_pred CCCCcEEEEEeCCCCC-ChhhHHHHHHhhccCCCCCcEEEEecCChhHhh
Q 036086 200 PSSKRLLFALDDVSHL-NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 200 l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~ 248 (355)
+-.++-+++||.-... +......+...+.... .|..||++|++.....
T Consensus 152 L~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~ 200 (236)
T cd03253 152 ILKNPPILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLSTIV 200 (236)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHH
Confidence 3446779999997632 3444445555554434 3556888888877664
No 282
>PRK03839 putative kinase; Provisional
Probab=95.84 E-value=0.0063 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 283
>PRK09354 recA recombinase A; Provisional
Probab=95.84 E-value=0.02 Score=54.41 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=45.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----------------HHHHHHhhcCC-
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-----------------EIRNRRNEIPS- 201 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-----------------~l~~~l~~~l~- 201 (355)
.-+++-|+|+.|+||||||.++... ....=...+|+..-..++...... +....+...++
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 3468889999999999999987652 222334566777666655543222 22333333332
Q ss_pred CCcEEEEEeCCC
Q 036086 202 SKRLLFALDDVS 213 (355)
Q Consensus 202 ~kr~LlVlDdvw 213 (355)
++--+||+|.|-
T Consensus 137 ~~~~lIVIDSva 148 (349)
T PRK09354 137 GAVDLIVVDSVA 148 (349)
T ss_pred CCCCEEEEeChh
Confidence 456799999985
No 284
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.82 E-value=0.086 Score=46.74 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999875
No 285
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.82 E-value=0.0051 Score=54.91 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|+|.|..|+||||||+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 286
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.81 E-value=0.031 Score=51.33 Aligned_cols=78 Identities=21% Similarity=0.307 Sum_probs=46.3
Q ss_pred EEEEEEcCCCccHHHHH-HHHhcCccccCCCCce-EEEEeCCCCC-HHHHHH----------------------------
Q 036086 142 RFIHIVGVSGTDETAIA-HRVFTDDDVKSRLPFK-VWYSVGKNLD-FSTAVQ---------------------------- 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~~-~~~i~~---------------------------- 190 (355)
.-++|+|..|+|||+|| ..+.+.. +-+.. +++-+.+... +.++.+
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 35899999999999995 5665421 22333 4555555433 223322
Q ss_pred -----HHHHHHhhcCCCCcEEEEEeCCCCCChhhHHHHHHh
Q 036086 191 -----EIRNRRNEIPSSKRLLFALDDVSHLNDDNLANLRLL 226 (355)
Q Consensus 191 -----~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~ 226 (355)
.+.+.++. +++..||++||+-. -...|.++...
T Consensus 146 ~~~a~aiAE~fr~--~G~~Vlvl~DslTr-~A~A~rEisl~ 183 (274)
T cd01132 146 PYTGCAMGEYFMD--NGKHALIIYDDLSK-QAVAYRQMSLL 183 (274)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEEcChHH-HHHHHHHHHHh
Confidence 44555555 48899999999852 12344554433
No 287
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.79 E-value=0.049 Score=53.06 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++.++|++|+||||++.++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999875
No 288
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.78 E-value=0.0095 Score=54.87 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=33.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEE-----eCC-CC---CHHHHHH-HHHHHHhhcCCCCcEEEEEeC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYS-----VGK-NL---DFSTAVQ-EIRNRRNEIPSSKRLLFALDD 211 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-----vs~-~~---~~~~i~~-~l~~~l~~~l~~kr~LlVlDd 211 (355)
+.|.|+|.+|+||||+|+.+.....- ...+ ..+|+ +.. .+ ..++-.+ .+...+.+.|. +..+||+||
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~-~~~~-v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd 78 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE-KGKE-VVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDD 78 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH-TT---EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh-cCCE-EEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeC
Confidence 57899999999999999998773211 1111 12222 011 11 1122222 44445555553 458999999
Q ss_pred CC
Q 036086 212 VS 213 (355)
Q Consensus 212 vw 213 (355)
.-
T Consensus 79 ~n 80 (270)
T PF08433_consen 79 NN 80 (270)
T ss_dssp --
T ss_pred Cc
Confidence 75
No 289
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.78 E-value=0.071 Score=50.06 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|.|||||.+.+..
T Consensus 34 ei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999976
No 290
>PHA02244 ATPase-like protein
Probab=95.77 E-value=0.043 Score=52.46 Aligned_cols=107 Identities=13% Similarity=0.205 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHH---H---HHH-HHH
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAV---Q---EIR-NRR 196 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~---~---~l~-~~l 196 (355)
......+..++.. +.+ |-++|+.|+|||+||+.+... .... |+.++...+...+. . ... ..+
T Consensus 106 ~~~~~ri~r~l~~---~~P-VLL~GppGtGKTtLA~aLA~~--lg~p-----fv~In~l~d~~~L~G~i~~~g~~~dgpL 174 (383)
T PHA02244 106 HYETADIAKIVNA---NIP-VFLKGGAGSGKNHIAEQIAEA--LDLD-----FYFMNAIMDEFELKGFIDANGKFHETPF 174 (383)
T ss_pred HHHHHHHHHHHhc---CCC-EEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecChHHHhhcccccccccccchHH
Confidence 5556666666653 223 567999999999999999873 2222 33333211111110 0 000 001
Q ss_pred hhcCCCCcEEEEEeCCCCCChhhHHHHHHhhcc-----------CCCCCcEEEEecCC
Q 036086 197 NEIPSSKRLLFALDDVSHLNDDNLANLRLLVSD-----------MRLVGFYVLVTTHS 243 (355)
Q Consensus 197 ~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-----------~~~~gs~IlvTTR~ 243 (355)
.... .+--+++||++.....+....|...+.. .. ++.++|+|+..
T Consensus 175 l~A~-~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h-~~FRlIATsN~ 230 (383)
T PHA02244 175 YEAF-KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAH-EDFRVISAGNT 230 (383)
T ss_pred HHHh-hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecC-CCEEEEEeeCC
Confidence 1111 2346999999986556555555554421 12 45678887764
No 291
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.76 E-value=0.07 Score=45.07 Aligned_cols=107 Identities=17% Similarity=0.114 Sum_probs=56.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc-----------cccCCCCceEEE----EeCCCCCHHHHHH-HHHHHHhhcCCCCcE
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD-----------DVKSRLPFKVWY----SVGKNLDFSTAVQ-EIRNRRNEIPSSKRL 205 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~-----------~~~~~F~~~~wv----~vs~~~~~~~i~~-~l~~~l~~~l~~kr~ 205 (355)
++..|+|+.|.||||+.+.+.--. .++..+..-.|- ..+...+.-...+ .+...+...-.+++-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 589999999999999998862100 001112111221 1111111111111 333334322224788
Q ss_pred EEEEeCCCCC-ChhhHHHHHHhhccC-CCCCcEEEEecCChhHhhh
Q 036086 206 LFALDDVSHL-NDDNLANLRLLVSDM-RLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 206 LlVlDdvw~~-~~~~~~~l~~~l~~~-~~~gs~IlvTTR~~~va~~ 249 (355)
++++|+.-.. +...-..+...+... . .|+.+|+||.+.+.+..
T Consensus 102 llllDEp~~gld~~~~~~l~~~l~~~~~-~~~~vii~TH~~~~~~~ 146 (162)
T cd03227 102 LYILDEIDRGLDPRDGQALAEAILEHLV-KGAQVIVITHLPELAEL 146 (162)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHh
Confidence 9999998642 333333343333322 2 35789999999888765
No 292
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.75 E-value=0.041 Score=49.39 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=27.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKN 182 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 182 (355)
.-+++.|+|.+|+|||||+.++... .+++. ...+|++..++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~g-~~~~y~~~e~~ 64 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYG-ALKQG-KKVYVITTENT 64 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH-HHhCC-CEEEEEEcCCC
Confidence 3568899999999999999997432 12221 24556666543
No 293
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.74 E-value=0.036 Score=54.13 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=44.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccC-------------------CC------CceEEEEeCCCCCHHHHHH-----
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKS-------------------RL------PFKVWYSVGKNLDFSTAVQ----- 190 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~-------------------~F------~~~~wv~vs~~~~~~~i~~----- 190 (355)
-..++|+|..|+|||||.+.+.+...... .+ ...+++.-++.+.......
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~ 216 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTAT 216 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHH
Confidence 35789999999999999998876321100 01 1223444444433333332
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 ~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.+++ +++..|+++||+-
T Consensus 217 tiAEyfr~--~G~~Vll~~Dslt 237 (413)
T TIGR03497 217 AIAEYFRD--QGKDVLLMMDSVT 237 (413)
T ss_pred HHHHHHHH--CCCCEEEEEcCcH
Confidence 45555554 4899999999984
No 294
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.73 E-value=0.058 Score=49.98 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=23.7
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+..++.|+|..|+|||||...+.+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999998887
No 295
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.051 Score=54.24 Aligned_cols=147 Identities=15% Similarity=0.109 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc----CCCCceEEEE----eCCCCCHHHHHH------HH
Q 036086 127 VDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK----SRLPFKVWYS----VGKNLDFSTAVQ------EI 192 (355)
Q Consensus 127 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~----vs~~~~~~~i~~------~l 192 (355)
+..|.+.+..+ .-..-.-..|+.|+||||+|+.+..--... ..+-..+-.| -+...|+.++-. +-
T Consensus 25 ~~~L~nal~~~-ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVdd 103 (515)
T COG2812 25 VKTLSNALENG-RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDD 103 (515)
T ss_pred HHHHHHHHHhC-cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHH
Confidence 34444444432 223345567999999999998775322111 1111112221 112233333322 22
Q ss_pred HHHHhhcC-----CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcE-EEEecCChhHhhhcccCCcccccCCCCChh
Q 036086 193 RNRRNEIP-----SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFY-VLVTTHSTSVATMMMQTVPEAEHLIYFSES 266 (355)
Q Consensus 193 ~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~-IlvTTR~~~va~~~~~~~~~~~~l~~L~~~ 266 (355)
.+.+.+.. +++-=..|+|.|...+...|+.++..+..-. ..-+ |+.||-.+.+... +-+..+.|.++.|+.+
T Consensus 104 iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP-~hV~FIlATTe~~Kip~T-IlSRcq~f~fkri~~~ 181 (515)
T COG2812 104 IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPP-SHVKFILATTEPQKIPNT-ILSRCQRFDFKRLDLE 181 (515)
T ss_pred HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCc-cCeEEEEecCCcCcCchh-hhhccccccccCCCHH
Confidence 22232222 3444578899999888899999988775543 3333 5667776777665 3333378999999999
Q ss_pred hHHHHhhhhC
Q 036086 267 NSWSNLNCEL 276 (355)
Q Consensus 267 ~s~~Lf~~~a 276 (355)
+-...+...+
T Consensus 182 ~I~~~L~~i~ 191 (515)
T COG2812 182 EIAKHLAAIL 191 (515)
T ss_pred HHHHHHHHHH
Confidence 8877776654
No 296
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.73 E-value=0.0078 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998763
No 297
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.72 E-value=0.037 Score=54.93 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=47.0
Q ss_pred EEEEEEcCCCccHHHHH-HHHhcCccc-----cCCCCceEEEEeCCCCCHH-HHHH------------------------
Q 036086 142 RFIHIVGVSGTDETAIA-HRVFTDDDV-----KSRLPFKVWYSVGKNLDFS-TAVQ------------------------ 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~-~i~~------------------------ 190 (355)
.-++|.|-.|+|||+|| -.|.|...+ .++-...+++.+++..... .+.+
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 35789999999999997 556664322 1233566788888765432 3222
Q ss_pred ---------HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 ---------EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 ---------~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +++..|+|+||+-
T Consensus 270 r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLT 299 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMN--RGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCEEEEEcCch
Confidence 34455553 5899999999984
No 298
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.13 Score=49.77 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|.++|+.|+||||.+..+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988875
No 299
>PHA02774 E1; Provisional
Probab=95.71 E-value=0.049 Score=54.88 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEE
Q 036086 127 VDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLL 206 (355)
Q Consensus 127 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~L 206 (355)
...+..||. ..++..-+.|+|++|.|||.+|..+.+- .. -....||.....|-+. .+.+.+ +
T Consensus 421 l~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~--L~--G~vi~fvN~~s~FwLq------------pl~d~k-i 482 (613)
T PHA02774 421 LTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKF--LK--GKVISFVNSKSHFWLQ------------PLADAK-I 482 (613)
T ss_pred HHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHH--hC--CCEEEEEECccccccc------------hhccCC-E
Confidence 344555543 2344567899999999999999998872 21 1223466654444321 233444 6
Q ss_pred EEEeCC
Q 036086 207 FALDDV 212 (355)
Q Consensus 207 lVlDdv 212 (355)
+||||+
T Consensus 483 ~vlDD~ 488 (613)
T PHA02774 483 ALLDDA 488 (613)
T ss_pred EEEecC
Confidence 999998
No 300
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.71 E-value=0.0093 Score=52.65 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=25.3
Q ss_pred HHhcCCCCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 133 ALLRDGNTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 133 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
|+..+.....+|.|+|++|+|||||++.+.+.
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34444456788999999999999999998763
No 301
>PRK04040 adenylate kinase; Provisional
Probab=95.71 E-value=0.0081 Score=52.25 Aligned_cols=23 Identities=17% Similarity=0.549 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|.|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999877
No 302
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.70 E-value=0.017 Score=56.63 Aligned_cols=71 Identities=10% Similarity=0.147 Sum_probs=48.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCH-HHHHH-----------------------------H
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDF-STAVQ-----------------------------E 191 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~i~~-----------------------------~ 191 (355)
.-++|+|.+|+|||+|+.++..... +.+-+..+++-+.+.... .++++ .
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 4589999999999999999876432 233467888888765543 33333 2
Q ss_pred HHHHHhhcC---CCCcEEEEEeCCC
Q 036086 192 IRNRRNEIP---SSKRLLFALDDVS 213 (355)
Q Consensus 192 l~~~l~~~l---~~kr~LlVlDdvw 213 (355)
..-.+.+++ +++..|+++||+-
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChH
Confidence 223344443 4689999999984
No 303
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.70 E-value=0.0084 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
++|.|+|+.|+|||||++.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999987
No 304
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.69 E-value=0.029 Score=56.42 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=42.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCcccc-CCCCceEEE-EeCCCCCHH-HHHH--------------------------HH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVK-SRLPFKVWY-SVGKNLDFS-TAVQ--------------------------EI 192 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv-~vs~~~~~~-~i~~--------------------------~l 192 (355)
.-..|+|..|+|||||++.|.+ .+. .+-++.++| -|.+..... ++.+ .+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999988 232 233444433 333322211 1111 34
Q ss_pred HHHHhhcCCCCcEEEEEeCCC
Q 036086 193 RNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 193 ~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.+ .++.+||++|++-
T Consensus 495 Ae~fre--~G~dVlillDSlT 513 (672)
T PRK12678 495 AKRLVE--LGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHH--cCCCEEEEEeCch
Confidence 444444 6899999999984
No 305
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.69 E-value=0.0094 Score=51.01 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++++|+|..|+|||||+..+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999886
No 306
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.69 E-value=0.052 Score=51.28 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..++|+|..|+|||||.+.+.+.
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~ 92 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARG 92 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 46899999999999999998863
No 307
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.68 E-value=0.069 Score=54.03 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-..++|+|+.|+|||||++.+..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999864
No 308
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.68 E-value=0.14 Score=43.49 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=54.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEE-------EeCCCC-----CHHHHH---H--------HHHHHHhh
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWY-------SVGKNL-----DFSTAV---Q--------EIRNRRNE 198 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~-----~~~~i~---~--------~l~~~l~~ 198 (355)
.+++|+|..|.|||||++.+..-... ....+++ .+.+.+ ++.+-+ . ...-.+..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lar 104 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFAR 104 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874221 1111111 122222 222211 1 11222334
Q ss_pred cCCCCcEEEEEeCCCCC-ChhhHHHHHHhhccCCCCCcEEEEecCChhHhh
Q 036086 199 IPSSKRLLFALDDVSHL-NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 199 ~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~ 248 (355)
.+-.++=+++||.--.. +......+...+... +..||++|++.....
T Consensus 105 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~~ 152 (166)
T cd03223 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLWK 152 (166)
T ss_pred HHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHHh
Confidence 44556778889986421 333344444444332 345888888876543
No 309
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.68 E-value=0.049 Score=53.16 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=43.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHH------------------------------
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD-FSTAVQ------------------------------ 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~------------------------------ 190 (355)
..++|+|..|+|||||.+.+.+... -+..+.+.+..... +.++..
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~ 213 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAF 213 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999998886322 12333444444322 222222
Q ss_pred ---HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 ---EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 ---~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +++..|+++||+-
T Consensus 214 ~a~tiAEyfr~--~G~~Vll~~Dslt 237 (411)
T TIGR03496 214 YATAIAEYFRD--QGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHH--CCCCEEEEEeChH
Confidence 34555554 5899999999983
No 310
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.68 E-value=0.054 Score=54.11 Aligned_cols=128 Identities=18% Similarity=0.223 Sum_probs=67.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC----C-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL----D-FSTAVQEIRNRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~----~-~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~ 214 (355)
.++-|-++|++|+|||.+|+.+.+. ..-.| +-+..+.-+ . ... .+.+.+...-...+++|.+|++..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~l~~~~vGese~---~l~~~f~~A~~~~P~IL~IDEID~ 329 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGKLFGGIVGESES---RMRQMIRIAEALSPCILWIDEIDK 329 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHHhcccccChHHH---HHHHHHHHHHhcCCcEEEehhhhh
Confidence 3456789999999999999999883 22222 111111101 0 011 122222222234689999999852
Q ss_pred C--------Chhh----HHHHHHhhccCCCCCcEEEEecCChh-Hhhhcc--cCCcccccCCCCChhhHHHHhhhhC
Q 036086 215 L--------NDDN----LANLRLLVSDMRLVGFYVLVTTHSTS-VATMMM--QTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 215 ~--------~~~~----~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~--~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
. +... ...+...+.... .+--||.||...+ +-..+. |.-+..+.+..-+.++-.++|+.+.
T Consensus 330 ~~~~~~~~~d~~~~~rvl~~lL~~l~~~~-~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l 405 (489)
T CHL00195 330 AFSNSESKGDSGTTNRVLATFITWLSEKK-SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHL 405 (489)
T ss_pred hhccccCCCCchHHHHHHHHHHHHHhcCC-CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 1 0111 112222233223 3444566776543 211101 2223567888888888888887764
No 311
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.67 E-value=0.0086 Score=49.49 Aligned_cols=22 Identities=14% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
++|.|+|..|+|||||++.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999988
No 312
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.67 E-value=0.072 Score=46.69 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=55.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccc------------cCCCCceEEEEeCCCCCHH----HHHH---HHHHHHhhcCCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDV------------KSRLPFKVWYSVGKNLDFS----TAVQ---EIRNRRNEIPSS 202 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~------------~~~F~~~~wv~vs~~~~~~----~i~~---~l~~~l~~~l~~ 202 (355)
.++.|+|+.|.|||||.+.+....-. +-.+-..++......-++. .... ++...+.. ..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~--~~ 107 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSL--AT 107 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHh--cc
Confidence 68999999999999999998732110 0001112222222211111 1111 22222211 24
Q ss_pred CcEEEEEeCCCCC-ChhhH----HHHHHhhccCCCCCcEEEEecCChhHhhhccc
Q 036086 203 KRLLFALDDVSHL-NDDNL----ANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQ 252 (355)
Q Consensus 203 kr~LlVlDdvw~~-~~~~~----~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~ 252 (355)
.+-++++|..-.. +...- ..+...+. . .|+.||++|++.+++.. +.
T Consensus 108 ~~~llllDEp~~gld~~~~~~l~~~ll~~l~--~-~~~~vi~~tH~~~~~~~-~~ 158 (202)
T cd03243 108 PRSLVLIDELGRGTSTAEGLAIAYAVLEHLL--E-KGCRTLFATHFHELADL-PE 158 (202)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHHHH--h-cCCeEEEECChHHHHHH-hh
Confidence 7899999998532 21111 11222222 2 36679999999888776 54
No 313
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.66 E-value=0.22 Score=44.97 Aligned_cols=177 Identities=16% Similarity=0.174 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC-CCCHHHHHH------------
Q 036086 125 SSVDSVKNALLRD-GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK-NLDFSTAVQ------------ 190 (355)
Q Consensus 125 ~~~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~------------ 190 (355)
.+..+.+..+... .++-.++.++|.-|+|||++.+.+.....- +.++=|.++. ......+..
T Consensus 34 a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~ 109 (269)
T COG3267 34 ADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKV 109 (269)
T ss_pred hhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccc
Confidence 3444444445444 455678999999999999999954331110 1111133332 222222222
Q ss_pred -------HHHHHHhhcC-CCCc-EEEEEeCCCCCChhhHHHHHHhhccCCCCCc---EEEEecC--------ChhHhhhc
Q 036086 191 -------EIRNRRNEIP-SSKR-LLFALDDVSHLNDDNLANLRLLVSDMRLVGF---YVLVTTH--------STSVATMM 250 (355)
Q Consensus 191 -------~l~~~l~~~l-~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs---~IlvTTR--------~~~va~~~ 250 (355)
.+...+.... +++| ..++.|+....+.+..+.++....-.. .+| +|+..-. -.....
T Consensus 110 ~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~-~~~~~l~ivL~Gqp~L~~~lr~~~l~e-- 186 (269)
T COG3267 110 NVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEE-DSSKLLSIVLIGQPKLRPRLRLPVLRE-- 186 (269)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcc-cccCceeeeecCCcccchhhchHHHHh--
Confidence 2333333333 5777 899999998777777777654433222 222 2333221 111111
Q ss_pred ccCCccc-ccCCCCChhhHHHHhhhhCCCCC-CCcchHHHHHHHHHHhcCCCchHHHHHH
Q 036086 251 MQTVPEA-EHLIYFSESNSWSNLNCELPPSS-QEAHRVEDLETGSAMDEEGVTSLTQFLL 308 (355)
Q Consensus 251 ~~~~~~~-~~l~~L~~~~s~~Lf~~~af~~~-~~~~~~~~~~~~i~~~c~GlPla~~~~~ 308 (355)
.+....+ |.+.|++.++....+..+.-+.. +.+---.+....|..+..|.|.++..+.
T Consensus 187 ~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 187 LEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred hhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 1111134 89999999977666655532221 2222234556677889999998885543
No 314
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.65 E-value=0.0084 Score=50.81 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...|.++|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999887
No 315
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.65 E-value=0.13 Score=45.31 Aligned_cols=106 Identities=11% Similarity=0.096 Sum_probs=57.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc---ccc----------CCCCceEEEEeCCCCCHH----HHHH---HHHHHHhhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD---DVK----------SRLPFKVWYSVGKNLDFS----TAVQ---EIRNRRNEIP 200 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~---~~~----------~~F~~~~wv~vs~~~~~~----~i~~---~l~~~l~~~l 200 (355)
..++.|.|+.|.||||+.+.+.... ++. ..|+. +...+...-+.. .... ++...+. +
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~-I~~~~~~~d~~~~~~S~fs~e~~~~~~il~--~ 105 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNR-LLSRLSNDDSMERNLSTFASEMSETAYILD--Y 105 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhh-eeEecCCccccchhhhHHHHHHHHHHHHHH--h
Confidence 3789999999999999988875211 000 11111 222222221111 1111 2222222 2
Q ss_pred CCCcEEEEEeCCCCC-ChhhH----HHHHHhhccCCCCCcEEEEecCChhHhhhcccC
Q 036086 201 SSKRLLFALDDVSHL-NDDNL----ANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQT 253 (355)
Q Consensus 201 ~~kr~LlVlDdvw~~-~~~~~----~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~ 253 (355)
..++-|+++|..-.. +..+- ..+...+.. .|+.+|++|...+++.. +..
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~---~~~~~i~~TH~~~l~~~-~~~ 159 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIK---KESTVFFATHFRDIAAI-LGN 159 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh---cCCEEEEECChHHHHHH-hhc
Confidence 356789999998532 23221 122333332 46789999999998887 553
No 316
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.64 E-value=0.007 Score=52.57 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 317
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.64 E-value=0.066 Score=54.84 Aligned_cols=84 Identities=14% Similarity=0.219 Sum_probs=54.4
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh--hcCC--CCcEEEEEeCCCC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRN--EIPS--SKRLLFALDDVSH 214 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~--~~l~--~kr~LlVlDdvw~ 214 (355)
..-++.-++|++|+||||||.-|..+. .|. ++=+..|+.-....+-..+...++ ..+. +++..||+|.+.-
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GYs-VvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GYS-VVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cce-EEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 345789999999999999999988743 222 345677776666665554444333 3443 6788899999974
Q ss_pred CChhhHHHHHHhh
Q 036086 215 LNDDNLANLRLLV 227 (355)
Q Consensus 215 ~~~~~~~~l~~~l 227 (355)
......+.|...+
T Consensus 399 a~~~~Vdvilslv 411 (877)
T KOG1969|consen 399 APRAAVDVILSLV 411 (877)
T ss_pred CcHHHHHHHHHHH
Confidence 3333344444443
No 318
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.63 E-value=0.071 Score=55.32 Aligned_cols=125 Identities=14% Similarity=0.212 Sum_probs=65.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----HHHHHHhhcCCCCcEEEEEeCCCCC--
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-----EIRNRRNEIPSSKRLLFALDDVSHL-- 215 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-----~l~~~l~~~l~~kr~LlVlDdvw~~-- 215 (355)
-|.++|++|+||||+|+.+.+. ..-+| +.++.. +...... .+...+.......+++|++|++..-
T Consensus 187 gill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~-~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS-DFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH-HhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhh
Confidence 4889999999999999999873 32233 222211 0111110 2222333333456799999998631
Q ss_pred --------ChhhHHH----HHHhhcc--CCCCCcEEEEecCChhHhhhc-c--cCCcccccCCCCChhhHHHHhhhhC
Q 036086 216 --------NDDNLAN----LRLLVSD--MRLVGFYVLVTTHSTSVATMM-M--QTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 216 --------~~~~~~~----l~~~l~~--~~~~gs~IlvTTR~~~va~~~-~--~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
....+.. +...+.. .+ .+--||.||...+..... . +.-+..+.+...+.++-.+++..+.
T Consensus 259 ~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~-~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred ccCCCCCCCchHHHHHHHHHHHhhhcccCC-CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 0112222 2222221 12 344455577665532220 1 1123567787777777777777654
No 319
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.60 E-value=0.031 Score=51.85 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...++.++|++|+||||++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 320
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.59 E-value=0.0078 Score=51.91 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 321
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.57 E-value=0.028 Score=55.39 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=43.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHH-----------------------------H
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD-FSTAVQ-----------------------------E 191 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~-----------------------------~ 191 (355)
.-++|+|..|+|||||+.++...... ++=+..+++-+.+... +.+++. .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 45899999999999999887542211 1113455565554432 223332 2
Q ss_pred HHHHHhhcC---CCCcEEEEEeCCC
Q 036086 192 IRNRRNEIP---SSKRLLFALDDVS 213 (355)
Q Consensus 192 l~~~l~~~l---~~kr~LlVlDdvw 213 (355)
..-.+.+++ +++.+|+++||+-
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchH
Confidence 222334443 6899999999983
No 322
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.56 E-value=0.13 Score=43.94 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=51.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC-CCCHHHHHHHHHHHHhhcCC----------------CCcE
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK-NLDFSTAVQEIRNRRNEIPS----------------SKRL 205 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~l~~~l~~~l~----------------~kr~ 205 (355)
-|-|+|..|+||+.+|+.+++...- ...-||.+.- .++...+. ..|...-+ -..=
T Consensus 24 pVlI~GE~GtGK~~lA~~IH~~s~r----~~~pfi~vnc~~~~~~~~e----~~LFG~~~~~~~~~~~~~~G~l~~A~~G 95 (168)
T PF00158_consen 24 PVLITGETGTGKELLARAIHNNSPR----KNGPFISVNCAALPEELLE----SELFGHEKGAFTGARSDKKGLLEQANGG 95 (168)
T ss_dssp -EEEECSTTSSHHHHHHHHHHCSTT----TTS-EEEEETTTS-HHHHH----HHHHEBCSSSSTTTSSEBEHHHHHTTTS
T ss_pred CEEEEcCCCCcHHHHHHHHHHhhhc----ccCCeEEEehhhhhcchhh----hhhhccccccccccccccCCceeeccce
Confidence 3559999999999999999983211 1223455443 22322222 12211111 1233
Q ss_pred EEEEeCCCCCChhhHHHHHHhhccC------CC----CCcEEEEecCCh
Q 036086 206 LFALDDVSHLNDDNLANLRLLVSDM------RL----VGFYVLVTTHST 244 (355)
Q Consensus 206 LlVlDdvw~~~~~~~~~l~~~l~~~------~~----~gs~IlvTTR~~ 244 (355)
-|+||+|..-....-..|...+..+ .. ...|||.||...
T Consensus 96 tL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 96 TLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp EEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred EEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 6889999876666666676666532 10 145788887753
No 323
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.54 E-value=0.025 Score=53.25 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=34.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 190 (355)
+++-|+|+.|+||||||..+.. .....-...+|+.....++......
T Consensus 54 ~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a~~ 100 (322)
T PF00154_consen 54 RIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYAES 100 (322)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHHHH
T ss_pred ceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHHHh
Confidence 5899999999999999998886 3333345677999988888866654
No 324
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.53 E-value=0.06 Score=52.97 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++|+|..|+|||||++.+.+
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g 190 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTR 190 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999876
No 325
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.52 E-value=0.11 Score=45.48 Aligned_cols=105 Identities=16% Similarity=0.250 Sum_probs=57.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc--c-ccC----------CCC------ceEEEEeCCC------CCHHHHHH------
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD--D-VKS----------RLP------FKVWYSVGKN------LDFSTAVQ------ 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~--~-~~~----------~F~------~~~wv~vs~~------~~~~~i~~------ 190 (355)
.+++|+|..|.|||||.+.+.... . ... .++ ..+++ +.+. ..+...++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~l~~~~~~L 105 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL-AFQYPPEIPGVKNADFLRYVNEGF 105 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE-eecChhhccCccHHHHHhhccccC
Confidence 589999999999999999988752 0 000 000 11221 2222 12222222
Q ss_pred ----HHHHHHhhcCCCCcEEEEEeCCCCC-ChhhHHHHHHhhccC-CCCCcEEEEecCChhHhh
Q 036086 191 ----EIRNRRNEIPSSKRLLFALDDVSHL-NDDNLANLRLLVSDM-RLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 191 ----~l~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~~gs~IlvTTR~~~va~ 248 (355)
...-.+...+-.++-+++||+--.. +......+...+..- . .|..||++|++...+.
T Consensus 106 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~~~ 168 (200)
T cd03217 106 SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLD 168 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHH
Confidence 1222344445567789999997532 333344443333321 2 3567888888877655
No 326
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.51 E-value=0.0084 Score=51.56 Aligned_cols=21 Identities=10% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 327
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.056 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+.|-+.|.+|+||||+|+.+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4577889999999999998876
No 328
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.48 E-value=0.07 Score=50.35 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=35.2
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHH
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDDVKS----RLPFKVWYSVGKNLDFSTAV 189 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~ 189 (355)
..-.++-|+|.+|+|||||+..+........ .-...+|++-...|+...+.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~ 148 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL 148 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHH
Confidence 3467899999999999999998764222111 11245788887777776554
No 329
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.47 E-value=0.022 Score=46.55 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
++.+++-+.|...-..-.+|.+.|.-|.|||||++.+....
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45555655555432233589999999999999999998743
No 330
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.46 E-value=0.013 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..+|.|+|++|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998873
No 331
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.45 E-value=0.019 Score=57.94 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=27.0
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 130 VKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 130 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+.|....+++.+|+|.|..|+||||||+.+..
T Consensus 54 a~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 54 ACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 3344444455688999999999999999999976
No 332
>PRK06820 type III secretion system ATPase; Validated
Probab=95.45 E-value=0.052 Score=53.28 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..++|+|..|+|||||++.+...
T Consensus 164 qri~I~G~sG~GKStLl~~I~~~ 186 (440)
T PRK06820 164 QRIGIFAAAGVGKSTLLGMLCAD 186 (440)
T ss_pred CEEEEECCCCCChHHHHHHHhcc
Confidence 36899999999999999998863
No 333
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.45 E-value=0.0098 Score=48.87 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|.|+|..|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 334
>PRK06217 hypothetical protein; Validated
Probab=95.45 E-value=0.01 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCc
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.|.|.|.+|+||||||+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998743
No 335
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.44 E-value=0.011 Score=51.88 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-.+|+|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999873
No 336
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.43 E-value=0.012 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHhcCcc
Q 036086 144 IHIVGVSGTDETAIAHRVFTDDD 166 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~~ 166 (355)
|.|+|..|+|||||.+.+.+.+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999987553
No 337
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.43 E-value=0.014 Score=51.04 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.1
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.....+|.|+|++|+||||||+.+..
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45677999999999999999999876
No 338
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.43 E-value=0.046 Score=57.63 Aligned_cols=127 Identities=13% Similarity=0.151 Sum_probs=63.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCC-----CCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKN-----LDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHL 215 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~ 215 (355)
.+-+.++|++|+||||||+.+.+. ...+| +.++.. +.- .....+...+.........+|+||++...
T Consensus 212 ~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~~i~~~~~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l 283 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGPEIMSKYYG-ESEERLREIFKEAEENAPSIIFIDEIDAI 283 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecHHHhccccc-HHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 356789999999999999999873 32222 222211 100 00112233333333456789999998521
Q ss_pred C-----------hhhHHHHHHhhccCCCCCcEEEE-ecCChh-Hhhhc--ccCCcccccCCCCChhhHHHHhhhh
Q 036086 216 N-----------DDNLANLRLLVSDMRLVGFYVLV-TTHSTS-VATMM--MQTVPEAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 216 ~-----------~~~~~~l~~~l~~~~~~gs~Ilv-TTR~~~-va~~~--~~~~~~~~~l~~L~~~~s~~Lf~~~ 275 (355)
. ......+...+..-...+.-+++ ||.... +-..+ .+.-...+.+...+.++-.++++..
T Consensus 284 ~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~ 358 (733)
T TIGR01243 284 APKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVH 358 (733)
T ss_pred cccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHH
Confidence 0 11223333333322202333444 444332 21110 1111245677777877777777644
No 339
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.41 E-value=0.012 Score=48.41 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999873
No 340
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.40 E-value=0.074 Score=52.39 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.-..++|+|..|+|||||++.+.+
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~ 180 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIAR 180 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999998875
No 341
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.40 E-value=0.13 Score=47.46 Aligned_cols=22 Identities=9% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~g 52 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLR 52 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4799999999999999999975
No 342
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.40 E-value=0.11 Score=46.51 Aligned_cols=104 Identities=15% Similarity=0.072 Sum_probs=58.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCcc------------cc-CCCCceEEEEeCCCCCHHH----HHH---HHHHHHhhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDD------------VK-SRLPFKVWYSVGKNLDFST----AVQ---EIRNRRNEIP 200 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~------------~~-~~F~~~~wv~vs~~~~~~~----i~~---~l~~~l~~~l 200 (355)
-.++.|.|+.|.||||+.+.+....- .+ ..|+ .++..+...-++.. ... ++...+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~-~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~-- 107 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFD-SVLTRMGASDSIQHGMSTFMVELSETSHILSN-- 107 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccc-eEEEEecCccccccccchHHHHHHHHHHHHHh--
Confidence 45789999999999999988765210 01 1121 23344433322221 111 33343433
Q ss_pred CCCcEEEEEeCCCCCC----hhh-HHHHHHhhccCCCCCcEEEEecCChhHhhh
Q 036086 201 SSKRLLFALDDVSHLN----DDN-LANLRLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 201 ~~kr~LlVlDdvw~~~----~~~-~~~l~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
.+++-|++||..-... ... -..+...+... .++.+|++|+..+++..
T Consensus 108 ~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~--~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 108 CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE--KKCLVLFVTHYPSLGEI 159 (222)
T ss_pred CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc--cCCeEEEEcccHHHHHH
Confidence 2568999999975321 111 11233333332 37889999999998775
No 343
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.37 E-value=0.056 Score=53.08 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+.++.++|..|+||||.+..+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999766654
No 344
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.37 E-value=0.014 Score=50.44 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=26.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEE
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWY 177 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 177 (355)
.++|.|+|+.|+|||||++.+.. ...++|...++.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceee
Confidence 36789999999999999999988 445566433333
No 345
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.36 E-value=0.14 Score=51.46 Aligned_cols=23 Identities=13% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+++|+|..|+|||||.+.+..-
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 47999999999999999999863
No 346
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.056 Score=54.71 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=80.3
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCce-------EEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFK-------VWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDD 211 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~-------~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDd 211 (355)
..++=|-.+|++|+||||+|+.+.+ ...-.|=.+ .||.-| +. .+.+.+++.-+--.++|.||.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nFlsvkgpEL~sk~vGeS-----Er---~ir~iF~kAR~~aP~IiFfDE 535 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALAN--EAGMNFLSVKGPELFSKYVGES-----ER---AIREVFRKARQVAPCIIFFDE 535 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhh--hhcCCeeeccCHHHHHHhcCch-----HH---HHHHHHHHHhhcCCeEEehhh
Confidence 4566788999999999999999999 444444211 133211 11 223333333334568999998
Q ss_pred CCCC-----------ChhhHHHHHHhhccCCCCCcEEEE---ecCChhHhhhcccC--CcccccCCCCChhhHHHHhhhh
Q 036086 212 VSHL-----------NDDNLANLRLLVSDMRLVGFYVLV---TTHSTSVATMMMQT--VPEAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 212 vw~~-----------~~~~~~~l~~~l~~~~~~gs~Ilv---TTR~~~va~~~~~~--~~~~~~l~~L~~~~s~~Lf~~~ 275 (355)
+..- ....+..|+.-+.... ....|+| |.|-..+-..++.+ -+..+.+.+-+.+--.++|+.+
T Consensus 536 iDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e-~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~ 614 (693)
T KOG0730|consen 536 IDALAGSRGGSSSGVTDRVLSQLLTEMDGLE-ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQC 614 (693)
T ss_pred HHhHhhccCCCccchHHHHHHHHHHHccccc-ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHH
Confidence 7521 1122333333333333 3334444 45544433222332 2356666666666668999888
Q ss_pred CCCCC-CCcchHHHHHH--------HHHHhcCC
Q 036086 276 LPPSS-QEAHRVEDLET--------GSAMDEEG 299 (355)
Q Consensus 276 af~~~-~~~~~~~~~~~--------~i~~~c~G 299 (355)
+-... .+..+++.++. +|...|.+
T Consensus 615 ~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 615 AKKMPFSEDVDLEELAQATEGYSGAEIVAVCQE 647 (693)
T ss_pred HhcCCCCccccHHHHHHHhccCChHHHHHHHHH
Confidence 63322 23346666664 45555544
No 347
>PRK05439 pantothenate kinase; Provisional
Probab=95.36 E-value=0.027 Score=52.84 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=23.1
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+-+|+|.|..|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999998876
No 348
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.35 E-value=0.015 Score=52.54 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=16.6
Q ss_pred EEcCCCccHHHHHHHHhcC
Q 036086 146 IVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 146 IvG~gGiGKTtLa~~v~~~ 164 (355)
|+|++|+||||+++.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 6899999999999998874
No 349
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.019 Score=49.26 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.++.|.|++|+||+||++.++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578899999999999999999853
No 350
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.34 E-value=0.011 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
++.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4678999999999999998874
No 351
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.34 E-value=0.055 Score=53.16 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-..++|+|..|+|||||.+.+...
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~ 186 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARG 186 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
No 352
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.31 E-value=0.014 Score=50.52 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999999763
No 353
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.30 E-value=0.022 Score=50.90 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|+|||||++.+..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 4799999999999999999854
No 354
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.28 E-value=0.12 Score=48.30 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|.|||||.+.+..
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLG 52 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999976
No 355
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.28 E-value=0.052 Score=53.05 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..++|+|..|+|||||.+.+...
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 46899999999999999988863
No 356
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.27 E-value=0.078 Score=46.97 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.|.|+|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998875
No 357
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.25 E-value=0.12 Score=49.20 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++++|+.|.|||||.+.+..
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~G 89 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILG 89 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999976
No 358
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.25 E-value=0.081 Score=50.40 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=37.3
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHH
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDDVKS----RLPFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~ 190 (355)
..-.++-|+|.+|+|||+|+..++-...... .-...+|++...+|+...+.+
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~q 176 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ 176 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHH
Confidence 3456888999999999999988764222211 112578999999888877654
No 359
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.24 E-value=0.16 Score=47.47 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.++++.|+.|.|||||.+.+..
T Consensus 32 ei~gllG~NGAGKTTllk~l~g 53 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAG 53 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999976
No 360
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.23 E-value=0.082 Score=50.19 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=29.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL 183 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 183 (355)
..++|.|..|+|||+|++++.+.. +-+..+++.+.+..
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg 195 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERG 195 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCCh
Confidence 368999999999999999998843 23466777776643
No 361
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.2 Score=53.11 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHhcC----CC--CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-------
Q 036086 124 ESSVDSVKNALLRD----GN--TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~----~~--~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~------- 190 (355)
++....|.+.+... .. .....-+.|+.|+|||-||+.+.. .+-+-.+.-+=+..|.--.+.++..
T Consensus 568 ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~evskligsp~gyvG 645 (898)
T KOG1051|consen 568 DEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQEVSKLIGSPPGYVG 645 (898)
T ss_pred HHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhhhhhhhccCCCccccc
Confidence 45555555555543 12 466888999999999999998766 3323333334444443111111111
Q ss_pred -HHHHHHhhcCCCCcE-EEEEeCCCCCChhhHHHHHHhhccC
Q 036086 191 -EIRNRRNEIPSSKRL-LFALDDVSHLNDDNLANLRLLVSDM 230 (355)
Q Consensus 191 -~l~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~ 230 (355)
.-...|.+.++.++| .|.||||...+......+...+..+
T Consensus 646 ~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 646 KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 445567777788876 5566999877787887777776653
No 362
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.22 E-value=0.15 Score=44.68 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHh
Q 036086 141 VRFIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~ 162 (355)
-+++.|.|+.|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3689999999999999999977
No 363
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.18 Score=52.78 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++.++|+.|+||||.+.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 46999999999999999888876
No 364
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.19 E-value=0.015 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998763
No 365
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.19 E-value=0.12 Score=44.60 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=54.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccc-------------cCCCCceEEEEeCCCCCHH----HHHH---HHHHHHhhcCCC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDV-------------KSRLPFKVWYSVGKNLDFS----TAVQ---EIRNRRNEIPSS 202 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~vs~~~~~~----~i~~---~l~~~l~~~l~~ 202 (355)
++.|.|+.|.||||+.+.+.-.... -..|+. +...+...-+.. .+.. ++...+.. ..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~-il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~--~~ 77 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDR-IFTRIGASDSLAQGLSTFMVEMKETANILKN--AT 77 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccce-EEEEeCCCCchhccccHHHHHHHHHHHHHHh--CC
Confidence 4679999999999999988721110 011111 111222111111 1111 22222222 24
Q ss_pred CcEEEEEeCCCCC-ChhhH----HHHHHhhccCCCCCcEEEEecCChhHhhhccc
Q 036086 203 KRLLFALDDVSHL-NDDNL----ANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQ 252 (355)
Q Consensus 203 kr~LlVlDdvw~~-~~~~~----~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~ 252 (355)
++-|+++|..-.. +...- ..+...+.. . .|+.+|++|+..++... +.
T Consensus 78 ~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~-~~~~iii~TH~~~l~~~-~~ 129 (185)
T smart00534 78 ENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-K-IGALTLFATHYHELTKL-AD 129 (185)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-c-CCCeEEEEecHHHHHHH-hh
Confidence 7899999998632 22211 122233322 1 26779999999888776 43
No 366
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.38 Score=45.55 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=80.5
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH---HHHHHHhhcCC-CCcEEEEEeCCCC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ---EIRNRRNEIPS-SKRLLFALDDVSH 214 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~---~l~~~l~~~l~-~kr~LlVlDdvw~ 214 (355)
+.++=|-++|++|.|||-||+.|.| +....| +.|..+-=+.+.+- .+...+.+.-+ ...+.|.+|.+..
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDA 255 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDA 255 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhh
Confidence 4456678999999999999999999 444333 44433211111111 34444444433 4579999999852
Q ss_pred C-----------ChhhHHHHHHhhc---c--CCCCCcEEEEecCChhHhhhc-c--cCCcccccCCCCChhhHHHHhhhh
Q 036086 215 L-----------NDDNLANLRLLVS---D--MRLVGFYVLVTTHSTSVATMM-M--QTVPEAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 215 ~-----------~~~~~~~l~~~l~---~--~~~~gs~IlvTTR~~~va~~~-~--~~~~~~~~l~~L~~~~s~~Lf~~~ 275 (355)
- +.+.-..+...|. . .. ..-|||..|-..++.... + |.-+..+++..-+.+.=.++|+-+
T Consensus 256 Ig~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~-~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IH 334 (406)
T COG1222 256 IGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR-GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIH 334 (406)
T ss_pred hhcccccCCCCchHHHHHHHHHHHHhccCCCCC-CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHH
Confidence 0 1111112222221 1 11 245888877655543220 2 222456777644444446777766
Q ss_pred CCCCC-CCcchHHHHHHHHHHhcCCCc
Q 036086 276 LPPSS-QEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 276 af~~~-~~~~~~~~~~~~i~~~c~GlP 301 (355)
+-.-. .+..+++.++ +.|.|+-
T Consensus 335 trkM~l~~dvd~e~la----~~~~g~s 357 (406)
T COG1222 335 TRKMNLADDVDLELLA----RLTEGFS 357 (406)
T ss_pred hhhccCccCcCHHHHH----HhcCCCc
Confidence 53322 2445666665 6666665
No 367
>PRK05922 type III secretion system ATPase; Validated
Probab=95.15 E-value=0.082 Score=51.80 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..++|+|..|+|||||.+.+.+.
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~ 180 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKG 180 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhcc
Confidence 35899999999999999998753
No 368
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.14 E-value=0.13 Score=54.40 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=61.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcC----------c----cccCCCCceEEEEeCCCCCHHHHHH-------HHHHHHh
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTD----------D----DVKSRLPFKVWYSVGKNLDFSTAVQ-------EIRNRRN 197 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~----------~----~~~~~F~~~~wv~vs~~~~~~~i~~-------~l~~~l~ 197 (355)
.+.+++.|.|+.+.||||+.+.+.-- | ..-..|+ .++..++...++..-+. .+...+.
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~~m~~~~~Il~ 403 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSGHMTNIVRILE 403 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHHHHHHHHHHHH
Confidence 44578899999999999999887421 0 0112233 34455554433332211 3333333
Q ss_pred hcCCCCcEEEEEeCCCCC-ChhhHHHH----HHhhccCCCCCcEEEEecCChhHhhh
Q 036086 198 EIPSSKRLLFALDDVSHL-NDDNLANL----RLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 198 ~~l~~kr~LlVlDdvw~~-~~~~~~~l----~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
.. +.+-|+++|..-.. ++..-..+ ...+. . .|+.+|+||+..+++..
T Consensus 404 ~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~-~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 404 KA--DKNSLVLFDELGAGTDPDEGAALAISILEYLR--K-RGAKIIATTHYKELKAL 455 (782)
T ss_pred hC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--H-CCCEEEEECChHHHHHH
Confidence 33 57789999998742 33322333 22232 2 47889999999888766
No 369
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.12 E-value=0.087 Score=49.52 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=55.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc----c---ccC----CCCceEEEEe--CCCCCHHHHHHHHHHHHhhcCCCCcEEE
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD----D---VKS----RLPFKVWYSV--GKNLDFSTAVQEIRNRRNEIPSSKRLLF 207 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~----~---~~~----~F~~~~wv~v--s~~~~~~~i~~~l~~~l~~~l~~kr~Ll 207 (355)
-..+.|+|..|+|||||++.+.... + +.+ .+...-|+.+ ....+. ...-...+.+...+....=.+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQG-LAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCC-cCccCHHHHHHHHhcCCCCeE
Confidence 3578999999999999999876521 1 011 1111123222 111000 000023444555667778889
Q ss_pred EEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhh
Q 036086 208 ALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 208 VlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~ 248 (355)
++|.+. +.+.|+.+ .....+. .| ++.|++..+++.
T Consensus 223 i~gE~r--~~e~~~~l-~a~~~g~-~~--~i~T~Ha~~~~~ 257 (308)
T TIGR02788 223 ILGELR--GDEAFDFI-RAVNTGH-PG--SITTLHAGSPEE 257 (308)
T ss_pred EEeccC--CHHHHHHH-HHHhcCC-Ce--EEEEEeCCCHHH
Confidence 999998 66666543 3333333 22 577777666444
No 370
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.11 E-value=0.02 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|-|.|.+|+||||||+.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~ 24 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER 24 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35888999999999999999887
No 371
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.11 E-value=0.062 Score=50.73 Aligned_cols=83 Identities=11% Similarity=0.146 Sum_probs=48.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc-------cc---cCC----CCceEEEEe--CCCCCHHHHHHHHHHHHhhcCCCCcE
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD-------DV---KSR----LPFKVWYSV--GKNLDFSTAVQEIRNRRNEIPSSKRL 205 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~-------~~---~~~----F~~~~wv~v--s~~~~~~~i~~~l~~~l~~~l~~kr~ 205 (355)
.-+.|+|..|+||||+++.+.... ++ .+. +...-|+.. +...+ ..+.++..|+...=
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~-------~~~ll~~aLR~~PD 221 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVN-------MTALLKTTLRMRPD 221 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCC-------HHHHHHHHhcCCCC
Confidence 567889999999999999887521 10 111 111123332 22223 34445666667777
Q ss_pred EEEEeCCCCCChhhHHHHHHhhccCCCCCc
Q 036086 206 LFALDDVSHLNDDNLANLRLLVSDMRLVGF 235 (355)
Q Consensus 206 LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs 235 (355)
.||+..+. +.+.|+. ..+...+. .|+
T Consensus 222 ~IivGEiR--~~Ea~~~-l~A~~tGh-~G~ 247 (319)
T PRK13894 222 RILVGEVR--GPEALDL-LMAWNTGH-EGG 247 (319)
T ss_pred EEEEeccC--CHHHHHH-HHHHHcCC-Cce
Confidence 88899998 6666664 34444444 443
No 372
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.10 E-value=0.11 Score=44.86 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 126 SVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 126 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+..+++..... .-..+.|+|..|+|||||++.+..
T Consensus 13 ~~~~~l~~~v~---~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 13 LQAAYLWLAVE---ARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCCCHHHHHHHHHh
Confidence 34444444443 235789999999999999998875
No 373
>PRK14974 cell division protein FtsY; Provisional
Probab=95.10 E-value=0.19 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+.+|.++|+.|+||||++..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999997777765
No 374
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.10 E-value=0.02 Score=57.62 Aligned_cols=40 Identities=13% Similarity=0.341 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHhcC----CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 124 ESSVDSVKNALLRD----GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 124 ~~~~~~l~~~L~~~----~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
++.+++|++.|... +..-+++.++|+.|+||||||+.+.+
T Consensus 82 ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 82 EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 88999999988433 45567999999999999999999876
No 375
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.10 E-value=0.086 Score=52.20 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=43.9
Q ss_pred EEEEEEcCCCccHHHHH-HHHhcCccccCCCCce-EEEEeCCCC-CHHHHHH----------------------------
Q 036086 142 RFIHIVGVSGTDETAIA-HRVFTDDDVKSRLPFK-VWYSVGKNL-DFSTAVQ---------------------------- 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~i~~---------------------------- 190 (355)
.-++|+|..|+|||||| ..+.+.. .-+.. +++.+++.. .+.++..
T Consensus 142 QR~~I~g~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~a 217 (485)
T CHL00059 142 QRELIIGDRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLA 217 (485)
T ss_pred CEEEeecCCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHH
Confidence 35899999999999995 4565532 22444 677776544 3334433
Q ss_pred -----HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 -----EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 -----~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +|+..|+|+||+-
T Consensus 218 p~~a~aiAEyfr~--~G~~VLlv~DdlT 243 (485)
T CHL00059 218 PYTGAALAEYFMY--RGRHTLIIYDDLS 243 (485)
T ss_pred HHHHhhHHHHHHH--cCCCEEEEEcChh
Confidence 34455554 5899999999984
No 376
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.056 Score=50.34 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=44.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCcccc--CCCCceEEEEeCCC------CCHH-HHHHHHHHHHhhcCCCCc--EEEEE
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVK--SRLPFKVWYSVGKN------LDFS-TAVQEIRNRRNEIPSSKR--LLFAL 209 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~------~~~~-~i~~~l~~~l~~~l~~kr--~LlVl 209 (355)
-++|-+.|++|.|||+|.+.+++.-.++ +.+....-+-++.. |... ++...+-+.+.+.+.++. .++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3688999999999999999999866443 34443334433321 1111 122245556666666554 45667
Q ss_pred eCCC
Q 036086 210 DDVS 213 (355)
Q Consensus 210 Ddvw 213 (355)
|.|.
T Consensus 257 DEVE 260 (423)
T KOG0744|consen 257 DEVE 260 (423)
T ss_pred HHHH
Confidence 8875
No 377
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.09 E-value=0.13 Score=49.02 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999875
No 378
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.09 E-value=0.19 Score=50.94 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-..++|+|..|+|||||++.+..
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999864
No 379
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.08 E-value=0.23 Score=50.14 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=38.4
Q ss_pred HHhhcCCCCcEEEEEeCCCCC-ChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhcccCCcccccCC
Q 036086 195 RRNEIPSSKRLLFALDDVSHL-NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQTVPEAEHLI 261 (355)
Q Consensus 195 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~l~ 261 (355)
.+...+-.+.=++|||.=-+. +.+..+.+..++..- +|+ ||+.|+++..... +.+ +++.+.
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gt-vl~VSHDr~Fl~~-va~--~i~~~~ 510 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGT-VLLVSHDRYFLDR-VAT--RIWLVE 510 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCe-EEEEeCCHHHHHh-hcc--eEEEEc
Confidence 344455567889999985532 344555555555543 365 8889999987776 543 345444
No 380
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.07 E-value=0.014 Score=49.24 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 036086 144 IHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~ 164 (355)
|.|+|+.|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998763
No 381
>PTZ00035 Rad51 protein; Provisional
Probab=95.07 E-value=0.15 Score=48.59 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=35.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCcccc---C-CCCceEEEEeCCCCCHHHHHH
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDDVK---S-RLPFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~i~~ 190 (355)
..-.++.|+|..|+|||||+..+.-..... . .=...+|++-...|+...+.+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ 171 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQ 171 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHH
Confidence 345789999999999999999886432221 1 112445888777777665543
No 382
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.05 E-value=0.14 Score=53.73 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++|+|..|+|||||++.+..
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999864
No 383
>PRK14530 adenylate kinase; Provisional
Probab=95.04 E-value=0.016 Score=51.39 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 384
>PRK13975 thymidylate kinase; Provisional
Probab=95.04 E-value=0.018 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 385
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.04 E-value=0.15 Score=51.20 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-.+|+|+|.+|+||||++..+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999988765
No 386
>PRK13947 shikimate kinase; Provisional
Probab=95.03 E-value=0.016 Score=49.22 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999877
No 387
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.03 E-value=0.022 Score=44.67 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=19.2
Q ss_pred EEEEEEcCCCccHHHHHHHHh
Q 036086 142 RFIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~ 162 (355)
..++|+|+.|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 578999999999999999865
No 388
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.02 E-value=0.017 Score=47.99 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 036086 144 IHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~ 163 (355)
|.++|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999876
No 389
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.02 E-value=0.16 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++|+|..|+|||||++.+..
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999865
No 390
>PRK13949 shikimate kinase; Provisional
Probab=95.01 E-value=0.017 Score=49.35 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-|.|+|+.|+||||+++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998873
No 391
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.017 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.|.|+|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3779999999999999999884
No 392
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.00 E-value=0.24 Score=46.52 Aligned_cols=147 Identities=15% Similarity=0.093 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHhcCc-cccCCCCceEEEEeCCCCCHHH-----HHH-----
Q 036086 124 ESSVDSVKNALLRD--GNTVRFIHIVGVSGTDETAIAHRVFTDD-DVKSRLPFKVWYSVGKNLDFST-----AVQ----- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~-----i~~----- 190 (355)
.++..++-.|+... .++..-+.|+|+.|.|||+|.-.+..|. ++.++ ..-|...+.....+ |.+
T Consensus 30 ~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I~rql~~e 106 (408)
T KOG2228|consen 30 QDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGITRQLALE 106 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHHHHHHHHH
Confidence 56666666666544 3445567899999999999998887751 23333 34455555544422 222
Q ss_pred ------------HHHHHHhhcC------CCCcEEEEEeCCCCCChh----hHHHHHHhhc-cCCCCCcEEEEecCChh--
Q 036086 191 ------------EIRNRRNEIP------SSKRLLFALDDVSHLNDD----NLANLRLLVS-DMRLVGFYVLVTTHSTS-- 245 (355)
Q Consensus 191 ------------~l~~~l~~~l------~~kr~LlVlDdvw~~~~~----~~~~l~~~l~-~~~~~gs~IlvTTR~~~-- 245 (355)
+-...+-..| .+-++..|+|...-.-.. .+-.+...-. ... +-+-|-+|||-..
T Consensus 107 ~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~-Piciig~Ttrld~lE 185 (408)
T KOG2228|consen 107 LNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARA-PICIIGVTTRLDILE 185 (408)
T ss_pred HhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCC-CeEEEEeeccccHHH
Confidence 1111222222 223577888776421111 1111111112 223 5666788998643
Q ss_pred -----HhhhcccCCcccccCCCCChhhHHHHhhhhC
Q 036086 246 -----VATMMMQTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 246 -----va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
|-.. +... .++-+++++-++...++++..
T Consensus 186 ~LEKRVKSR-Fshr-~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 186 LLEKRVKSR-FSHR-VIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHhh-cccc-eeeccCCCChHHHHHHHHHHh
Confidence 2222 3333 466678888899999988765
No 393
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.98 E-value=0.021 Score=50.36 Aligned_cols=26 Identities=8% Similarity=0.331 Sum_probs=23.8
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++++|+++|..|+|||||...+..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999999876
No 394
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.97 E-value=0.23 Score=42.16 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999988765
No 395
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.95 E-value=0.2 Score=42.78 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=31.7
Q ss_pred HHHHHHhhcCCCC-cEEEEEeCCCC---CChhhHHHHHHhhccCCCCCcEEEEecCCh
Q 036086 191 EIRNRRNEIPSSK-RLLFALDDVSH---LNDDNLANLRLLVSDMRLVGFYVLVTTHST 244 (355)
Q Consensus 191 ~l~~~l~~~l~~k-r~LlVlDdvw~---~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~ 244 (355)
...+..++.+... --|||||.+-. ...-..+.+...+.... .+.-||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp-~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERP-GHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC-CCCEEEEECCCC
Confidence 4444555555444 45999999841 11222344555555444 566899999986
No 396
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.95 E-value=0.024 Score=49.24 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999873
No 397
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.93 E-value=0.022 Score=46.28 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+++|+|..|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 47899999999999999998873
No 398
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.93 E-value=0.16 Score=53.13 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..|+|+|..|+|||||++.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999854
No 399
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.89 E-value=0.017 Score=48.55 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
|++|+|+.|+|||||+..+..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 400
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.89 E-value=0.33 Score=47.85 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+.+|.++|..|+||||++..+..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999999988865
No 401
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.88 E-value=0.019 Score=47.96 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|.|+|.+|+||||||+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 402
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.85 E-value=0.021 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.-|.|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 468899999999999999988764
No 403
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.84 E-value=0.027 Score=51.52 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=35.0
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL 183 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 183 (355)
+.-+++.|.|.+|+|||+++.+... ....+....+||+....+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH
Confidence 3457899999999999999998876 455558888999988654
No 404
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=94.83 E-value=0.093 Score=51.57 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-..++|+|..|+|||||.+.+.+.
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhCC
Confidence 356899999999999999988763
No 405
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.83 E-value=0.02 Score=50.18 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-.+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999998883
No 406
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=94.83 E-value=0.11 Score=51.73 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=45.2
Q ss_pred EEEEEEcCCCccHHHHH-HHHhcCccccCCCCc-eEEEEeCCCCC-HHHHHH----------------------------
Q 036086 142 RFIHIVGVSGTDETAIA-HRVFTDDDVKSRLPF-KVWYSVGKNLD-FSTAVQ---------------------------- 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~i~~---------------------------- 190 (355)
.-++|.|..|+|||||| ..+.+.. .-+. .+++.+++... +.++..
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~a 238 (497)
T TIGR03324 163 QRELILGDRQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIA 238 (497)
T ss_pred CEEEeecCCCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHH
Confidence 35899999999999996 5777732 2344 56777776543 334433
Q ss_pred -----HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 -----EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 -----~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +++..|+|+||+-
T Consensus 239 p~~a~aiAEyfrd--~G~~VLlv~DdlT 264 (497)
T TIGR03324 239 PYAATSIGEHFME--QGRDVLIVYDDLT 264 (497)
T ss_pred HHHHHHHHHHHHh--CCCCEEEEEcChh
Confidence 34444443 5899999999984
No 407
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.82 E-value=0.15 Score=48.36 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=52.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCC-CCHHHHHHHHHH------------HHhhcCCCCcEEEEE
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKN-LDFSTAVQEIRN------------RRNEIPSSKRLLFAL 209 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~l~~------------~l~~~l~~kr~LlVl 209 (355)
-|-|+|..|+||+++|+.++.... ....-||.+.-. .+...+...+.. ..........=.|+|
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~s~----r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l 106 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYLSS----RWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFL 106 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHhCC----ccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEe
Confidence 467899999999999999986321 112234433321 121111111100 000011112235789
Q ss_pred eCCCCCChhhHHHHHHhhccCCC----------CCcEEEEecCCh
Q 036086 210 DDVSHLNDDNLANLRLLVSDMRL----------VGFYVLVTTHST 244 (355)
Q Consensus 210 Ddvw~~~~~~~~~l~~~l~~~~~----------~gs~IlvTTR~~ 244 (355)
|+|..-.......|...+..+.. ...|||.||...
T Consensus 107 ~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 107 DELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred CChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 99987677777777766643210 125788877543
No 408
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.82 E-value=0.068 Score=52.61 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=44.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHH-----------------------------H
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-DFSTAVQ-----------------------------E 191 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~-----------------------------~ 191 (355)
.-++|+|..|+|||||+.++..... +++=...+++-+.+.. .+.+++. .
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4589999999999999998765321 1122355666665543 2233333 2
Q ss_pred HHHHHhhcC---CCCcEEEEEeCCC
Q 036086 192 IRNRRNEIP---SSKRLLFALDDVS 213 (355)
Q Consensus 192 l~~~l~~~l---~~kr~LlVlDdvw 213 (355)
..-.+.+++ +++.+|+++||+-
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecchh
Confidence 233344444 5789999999984
No 409
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.81 E-value=0.48 Score=48.13 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhh-----
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNE----- 198 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~----- 198 (355)
.....++.+.+..-...-.-|-|+|..|+|||++|+.|++...- ...-||.+.-..-....+. ..+..
T Consensus 202 s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r----~~~pfv~i~c~~~~~~~~~---~~lfg~~~~~ 274 (534)
T TIGR01817 202 SPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR----AKRPFVKVNCAALSETLLE---SELFGHEKGA 274 (534)
T ss_pred CHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC----CCCCeEEeecCCCCHHHHH---HHHcCCCCCc
Confidence 44455555554432122234669999999999999999874321 1122333332111112111 11100
Q ss_pred -----------cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCC--C--------CcEEEEecCC
Q 036086 199 -----------IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRL--V--------GFYVLVTTHS 243 (355)
Q Consensus 199 -----------~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~--~--------gs~IlvTTR~ 243 (355)
.-....=.|+||+|..-.......|...+..+.. . ..|||.||..
T Consensus 275 ~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 275 FTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred cCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 0112234688999987777777788777654210 1 2478887754
No 410
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.80 E-value=0.079 Score=52.35 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=45.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCC--ceEEEEeCCCCC-HHHHHH----------------------------
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLP--FKVWYSVGKNLD-FSTAVQ---------------------------- 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~-~~~i~~---------------------------- 190 (355)
.-++|.|-.|+|||||+.++.+.....+.+. ..+++.+++.-. +.+++.
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 3589999999999999999888543321111 445666665443 333333
Q ss_pred -HHHHHHhhcC---CCCcEEEEEeCCC
Q 036086 191 -EIRNRRNEIP---SSKRLLFALDDVS 213 (355)
Q Consensus 191 -~l~~~l~~~l---~~kr~LlVlDdvw 213 (355)
...-.+.+++ ++++.|+++||+-
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 2222344444 4789999999984
No 411
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.80 E-value=0.058 Score=53.01 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=46.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccC--CCC---------ceEEEEeCCCCCHHHHHH--------------------
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKS--RLP---------FKVWYSVGKNLDFSTAVQ-------------------- 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~i~~-------------------- 190 (355)
.-++|+|-+|+|||||+.++.+..+..+ ..| ..+++.+.+.....+.+.
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 4589999999999999999887543100 011 445666666655444333
Q ss_pred ----------HHHHHHhhcC---CCCcEEEEEeCCC
Q 036086 191 ----------EIRNRRNEIP---SSKRLLFALDDVS 213 (355)
Q Consensus 191 ----------~l~~~l~~~l---~~kr~LlVlDdvw 213 (355)
...-.+.+++ +++..|+++||+-
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 2222344444 3689999999983
No 412
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.3 Score=42.17 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+-|.|+.|+|||||.+.+..
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 3678999999999999999864
No 413
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.79 E-value=0.027 Score=46.80 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCc
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
-|.++|.+|+|||||+..+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999987654
No 414
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.77 E-value=0.13 Score=54.29 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=58.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCc---ccc-----------CCCCceEEEEeCCCCCHHHHHH-------HHHHHHh
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDD---DVK-----------SRLPFKVWYSVGKNLDFSTAVQ-------EIRNRRN 197 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~---~~~-----------~~F~~~~wv~vs~~~~~~~i~~-------~l~~~l~ 197 (355)
.+..++.|+|+.|.|||||.+.+.... ... ..|+. ++..+...-++..-+. .+...+.
T Consensus 320 ~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~-i~~~i~~~~si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 320 FEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEE-IFADIGDEQSIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred CCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhh-eeeecChHhHHhhhhhHHHHHHHHHHHHHH
Confidence 344789999999999999999875421 000 01111 1222222211111111 2222222
Q ss_pred hcCCCCcEEEEEeCCCCC-ChhhHHHH----HHhhccCCCCCcEEEEecCChhHhhh
Q 036086 198 EIPSSKRLLFALDDVSHL-NDDNLANL----RLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 198 ~~l~~kr~LlVlDdvw~~-~~~~~~~l----~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
. + +.+-|+++|..-.. ++..-..+ ...+. . .|+.+|+||+...+...
T Consensus 399 ~-~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~-~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 399 K-T-TENSLVLFDELGAGTDPDEGSALAISILEYLL--K-QNAQVLITTHYKELKAL 450 (771)
T ss_pred h-c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--h-cCCEEEEECChHHHHHH
Confidence 2 2 57899999998742 33333333 22332 2 57889999999887654
No 415
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.77 E-value=0.056 Score=52.12 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=27.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK 181 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 181 (355)
-.++.|.|.+|+|||||+.++... ....-...+|++...
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE 120 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE 120 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc
Confidence 458899999999999999988763 222223556776544
No 416
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.75 E-value=0.19 Score=51.59 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++|+|..|+|||||++.+..
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999864
No 417
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.74 E-value=1.2 Score=41.50 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcc------------ccCCCCceEEEE-eCC--CCCHHHHHHHH
Q 036086 128 DSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDD------------VKSRLPFKVWYS-VGK--NLDFSTAVQEI 192 (355)
Q Consensus 128 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~------------~~~~F~~~~wv~-vs~--~~~~~~i~~~l 192 (355)
+++.+.+.. +.-....-++|+.|+||+++|..+...-- -..|=|. .|+. ... ...+..+ +++
T Consensus 7 ~~L~~~i~~-~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~-~~i~p~~~~~~I~idqi-R~l 83 (290)
T PRK05917 7 EALIQRVRD-QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDI-HEFSPQGKGRLHSIETP-RAI 83 (290)
T ss_pred HHHHHHHHc-CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCE-EEEecCCCCCcCcHHHH-HHH
Confidence 445555543 23355778999999999999976543111 0113332 2332 221 1333333 345
Q ss_pred HHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCcccccCCCC
Q 036086 193 RNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAEHLIYF 263 (355)
Q Consensus 193 ~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~l~~L 263 (355)
.+.+... ..+++=++|+|++..-+...++.+...+..-. .++.+|++|.+ ..+... +-+....+++.++
T Consensus 84 ~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp-~~~~fiL~~~~~~~ll~T-I~SRcq~~~~~~~ 154 (290)
T PRK05917 84 KKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPP-QHGVIILTSAKPQRLPPT-IRSRSLSIHIPME 154 (290)
T ss_pred HHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCC-CCeEEEEEeCChhhCcHH-HHhcceEEEccch
Confidence 4444332 34666678899998777888999988886654 55665555544 444433 3322255666654
No 418
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=94.74 E-value=0.13 Score=50.66 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..++|+|..|+|||||.+.+.+.
T Consensus 164 q~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 164 QRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988763
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.74 E-value=0.12 Score=45.86 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=19.4
Q ss_pred EEEEEEcCCCccHHHHHHHHh
Q 036086 142 RFIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~ 162 (355)
.++.|.|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999974
No 420
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=94.73 E-value=0.09 Score=52.55 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=45.2
Q ss_pred EEEEEEcCCCccHHHHH-HHHhcCccccCCCCce-EEEEeCCCCC-HHHHHH----------------------------
Q 036086 142 RFIHIVGVSGTDETAIA-HRVFTDDDVKSRLPFK-VWYSVGKNLD-FSTAVQ---------------------------- 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~~-~~~i~~---------------------------- 190 (355)
.-++|.|..|+|||||| ..+.+.. .-+.. +++.+++... +.++..
T Consensus 162 Qr~~I~g~~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a 237 (501)
T TIGR00962 162 QRELIIGDRQTGKTAVAIDTIINQK----DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLA 237 (501)
T ss_pred CEEEeecCCCCCccHHHHHHHHhhc----CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHH
Confidence 35899999999999996 5666632 33554 6777776543 334433
Q ss_pred -----HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 -----EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 -----~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +|+..|+|+||+-
T Consensus 238 ~~~a~aiAEyfrd--~G~~VLlv~Ddlt 263 (501)
T TIGR00962 238 PYTGCTMAEYFRD--NGKHALIIYDDLS 263 (501)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEecchH
Confidence 44455554 4899999999984
No 421
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.73 E-value=0.015 Score=53.68 Aligned_cols=84 Identities=18% Similarity=0.297 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhh-------c
Q 036086 127 VDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNE-------I 199 (355)
Q Consensus 127 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~-------~ 199 (355)
...+++.++.. +.+ +-++|+.|+|||++++....... ...| ...-++.|..-....+.+.+...+.+ -
T Consensus 22 ~~~ll~~l~~~--~~p-vLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP 96 (272)
T PF12775_consen 22 YSYLLDLLLSN--GRP-VLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP 96 (272)
T ss_dssp HHHHHHHHHHC--TEE-EEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE
T ss_pred HHHHHHHHHHc--CCc-EEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC
Confidence 34566666642 334 47999999999999998775311 1111 12234444443333333211111111 0
Q ss_pred CCCCcEEEEEeCCCCC
Q 036086 200 PSSKRLLFALDDVSHL 215 (355)
Q Consensus 200 l~~kr~LlVlDdvw~~ 215 (355)
-.+|+.++.+||+--.
T Consensus 97 ~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 97 PGGKKLVLFIDDLNMP 112 (272)
T ss_dssp ESSSEEEEEEETTT-S
T ss_pred CCCcEEEEEecccCCC
Confidence 1357899999999543
No 422
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.73 E-value=0.027 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999987665
No 423
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.72 E-value=0.024 Score=48.50 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..|.|+|+.|+|||||++.+.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999999863
No 424
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.69 E-value=0.13 Score=50.48 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-..++|+|..|+|||||++.+...
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~ 180 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKG 180 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 347899999999999999998853
No 425
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.65 E-value=0.021 Score=47.93 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCc
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
+|.|-|++|+||||+|+.+.++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 68899999999999999998743
No 426
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.64 E-value=0.14 Score=49.18 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~llG~sGsGKSTLLr~iaG 52 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAG 52 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHC
Confidence 4799999999999999999975
No 427
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.63 E-value=0.027 Score=50.57 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|++|+|||||.+.|..
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999864
No 428
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.62 E-value=0.038 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=19.7
Q ss_pred CeEEEEEEcCCCccHH-HHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDET-AIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKT-tLa~~v~~ 163 (355)
+-++|.+||+.|+||| |||+....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999998 67776544
No 429
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=94.61 E-value=0.07 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=19.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
--|.++|.+|+|||||...+.++
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~ 29 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDG 29 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35779999999999999998764
No 430
>PLN02348 phosphoribulokinase
Probab=94.60 E-value=0.035 Score=53.44 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=23.5
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+...+|+|.|.+|+||||+|+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999886
No 431
>PRK14527 adenylate kinase; Provisional
Probab=94.60 E-value=0.026 Score=49.01 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|.|+|++|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999875
No 432
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.60 E-value=0.12 Score=49.53 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHC
Confidence 4799999999999999999975
No 433
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.59 E-value=0.03 Score=49.04 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..+|.|.|.+|+||||+|+.+.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998874
No 434
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.58 E-value=0.18 Score=50.74 Aligned_cols=64 Identities=13% Similarity=0.215 Sum_probs=41.0
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.....+|.++|.+|+||||+|+.+.... -|+.++.. ...-.........+.|...+- +|+|+..
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~---------g~~~vn~D--~lg~~~~~~~~a~~~L~~G~s-VVIDaTn 429 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPA---------GYKHVNAD--TLGSTQNCLTACERALDQGKR-CAIDNTN 429 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHc---------CCeEECcH--HHHHHHHHHHHHHHHHhCCCc-EEEECCC
Confidence 3567899999999999999999877621 24444432 112122334445556655443 6789986
No 435
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.57 E-value=0.17 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++|+|..|+|||||++.+..
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999864
No 436
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.56 E-value=0.059 Score=51.10 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 128 DSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 128 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..|.+.+....+...+|+|.|.+|+|||||+..+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 455555554355678999999999999999998765
No 437
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=94.55 E-value=0.1 Score=52.20 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=42.8
Q ss_pred EEEEEEcCCCccHHHHH-HHHhcCccccCCCCce-EEEEeCCCCCH-HHHHH----------------------------
Q 036086 142 RFIHIVGVSGTDETAIA-HRVFTDDDVKSRLPFK-VWYSVGKNLDF-STAVQ---------------------------- 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~~~-~~i~~---------------------------- 190 (355)
.-++|.|..|+|||||| ..+.+.. .-+.. +++.+++.... .++..
T Consensus 163 Qr~~Ifg~~g~GKt~lal~~i~~~~----~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a 238 (502)
T PRK09281 163 QRELIIGDRQTGKTAIAIDTIINQK----GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLA 238 (502)
T ss_pred cEEEeecCCCCCchHHHHHHHHHhc----CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHH
Confidence 45899999999999995 4555421 22443 66766665432 23322
Q ss_pred -----HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 -----EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 -----~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +++..|+|+||+-
T Consensus 239 ~~~a~tiAEyfrd--~G~~VLli~DdlT 264 (502)
T PRK09281 239 PYAGCAMGEYFMD--NGKDALIVYDDLS 264 (502)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEecCch
Confidence 34455554 3899999999984
No 438
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.55 E-value=0.055 Score=49.70 Aligned_cols=104 Identities=11% Similarity=0.191 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceE---------------EEEe---CCCCCHHHHH
Q 036086 128 DSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKV---------------WYSV---GKNLDFSTAV 189 (355)
Q Consensus 128 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~---------------wv~v---s~~~~~~~i~ 189 (355)
+.+.++|...-..-..|.|.|..|+||||++..+.. .+... +.++ |+.+ ....+
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~--~i~~~-~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~----- 185 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLE--EIPPE-DERIVTIEDPPELRLPGPNQIQIQTRRDEIS----- 185 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHH--HCHTT-TSEEEEEESSS-S--SCSSEEEEEEETTTBS-----
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHHHHhh--hcccc-ccceEEeccccceeecccceEEEEeecCccc-----
Confidence 445555543312346789999999999999998865 22222 1111 2211 12233
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEE-EEecCChhHhh
Q 036086 190 QEIRNRRNEIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYV-LVTTHSTSVAT 248 (355)
Q Consensus 190 ~~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~I-lvTTR~~~va~ 248 (355)
..+.+...|+...=.++++.+. +.+.+..+ .+.. .|..+ +-|.+..++..
T Consensus 186 --~~~~l~~~LR~~pD~iiigEiR--~~e~~~~~-~a~~----tGh~~~~tT~Ha~s~~~ 236 (270)
T PF00437_consen 186 --YEDLLKSALRQDPDVIIIGEIR--DPEAAEAI-QAAN----TGHLGSLTTLHANSAED 236 (270)
T ss_dssp --HHHHHHHHTTS--SEEEESCE---SCHHHHHH-HHHH----TT-EEEEEEEE-SSHHH
T ss_pred --HHHHHHHHhcCCCCcccccccC--CHhHHHHH-Hhhc----cCCceeeeeeecCCHHH
Confidence 4445666677778889999998 55666553 3332 46667 66666555443
No 439
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.55 E-value=0.033 Score=47.02 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
+...|+|+|..|+|||||.+.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3456899999999999999999874
No 440
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.54 E-value=0.028 Score=51.86 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
++|+|+|.+|+|||||+..+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD 23 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 441
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.54 E-value=0.057 Score=48.94 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 126 SVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 126 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...++++.+....++..+|+|.|++|.||+||.-.+..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence 45667777776656678999999999999999988765
No 442
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.53 E-value=0.13 Score=54.25 Aligned_cols=94 Identities=11% Similarity=0.127 Sum_probs=51.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-------HHHHHHhhcC-----CCCcEEEEE
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-------EIRNRRNEIP-----SSKRLLFAL 209 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-------~l~~~l~~~l-----~~kr~LlVl 209 (355)
++..|.|.+|.||||+++.+..- .+.. ...+..+....-....+.. .+...+...- -.+.-|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~--~~~~-g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIv 445 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREA--WEAA-GYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVI 445 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHH--HHhC-CCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEE
Confidence 47789999999999999998752 2211 2234443332222222211 1111111111 135579999
Q ss_pred eCCCCCChhhHHHHHHhhccCCCCCcEEEEec
Q 036086 210 DDVSHLNDDNLANLRLLVSDMRLVGFYVLVTT 241 (355)
Q Consensus 210 Ddvw~~~~~~~~~l~~~l~~~~~~gs~IlvTT 241 (355)
|+.-.-+...+..|..... . .|++||+.-
T Consensus 446 DEasMv~~~~~~~Ll~~~~--~-~~~kliLVG 474 (744)
T TIGR02768 446 DEAGMVGSRQMARVLKEAE--E-AGAKVVLVG 474 (744)
T ss_pred ECcccCCHHHHHHHHHHHH--h-cCCEEEEEC
Confidence 9987555555665544322 2 578877644
No 443
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.53 E-value=0.028 Score=48.62 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 444
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.51 E-value=0.17 Score=53.03 Aligned_cols=99 Identities=13% Similarity=0.182 Sum_probs=53.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-HH------------HHHHhhcCCCCcEEEE
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-EI------------RNRRNEIPSSKRLLFA 208 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-~l------------~~~l~~~l~~kr~LlV 208 (355)
.-|-|+|..|+|||++|+.+++...-.+ ..-+.+....-. ...+. .+ .......-....=.|+
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~s~r~~--~~~v~i~c~~~~--~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~ 475 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNLSGRNN--RRMVKMNCAAMP--AGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 475 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCC--CCeEEEecccCC--hhHhhhhhcCcccccccccccchhhHHHhcCCCeEE
Confidence 3577999999999999999987432111 111222222211 11111 00 0001111111234699
Q ss_pred EeCCCCCChhhHHHHHHhhccCCC----------CCcEEEEecCCh
Q 036086 209 LDDVSHLNDDNLANLRLLVSDMRL----------VGFYVLVTTHST 244 (355)
Q Consensus 209 lDdvw~~~~~~~~~l~~~l~~~~~----------~gs~IlvTTR~~ 244 (355)
||+|..-.......|...+..+.- .+.|||.||...
T Consensus 476 Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 476 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred EechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 999987777777777776643210 234888888653
No 445
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.50 E-value=0.027 Score=47.56 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|++|+|..|+|||||...+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 47999999999999999999876
No 446
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.49 E-value=0.14 Score=50.14 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-..++|+|..|+|||||++.+...
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcc
Confidence 357899999999999999988763
No 447
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.49 E-value=0.085 Score=50.65 Aligned_cols=31 Identities=13% Similarity=0.380 Sum_probs=24.0
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 130 VKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 130 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+.+.+.. .-..|.|+|+.|+||||+++.+.+
T Consensus 126 ~~~~~~~---~~glilI~GpTGSGKTTtL~aLl~ 156 (358)
T TIGR02524 126 IIDAIAP---QEGIVFITGATGSGKSTLLAAIIR 156 (358)
T ss_pred HHHHHhc---cCCEEEEECCCCCCHHHHHHHHHH
Confidence 4554442 346899999999999999998865
No 448
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.49 E-value=0.092 Score=49.16 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=41.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc-------cc---cCC----CCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD-------DV---KSR----LPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLF 207 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~-------~~---~~~----F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~Ll 207 (355)
..+.|+|..|+||||+++.+.+.- ++ .+. +...-|+.+....... ...+.++..|+...=.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~----~~~~~l~~aLR~~pD~i 208 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAI----SMTRLLKATLRLRPDRI 208 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCC----CHHHHHHHHhcCCCCEE
Confidence 346699999999999999987521 10 111 1111123221111100 33445566666667777
Q ss_pred EEeCCCCCChhhHHHH
Q 036086 208 ALDDVSHLNDDNLANL 223 (355)
Q Consensus 208 VlDdvw~~~~~~~~~l 223 (355)
|+..+. +.+.|+.+
T Consensus 209 ivGEiR--~~ea~~~l 222 (299)
T TIGR02782 209 IVGEVR--GGEALDLL 222 (299)
T ss_pred EEeccC--CHHHHHHH
Confidence 788887 55566543
No 449
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.48 E-value=0.029 Score=48.20 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.++.|+|+.|+|||||++.+..-
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873
No 450
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=94.48 E-value=0.11 Score=51.92 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=43.4
Q ss_pred EEEEEEcCCCccHHHHH-HHHhcCccccCCCCce-EEEEeCCCCC-HHHHHH----------------------------
Q 036086 142 RFIHIVGVSGTDETAIA-HRVFTDDDVKSRLPFK-VWYSVGKNLD-FSTAVQ---------------------------- 190 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~~-~~~i~~---------------------------- 190 (355)
.-++|.|..|+|||||| ..+.+.. .-+.. +++.+++... +.++..
T Consensus 163 QR~~I~g~~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~a 238 (502)
T PRK13343 163 QRELIIGDRQTGKTAIAIDAIINQK----DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLA 238 (502)
T ss_pred CEEEeeCCCCCCccHHHHHHHHhhc----CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHH
Confidence 35899999999999995 5666521 23443 6666666543 233333
Q ss_pred -----HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 -----EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 -----~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +++..|+|+||+-
T Consensus 239 p~~a~aiAEyfrd--~G~~VLlv~DdlT 264 (502)
T PRK13343 239 PFAGCAIAEYFRD--QGQDALIVYDDLS 264 (502)
T ss_pred HHHHHHHHHHHHh--CCCCEEEEecchH
Confidence 33444443 5899999999984
No 451
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.028 Score=47.66 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=18.4
Q ss_pred EEEEEcCCCccHHHHHHHHh
Q 036086 143 FIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~ 162 (355)
.|.|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999876
No 452
>PRK04182 cytidylate kinase; Provisional
Probab=94.47 E-value=0.03 Score=47.74 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 453
>PLN02200 adenylate kinase family protein
Probab=94.45 E-value=0.032 Score=50.28 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+.+|.|+|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998875
No 454
>PLN02840 tRNA dimethylallyltransferase
Probab=94.44 E-value=0.081 Score=51.57 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
....+|.|.|+.|+||||||..+...
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~ 44 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKR 44 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998763
No 455
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.43 E-value=0.036 Score=46.82 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
++++|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999887
No 456
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.42 E-value=0.047 Score=48.59 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=29.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 190 (355)
.|+|+|-||+||||+|..+.....-++.|+. .=|....++++...+-
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V-LvVDaDpd~nL~~~LG 48 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV-LVVDADPDSNLPEALG 48 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE-EEEeCCCCCChHHhcC
Confidence 6899999999999999884442111222433 2244445666665554
No 457
>PRK08356 hypothetical protein; Provisional
Probab=94.39 E-value=0.041 Score=48.03 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=19.2
Q ss_pred EEEEEEcCCCccHHHHHHHHh
Q 036086 142 RFIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~ 162 (355)
.+|.|+|+.|+||||+|+.+-
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999983
No 458
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.39 E-value=0.033 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||++.+..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhC
Confidence 4799999999999999999987
No 459
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=94.38 E-value=0.21 Score=49.04 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-..++|+|..|+|||||.+.+.+.
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~ 168 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARG 168 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCC
Confidence 356799999999999999988863
No 460
>PLN02796 D-glycerate 3-kinase
Probab=94.38 E-value=0.036 Score=52.58 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+-+|+|.|..|+|||||++.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467899999999999999999887
No 461
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.38 E-value=0.034 Score=49.00 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|.|||||++.+..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 462
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.34 E-value=0.39 Score=43.10 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=32.6
Q ss_pred HHhhcCCCCcEEEEEeCCCC----CChhhHHHHHHhhccCCCCCcEEEEecCChhHhhh
Q 036086 195 RRNEIPSSKRLLFALDDVSH----LNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 195 ~l~~~l~~kr~LlVlDdvw~----~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
.+.+.+.-.+-|+.+|.=-. -.....+.+...+.+.- |+.+++.|++-+-+..
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~l--g~T~i~VTHDl~s~~~ 211 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL--GLTVIMVTHDLDSLLT 211 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhh--CCEEEEEECChHHHHh
Confidence 34455555678999997432 13456677777676654 6667777776554443
No 463
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.33 E-value=0.036 Score=47.98 Aligned_cols=22 Identities=9% Similarity=0.353 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|+|||||.+.+..
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999987
No 464
>PRK06761 hypothetical protein; Provisional
Probab=94.32 E-value=0.066 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
++|.|.|++|+||||+++.+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999984
No 465
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.32 E-value=0.03 Score=47.24 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=16.9
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 036086 144 IHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~ 163 (355)
|+|.|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999886
No 466
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.32 E-value=0.051 Score=49.47 Aligned_cols=108 Identities=13% Similarity=0.149 Sum_probs=62.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEE------eCCCCC---HHHHHH-------------------HH
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYS------VGKNLD---FSTAVQ-------------------EI 192 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~---~~~i~~-------------------~l 192 (355)
-.++++||..|+|||||++.+.. -.+... ..++.. .+..-. +.+++. +.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~--L~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG--LEEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc--CcCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 35799999999999999999986 222222 223322 111101 111111 22
Q ss_pred H-HHHhhcCCCCcEEEEEeCCCCC-Ch---hhHHHHHHhhccCCCCCcEEEEecCChhHhhhcccCC
Q 036086 193 R-NRRNEIPSSKRLLFALDDVSHL-ND---DNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQTV 254 (355)
Q Consensus 193 ~-~~l~~~l~~kr~LlVlDdvw~~-~~---~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~~ 254 (355)
+ -.+...|.-+.-|+|.|..-+. +. .+.-.+...+... .|-..+..|.+-.|+.. ++..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~--~~lt~lFIsHDL~vv~~-isdr 179 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE--LGLTYLFISHDLSVVRY-ISDR 179 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH--hCCeEEEEEEEHHhhhh-hccc
Confidence 2 2345556678889999986421 11 1222233344433 36678999999999988 5543
No 467
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=94.31 E-value=0.3 Score=50.18 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-..++|+|..|+|||||++.+..
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHcc
Confidence 35789999999999999999854
No 468
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.31 E-value=0.055 Score=50.67 Aligned_cols=36 Identities=8% Similarity=0.205 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 128 DSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 128 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+++-+........+|+|+|.+|+|||||+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 344444433345678999999999999999998765
No 469
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.30 E-value=0.057 Score=49.80 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 036086 127 VDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 127 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 190 (355)
-.+|+..+....++..+|+|.|.+|+||+||.-.+-....-+.|=-.++=|.-|.+|+--.++-
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 3567777777677888999999999999999988766332233322233344456666555543
No 470
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.30 E-value=0.48 Score=45.68 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+++.++|+.|+||||++..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998875
No 471
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.1 Score=52.54 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=41.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH----HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ----EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~----~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.++=|-+.|++|+|||.||+.+.+...+ .| +.++.+--+..+.- .+.+.+.+.-..-.|++.+|++.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf-----~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGV--PF-----LSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCC--ce-----EeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 3455779999999999999999984332 33 33322211111111 33344444456678999999986
No 472
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.30 E-value=0.036 Score=49.07 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|+|||||++.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999987
No 473
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.29 E-value=0.45 Score=46.74 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..++|+|..|+|||||.+.+...
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~ 179 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKN 179 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhcc
Confidence 46899999999999999998764
No 474
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=3.9 Score=40.03 Aligned_cols=119 Identities=12% Similarity=0.106 Sum_probs=63.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEE-EE---eCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC--
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVW-YS---VGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHL-- 215 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~---vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~-- 215 (355)
+=--++|++|.|||++..++.|.- +.-++ .. |..+.++..++ .. ...+.+||+.|+.+.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L------~ydIydLeLt~v~~n~dLr~LL--------~~-t~~kSIivIEDIDcs~~ 300 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL------NYDIYDLELTEVKLDSDLRHLL--------LA-TPNKSILLIEDIDCSFD 300 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc------CCceEEeeeccccCcHHHHHHH--------Hh-CCCCcEEEEeecccccc
Confidence 345689999999999999988832 22222 12 22222222222 11 245778888888642
Q ss_pred ----Ch------------hhHHHHHHhhcc--CCCC-CcEE-EEecCChhH---hhhcccCCcccccCCCCChhhHHHHh
Q 036086 216 ----ND------------DNLANLRLLVSD--MRLV-GFYV-LVTTHSTSV---ATMMMQTVPEAEHLIYFSESNSWSNL 272 (355)
Q Consensus 216 ----~~------------~~~~~l~~~l~~--~~~~-gs~I-lvTTR~~~v---a~~~~~~~~~~~~l~~L~~~~s~~Lf 272 (355)
.. -.+..|+..+.. .. . +=|| |.||-..+- |-..-|..+-.+.|.--+.+....||
T Consensus 301 l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs-cg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La 379 (457)
T KOG0743|consen 301 LRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS-CGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLA 379 (457)
T ss_pred cccccccccccccCCcceeehHHhhhhhcccccc-CCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHH
Confidence 00 112223333321 11 1 2354 557766542 22101222345778888888888999
Q ss_pred hhhC
Q 036086 273 NCEL 276 (355)
Q Consensus 273 ~~~a 276 (355)
.+..
T Consensus 380 ~nYL 383 (457)
T KOG0743|consen 380 SNYL 383 (457)
T ss_pred HHhc
Confidence 8875
No 475
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.27 E-value=0.35 Score=42.04 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=57.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC-----ccc------cC-----------CCCceEEEEeCCCCCH------HH--HH
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD-----DDV------KS-----------RLPFKVWYSVGKNLDF------ST--AV 189 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~-----~~~------~~-----------~F~~~~wv~vs~~~~~------~~--i~ 189 (355)
....|-|+|..|-||||.|.-+.-. .++ +. ..+..-|...+..|.. .. ..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 3467889999999999999765320 000 11 1122334444433211 11 11
Q ss_pred HHHHHHHhhcCCC-CcEEEEEeCCCC---CChhhHHHHHHhhccCCCCCcEEEEecCCh
Q 036086 190 QEIRNRRNEIPSS-KRLLFALDDVSH---LNDDNLANLRLLVSDMRLVGFYVLVTTHST 244 (355)
Q Consensus 190 ~~l~~~l~~~l~~-kr~LlVlDdvw~---~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~ 244 (355)
+...+..++.+.. +--|||||.+-. ...-..+++...+.... .+.-||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp-~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARP-GMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC-CCCEEEEECCCC
Confidence 1344445555544 456999999842 12223455555565544 667899999975
No 476
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.27 E-value=0.04 Score=48.71 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.. .+++|+|..|+|||||++.+..
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhC
Confidence 35 8999999999999999999986
No 477
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.26 E-value=0.18 Score=53.00 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=53.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-------HHHHHHhhcC----------CCCc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-------EIRNRRNEIP----------SSKR 204 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-------~l~~~l~~~l----------~~kr 204 (355)
+++.|.|.+|.||||+++.+.+...-... ...++++.+..-....+.. .+...+.... ....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGG-LLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC-CceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccC
Confidence 47889999999999999988763211111 1456666554333333322 1111111000 1234
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEE
Q 036086 205 LLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLV 239 (355)
Q Consensus 205 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Ilv 239 (355)
-+||+|....-+...+..+...++ .|++||+
T Consensus 418 ~llIvDEaSMvd~~~~~~Ll~~~~----~~~rlil 448 (720)
T TIGR01448 418 DLLIVDESSMMDTWLALSLLAALP----DHARLLL 448 (720)
T ss_pred CEEEEeccccCCHHHHHHHHHhCC----CCCEEEE
Confidence 599999987555555666666554 4667776
No 478
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.26 E-value=0.032 Score=47.57 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=17.9
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 036086 144 IHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~ 164 (355)
|.|.|..|+|||||.+.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999998863
No 479
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.25 E-value=0.31 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++|+|..|+|||||++.+..
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g 505 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQR 505 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999865
No 480
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=94.25 E-value=0.04 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCc
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
-|+++|..|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 481
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.24 E-value=0.037 Score=46.17 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-|.|+|.+|+|||||+..+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988754
No 482
>PRK13946 shikimate kinase; Provisional
Probab=94.24 E-value=0.032 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+.|.++|+.|+||||+++.+.+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999987
No 483
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.24 E-value=0.034 Score=44.99 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=17.9
Q ss_pred EEEEcCCCccHHHHHHHHhcCccccCCCC
Q 036086 144 IHIVGVSGTDETAIAHRVFTDDDVKSRLP 172 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~ 172 (355)
|-|.|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 56899999999999999987 4555553
No 484
>PRK13948 shikimate kinase; Provisional
Probab=94.23 E-value=0.037 Score=47.85 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999886
No 485
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=94.23 E-value=0.039 Score=46.38 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.0
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 036086 144 IHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~ 164 (355)
|.|+|.+|+|||||+..+.++
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988765
No 486
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.23 E-value=0.3 Score=44.91 Aligned_cols=125 Identities=15% Similarity=0.216 Sum_probs=69.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceE-EEEeCCCCCHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCChhh
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKV-WYSVGKNLDFSTAVQEIRNRRN-EIPSSKRLLFALDDVSHLNDDN 219 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~i~~~l~~~l~-~~l~~kr~LlVlDdvw~~~~~~ 219 (355)
+=.-++|+||+||+||++.+.. +. +..+ -+.+++.++..+.-.++...+. ..+++++..+++.|-+-.+..-
T Consensus 32 Gh~LLvG~~GsGr~sl~rLaa~---i~---~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~f 105 (268)
T PF12780_consen 32 GHALLVGVGGSGRQSLARLAAF---IC---GYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESF 105 (268)
T ss_dssp EEEEEECTTTSCHHHHHHHHHH---HT---TEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHH
T ss_pred CCeEEecCCCccHHHHHHHHHH---Hh---ccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhH
Confidence 3345999999999999998654 11 1112 2345677777776666655543 4568899999999866545566
Q ss_pred HHHHHHhhccCCCCCcEEEEecCC-hhHhhhcccCCcccccCCCCChhhHHHHhhhhCC
Q 036086 220 LANLRLLVSDMRLVGFYVLVTTHS-TSVATMMMQTVPEAEHLIYFSESNSWSNLNCELP 277 (355)
Q Consensus 220 ~~~l~~~l~~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 277 (355)
++.+...+..+.-+| |.|.-. +.+... +........+ .-+.+..|++|.+++-
T Consensus 106 Le~in~LL~sGeip~---LF~~eE~~~i~~~-l~~~~~~~~~-~~~~~~~~~~F~~rvr 159 (268)
T PF12780_consen 106 LEDINSLLSSGEIPN---LFTKEELDNIISS-LREEAKAEGI-SDSRESLYEFFIERVR 159 (268)
T ss_dssp HHHHHHHHHCSS-TT---TS-TCHHHHHHHH-HHHHHHHCT---SSHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCCC---CccHHHHHHHHHH-hHHHHHHcCC-CCchHHHHHHHHHHHH
Confidence 777766666554122 223221 112211 1110001111 1256778999988763
No 487
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.23 E-value=0.12 Score=47.83 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhHHHHhhc-----hhhHHHHHHHHHHHHHHHHHHHhccc----CChH-HHHHHHHHhhhHhHHHHH-HH
Q 036086 7 ELLDLVCGRLDSQAGAFWN-----NGEMKRLRLNLRDLHNLLRKAKQDAI----LNPL-LTDLNDLASDVDGLIDAR-ME 75 (355)
Q Consensus 7 a~v~~l~~kl~s~~~e~~~-----g~~~~~L~~~L~~i~~~l~~a~~~~~----~~~~-l~~lr~~ayd~eD~lD~~-~~ 75 (355)
+.|..++++|..+...|.. ..+++-++.+|+++|.||+..-.... +++. ..++-..||++|+++|.| ..
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi~k 375 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACISK 375 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhhcC
Confidence 4566777777777333332 28899999999999999998744321 2222 899999999999999999 32
Q ss_pred HHHhhhhhHHhHHHHHhHHHHHHHHH
Q 036086 76 VSKYKFEKKVMKIHQGRLVPLLNSLQ 101 (355)
Q Consensus 76 ~~~~~~~~~~r~~i~~~i~~l~~~l~ 101 (355)
....=+.-.....+..+|..++++++
T Consensus 376 ~~P~Wcl~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 376 SVPHWCLERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21111111145667777777777664
No 488
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.22 E-value=0.044 Score=50.56 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+.+++.++|++|+||||++..+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4568999999999999998888765
No 489
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.21 E-value=0.05 Score=44.91 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..+|+++|..|+|||||...+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998764
No 490
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.21 E-value=0.21 Score=48.46 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHH-HHHhcC
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIA-HRVFTD 164 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa-~~v~~~ 164 (355)
+..++|..||.+. .-..|.|.|+-|+||+.|+ .++.++
T Consensus 3 e~~~~L~~wL~e~--~~TFIvV~GPrGSGK~elV~d~~L~~ 41 (431)
T PF10443_consen 3 EAIEQLKSWLNEN--PNTFIVVQGPRGSGKRELVMDHVLKD 41 (431)
T ss_pred hHHHHHHHHHhcC--CCeEEEEECCCCCCccHHHHHHHHhC
Confidence 4678899999954 4468999999999999999 666554
No 491
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.20 E-value=0.039 Score=46.60 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|.|.|..|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999876
No 492
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.20 E-value=0.072 Score=45.01 Aligned_cols=37 Identities=14% Similarity=0.356 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.+..++|.++|.. +++.++|..|+|||||...+..+.
T Consensus 23 ~~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 23 GEGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CcCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 4567778777763 688999999999999999999864
No 493
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.19 E-value=0.029 Score=50.95 Aligned_cols=21 Identities=14% Similarity=0.447 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 494
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.17 E-value=0.05 Score=44.59 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHhcCc
Q 036086 144 IHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~ 165 (355)
|+|+|..|+|||||.+.+.+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~ 23 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ 23 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC
Confidence 6899999999999999998753
No 495
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.17 E-value=0.045 Score=51.69 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...++.++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 568999999999999999998876
No 496
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.17 E-value=0.041 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCc
Q 036086 144 IHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~ 165 (355)
|.++|.+|+|||||+..+.+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999987653
No 497
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.16 E-value=0.042 Score=43.35 Aligned_cols=21 Identities=10% Similarity=0.316 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 036086 144 IHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~ 164 (355)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 498
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.15 E-value=0.033 Score=51.30 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+.|+|+|-||+||||++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 3689999999999998887654
No 499
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.13 E-value=0.16 Score=46.95 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=57.7
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhcCcc---ccCCCCceEEEEeCCCCCHHHHHH---HHHHHHhhcCC-CCcEEEEEe
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFTDDD---VKSRLPFKVWYSVGKNLDFSTAVQ---EIRNRRNEIPS-SKRLLFALD 210 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~~~~---~~~~F~~~~wv~vs~~~~~~~i~~---~l~~~l~~~l~-~kr~LlVlD 210 (355)
..++=+++..|..|+||.-.++.|.++-. .++.| ...+|..-.-++...+.. ++...++..++ -+|-|+|+|
T Consensus 107 p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~-V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFD 185 (344)
T KOG2170|consen 107 PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPF-VHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFD 185 (344)
T ss_pred CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchh-HHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEec
Confidence 45566999999999999999988876431 11122 111222222334444333 56666655554 489999999
Q ss_pred CCCCCChhhHHHHHHhhc
Q 036086 211 DVSHLNDDNLANLRLLVS 228 (355)
Q Consensus 211 dvw~~~~~~~~~l~~~l~ 228 (355)
++........+.|.+.+.
T Consensus 186 E~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 186 EVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhhhcCHhHHHHHhhhhc
Confidence 998767777888776665
No 500
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.12 E-value=0.035 Score=48.00 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 036086 144 IHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~ 163 (355)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999876
Done!