Query 036086
Match_columns 355
No_of_seqs 245 out of 2188
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 15:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.8E-39 9.7E-44 325.0 14.7 217 123-350 133-405 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.9E-32 9.8E-37 282.9 7.4 206 124-351 134-388 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1E-30 3.4E-35 284.3 17.6 214 124-351 130-396 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.9 5.6E-28 1.9E-32 244.6 12.0 210 124-350 130-395 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.5 4.5E-14 1.5E-18 111.8 8.9 72 7-78 1-84 (115)
6 1njg_A DNA polymerase III subu 99.2 6.9E-11 2.4E-15 104.1 13.1 178 124-307 29-227 (250)
7 1w5s_A Origin recognition comp 99.2 4.9E-11 1.7E-15 114.5 8.4 178 124-304 28-262 (412)
8 2qen_A Walker-type ATPase; unk 99.1 5.7E-10 1.9E-14 104.3 12.7 171 124-309 18-247 (350)
9 2fna_A Conserved hypothetical 99.1 3.5E-10 1.2E-14 106.0 11.2 168 124-309 19-251 (357)
10 2chg_A Replication factor C sm 99.1 1.4E-09 4.7E-14 94.5 14.1 177 124-308 23-205 (226)
11 2qby_B CDC6 homolog 3, cell di 99.0 1.6E-09 5.4E-14 102.9 9.6 181 124-308 26-246 (384)
12 1sxj_B Activator 1 37 kDa subu 98.9 3.8E-09 1.3E-13 97.7 10.7 176 124-308 27-210 (323)
13 2v1u_A Cell division control p 98.9 1.1E-08 3.7E-13 96.9 12.6 178 124-307 25-249 (387)
14 1fnn_A CDC6P, cell division co 98.9 1.5E-08 5.2E-13 96.1 12.5 171 124-297 23-227 (389)
15 2qby_A CDC6 homolog 1, cell di 98.9 7.9E-09 2.7E-13 97.7 10.1 171 124-303 26-240 (386)
16 1iqp_A RFCS; clamp loader, ext 98.6 7.1E-08 2.4E-12 89.2 8.6 173 124-304 31-208 (327)
17 1jr3_A DNA polymerase III subu 98.5 1E-06 3.5E-11 83.1 13.3 175 124-304 22-217 (373)
18 2z4s_A Chromosomal replication 98.4 2E-07 6.8E-12 90.6 5.6 151 141-301 130-299 (440)
19 3bos_A Putative DNA replicatio 98.4 2.6E-07 9E-12 81.3 5.7 163 125-304 38-213 (242)
20 1a5t_A Delta prime, HOLB; zinc 98.3 1.4E-05 4.7E-10 74.7 15.2 169 124-304 8-201 (334)
21 1jbk_A CLPB protein; beta barr 98.3 1.7E-07 5.9E-12 79.1 2.0 144 124-272 28-194 (195)
22 2chq_A Replication factor C sm 98.3 2.4E-06 8.1E-11 78.5 9.8 173 124-304 23-200 (319)
23 1hqc_A RUVB; extended AAA-ATPa 98.3 9.8E-06 3.3E-10 74.8 13.3 169 124-305 18-208 (324)
24 3pvs_A Replication-associated 98.2 1E-05 3.6E-10 78.6 12.1 162 128-301 39-208 (447)
25 1sxj_E Activator 1 40 kDa subu 98.1 7.7E-06 2.6E-10 76.6 10.0 98 202-303 133-232 (354)
26 2qz4_A Paraplegin; AAA+, SPG7, 98.1 4.1E-05 1.4E-09 68.2 13.5 156 141-302 39-215 (262)
27 1sxj_D Activator 1 41 kDa subu 98.1 1.1E-05 3.7E-10 75.3 10.0 173 124-303 43-230 (353)
28 3ec2_A DNA replication protein 98.0 1.4E-05 4.9E-10 67.4 8.4 95 141-243 38-142 (180)
29 1l8q_A Chromosomal replication 98.0 1.6E-05 5.4E-10 73.7 8.5 140 128-276 24-179 (324)
30 1d2n_A N-ethylmaleimide-sensit 98.0 3.6E-05 1.2E-09 69.4 10.5 150 138-300 61-229 (272)
31 3h4m_A Proteasome-activating n 98.0 3.1E-05 1.1E-09 70.1 10.0 167 124-300 23-222 (285)
32 1sxj_C Activator 1 40 kDa subu 98.0 5E-05 1.7E-09 70.8 11.6 170 124-302 31-206 (340)
33 3te6_A Regulatory protein SIR3 98.0 5.2E-05 1.8E-09 70.2 11.3 180 124-308 26-280 (318)
34 3syl_A Protein CBBX; photosynt 97.9 9.6E-06 3.3E-10 74.4 6.2 132 141-276 67-217 (309)
35 3pfi_A Holliday junction ATP-d 97.9 6.6E-05 2.2E-09 69.8 12.0 166 124-302 35-221 (338)
36 2w58_A DNAI, primosome compone 97.9 6.8E-06 2.3E-10 70.6 4.6 53 126-180 37-91 (202)
37 1sxj_A Activator 1 95 kDa subu 97.9 3.8E-05 1.3E-09 76.1 10.6 172 124-308 45-253 (516)
38 3uk6_A RUVB-like 2; hexameric 97.8 0.00011 3.6E-09 69.1 11.5 94 204-302 190-297 (368)
39 3u61_B DNA polymerase accessor 97.8 0.00015 5.1E-09 67.0 11.8 176 124-310 32-219 (324)
40 3n70_A Transport activator; si 97.8 7E-05 2.4E-09 60.9 8.4 88 144-243 27-115 (145)
41 2p65_A Hypothetical protein PF 97.8 3.8E-05 1.3E-09 64.3 6.9 38 124-163 28-65 (187)
42 2kjq_A DNAA-related protein; s 97.8 2E-05 7E-10 64.7 5.1 87 141-243 36-124 (149)
43 2gno_A DNA polymerase III, gam 97.8 0.0002 6.8E-09 66.0 11.6 142 127-276 6-152 (305)
44 3eie_A Vacuolar protein sortin 97.6 0.00064 2.2E-08 62.8 12.2 167 124-301 24-220 (322)
45 3co5_A Putative two-component 97.5 0.00013 4.6E-09 59.1 6.3 85 144-242 30-114 (143)
46 3cf0_A Transitional endoplasmi 97.5 0.0012 4.1E-08 60.4 12.6 147 140-302 48-222 (301)
47 2qp9_X Vacuolar protein sortin 97.4 0.00084 2.9E-08 63.0 11.0 149 142-301 85-253 (355)
48 2bjv_A PSP operon transcriptio 97.4 0.00089 3E-08 59.8 10.6 115 125-243 13-150 (265)
49 2zan_A Vacuolar protein sortin 97.4 0.001 3.5E-08 64.4 11.4 169 124-301 140-337 (444)
50 3d8b_A Fidgetin-like protein 1 97.4 0.001 3.6E-08 62.4 11.0 172 124-306 90-293 (357)
51 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00083 2.8E-08 62.2 9.9 151 141-301 45-215 (322)
52 4fcw_A Chaperone protein CLPB; 97.3 0.00069 2.4E-08 61.8 8.7 83 141-228 47-144 (311)
53 2qgz_A Helicase loader, putati 97.3 0.00038 1.3E-08 64.1 6.5 36 129-164 139-175 (308)
54 3vfd_A Spastin; ATPase, microt 97.2 0.003 1E-07 59.9 12.6 172 124-306 121-324 (389)
55 2cvh_A DNA repair and recombin 97.2 0.0012 4.2E-08 56.7 9.0 68 142-214 21-116 (220)
56 1qvr_A CLPB protein; coiled co 97.2 0.00096 3.3E-08 70.0 9.5 143 124-274 176-343 (854)
57 1in4_A RUVB, holliday junction 97.2 0.0032 1.1E-07 58.4 12.0 150 140-303 50-218 (334)
58 3b9p_A CG5977-PA, isoform A; A 97.2 0.0072 2.5E-07 54.7 14.1 148 141-302 54-226 (297)
59 3hu3_A Transitional endoplasmi 97.1 0.002 6.8E-08 63.1 10.5 150 141-301 238-407 (489)
60 4a74_A DNA repair and recombin 97.1 0.0029 9.9E-08 54.8 10.0 43 142-184 26-72 (231)
61 3pxi_A Negative regulator of g 97.0 0.0015 5E-08 67.7 8.6 146 124-275 497-674 (758)
62 1ojl_A Transcriptional regulat 97.0 0.0068 2.3E-07 55.5 12.2 110 126-243 10-146 (304)
63 1lv7_A FTSH; alpha/beta domain 97.0 0.00098 3.4E-08 59.2 6.4 128 143-276 47-195 (257)
64 2x8a_A Nuclear valosin-contain 97.0 0.0075 2.6E-07 54.4 12.1 128 144-276 47-191 (274)
65 3pxg_A Negative regulator of g 97.0 0.0011 3.9E-08 64.6 7.0 141 124-276 186-338 (468)
66 3t15_A Ribulose bisphosphate c 96.9 0.0038 1.3E-07 56.9 10.0 24 140-163 35-58 (293)
67 1ofh_A ATP-dependent HSL prote 96.9 0.00075 2.6E-08 61.4 5.1 129 141-275 50-214 (310)
68 2ce7_A Cell division protein F 96.9 0.0034 1.2E-07 61.2 9.6 128 143-276 51-199 (476)
69 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0035 1.2E-07 64.7 9.3 144 124-275 192-361 (758)
70 4b4t_J 26S protease regulatory 96.8 0.011 3.7E-07 56.3 11.6 148 141-301 182-354 (405)
71 2c9o_A RUVB-like 1; hexameric 96.6 0.0083 2.8E-07 58.1 10.3 94 206-304 298-406 (456)
72 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0026 8.9E-08 58.6 6.1 63 142-214 124-193 (331)
73 4b4t_L 26S protease subunit RP 96.6 0.026 8.8E-07 54.3 13.3 149 140-301 214-387 (437)
74 3c8u_A Fructokinase; YP_612366 96.6 0.0018 6E-08 55.8 4.4 36 128-163 9-44 (208)
75 3pxi_A Negative regulator of g 96.5 0.0035 1.2E-07 64.8 7.2 142 124-276 186-338 (758)
76 1rz3_A Hypothetical protein rb 96.5 0.0029 1E-07 54.1 5.5 38 126-163 6-44 (201)
77 3cf2_A TER ATPase, transitiona 96.5 0.026 8.9E-07 58.4 13.0 151 140-301 237-407 (806)
78 1tue_A Replication protein E1; 96.4 0.00091 3.1E-08 57.6 1.7 36 127-163 45-80 (212)
79 3ice_A Transcription terminati 96.4 0.0036 1.2E-07 59.1 5.8 35 128-163 162-196 (422)
80 1n0w_A DNA repair protein RAD5 96.4 0.0054 1.8E-07 53.5 6.7 45 142-186 25-73 (243)
81 3jvv_A Twitching mobility prot 96.4 0.003 1E-07 59.3 5.3 96 142-249 124-236 (356)
82 3m6a_A ATP-dependent protease 96.4 0.0035 1.2E-07 62.3 6.0 129 140-275 107-265 (543)
83 1r6b_X CLPA protein; AAA+, N-t 96.4 0.022 7.4E-07 58.8 12.2 81 141-229 488-583 (758)
84 2dhr_A FTSH; AAA+ protein, hex 96.4 0.025 8.4E-07 55.5 11.7 128 144-276 67-214 (499)
85 1g8p_A Magnesium-chelatase 38 96.3 0.0077 2.6E-07 55.7 7.7 20 144-163 48-67 (350)
86 4b4t_H 26S protease regulatory 96.3 0.011 3.7E-07 57.2 8.6 151 139-301 241-415 (467)
87 3lw7_A Adenylate kinase relate 96.3 0.002 6.9E-08 53.0 3.1 20 142-161 2-21 (179)
88 2r44_A Uncharacterized protein 96.3 0.018 6.1E-07 53.0 9.9 143 124-276 33-198 (331)
89 1odf_A YGR205W, hypothetical 3 96.2 0.0044 1.5E-07 56.5 5.1 26 138-163 28-53 (290)
90 1qvr_A CLPB protein; coiled co 96.2 0.018 6.1E-07 60.3 10.3 98 141-243 588-710 (854)
91 4b4t_I 26S protease regulatory 96.2 0.053 1.8E-06 51.9 12.4 149 140-301 215-388 (437)
92 1zp6_A Hypothetical protein AT 96.1 0.003 1E-07 53.1 3.3 24 141-164 9-32 (191)
93 1um8_A ATP-dependent CLP prote 96.1 0.031 1.1E-06 52.4 10.7 22 142-163 73-94 (376)
94 3hr8_A Protein RECA; alpha and 96.1 0.0088 3E-07 56.0 6.6 70 142-213 62-149 (356)
95 1ixz_A ATP-dependent metallopr 96.1 0.01 3.4E-07 52.5 6.6 148 144-301 52-221 (254)
96 3kb2_A SPBC2 prophage-derived 96.1 0.0027 9.4E-08 52.2 2.7 22 142-163 2-23 (173)
97 1v5w_A DMC1, meiotic recombina 96.0 0.014 4.8E-07 54.3 7.8 51 140-190 121-175 (343)
98 1ly1_A Polynucleotide kinase; 96.0 0.0035 1.2E-07 52.0 3.1 22 142-163 3-24 (181)
99 2z43_A DNA repair and recombin 96.0 0.013 4.6E-07 54.0 7.4 48 142-189 108-159 (324)
100 1jr3_D DNA polymerase III, del 96.0 0.084 2.9E-06 48.7 12.7 157 140-304 17-181 (343)
101 3l0o_A Transcription terminati 96.0 0.016 5.3E-07 54.7 7.5 36 127-163 162-197 (427)
102 1kgd_A CASK, peripheral plasma 96.0 0.0034 1.2E-07 52.6 2.9 22 142-163 6-27 (180)
103 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.046 1.6E-06 53.5 11.2 140 124-276 28-196 (500)
104 4gp7_A Metallophosphoesterase; 95.9 0.0046 1.6E-07 51.4 3.5 22 141-162 9-30 (171)
105 1qhx_A CPT, protein (chloramph 95.9 0.0038 1.3E-07 51.8 2.9 22 142-163 4-25 (178)
106 3vaa_A Shikimate kinase, SK; s 95.9 0.0037 1.3E-07 53.3 2.8 23 141-163 25-47 (199)
107 3uie_A Adenylyl-sulfate kinase 95.9 0.0049 1.7E-07 52.5 3.5 25 139-163 23-47 (200)
108 1gvn_B Zeta; postsegregational 95.8 0.0083 2.8E-07 54.4 5.1 36 128-163 17-55 (287)
109 3io5_A Recombination and repai 95.8 0.038 1.3E-06 50.8 9.4 72 143-214 30-122 (333)
110 1iy2_A ATP-dependent metallopr 95.8 0.012 4.1E-07 52.8 6.1 148 144-301 76-245 (278)
111 1kag_A SKI, shikimate kinase I 95.8 0.0035 1.2E-07 51.8 2.3 22 142-163 5-26 (173)
112 3tr0_A Guanylate kinase, GMP k 95.8 0.0046 1.6E-07 52.5 3.1 22 142-163 8-29 (205)
113 2b8t_A Thymidine kinase; deoxy 95.8 0.019 6.4E-07 50.1 7.0 98 141-244 12-126 (223)
114 2p5t_B PEZT; postsegregational 95.8 0.0076 2.6E-07 53.5 4.6 37 127-163 15-54 (253)
115 1xp8_A RECA protein, recombina 95.8 0.018 6.2E-07 54.1 7.2 70 142-213 75-162 (366)
116 3asz_A Uridine kinase; cytidin 95.8 0.0055 1.9E-07 52.5 3.4 24 140-163 5-28 (211)
117 1ex7_A Guanylate kinase; subst 95.8 0.0041 1.4E-07 52.8 2.5 21 143-163 3-23 (186)
118 2i1q_A DNA repair and recombin 95.7 0.014 4.6E-07 53.7 6.1 50 141-190 98-161 (322)
119 1nks_A Adenylate kinase; therm 95.7 0.0053 1.8E-07 51.4 3.0 22 142-163 2-23 (194)
120 2bdt_A BH3686; alpha-beta prot 95.7 0.0061 2.1E-07 51.3 3.3 22 142-163 3-24 (189)
121 1knq_A Gluconate kinase; ALFA/ 95.7 0.0064 2.2E-07 50.4 3.4 23 141-163 8-30 (175)
122 1uf9_A TT1252 protein; P-loop, 95.7 0.0065 2.2E-07 51.4 3.5 26 138-163 5-30 (203)
123 2zr9_A Protein RECA, recombina 95.7 0.017 5.7E-07 54.0 6.5 70 142-213 62-149 (349)
124 2qt1_A Nicotinamide riboside k 95.7 0.007 2.4E-07 51.7 3.6 24 140-163 20-43 (207)
125 3trf_A Shikimate kinase, SK; a 95.6 0.0055 1.9E-07 51.2 2.9 23 141-163 5-27 (185)
126 2rhm_A Putative kinase; P-loop 95.6 0.0068 2.3E-07 50.9 3.4 23 141-163 5-27 (193)
127 4eun_A Thermoresistant glucoki 95.6 0.006 2.1E-07 52.0 3.0 24 140-163 28-51 (200)
128 1pzn_A RAD51, DNA repair and r 95.6 0.022 7.5E-07 53.2 7.1 44 141-184 131-178 (349)
129 3a00_A Guanylate kinase, GMP k 95.6 0.0049 1.7E-07 51.9 2.4 22 142-163 2-23 (186)
130 1ypw_A Transitional endoplasmi 95.6 0.027 9.3E-07 58.5 8.4 129 141-276 238-385 (806)
131 2j41_A Guanylate kinase; GMP, 95.6 0.006 2.1E-07 51.8 2.9 22 142-163 7-28 (207)
132 2ewv_A Twitching motility prot 95.6 0.01 3.5E-07 56.0 4.7 96 140-248 135-248 (372)
133 3tqc_A Pantothenate kinase; bi 95.6 0.015 5E-07 53.7 5.7 26 138-163 89-114 (321)
134 3tau_A Guanylate kinase, GMP k 95.6 0.0068 2.3E-07 52.1 3.2 23 141-163 8-30 (208)
135 3t61_A Gluconokinase; PSI-biol 95.5 0.0051 1.7E-07 52.4 2.3 23 141-163 18-40 (202)
136 2jaq_A Deoxyguanosine kinase; 95.5 0.0063 2.2E-07 51.5 2.9 21 143-163 2-22 (205)
137 1cke_A CK, MSSA, protein (cyti 95.5 0.0067 2.3E-07 52.5 3.1 22 142-163 6-27 (227)
138 1kht_A Adenylate kinase; phosp 95.5 0.0065 2.2E-07 50.8 2.9 22 142-163 4-25 (192)
139 1ukz_A Uridylate kinase; trans 95.5 0.0082 2.8E-07 51.0 3.5 25 139-163 13-37 (203)
140 1ye8_A Protein THEP1, hypothet 95.5 0.0075 2.6E-07 50.7 3.1 21 143-163 2-22 (178)
141 1tev_A UMP-CMP kinase; ploop, 95.5 0.0076 2.6E-07 50.5 3.1 23 141-163 3-25 (196)
142 1jjv_A Dephospho-COA kinase; P 95.5 0.0085 2.9E-07 51.1 3.5 22 142-163 3-24 (206)
143 2if2_A Dephospho-COA kinase; a 95.5 0.0067 2.3E-07 51.6 2.8 22 142-163 2-23 (204)
144 2qor_A Guanylate kinase; phosp 95.4 0.0058 2E-07 52.2 2.4 24 140-163 11-34 (204)
145 1lvg_A Guanylate kinase, GMP k 95.4 0.0058 2E-07 52.1 2.3 22 142-163 5-26 (198)
146 2yvu_A Probable adenylyl-sulfa 95.4 0.0091 3.1E-07 50.1 3.5 24 140-163 12-35 (186)
147 2ze6_A Isopentenyl transferase 95.4 0.0076 2.6E-07 53.6 3.1 22 142-163 2-23 (253)
148 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.021 7.1E-07 52.9 6.1 97 142-247 172-278 (330)
149 1sky_E F1-ATPase, F1-ATP synth 95.4 0.017 6E-07 55.8 5.7 40 143-183 153-192 (473)
150 2bbw_A Adenylate kinase 4, AK4 95.4 0.0078 2.7E-07 53.0 3.0 23 141-163 27-49 (246)
151 3aez_A Pantothenate kinase; tr 95.4 0.0092 3.1E-07 54.9 3.6 25 139-163 88-112 (312)
152 1znw_A Guanylate kinase, GMP k 95.3 0.0088 3E-07 51.3 3.1 22 142-163 21-42 (207)
153 1u94_A RECA protein, recombina 95.3 0.02 7E-07 53.6 5.9 43 142-186 64-106 (356)
154 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.0089 3E-07 53.3 3.2 23 141-163 4-26 (260)
155 1xjc_A MOBB protein homolog; s 95.3 0.0086 3E-07 49.9 2.9 24 140-163 3-26 (169)
156 3iij_A Coilin-interacting nucl 95.3 0.0066 2.3E-07 50.6 2.3 23 141-163 11-33 (180)
157 2c95_A Adenylate kinase 1; tra 95.3 0.008 2.7E-07 50.5 2.8 23 141-163 9-31 (196)
158 3upu_A ATP-dependent DNA helic 95.3 0.056 1.9E-06 52.3 9.1 93 143-241 47-162 (459)
159 2orw_A Thymidine kinase; TMTK, 95.3 0.0032 1.1E-07 53.3 0.1 22 142-163 4-25 (184)
160 1zuh_A Shikimate kinase; alpha 95.3 0.0084 2.9E-07 49.3 2.7 24 140-163 6-29 (168)
161 2jeo_A Uridine-cytidine kinase 95.3 0.011 3.7E-07 52.1 3.5 24 140-163 24-47 (245)
162 4b4t_M 26S protease regulatory 95.3 0.02 7E-07 55.0 5.7 150 140-301 214-387 (434)
163 3cm0_A Adenylate kinase; ATP-b 95.2 0.011 3.6E-07 49.4 3.3 22 142-163 5-26 (186)
164 2hf9_A Probable hydrogenase ni 95.2 0.016 5.4E-07 50.0 4.5 26 139-164 36-61 (226)
165 1g5t_A COB(I)alamin adenosyltr 95.2 0.069 2.4E-06 45.5 8.2 53 191-244 107-163 (196)
166 2plr_A DTMP kinase, probable t 95.2 0.01 3.5E-07 50.5 3.1 22 142-163 5-26 (213)
167 1qf9_A UMP/CMP kinase, protein 95.2 0.01 3.5E-07 49.6 3.1 23 141-163 6-28 (194)
168 1y63_A LMAJ004144AAA protein; 95.2 0.011 3.8E-07 49.6 3.1 23 141-163 10-32 (184)
169 1sq5_A Pantothenate kinase; P- 95.2 0.024 8.1E-07 51.9 5.6 25 139-163 78-102 (308)
170 2iyv_A Shikimate kinase, SK; t 95.1 0.0076 2.6E-07 50.4 2.1 22 142-163 3-24 (184)
171 1via_A Shikimate kinase; struc 95.1 0.0094 3.2E-07 49.4 2.6 21 143-163 6-26 (175)
172 1rj9_A FTSY, signal recognitio 95.1 0.011 3.6E-07 54.3 3.2 24 140-163 101-124 (304)
173 3e70_C DPA, signal recognition 95.1 0.017 5.7E-07 53.5 4.6 25 139-163 127-151 (328)
174 3dm5_A SRP54, signal recogniti 95.1 0.041 1.4E-06 52.9 7.3 24 140-163 99-122 (443)
175 1z6g_A Guanylate kinase; struc 95.1 0.0092 3.1E-07 51.7 2.6 22 142-163 24-45 (218)
176 4e22_A Cytidylate kinase; P-lo 95.1 0.011 3.7E-07 52.5 3.1 23 141-163 27-49 (252)
177 2bwj_A Adenylate kinase 5; pho 95.1 0.01 3.5E-07 50.0 2.8 22 142-163 13-34 (199)
178 1htw_A HI0065; nucleotide-bind 95.1 0.013 4.6E-07 48.1 3.4 24 140-163 32-55 (158)
179 2wsm_A Hydrogenase expression/ 95.1 0.014 4.9E-07 50.0 3.7 26 139-164 28-53 (221)
180 2ck3_D ATP synthase subunit be 95.1 0.049 1.7E-06 52.7 7.7 53 129-183 142-194 (482)
181 2cdn_A Adenylate kinase; phosp 95.1 0.012 4.1E-07 50.0 3.1 24 140-163 19-42 (201)
182 1uj2_A Uridine-cytidine kinase 95.1 0.013 4.4E-07 51.9 3.4 25 139-163 20-44 (252)
183 2pbr_A DTMP kinase, thymidylat 95.0 0.011 3.9E-07 49.5 2.9 21 143-163 2-22 (195)
184 1gtv_A TMK, thymidylate kinase 95.0 0.0068 2.3E-07 51.8 1.4 21 143-163 2-22 (214)
185 1e6c_A Shikimate kinase; phosp 95.0 0.0095 3.3E-07 49.0 2.3 22 142-163 3-24 (173)
186 2f1r_A Molybdopterin-guanine d 95.0 0.0082 2.8E-07 50.2 1.8 22 142-163 3-24 (171)
187 3p32_A Probable GTPase RV1496/ 95.0 0.024 8.3E-07 52.9 5.3 37 127-163 65-101 (355)
188 2pt5_A Shikimate kinase, SK; a 95.0 0.012 4.2E-07 48.2 2.9 21 143-163 2-22 (168)
189 2ga8_A Hypothetical 39.9 kDa p 95.0 0.025 8.6E-07 52.8 5.2 37 127-163 8-46 (359)
190 3umf_A Adenylate kinase; rossm 95.0 0.014 4.9E-07 50.6 3.4 25 139-163 27-51 (217)
191 2vli_A Antibiotic resistance p 94.9 0.0089 3E-07 49.7 2.0 23 141-163 5-27 (183)
192 3ney_A 55 kDa erythrocyte memb 94.9 0.013 4.5E-07 50.1 2.9 24 140-163 18-41 (197)
193 2f6r_A COA synthase, bifunctio 94.9 0.016 5.3E-07 52.4 3.6 24 139-162 73-96 (281)
194 4b4t_K 26S protease regulatory 94.9 0.02 6.9E-07 54.9 4.5 152 140-301 205-379 (428)
195 2ehv_A Hypothetical protein PH 94.9 0.014 4.7E-07 51.1 3.1 21 142-162 31-51 (251)
196 3tif_A Uncharacterized ABC tra 94.9 0.014 4.8E-07 51.3 3.1 22 142-163 32-53 (235)
197 1nn5_A Similar to deoxythymidy 94.9 0.013 4.5E-07 50.0 2.9 23 141-163 9-31 (215)
198 1vma_A Cell division protein F 94.9 0.024 8.1E-07 51.9 4.7 24 140-163 103-126 (306)
199 1aky_A Adenylate kinase; ATP:A 94.8 0.013 4.5E-07 50.6 2.8 23 141-163 4-26 (220)
200 2grj_A Dephospho-COA kinase; T 94.8 0.016 5.5E-07 49.3 3.3 24 140-163 11-34 (192)
201 1s96_A Guanylate kinase, GMP k 94.8 0.015 5E-07 50.6 3.1 23 141-163 16-38 (219)
202 3fwy_A Light-independent proto 94.8 0.016 5.3E-07 53.4 3.4 24 139-162 46-69 (314)
203 2z0h_A DTMP kinase, thymidylat 94.8 0.014 4.8E-07 49.1 2.9 21 143-163 2-22 (197)
204 3lda_A DNA repair protein RAD5 94.8 0.051 1.7E-06 51.7 7.0 46 142-187 179-228 (400)
205 3b9q_A Chloroplast SRP recepto 94.8 0.017 5.8E-07 52.8 3.6 24 140-163 99-122 (302)
206 3vr4_D V-type sodium ATPase su 94.8 0.025 8.7E-07 54.4 4.9 37 144-182 154-194 (465)
207 2pcj_A ABC transporter, lipopr 94.8 0.015 5.1E-07 50.7 3.0 22 142-163 31-52 (224)
208 2onk_A Molybdate/tungstate ABC 94.8 0.015 5.2E-07 51.3 3.1 22 142-163 25-46 (240)
209 1vht_A Dephospho-COA kinase; s 94.8 0.019 6.4E-07 49.4 3.6 23 141-163 4-26 (218)
210 2i3b_A HCR-ntpase, human cance 94.7 0.014 4.6E-07 49.6 2.6 21 143-163 3-23 (189)
211 2yhs_A FTSY, cell division pro 94.7 0.03 1E-06 54.6 5.2 24 140-163 292-315 (503)
212 2wwf_A Thymidilate kinase, put 94.7 0.015 5.1E-07 49.6 2.8 23 141-163 10-32 (212)
213 1zu4_A FTSY; GTPase, signal re 94.7 0.035 1.2E-06 51.2 5.4 25 139-163 103-127 (320)
214 2pez_A Bifunctional 3'-phospho 94.7 0.017 5.9E-07 48.0 3.1 23 141-163 5-27 (179)
215 1m7g_A Adenylylsulfate kinase; 94.7 0.019 6.4E-07 49.3 3.4 24 140-163 24-47 (211)
216 2r9v_A ATP synthase subunit al 94.7 0.034 1.1E-06 54.2 5.4 77 129-212 164-276 (515)
217 3lnc_A Guanylate kinase, GMP k 94.6 0.011 3.9E-07 51.4 1.9 21 142-162 28-48 (231)
218 1zd8_A GTP:AMP phosphotransfer 94.6 0.016 5.3E-07 50.4 2.8 23 141-163 7-29 (227)
219 2cbz_A Multidrug resistance-as 94.6 0.018 6E-07 50.7 3.1 22 142-163 32-53 (237)
220 3tlx_A Adenylate kinase 2; str 94.6 0.028 9.7E-07 49.4 4.4 25 139-163 27-51 (243)
221 2r8r_A Sensor protein; KDPD, P 94.6 0.12 4E-06 45.1 8.2 96 143-244 8-127 (228)
222 2v54_A DTMP kinase, thymidylat 94.6 0.017 5.8E-07 48.9 2.9 22 142-163 5-26 (204)
223 3b85_A Phosphate starvation-in 94.6 0.015 5.1E-07 50.2 2.5 22 142-163 23-44 (208)
224 2xxa_A Signal recognition part 94.6 0.031 1.1E-06 53.7 5.0 38 126-163 78-122 (433)
225 1b0u_A Histidine permease; ABC 94.6 0.018 6.2E-07 51.5 3.1 22 142-163 33-54 (262)
226 3gfo_A Cobalt import ATP-bindi 94.6 0.018 6.2E-07 51.9 3.1 22 142-163 35-56 (275)
227 3fb4_A Adenylate kinase; psych 94.5 0.019 6.5E-07 49.2 3.1 21 143-163 2-22 (216)
228 1fx0_A ATP synthase alpha chai 94.5 0.035 1.2E-06 54.1 5.2 65 143-213 165-265 (507)
229 1fx0_B ATP synthase beta chain 94.5 0.083 2.9E-06 51.3 7.8 53 130-184 155-207 (498)
230 1ji0_A ABC transporter; ATP bi 94.5 0.019 6.6E-07 50.6 3.1 22 142-163 33-54 (240)
231 1zak_A Adenylate kinase; ATP:A 94.5 0.014 4.9E-07 50.4 2.3 23 141-163 5-27 (222)
232 2ck3_A ATP synthase subunit al 94.5 0.051 1.8E-06 52.9 6.3 82 129-213 151-272 (510)
233 1g6h_A High-affinity branched- 94.5 0.02 6.7E-07 51.1 3.1 22 142-163 34-55 (257)
234 2px0_A Flagellar biosynthesis 94.5 0.019 6.5E-07 52.3 3.1 24 140-163 104-127 (296)
235 1mv5_A LMRA, multidrug resista 94.5 0.022 7.4E-07 50.3 3.3 22 142-163 29-50 (243)
236 4g1u_C Hemin import ATP-bindin 94.4 0.02 6.9E-07 51.3 3.1 22 142-163 38-59 (266)
237 2qe7_A ATP synthase subunit al 94.4 0.038 1.3E-06 53.7 5.1 77 129-212 151-263 (502)
238 2d2e_A SUFC protein; ABC-ATPas 94.4 0.021 7.2E-07 50.6 3.1 22 142-163 30-51 (250)
239 1np6_A Molybdopterin-guanine d 94.4 0.019 6.5E-07 48.0 2.7 23 141-163 6-28 (174)
240 2pze_A Cystic fibrosis transme 94.4 0.021 7.2E-07 49.9 3.1 22 142-163 35-56 (229)
241 2olj_A Amino acid ABC transpor 94.4 0.021 7.1E-07 51.1 3.1 22 142-163 51-72 (263)
242 2ff7_A Alpha-hemolysin translo 94.4 0.021 7.3E-07 50.5 3.1 22 142-163 36-57 (247)
243 3dl0_A Adenylate kinase; phosp 94.4 0.022 7.4E-07 48.9 3.1 21 143-163 2-22 (216)
244 2og2_A Putative signal recogni 94.4 0.024 8.1E-07 53.2 3.6 24 140-163 156-179 (359)
245 3oaa_A ATP synthase subunit al 94.4 0.066 2.2E-06 52.0 6.7 78 129-213 151-264 (513)
246 1sgw_A Putative ABC transporte 94.4 0.018 6.3E-07 49.8 2.5 22 142-163 36-57 (214)
247 3thx_A DNA mismatch repair pro 94.3 0.16 5.4E-06 53.5 9.9 105 140-249 661-790 (934)
248 1vpl_A ABC transporter, ATP-bi 94.3 0.022 7.7E-07 50.7 3.1 22 142-163 42-63 (256)
249 2ixe_A Antigen peptide transpo 94.3 0.023 7.8E-07 51.1 3.1 22 142-163 46-67 (271)
250 3ake_A Cytidylate kinase; CMP 94.3 0.023 8E-07 48.1 3.1 21 143-163 4-24 (208)
251 2zu0_C Probable ATP-dependent 94.3 0.023 7.8E-07 51.0 3.1 22 142-163 47-68 (267)
252 2ghi_A Transport protein; mult 94.3 0.023 7.9E-07 50.7 3.1 22 142-163 47-68 (260)
253 3mfy_A V-type ATP synthase alp 94.3 0.1 3.6E-06 51.3 7.8 78 129-213 216-334 (588)
254 3d3q_A TRNA delta(2)-isopenten 94.2 0.023 8E-07 52.7 3.1 22 142-163 8-29 (340)
255 3nwj_A ATSK2; P loop, shikimat 94.2 0.018 6.3E-07 51.1 2.3 22 142-163 49-70 (250)
256 3kl4_A SRP54, signal recogniti 94.2 0.037 1.3E-06 53.1 4.6 24 140-163 96-119 (433)
257 2yz2_A Putative ABC transporte 94.2 0.024 8.4E-07 50.7 3.1 22 142-163 34-55 (266)
258 2wji_A Ferrous iron transport 94.2 0.041 1.4E-06 44.8 4.2 23 142-164 4-26 (165)
259 2qi9_C Vitamin B12 import ATP- 94.2 0.025 8.6E-07 50.2 3.1 22 142-163 27-48 (249)
260 2nq2_C Hypothetical ABC transp 94.1 0.026 8.8E-07 50.2 3.1 22 142-163 32-53 (253)
261 2ihy_A ABC transporter, ATP-bi 94.1 0.025 8.7E-07 51.0 3.1 22 142-163 48-69 (279)
262 2vp4_A Deoxynucleoside kinase; 94.1 0.028 9.5E-07 49.0 3.2 25 139-163 18-42 (230)
263 2zej_A Dardarin, leucine-rich 94.1 0.027 9.2E-07 46.8 3.0 22 143-164 4-25 (184)
264 2ged_A SR-beta, signal recogni 94.1 0.033 1.1E-06 46.4 3.5 26 140-165 47-72 (193)
265 2eyu_A Twitching motility prot 94.1 0.03 1E-06 50.0 3.4 96 141-248 25-137 (261)
266 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.029 9.8E-07 48.2 3.1 22 142-163 24-45 (235)
267 1yrb_A ATP(GTP)binding protein 94.0 0.031 1.1E-06 49.3 3.4 25 139-163 12-36 (262)
268 3r20_A Cytidylate kinase; stru 94.0 0.028 9.7E-07 49.3 3.1 23 141-163 9-31 (233)
269 2dyk_A GTP-binding protein; GT 94.0 0.034 1.2E-06 44.6 3.3 23 142-164 2-24 (161)
270 1oix_A RAS-related protein RAB 94.0 0.03 1E-06 47.0 3.1 24 141-164 29-52 (191)
271 2xb4_A Adenylate kinase; ATP-b 94.0 0.028 9.5E-07 48.7 2.9 21 143-163 2-22 (223)
272 3a8t_A Adenylate isopentenyltr 93.9 0.037 1.3E-06 51.3 3.7 25 140-164 39-63 (339)
273 1e4v_A Adenylate kinase; trans 93.9 0.028 9.7E-07 48.2 2.8 21 143-163 2-22 (214)
274 3be4_A Adenylate kinase; malar 93.9 0.029 9.8E-07 48.3 2.8 22 142-163 6-27 (217)
275 1ltq_A Polynucleotide kinase; 93.9 0.031 1E-06 50.6 3.1 22 142-163 3-24 (301)
276 1fzq_A ADP-ribosylation factor 93.8 0.05 1.7E-06 45.1 4.1 26 139-164 14-39 (181)
277 2lkc_A Translation initiation 93.8 0.057 2E-06 44.1 4.4 26 139-164 6-31 (178)
278 3sr0_A Adenylate kinase; phosp 93.8 0.032 1.1E-06 48.0 2.9 21 143-163 2-22 (206)
279 1ak2_A Adenylate kinase isoenz 93.8 0.032 1.1E-06 48.6 3.0 23 141-163 16-38 (233)
280 2v9p_A Replication protein E1; 93.8 0.033 1.1E-06 50.9 3.1 24 140-163 125-148 (305)
281 3nh6_A ATP-binding cassette SU 93.7 0.028 9.6E-07 51.5 2.6 22 142-163 81-102 (306)
282 3end_A Light-independent proto 93.7 0.037 1.3E-06 50.3 3.4 26 138-163 38-63 (307)
283 3zvl_A Bifunctional polynucleo 93.7 0.035 1.2E-06 53.1 3.4 25 139-163 256-280 (416)
284 2pjz_A Hypothetical protein ST 93.7 0.034 1.2E-06 49.7 3.1 22 142-163 31-52 (263)
285 3crm_A TRNA delta(2)-isopenten 93.7 0.035 1.2E-06 51.2 3.1 22 142-163 6-27 (323)
286 1a7j_A Phosphoribulokinase; tr 93.7 0.019 6.6E-07 52.1 1.4 24 140-163 4-27 (290)
287 2wjg_A FEOB, ferrous iron tran 93.7 0.047 1.6E-06 45.2 3.7 24 141-164 7-30 (188)
288 2f9l_A RAB11B, member RAS onco 93.7 0.039 1.3E-06 46.5 3.2 24 141-164 5-28 (199)
289 2ce2_X GTPase HRAS; signaling 93.6 0.035 1.2E-06 44.5 2.8 22 143-164 5-26 (166)
290 3exa_A TRNA delta(2)-isopenten 93.6 0.037 1.3E-06 50.8 3.1 23 141-163 3-25 (322)
291 1nij_A Hypothetical protein YJ 93.6 0.037 1.3E-06 50.9 3.1 25 140-164 3-27 (318)
292 3sop_A Neuronal-specific septi 93.6 0.034 1.2E-06 49.9 2.8 21 143-163 4-24 (270)
293 1cr0_A DNA primase/helicase; R 93.5 0.037 1.3E-06 50.0 3.0 22 142-163 36-57 (296)
294 1nlf_A Regulatory protein REPA 93.5 0.037 1.3E-06 49.6 3.0 22 142-163 31-52 (279)
295 1z2a_A RAS-related protein RAB 93.4 0.04 1.4E-06 44.4 2.9 24 141-164 5-28 (168)
296 2j37_W Signal recognition part 93.4 0.068 2.3E-06 52.3 4.9 24 139-162 99-122 (504)
297 3vr4_A V-type sodium ATPase ca 93.4 0.099 3.4E-06 51.6 6.0 35 129-164 221-255 (600)
298 2bbs_A Cystic fibrosis transme 93.4 0.042 1.4E-06 49.9 3.1 22 142-163 65-86 (290)
299 1q3t_A Cytidylate kinase; nucl 93.4 0.044 1.5E-06 47.8 3.1 24 140-163 15-38 (236)
300 1z08_A RAS-related protein RAB 93.4 0.058 2E-06 43.6 3.7 24 141-164 6-29 (170)
301 2nzj_A GTP-binding protein REM 93.4 0.063 2.2E-06 43.6 4.0 25 141-165 4-28 (175)
302 2qtf_A Protein HFLX, GTP-bindi 93.4 0.11 3.7E-06 48.8 6.0 26 140-165 178-203 (364)
303 1ls1_A Signal recognition part 93.3 0.047 1.6E-06 49.6 3.4 24 140-163 97-120 (295)
304 3foz_A TRNA delta(2)-isopenten 93.3 0.05 1.7E-06 49.8 3.5 24 140-163 9-32 (316)
305 3qf4_A ABC transporter, ATP-bi 93.3 0.23 7.8E-06 49.6 8.6 22 142-163 370-391 (587)
306 3con_A GTPase NRAS; structural 93.3 0.044 1.5E-06 45.5 2.9 24 142-165 22-45 (190)
307 1u8z_A RAS-related protein RAL 93.3 0.045 1.5E-06 44.0 2.9 24 142-165 5-28 (168)
308 3thx_B DNA mismatch repair pro 93.3 0.26 8.8E-06 51.8 9.2 105 140-249 672-801 (918)
309 1j8m_F SRP54, signal recogniti 93.3 0.066 2.3E-06 48.7 4.3 23 141-163 98-120 (297)
310 3fvq_A Fe(3+) IONS import ATP- 93.3 0.043 1.5E-06 51.3 3.0 22 142-163 31-52 (359)
311 4eaq_A DTMP kinase, thymidylat 93.2 0.048 1.6E-06 47.6 3.1 25 140-164 25-49 (229)
312 2erx_A GTP-binding protein DI- 93.2 0.052 1.8E-06 43.9 3.1 22 143-164 5-26 (172)
313 3q72_A GTP-binding protein RAD 93.2 0.048 1.6E-06 44.0 2.9 22 143-164 4-25 (166)
314 3hws_A ATP-dependent CLP prote 93.1 0.066 2.3E-06 49.9 4.2 23 141-163 51-73 (363)
315 1svm_A Large T antigen; AAA+ f 93.1 0.09 3.1E-06 49.5 5.1 25 139-163 167-191 (377)
316 2dr3_A UPF0273 protein PH0284; 93.1 0.057 2E-06 46.9 3.4 38 142-181 24-61 (247)
317 3kta_A Chromosome segregation 93.0 0.053 1.8E-06 45.0 3.0 22 142-163 27-48 (182)
318 1z47_A CYSA, putative ABC-tran 93.0 0.05 1.7E-06 50.8 3.1 22 142-163 42-63 (355)
319 2ocp_A DGK, deoxyguanosine kin 93.0 0.053 1.8E-06 47.4 3.1 23 141-163 2-24 (241)
320 1c1y_A RAS-related protein RAP 93.0 0.061 2.1E-06 43.3 3.3 22 143-164 5-26 (167)
321 1ek0_A Protein (GTP-binding pr 93.0 0.052 1.8E-06 43.8 2.9 23 143-165 5-27 (170)
322 2p67_A LAO/AO transport system 93.0 0.1 3.4E-06 48.4 5.2 26 138-163 53-78 (341)
323 3tui_C Methionine import ATP-b 93.0 0.051 1.7E-06 51.0 3.1 22 142-163 55-76 (366)
324 1tq4_A IIGP1, interferon-induc 93.0 0.053 1.8E-06 51.7 3.3 24 140-163 68-91 (413)
325 3gqb_B V-type ATP synthase bet 93.0 0.043 1.5E-06 52.8 2.6 24 143-166 149-172 (464)
326 1z0j_A RAB-22, RAS-related pro 93.0 0.053 1.8E-06 43.8 2.9 24 142-165 7-30 (170)
327 1svi_A GTP-binding protein YSX 92.9 0.062 2.1E-06 44.7 3.4 25 140-164 22-46 (195)
328 2gj8_A MNME, tRNA modification 92.9 0.054 1.8E-06 44.6 2.9 23 142-164 5-27 (172)
329 2v3c_C SRP54, signal recogniti 92.9 0.037 1.3E-06 53.2 2.0 24 140-163 98-121 (432)
330 1lw7_A Transcriptional regulat 92.9 0.054 1.8E-06 50.7 3.2 23 141-163 170-192 (365)
331 2c61_A A-type ATP synthase non 92.9 0.055 1.9E-06 52.3 3.2 41 143-183 154-196 (469)
332 1kao_A RAP2A; GTP-binding prot 92.9 0.055 1.9E-06 43.4 2.9 22 143-164 5-26 (167)
333 1p5z_B DCK, deoxycytidine kina 92.9 0.044 1.5E-06 48.7 2.4 25 139-163 22-46 (263)
334 2yyz_A Sugar ABC transporter, 92.8 0.055 1.9E-06 50.6 3.1 22 142-163 30-51 (359)
335 1nrj_B SR-beta, signal recogni 92.8 0.06 2.1E-06 45.8 3.2 27 139-165 10-36 (218)
336 2qm8_A GTPase/ATPase; G protei 92.8 0.1 3.5E-06 48.4 4.9 26 138-163 52-77 (337)
337 3rlf_A Maltose/maltodextrin im 92.8 0.055 1.9E-06 51.0 3.1 22 142-163 30-51 (381)
338 3e1s_A Exodeoxyribonuclease V, 92.8 0.11 3.7E-06 51.8 5.4 105 125-240 192-312 (574)
339 2it1_A 362AA long hypothetical 92.8 0.056 1.9E-06 50.6 3.1 22 142-163 30-51 (362)
340 1ky3_A GTP-binding protein YPT 92.8 0.075 2.6E-06 43.4 3.6 26 140-165 7-32 (182)
341 3hjn_A DTMP kinase, thymidylat 92.8 0.19 6.5E-06 42.7 6.2 21 143-163 2-22 (197)
342 3pqc_A Probable GTP-binding pr 92.7 0.069 2.3E-06 44.2 3.3 25 141-165 23-47 (195)
343 3tw8_B RAS-related protein RAB 92.7 0.098 3.4E-06 42.6 4.3 27 139-165 7-33 (181)
344 3q85_A GTP-binding protein REM 92.7 0.081 2.8E-06 42.7 3.7 22 142-163 3-24 (169)
345 1g29_1 MALK, maltose transport 92.7 0.058 2E-06 50.7 3.1 22 142-163 30-51 (372)
346 1f6b_A SAR1; gtpases, N-termin 92.7 0.053 1.8E-06 45.7 2.6 23 142-164 26-48 (198)
347 1m7b_A RND3/RHOE small GTP-bin 92.7 0.057 2E-06 44.7 2.8 24 141-164 7-30 (184)
348 1h65_A Chloroplast outer envel 92.7 0.15 5.3E-06 45.3 5.8 36 130-165 28-63 (270)
349 1moz_A ARL1, ADP-ribosylation 92.7 0.099 3.4E-06 42.9 4.2 26 139-164 16-41 (183)
350 2cxx_A Probable GTP-binding pr 92.7 0.063 2.1E-06 44.3 3.0 23 143-165 3-25 (190)
351 1wms_A RAB-9, RAB9, RAS-relate 92.7 0.06 2.1E-06 43.9 2.9 24 141-164 7-30 (177)
352 3d31_A Sulfate/molybdate ABC t 92.7 0.05 1.7E-06 50.7 2.6 22 142-163 27-48 (348)
353 1pui_A ENGB, probable GTP-bind 92.7 0.046 1.6E-06 46.3 2.1 25 140-164 25-49 (210)
354 1v43_A Sugar-binding transport 92.6 0.06 2.1E-06 50.6 3.1 22 142-163 38-59 (372)
355 3t1o_A Gliding protein MGLA; G 92.6 0.056 1.9E-06 44.8 2.7 23 141-163 14-36 (198)
356 3ihw_A Centg3; RAS, centaurin, 92.6 0.061 2.1E-06 44.8 2.9 24 141-164 20-43 (184)
357 4dsu_A GTPase KRAS, isoform 2B 92.6 0.073 2.5E-06 43.8 3.3 24 142-165 5-28 (189)
358 2r62_A Cell division protease 92.6 0.026 9.1E-07 50.0 0.6 121 144-276 47-196 (268)
359 1r2q_A RAS-related protein RAB 92.6 0.063 2.2E-06 43.2 2.9 23 142-164 7-29 (170)
360 2fn4_A P23, RAS-related protei 92.6 0.1 3.5E-06 42.5 4.2 25 140-164 8-32 (181)
361 3kkq_A RAS-related protein M-R 92.6 0.074 2.5E-06 43.7 3.3 25 140-164 17-41 (183)
362 2hxs_A RAB-26, RAS-related pro 92.6 0.065 2.2E-06 43.7 3.0 24 141-164 6-29 (178)
363 1z0f_A RAB14, member RAS oncog 92.5 0.065 2.2E-06 43.7 2.9 26 140-165 14-39 (179)
364 1oxx_K GLCV, glucose, ABC tran 92.5 0.046 1.6E-06 51.1 2.1 22 142-163 32-53 (353)
365 1r8s_A ADP-ribosylation factor 92.5 0.063 2.2E-06 43.2 2.7 20 144-163 3-22 (164)
366 3c5c_A RAS-like protein 12; GD 92.5 0.066 2.2E-06 44.6 2.9 24 141-164 21-44 (187)
367 1cp2_A CP2, nitrogenase iron p 92.4 0.071 2.4E-06 47.2 3.2 22 142-163 2-23 (269)
368 3t5g_A GTP-binding protein RHE 92.4 0.077 2.6E-06 43.5 3.2 24 141-164 6-29 (181)
369 2www_A Methylmalonic aciduria 92.4 0.079 2.7E-06 49.3 3.6 24 140-163 73-96 (349)
370 2bme_A RAB4A, RAS-related prot 92.4 0.066 2.3E-06 44.1 2.8 25 141-165 10-34 (186)
371 4bas_A ADP-ribosylation factor 92.4 0.095 3.2E-06 43.6 3.8 27 139-165 15-41 (199)
372 3def_A T7I23.11 protein; chlor 92.4 0.18 6.1E-06 44.7 5.8 37 129-165 24-60 (262)
373 2qnr_A Septin-2, protein NEDD5 92.4 0.058 2E-06 49.1 2.6 20 144-163 21-40 (301)
374 2iwr_A Centaurin gamma 1; ANK 92.4 0.058 2E-06 44.2 2.4 23 142-164 8-30 (178)
375 1m2o_B GTP-binding protein SAR 92.4 0.067 2.3E-06 44.7 2.8 23 142-164 24-46 (190)
376 2qu8_A Putative nucleolar GTP- 92.3 0.1 3.4E-06 45.0 4.0 27 139-165 27-53 (228)
377 2a9k_A RAS-related protein RAL 92.3 0.071 2.4E-06 43.8 2.9 25 141-165 18-42 (187)
378 3eph_A TRNA isopentenyltransfe 92.3 0.069 2.4E-06 50.7 3.0 22 142-163 3-24 (409)
379 2y8e_A RAB-protein 6, GH09086P 92.3 0.097 3.3E-06 42.6 3.7 23 142-164 15-37 (179)
380 3bc1_A RAS-related protein RAB 92.3 0.099 3.4E-06 43.1 3.7 24 141-164 11-34 (195)
381 4gzl_A RAS-related C3 botulinu 92.3 0.1 3.6E-06 44.0 3.9 24 141-164 30-53 (204)
382 1g16_A RAS-related protein SEC 92.3 0.093 3.2E-06 42.3 3.5 23 142-164 4-26 (170)
383 3tkl_A RAS-related protein RAB 92.3 0.097 3.3E-06 43.5 3.7 26 140-165 15-40 (196)
384 2afh_E Nitrogenase iron protei 92.2 0.08 2.7E-06 47.6 3.3 23 141-163 2-24 (289)
385 1mh1_A RAC1; GTP-binding, GTPa 92.2 0.074 2.5E-06 43.7 2.9 23 142-164 6-28 (186)
386 3cbq_A GTP-binding protein REM 92.2 0.088 3E-06 44.3 3.4 23 140-162 22-44 (195)
387 2oil_A CATX-8, RAS-related pro 92.2 0.074 2.5E-06 44.2 2.9 25 141-165 25-49 (193)
388 1upt_A ARL1, ADP-ribosylation 92.2 0.099 3.4E-06 42.2 3.6 24 141-164 7-30 (171)
389 1ksh_A ARF-like protein 2; sma 92.2 0.084 2.9E-06 43.6 3.2 26 140-165 17-42 (186)
390 3bwd_D RAC-like GTP-binding pr 92.2 0.076 2.6E-06 43.5 2.9 23 142-164 9-31 (182)
391 2efe_B Small GTP-binding prote 92.2 0.1 3.5E-06 42.6 3.6 24 141-164 12-35 (181)
392 3gd7_A Fusion complex of cysti 92.2 0.073 2.5E-06 50.4 3.0 22 142-163 48-69 (390)
393 3llu_A RAS-related GTP-binding 92.1 0.078 2.7E-06 44.5 2.9 23 141-163 20-42 (196)
394 2gza_A Type IV secretion syste 92.1 0.064 2.2E-06 50.2 2.6 22 142-163 176-197 (361)
395 1zj6_A ADP-ribosylation factor 92.1 0.19 6.4E-06 41.5 5.3 25 140-164 15-39 (187)
396 2qmh_A HPR kinase/phosphorylas 92.1 0.087 3E-06 45.0 3.1 22 142-163 35-56 (205)
397 2bov_A RAla, RAS-related prote 92.1 0.11 3.8E-06 43.4 3.9 26 140-165 13-38 (206)
398 1zbd_A Rabphilin-3A; G protein 92.1 0.086 2.9E-06 44.2 3.2 25 141-165 8-32 (203)
399 2obl_A ESCN; ATPase, hydrolase 92.1 0.07 2.4E-06 49.7 2.8 34 129-163 60-93 (347)
400 1vg8_A RAS-related protein RAB 92.1 0.077 2.6E-06 44.6 2.9 26 140-165 7-32 (207)
401 2g6b_A RAS-related protein RAB 92.0 0.081 2.8E-06 43.2 2.9 25 141-165 10-34 (180)
402 2atv_A RERG, RAS-like estrogen 92.0 0.082 2.8E-06 44.2 2.9 24 141-164 28-51 (196)
403 2b6h_A ADP-ribosylation factor 91.9 0.087 3E-06 44.1 3.0 25 140-164 28-52 (192)
404 3gqb_A V-type ATP synthase alp 91.9 0.12 4.2E-06 50.7 4.3 22 142-163 222-243 (578)
405 2h92_A Cytidylate kinase; ross 91.9 0.072 2.5E-06 45.6 2.5 22 142-163 4-25 (219)
406 2fg5_A RAB-22B, RAS-related pr 91.9 0.081 2.8E-06 44.1 2.7 25 141-165 23-47 (192)
407 2fh5_B SR-beta, signal recogni 91.8 0.097 3.3E-06 44.4 3.2 25 141-165 7-31 (214)
408 2q3h_A RAS homolog gene family 91.8 0.09 3.1E-06 44.0 3.0 25 141-165 20-44 (201)
409 1zd9_A ADP-ribosylation factor 91.8 0.12 4.1E-06 42.9 3.7 26 140-165 21-46 (188)
410 3lxx_A GTPase IMAP family memb 91.8 0.12 4.2E-06 44.9 3.9 27 139-165 27-53 (239)
411 2il1_A RAB12; G-protein, GDP, 91.8 0.089 3.1E-06 43.9 2.9 25 141-165 26-50 (192)
412 2ffh_A Protein (FFH); SRP54, s 91.8 0.098 3.4E-06 50.1 3.4 24 140-163 97-120 (425)
413 3clv_A RAB5 protein, putative; 91.8 0.088 3E-06 43.7 2.9 25 141-165 7-31 (208)
414 2axn_A 6-phosphofructo-2-kinas 91.7 0.099 3.4E-06 51.5 3.6 25 139-163 33-57 (520)
415 2gf9_A RAS-related protein RAB 91.7 0.091 3.1E-06 43.6 2.9 25 141-165 22-46 (189)
416 3oes_A GTPase rhebl1; small GT 91.7 0.087 3E-06 44.3 2.8 26 140-165 23-48 (201)
417 1ega_A Protein (GTP-binding pr 91.7 0.1 3.6E-06 47.4 3.5 25 140-164 7-31 (301)
418 2o52_A RAS-related protein RAB 91.7 0.091 3.1E-06 44.2 2.9 25 140-164 24-48 (200)
419 1gwn_A RHO-related GTP-binding 91.7 0.087 3E-06 44.7 2.8 25 140-164 27-51 (205)
420 3reg_A RHO-like small GTPase; 91.7 0.12 4.2E-06 42.9 3.7 25 141-165 23-47 (194)
421 2a5j_A RAS-related protein RAB 91.7 0.093 3.2E-06 43.7 2.9 25 141-165 21-45 (191)
422 3iev_A GTP-binding protein ERA 91.6 0.13 4.3E-06 47.0 3.9 27 138-164 7-33 (308)
423 2cjw_A GTP-binding protein GEM 91.6 0.095 3.3E-06 43.9 2.9 23 141-163 6-28 (192)
424 1x3s_A RAS-related protein RAB 91.5 0.098 3.3E-06 43.3 2.9 24 142-165 16-39 (195)
425 1z06_A RAS-related protein RAB 91.5 0.097 3.3E-06 43.4 2.9 25 140-164 19-43 (189)
426 3cr8_A Sulfate adenylyltranfer 91.5 0.081 2.8E-06 52.4 2.7 23 141-163 369-391 (552)
427 2p5s_A RAS and EF-hand domain 91.5 0.097 3.3E-06 43.9 2.9 25 140-164 27-51 (199)
428 2ew1_A RAS-related protein RAB 91.5 0.094 3.2E-06 44.4 2.8 25 140-164 25-49 (201)
429 2h57_A ADP-ribosylation factor 91.5 0.091 3.1E-06 43.6 2.6 25 141-165 21-45 (190)
430 2j1l_A RHO-related GTP-binding 91.4 0.1 3.4E-06 44.5 2.9 24 141-164 34-57 (214)
431 2h17_A ADP-ribosylation factor 91.4 0.099 3.4E-06 43.1 2.8 24 141-164 21-44 (181)
432 2gf0_A GTP-binding protein DI- 91.4 0.098 3.4E-06 43.5 2.8 24 141-164 8-31 (199)
433 2npi_A Protein CLP1; CLP1-PCF1 91.4 0.076 2.6E-06 51.4 2.2 22 142-163 139-160 (460)
434 3gmt_A Adenylate kinase; ssgci 91.4 0.095 3.2E-06 45.8 2.6 21 143-163 10-30 (230)
435 3bh0_A DNAB-like replicative h 91.4 0.12 4E-06 47.3 3.5 37 142-180 69-105 (315)
436 2bcg_Y Protein YP2, GTP-bindin 91.4 0.099 3.4E-06 44.0 2.8 25 141-165 8-32 (206)
437 3dz8_A RAS-related protein RAB 91.4 0.094 3.2E-06 43.6 2.6 23 142-164 24-46 (191)
438 4hlc_A DTMP kinase, thymidylat 91.3 0.15 5.2E-06 43.6 3.9 22 142-163 3-24 (205)
439 2qag_B Septin-6, protein NEDD5 91.3 0.092 3.2E-06 50.2 2.8 25 140-164 41-65 (427)
440 3ch4_B Pmkase, phosphomevalona 91.3 0.14 4.8E-06 43.8 3.6 25 139-163 9-33 (202)
441 1u0j_A DNA replication protein 91.3 0.19 6.4E-06 44.9 4.6 36 128-163 91-126 (267)
442 3ozx_A RNAse L inhibitor; ATP 91.3 0.1 3.5E-06 51.5 3.1 22 142-163 295-316 (538)
443 4akg_A Glutathione S-transfera 91.2 0.35 1.2E-05 56.3 7.8 86 141-231 1609-1695(2695)
444 3cph_A RAS-related protein SEC 91.2 0.15 5E-06 43.0 3.7 24 141-164 20-43 (213)
445 3k53_A Ferrous iron transport 91.2 0.13 4.4E-06 45.8 3.5 24 141-164 3-26 (271)
446 2fv8_A H6, RHO-related GTP-bin 91.2 0.1 3.6E-06 44.1 2.8 25 141-165 25-49 (207)
447 4dhe_A Probable GTP-binding pr 91.2 0.094 3.2E-06 44.7 2.5 26 140-165 28-53 (223)
448 2o8b_B DNA mismatch repair pro 91.2 0.49 1.7E-05 50.3 8.4 105 141-249 789-917 (1022)
449 2x77_A ADP-ribosylation factor 91.1 0.21 7.1E-06 41.3 4.5 26 139-164 20-45 (189)
450 1yqt_A RNAse L inhibitor; ATP- 91.0 0.11 3.8E-06 51.3 3.1 23 142-164 313-335 (538)
451 2aka_B Dynamin-1; fusion prote 91.0 0.23 7.7E-06 44.5 5.0 27 139-165 24-50 (299)
452 2dpy_A FLII, flagellum-specifi 91.0 0.11 3.6E-06 50.1 2.8 33 130-163 147-179 (438)
453 2g3y_A GTP-binding protein GEM 90.9 0.12 4.2E-06 44.3 3.0 24 140-163 36-59 (211)
454 2f7s_A C25KG, RAS-related prot 90.9 0.13 4.6E-06 43.6 3.2 24 141-164 25-48 (217)
455 2fu5_C RAS-related protein RAB 90.9 0.074 2.5E-06 43.7 1.5 24 141-164 8-31 (183)
456 2gco_A H9, RHO-related GTP-bin 90.9 0.12 4E-06 43.5 2.8 25 141-165 25-49 (201)
457 1bif_A 6-phosphofructo-2-kinas 90.9 0.12 4.2E-06 50.0 3.2 24 140-163 38-61 (469)
458 2hup_A RAS-related protein RAB 90.9 0.12 4E-06 43.6 2.8 25 140-164 28-52 (201)
459 2j0v_A RAC-like GTP-binding pr 90.9 0.12 4.1E-06 43.7 2.8 24 141-164 9-32 (212)
460 4edh_A DTMP kinase, thymidylat 90.9 0.13 4.6E-06 44.2 3.1 22 142-163 7-28 (213)
461 2atx_A Small GTP binding prote 90.9 0.12 4E-06 43.0 2.7 24 141-164 18-41 (194)
462 3ozx_A RNAse L inhibitor; ATP 90.8 0.13 4.4E-06 50.8 3.3 23 141-163 25-47 (538)
463 3q3j_B RHO-related GTP-binding 90.8 0.17 5.7E-06 43.2 3.7 24 142-165 28-51 (214)
464 2yv5_A YJEQ protein; hydrolase 90.8 0.13 4.4E-06 46.9 3.1 34 124-162 153-186 (302)
465 4f4c_A Multidrug resistance pr 90.8 1 3.4E-05 49.4 10.6 95 143-242 1107-1274(1321)
466 2qag_C Septin-7; cell cycle, c 90.8 0.12 4.1E-06 49.4 3.0 21 144-164 34-54 (418)
467 3ld9_A DTMP kinase, thymidylat 90.8 0.15 5.2E-06 44.3 3.4 26 139-164 19-44 (223)
468 3b1v_A Ferrous iron uptake tra 90.8 0.21 7.1E-06 44.7 4.4 24 141-164 3-26 (272)
469 2rcn_A Probable GTPase ENGC; Y 90.7 0.13 4.5E-06 48.0 3.1 34 126-164 205-238 (358)
470 1yqt_A RNAse L inhibitor; ATP- 90.7 0.13 4.3E-06 50.9 3.1 22 142-163 48-69 (538)
471 1p9r_A General secretion pathw 90.7 0.13 4.5E-06 49.1 3.1 24 140-163 166-189 (418)
472 3euj_A Chromosome partition pr 90.6 0.13 4.5E-06 50.0 3.1 22 142-163 30-51 (483)
473 2xtp_A GTPase IMAP family memb 90.6 0.17 5.9E-06 44.5 3.7 26 140-165 21-46 (260)
474 1f2t_A RAD50 ABC-ATPase; DNA d 90.6 0.17 5.9E-06 40.8 3.4 22 141-162 23-44 (149)
475 3bk7_A ABC transporter ATP-bin 90.5 0.13 4.6E-06 51.5 3.1 23 142-164 383-405 (607)
476 4dzz_A Plasmid partitioning pr 90.5 0.14 4.9E-06 43.0 2.9 22 142-163 2-24 (206)
477 3ea0_A ATPase, para family; al 90.5 0.16 5.6E-06 44.0 3.4 24 140-163 3-27 (245)
478 4dkx_A RAS-related protein RAB 90.4 0.14 4.8E-06 44.1 2.9 22 143-164 15-36 (216)
479 3j16_B RLI1P; ribosome recycli 90.4 0.14 4.7E-06 51.4 3.1 22 142-163 379-400 (608)
480 3fdi_A Uncharacterized protein 90.3 0.14 4.9E-06 43.5 2.8 22 142-163 7-28 (201)
481 3vkg_A Dynein heavy chain, cyt 90.3 0.41 1.4E-05 56.4 7.2 84 143-231 1648-1732(3245)
482 3k9g_A PF-32 protein; ssgcid, 90.2 0.15 5.2E-06 45.0 3.0 25 139-163 25-50 (267)
483 3v9p_A DTMP kinase, thymidylat 90.2 0.12 4E-06 45.1 2.1 23 142-164 26-48 (227)
484 1wf3_A GTP-binding protein; GT 90.2 0.19 6.6E-06 45.6 3.7 24 141-164 7-30 (301)
485 1u0l_A Probable GTPase ENGC; p 90.1 0.16 5.5E-06 46.1 3.1 36 124-164 157-192 (301)
486 3b60_A Lipid A export ATP-bind 90.1 0.15 5.1E-06 50.9 3.1 22 142-163 370-391 (582)
487 3gee_A MNME, tRNA modification 90.0 1 3.6E-05 43.6 9.0 22 143-164 235-256 (476)
488 3j16_B RLI1P; ribosome recycli 90.0 0.15 5.3E-06 51.1 3.1 22 142-163 104-125 (608)
489 3lv8_A DTMP kinase, thymidylat 90.0 0.16 5.4E-06 44.6 2.8 24 141-164 27-50 (236)
490 3iby_A Ferrous iron transport 89.9 0.16 5.4E-06 45.0 2.8 23 142-164 2-24 (256)
491 3bk7_A ABC transporter ATP-bin 89.9 0.16 5.5E-06 50.9 3.1 22 142-163 118-139 (607)
492 3t5d_A Septin-7; GTP-binding p 89.9 0.16 5.4E-06 45.3 2.8 23 142-164 9-31 (274)
493 3b5x_A Lipid A export ATP-bind 89.8 0.16 5.4E-06 50.7 3.1 22 142-163 370-391 (582)
494 2zts_A Putative uncharacterize 89.8 0.17 5.9E-06 43.8 2.9 22 142-163 31-52 (251)
495 3cpj_B GTP-binding protein YPT 89.8 0.17 5.8E-06 43.3 2.8 24 141-164 13-36 (223)
496 4akg_A Glutathione S-transfera 89.7 0.54 1.8E-05 54.8 7.6 78 129-213 1258-1346(2695)
497 1m8p_A Sulfate adenylyltransfe 89.7 0.2 6.9E-06 49.8 3.7 24 140-163 395-418 (573)
498 3lxw_A GTPase IMAP family memb 89.7 0.19 6.6E-06 44.1 3.2 26 140-165 20-45 (247)
499 3kjh_A CO dehydrogenase/acetyl 89.7 0.15 5.2E-06 44.2 2.5 20 144-163 3-22 (254)
500 1zcb_A G alpha I/13; GTP-bindi 89.7 0.21 7.2E-06 46.7 3.6 22 140-161 32-53 (362)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.8e-39 Score=325.05 Aligned_cols=217 Identities=14% Similarity=0.141 Sum_probs=178.4
Q ss_pred chhHHHHHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHhc--CccccCCCCceEEEEeCCCC--CHHHHHHH------
Q 036086 123 LESSVDSVKNALLRD-GNTVRFIHIVGVSGTDETAIAHRVFT--DDDVKSRLPFKVWYSVGKNL--DFSTAVQE------ 191 (355)
Q Consensus 123 ~~~~~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~i~~~------ 191 (355)
.+.++++|.++|... +...++|+|+||||+||||||+++|+ |.+++.+|++++||++++.+ +...+++.
T Consensus 133 R~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~ 212 (549)
T 2a5y_B 133 REYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLK 212 (549)
T ss_dssp CHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHh
Confidence 389999999999765 45689999999999999999999998 78999999999999999985 66666651
Q ss_pred ------------------HHHHHhhcCCCC-cEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhccc
Q 036086 192 ------------------IRNRRNEIPSSK-RLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQ 252 (355)
Q Consensus 192 ------------------l~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~ 252 (355)
+...+++.|+++ |||||||||| +.+.+ . ++. . +||+||||||++.++.. ++
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~--~~~~~-~----~~~-~-~gs~ilvTTR~~~v~~~-~~ 282 (549)
T 2a5y_B 213 SEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV--QEETI-R----WAQ-E-LRLRCLVTTRDVEISNA-AS 282 (549)
T ss_dssp TTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC--CHHHH-H----HHH-H-TTCEEEEEESBGGGGGG-CC
T ss_pred cCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCC--Cchhh-c----ccc-c-CCCEEEEEcCCHHHHHH-cC
Confidence 356778888896 9999999999 65544 1 221 1 58999999999999998 76
Q ss_pred CCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHHHHHHhhcccccC-------------CCc
Q 036086 253 TVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLTQFLLDIDPVATG-------------ESL 319 (355)
Q Consensus 253 ~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~~~~~~~~~~~~~-------------~~~ 319 (355)
....+|+|++|++++||+||.+.+|+.. .++.+++++.+|+++|+|+|||++.++..+....| ...
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~ 361 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP-VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLV 361 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHH
Confidence 4426799999999999999999998763 25788899999999999999999999876554432 123
Q ss_pred CccchHHhhhcCCCcccccccc-----------c--cccCcccc
Q 036086 320 ETVPTSDRTERRLPIHDIDCEA-----------G--PFQNKDKV 350 (355)
Q Consensus 320 ~~~~~l~~sY~~Lp~~lk~CF~-----------~--~~~~~~~~ 350 (355)
.+.+.+.+||++||+++|.||+ | +||.+..+
T Consensus 362 ~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i 405 (549)
T 2a5y_B 362 GVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDI 405 (549)
T ss_dssp TTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCE
T ss_pred HHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCee
Confidence 4567788999999999999988 6 78876654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=2.9e-32 Score=282.85 Aligned_cols=206 Identities=14% Similarity=0.128 Sum_probs=161.0
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCc-eEEEEeCCCCCHHHHHHHH----------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPF-KVWYSVGKNLDFSTAVQEI---------- 192 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~l---------- 192 (355)
+.+.++|.++|... +..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..+
T Consensus 134 e~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~ 212 (1221)
T 1vt4_I 134 LQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212 (1221)
T ss_dssp HHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcc
Confidence 88999999999863 34789999999999999999999998889999987 8899999999876665422
Q ss_pred ------------------HHHHhhcC---CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhcc
Q 036086 193 ------------------RNRRNEIP---SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMM 251 (355)
Q Consensus 193 ------------------~~~l~~~l---~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~ 251 (355)
...+++.| .++|+|||||||| +...|+.+ + +||+||||||++.++.. +
T Consensus 213 ~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVw--d~eqLe~f----~----pGSRILVTTRd~~Va~~-l 281 (1221)
T 1vt4_I 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAF----N----LSCKILLTTRFKQVTDF-L 281 (1221)
T ss_dssp STTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCC--CHHHHHHH----H----SSCCEEEECSCSHHHHH-H
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcC--hHHHHHhh----C----CCeEEEEeccChHHHHh-c
Confidence 22344433 6899999999999 77777654 2 58999999999999976 5
Q ss_pred cCCcccccCC------CCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHHHHHHhhccccc--CCC-----
Q 036086 252 QTVPEAEHLI------YFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLTQFLLDIDPVAT--GES----- 318 (355)
Q Consensus 252 ~~~~~~~~l~------~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~~~~~~~~~~~~--~~~----- 318 (355)
+.. ..|.++ +|+++|||+||++. ++... .++..++ |+|+|||++.++..+.... ++.
T Consensus 282 ~g~-~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~~-----eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~ 351 (1221)
T 1vt4_I 282 SAA-TTTHISLDHHSMTLTPDEVKSLLLKY-LDCRP-----QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVN 351 (1221)
T ss_dssp HHH-SSCEEEECSSSSCCCHHHHHHHHHHH-HCCCT-----TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCS
T ss_pred CCC-eEEEecCccccCCcCHHHHHHHHHHH-cCCCH-----HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCC
Confidence 443 467777 99999999999998 43321 1233333 9999999999987766542 122
Q ss_pred -cCccchHHhhhcCCCccc-cccccc--cccCcccch
Q 036086 319 -LETVPTSDRTERRLPIHD-IDCEAG--PFQNKDKVR 351 (355)
Q Consensus 319 -~~~~~~l~~sY~~Lp~~l-k~CF~~--~~~~~~~~~ 351 (355)
..+...|.+||+.||+++ |.||+| +||++..+.
T Consensus 352 ~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~ 388 (1221)
T 1vt4_I 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388 (1221)
T ss_dssp CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEE
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCC
Confidence 235577889999999999 999987 788876653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1e-30 Score=284.29 Aligned_cols=214 Identities=16% Similarity=0.146 Sum_probs=167.1
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc-cCCC-CceEEEEeCCCCCHHHH--HH---------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV-KSRL-PFKVWYSVGKNLDFSTA--VQ--------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~i--~~--------- 190 (355)
+.+.++|.++|...++..++|+|+||||+||||||+++|++.+. ..+| +..+||++++..+...+ +.
T Consensus 130 ~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~ 209 (1249)
T 3sfz_A 130 KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209 (1249)
T ss_dssp HHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhh
Confidence 89999999999876677899999999999999999999997643 5566 55669999986542221 11
Q ss_pred ------------HHHHHHhhcCCCC--cEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhcccCCcc
Q 036086 191 ------------EIRNRRNEIPSSK--RLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQTVPE 256 (355)
Q Consensus 191 ------------~l~~~l~~~l~~k--r~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~~~~ 256 (355)
.+...++..+.++ |||||||||| +...|..+ . +||+||||||++.++..+++.. +
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~--~~~~~~~~-------~-~~~~ilvTtR~~~~~~~~~~~~-~ 278 (1249)
T 3sfz_A 210 ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKAF-------D-NQCQILLTTRDKSVTDSVMGPK-H 278 (1249)
T ss_dssp CTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC--CHHHHTTT-------C-SSCEEEEEESSTTTTTTCCSCB-C
T ss_pred cccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC--CHHHHHhh-------c-CCCEEEEEcCCHHHHHhhcCCc-e
Confidence 5667778888777 9999999999 66665443 4 7999999999999996524455 7
Q ss_pred cccCCC-CChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHHHHHHhhcccccC-----------CC------
Q 036086 257 AEHLIY-FSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLTQFLLDIDPVATG-----------ES------ 318 (355)
Q Consensus 257 ~~~l~~-L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~~~~~~~~~~~~~-----------~~------ 318 (355)
.+++.+ |+++++|+||...++.. .+.+++++.+|+++|+|+|||++.++.++..... ..
T Consensus 279 ~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 355 (1249)
T 3sfz_A 279 VVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRK 355 (1249)
T ss_dssp CEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSC
T ss_pred EEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhccc
Confidence 899996 99999999999988543 2344567899999999999999988866653221 00
Q ss_pred ------cCccchHHhhhcCCCccccccccc--cccCcccch
Q 036086 319 ------LETVPTSDRTERRLPIHDIDCEAG--PFQNKDKVR 351 (355)
Q Consensus 319 ------~~~~~~l~~sY~~Lp~~lk~CF~~--~~~~~~~~~ 351 (355)
..+...+.+||+.||+++|.||+| +||.+..+.
T Consensus 356 ~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~ 396 (1249)
T 3sfz_A 356 SSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVP 396 (1249)
T ss_dssp TTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEE
T ss_pred ccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeC
Confidence 113456888999999999999987 688876554
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=5.6e-28 Score=244.62 Aligned_cols=210 Identities=17% Similarity=0.145 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc-cCCC-CceEEEEeCCCCCHHHHHH-----------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV-KSRL-PFKVWYSVGKNLDFSTAVQ----------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~i~~----------- 190 (355)
+.+.++|.++|....+..++|+|+||||+||||||..+|++..+ ..+| +.++|++++.. +...++.
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~ 208 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQ 208 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhcc
Confidence 88999999998865556889999999999999999999997666 7889 57899999875 3322222
Q ss_pred -------------HHHHHHhhcCCC--CcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhcccCCc
Q 036086 191 -------------EIRNRRNEIPSS--KRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQTVP 255 (355)
Q Consensus 191 -------------~l~~~l~~~l~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~~~~ 255 (355)
.+...+.+.+.+ +++|||||||| +...+. .+ . +||+||||||+..++.. ++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~--~~~~l~----~l---~-~~~~ilvTsR~~~~~~~-~~~-- 275 (591)
T 1z6t_A 209 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW--DSWVLK----AF---D-SQCQILLTTRDKSVTDS-VMG-- 275 (591)
T ss_dssp SCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC--CHHHHH----TT---C-SSCEEEEEESCGGGGTT-CCS--
T ss_pred ccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC--CHHHHH----Hh---c-CCCeEEEECCCcHHHHh-cCC--
Confidence 223344444544 78999999999 554433 33 3 68999999999999876 543
Q ss_pred ccccC---CCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHHHHHHhhcccccC----------------
Q 036086 256 EAEHL---IYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLTQFLLDIDPVATG---------------- 316 (355)
Q Consensus 256 ~~~~l---~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~~~~~~~~~~~~~---------------- 316 (355)
..+.+ ++|+.+++++||...++.. .......+.+|+++|+|+|+|++.++..+.....
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~ 352 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKR 352 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCC
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHH
Confidence 23443 6899999999999988642 2233457889999999999999888755443221
Q ss_pred -------CCcCccchHHhhhcCCCccccccccc--cccCcccc
Q 036086 317 -------ESLETVPTSDRTERRLPIHDIDCEAG--PFQNKDKV 350 (355)
Q Consensus 317 -------~~~~~~~~l~~sY~~Lp~~lk~CF~~--~~~~~~~~ 350 (355)
....+...+..||+.||++.|.||++ +||.+..+
T Consensus 353 ~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i 395 (591)
T 1z6t_A 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKV 395 (591)
T ss_dssp SSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCE
T ss_pred hhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCcc
Confidence 00123456788999999999999986 78876554
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.51 E-value=4.5e-14 Score=111.82 Aligned_cols=72 Identities=14% Similarity=0.215 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhH-HHHhhc--h--hhHHHHHHHHHHHHHHHHHHHhc--ccCChH----HHHHHHHHhhhHhHHHHH-H
Q 036086 7 ELLDLVCGRLDSQ-AGAFWN--N--GEMKRLRLNLRDLHNLLRKAKQD--AILNPL----LTDLNDLASDVDGLIDAR-M 74 (355)
Q Consensus 7 a~v~~l~~kl~s~-~~e~~~--g--~~~~~L~~~L~~i~~~l~~a~~~--~~~~~~----l~~lr~~ayd~eD~lD~~-~ 74 (355)
|+|+.+++||+++ .+|+.+ | ++++.|+++|++|++||.+|+.+ +..++. +++||+++||+||+||+| +
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999 999988 5 99999999999999999999987 445655 999999999999999999 7
Q ss_pred HHHH
Q 036086 75 EVSK 78 (355)
Q Consensus 75 ~~~~ 78 (355)
+...
T Consensus 81 ~~~~ 84 (115)
T 3qfl_A 81 QVDG 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7643
No 6
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.24 E-value=6.9e-11 Score=104.13 Aligned_cols=178 Identities=12% Similarity=0.081 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCC-------------------CCceEEEEeCCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSR-------------------LPFKVWYSVGKNLD 184 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~vs~~~~ 184 (355)
+...+.+..++... ...+.+.|+|++|+||||||+.+++....... +.....+..+.. .
T Consensus 29 ~~~~~~l~~~l~~~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 106 (250)
T 1njg_A 29 EHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR-T 106 (250)
T ss_dssp HHHHHHHHHHHHHT-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCG-G
T ss_pred HHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCccc-c
Confidence 66777788777653 22347889999999999999999863321111 111122222211 1
Q ss_pred HHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChh-HhhhcccCCcccccCCC
Q 036086 185 FSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIY 262 (355)
Q Consensus 185 ~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~ 262 (355)
....+..+...+... ..+++.+||+||++..+...++.+...+.... .+..+|+||+... +...+.... ..+++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~-~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~ 184 (250)
T 1njg_A 107 KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTILSRC-LQFHLKA 184 (250)
T ss_dssp GHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCC-TTEEEEEEESCGGGSCHHHHTTS-EEEECCC
T ss_pred cHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCC-CceEEEEEeCChHhCCHHHHHHh-hhccCCC
Confidence 111111222222111 34578999999997656778888877776655 6788888887643 222102222 5789999
Q ss_pred CChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHHHHH
Q 036086 263 FSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLTQFL 307 (355)
Q Consensus 263 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~~~~ 307 (355)
++.++.++++.+.+...... --.+....++..|+|.|..+..+
T Consensus 185 l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~ 227 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSL 227 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999998765322111 11345677889999999777444
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.16 E-value=4.9e-11 Score=114.48 Aligned_cols=178 Identities=12% Similarity=0.048 Sum_probs=105.2
Q ss_pred hhHHHHHHHHH-hcC--C--CCeEEEEE--EcCCCccHHHHHHHHhcCcccc---CCCC-ceEEEEeCCCCCHHHHHHHH
Q 036086 124 ESSVDSVKNAL-LRD--G--NTVRFIHI--VGVSGTDETAIAHRVFTDDDVK---SRLP-FKVWYSVGKNLDFSTAVQEI 192 (355)
Q Consensus 124 ~~~~~~l~~~L-~~~--~--~~~~vi~I--vG~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~~i~~~l 192 (355)
+.+.++|.++| ... . .....+.| +|++|+||||||+.+++..... ..|+ ..+|+......+...++..+
T Consensus 28 ~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 107 (412)
T 1w5s_A 28 RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLI 107 (412)
T ss_dssp CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHH
Confidence 78888888887 421 2 23455556 9999999999999999743211 1233 24577765555555554421
Q ss_pred ------------------HHHHhhcCC--CCcEEEEEeCCCCC------ChhhHHHHHHhhccCC--C--CCcEEEEecC
Q 036086 193 ------------------RNRRNEIPS--SKRLLFALDDVSHL------NDDNLANLRLLVSDMR--L--VGFYVLVTTH 242 (355)
Q Consensus 193 ------------------~~~l~~~l~--~kr~LlVlDdvw~~------~~~~~~~l~~~l~~~~--~--~gs~IlvTTR 242 (355)
...+.+.+. +++++|||||+|.- +...+..+...+.... + ....||+||+
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~ 187 (412)
T 1w5s_A 108 VRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVAS 187 (412)
T ss_dssp HHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEE
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEec
Confidence 223333332 67999999999841 1244444433332211 0 1334777887
Q ss_pred ChhHhhhc-------ccCCcccccCCCCChhhHHHHhhhh---CCCCCCCcchHHHHHHHHHHhcC------CCchHH
Q 036086 243 STSVATMM-------MQTVPEAEHLIYFSESNSWSNLNCE---LPPSSQEAHRVEDLETGSAMDEE------GVTSLT 304 (355)
Q Consensus 243 ~~~va~~~-------~~~~~~~~~l~~L~~~~s~~Lf~~~---af~~~~~~~~~~~~~~~i~~~c~------GlPla~ 304 (355)
...+...+ .......+++.+|+.++.+++|.+. ++.... --.+....++..|+ |.|..+
T Consensus 188 ~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~G~p~~~ 262 (412)
T 1w5s_A 188 DVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV---WEPRHLELISDVYGEDKGGDGSARRA 262 (412)
T ss_dssp ETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS---CCHHHHHHHHHHHCGGGTSCCCHHHH
T ss_pred cccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC---CChHHHHHHHHHHHHhccCCCcHHHH
Confidence 65543220 1111123899999999999999754 333211 12356667888888 999544
No 8
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.10 E-value=5.7e-10 Score=104.33 Aligned_cols=171 Identities=10% Similarity=0.123 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC------CHHHHHHH------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL------DFSTAVQE------ 191 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~i~~~------ 191 (355)
+.+.+.|.+++... +++.|+|++|+|||||++.+.+.. + .+|+.+.... +...++..
T Consensus 18 ~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 86 (350)
T 2qen_A 18 EEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKELQSTIS 86 (350)
T ss_dssp HHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHHHHHHH
Confidence 77888888887642 689999999999999999998742 1 5666654321 22222221
Q ss_pred -----------------------------HHHHHhhcCC-CCcEEEEEeCCCCCC-------hhhHHHHHHhhccCCCCC
Q 036086 192 -----------------------------IRNRRNEIPS-SKRLLFALDDVSHLN-------DDNLANLRLLVSDMRLVG 234 (355)
Q Consensus 192 -----------------------------l~~~l~~~l~-~kr~LlVlDdvw~~~-------~~~~~~l~~~l~~~~~~g 234 (355)
+...+.+... .++++|||||++... ...+..+...... . .+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~-~~ 164 (350)
T 2qen_A 87 PFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-L-PN 164 (350)
T ss_dssp SHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-C-TT
T ss_pred HHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-c-CC
Confidence 1122222222 138999999998421 2233444333332 2 46
Q ss_pred cEEEEecCChhHhhhc----------ccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 235 FYVLVTTHSTSVATMM----------MQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 235 s~IlvTTR~~~va~~~----------~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
.++|+|++.......+ .+.....+++.||+.+++.+++.... ...... .-......+...|+|.|.++
T Consensus 165 ~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~-~~~~~~-~~~~~~~~i~~~tgG~P~~l 242 (350)
T 2qen_A 165 LKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF-REVNLD-VPENEIEEAVELLDGIPGWL 242 (350)
T ss_dssp EEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH-HTTTCC-CCHHHHHHHHHHHTTCHHHH
T ss_pred eEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH-HHcCCC-CCHHHHHHHHHHhCCCHHHH
Confidence 7899998876431110 11111368999999999999987642 111111 11346678899999999998
Q ss_pred HHHHh
Q 036086 305 QFLLD 309 (355)
Q Consensus 305 ~~~~~ 309 (355)
+.+..
T Consensus 243 ~~~~~ 247 (350)
T 2qen_A 243 VVFGV 247 (350)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 9
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.10 E-value=3.5e-10 Score=105.96 Aligned_cols=168 Identities=11% Similarity=0.127 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCC-----CCHHHHHH--------
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKN-----LDFSTAVQ-------- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~-------- 190 (355)
+.+.+.|.+ +.. +++.|+|++|+|||||++.+.+. ... ..+|+..... .+....+.
T Consensus 19 ~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 87 (357)
T 2fna_A 19 EKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLELQKEINK 87 (357)
T ss_dssp HHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHHHHHHHH
Confidence 677888887 542 58999999999999999999874 222 2467776532 22222222
Q ss_pred --------------------------------------HHHHHHhhcCCCCcEEEEEeCCCCCC----hhhHHHHHHhhc
Q 036086 191 --------------------------------------EIRNRRNEIPSSKRLLFALDDVSHLN----DDNLANLRLLVS 228 (355)
Q Consensus 191 --------------------------------------~l~~~l~~~l~~kr~LlVlDdvw~~~----~~~~~~l~~~l~ 228 (355)
.+...+.+... ++++|||||++..+ .+.+..+ ..+.
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l-~~~~ 165 (357)
T 2fna_A 88 LVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL-AYAY 165 (357)
T ss_dssp HHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH-HHHH
T ss_pred HhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH-HHHH
Confidence 12222222222 48999999997421 2223333 3333
Q ss_pred cCCCCCcEEEEecCChhHhhhc----------ccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcC
Q 036086 229 DMRLVGFYVLVTTHSTSVATMM----------MQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEE 298 (355)
Q Consensus 229 ~~~~~gs~IlvTTR~~~va~~~----------~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~ 298 (355)
+.. .+..+|+|++.......+ .+.....+.+.+|+.+++.+++....-......... ..|...|+
T Consensus 166 ~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~ 240 (357)
T 2fna_A 166 DNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIG 240 (357)
T ss_dssp HHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHC
T ss_pred HcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhC
Confidence 223 467899999976532110 111114688999999999999987421011111121 67889999
Q ss_pred CCchHHHHHHh
Q 036086 299 GVTSLTQFLLD 309 (355)
Q Consensus 299 GlPla~~~~~~ 309 (355)
|.|+.++.+..
T Consensus 241 G~P~~l~~~~~ 251 (357)
T 2fna_A 241 GIPGWLTYFGF 251 (357)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999877653
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.09 E-value=1.4e-09 Score=94.53 Aligned_cols=177 Identities=14% Similarity=0.079 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccC-CCC-ceEEEEeCCCCCHHHHHHHHHHHHhh--c
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKS-RLP-FKVWYSVGKNLDFSTAVQEIRNRRNE--I 199 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~i~~~l~~~l~~--~ 199 (355)
+...+.+.+++... ..+.+.|+|++|+|||+||+.+++. ... .+. ..+.+..+.......+...+...... .
T Consensus 23 ~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (226)
T 2chg_A 23 DEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPI 98 (226)
T ss_dssp HHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCS
T ss_pred HHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHHHHHHhcccCC
Confidence 56777888877753 2333889999999999999999873 211 122 12334444444444333222222222 1
Q ss_pred CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChh-HhhhcccCCcccccCCCCChhhHHHHhhhhCCC
Q 036086 200 PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIYFSESNSWSNLNCELPP 278 (355)
Q Consensus 200 l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~ 278 (355)
..+++.+||+||++......++.+...+.... .+.++|+||+... +...+.... ..+.+.+++.++...++.+.+..
T Consensus 99 ~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 99 GGAPFKIIFLDEADALTADAQAALRRTMEMYS-KSCRFILSCNYVSRIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp TTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred CccCceEEEEeChhhcCHHHHHHHHHHHHhcC-CCCeEEEEeCChhhcCHHHHHhC-ceeecCCCCHHHHHHHHHHHHHH
Confidence 23678999999998666666777777776655 6778888887653 111101222 47899999999999999876532
Q ss_pred CCCCcchHHHHHHHHHHhcCCCchHH-HHHH
Q 036086 279 SSQEAHRVEDLETGSAMDEEGVTSLT-QFLL 308 (355)
Q Consensus 279 ~~~~~~~~~~~~~~i~~~c~GlPla~-~~~~ 308 (355)
.... --.+....++..++|-|..+ ..+.
T Consensus 177 ~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 177 EGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1111 11245566778999999754 4443
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.96 E-value=1.6e-09 Score=102.94 Aligned_cols=181 Identities=11% Similarity=0.067 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHhcCccc----cCC--CCceEEEEeCCCC-CHHHHHH----
Q 036086 124 ESSVDSVKNALLRD--GNTVRFIHIVGVSGTDETAIAHRVFTDDDV----KSR--LPFKVWYSVGKNL-DFSTAVQ---- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~----~~~--F~~~~wv~vs~~~-~~~~i~~---- 190 (355)
+.+.+++.++|... ....+.+.|+|++|+||||||+.+++...- ... ....+|++.+... +...++.
T Consensus 26 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 105 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAG 105 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHH
Confidence 67777777776542 344568999999999999999999873211 111 2234577655444 4443333
Q ss_pred ---------------HHHHHHhhcCCCCcEEEEEeCCCCCChhhHHHH-HHhhccCCCCCcEEEEecCChhHhhhc---c
Q 036086 191 ---------------EIRNRRNEIPSSKRLLFALDDVSHLNDDNLANL-RLLVSDMRLVGFYVLVTTHSTSVATMM---M 251 (355)
Q Consensus 191 ---------------~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l-~~~l~~~~~~gs~IlvTTR~~~va~~~---~ 251 (355)
.+...+.+.+..++.+|||||++......+..+ ...+.... .+..||+||+.......+ +
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l 184 (384)
T 2qby_B 106 KLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRV 184 (384)
T ss_dssp HHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHH
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHH
Confidence 223344455555566999999973211111222 33333333 467888888875321110 1
Q ss_pred -cCCcccccCCCCChhhHHHHhhhh---CCCCCCCcchHHHHHHHHHHhcC---CCch-HHHHHH
Q 036086 252 -QTVPEAEHLIYFSESNSWSNLNCE---LPPSSQEAHRVEDLETGSAMDEE---GVTS-LTQFLL 308 (355)
Q Consensus 252 -~~~~~~~~l~~L~~~~s~~Lf~~~---af~~~~~~~~~~~~~~~i~~~c~---GlPl-a~~~~~ 308 (355)
......+++.+++.++...+|... +|.....++ +....++..|+ |-|- ++..+.
T Consensus 185 ~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 185 LSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp HHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHH
Confidence 111147899999999999999886 443322222 33445666666 7764 444443
No 12
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=3.8e-09 Score=97.73 Aligned_cols=176 Identities=10% Similarity=0.074 Sum_probs=109.1
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccC-CCC-ceEEEEeCCCCCHHHHHHHHHHHHh---h
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKS-RLP-FKVWYSVGKNLDFSTAVQEIRNRRN---E 198 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~i~~~l~~~l~---~ 198 (355)
+...+.+.+++... ..+.+.++|++|+||||+|+.+.+. +.. .+. ..+++..+.......+ +.+...+. .
T Consensus 27 ~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~ 101 (323)
T 1sxj_B 27 KETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQKKL 101 (323)
T ss_dssp THHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHBCC
T ss_pred HHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHHH-HHHHHHHHhccc
Confidence 66777888887643 3333889999999999999999873 211 111 1234444443343332 23333333 2
Q ss_pred cC-CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChh-HhhhcccCCcccccCCCCChhhHHHHhhhhC
Q 036086 199 IP-SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 199 ~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
.+ .+++.++|+||++.-....++.+...+.... .++.+|+||.... +... +......+++.+++.++...++...+
T Consensus 102 ~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~il~~~~~~~l~~~-l~sr~~~i~~~~~~~~~~~~~l~~~~ 179 (323)
T 1sxj_B 102 HLPPGKHKIVILDEADSMTAGAQQALRRTMELYS-NSTRFAFACNQSNKIIEP-LQSQCAILRYSKLSDEDVLKRLLQII 179 (323)
T ss_dssp CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTT-TTEEEEEEESCGGGSCHH-HHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECcccCCHHHHHHHHHHHhccC-CCceEEEEeCChhhchhH-HHhhceEEeecCCCHHHHHHHHHHHH
Confidence 23 5568999999998655666777766666555 5678888776543 2222 22222579999999999999998764
Q ss_pred CCCCCCcchHHHHHHHHHHhcCCCch-HHHHHH
Q 036086 277 PPSSQEAHRVEDLETGSAMDEEGVTS-LTQFLL 308 (355)
Q Consensus 277 f~~~~~~~~~~~~~~~i~~~c~GlPl-a~~~~~ 308 (355)
...... --.+....++..|+|-|. ++..+.
T Consensus 180 ~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 180 KLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 211111 112455678899999994 444443
No 13
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.89 E-value=1.1e-08 Score=96.88 Aligned_cols=178 Identities=15% Similarity=0.129 Sum_probs=102.0
Q ss_pred hhHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHhcCccccCC------CCceEEEEeCCCCCHHHHHH-----
Q 036086 124 ESSVDSVKNALLRD--GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSR------LPFKVWYSVGKNLDFSTAVQ----- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~i~~----- 190 (355)
+.+.+++.+++... ....+.+.|+|++|+||||||+.+++. .... --..+|++.+...+...++.
T Consensus 25 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 102 (387)
T 2v1u_A 25 EAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVASAIAEA 102 (387)
T ss_dssp HHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHH
Confidence 77888888887543 345567889999999999999999873 2111 11345677665555444333
Q ss_pred -------------HHHHHHhhcC--CCCcEEEEEeCCCCCChh--hHHHHHHhhc--cC---CCCCcEEEEecCChhHhh
Q 036086 191 -------------EIRNRRNEIP--SSKRLLFALDDVSHLNDD--NLANLRLLVS--DM---RLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 191 -------------~l~~~l~~~l--~~kr~LlVlDdvw~~~~~--~~~~l~~~l~--~~---~~~gs~IlvTTR~~~va~ 248 (355)
.+...+.+.+ .+++.+|+||+++..... ..+.+...+. .. . .+..+|.||+......
T Consensus 103 l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~-~~~~~I~~t~~~~~~~ 181 (387)
T 2v1u_A 103 VGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDR-VWVSLVGITNSLGFVE 181 (387)
T ss_dssp HSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC------CEEEEECSCSTTSS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCC-ceEEEEEEECCCchHh
Confidence 1223333333 456899999999732111 2233332222 11 3 4567777777653221
Q ss_pred hc---ccC--CcccccCCCCChhhHHHHhhhhC---CCCCCCcchHHHHHHHHHHhcC---CCc-hHHHHH
Q 036086 249 MM---MQT--VPEAEHLIYFSESNSWSNLNCEL---PPSSQEAHRVEDLETGSAMDEE---GVT-SLTQFL 307 (355)
Q Consensus 249 ~~---~~~--~~~~~~l~~L~~~~s~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~c~---GlP-la~~~~ 307 (355)
.+ ... ....+.+.+++.++...++.+.+ +......+ +....++..++ |-| .++..+
T Consensus 182 ~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 182 NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHH
Confidence 10 111 11368999999999999998763 33222222 23445556666 988 444433
No 14
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.86 E-value=1.5e-08 Score=96.14 Aligned_cols=171 Identities=16% Similarity=0.117 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHhcC----CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCC-CceEEEEeCCCCCHHHHHHHH------
Q 036086 124 ESSVDSVKNALLRD----GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRL-PFKVWYSVGKNLDFSTAVQEI------ 192 (355)
Q Consensus 124 ~~~~~~l~~~L~~~----~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~l------ 192 (355)
+.+.+++.+++... .+..+.+.|+|++|+|||||++.+.+. ..... -..+|+..+...+...++..+
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~ 100 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEIARSLNI 100 (389)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCc
Confidence 77788888877652 223348899999999999999999873 33321 234567666655554444321
Q ss_pred ------------HHHHhhcC--CCCcEEEEEeCCCCCChhhHHHHHHhhccCCC---CCcEEEEecCChhHhhhcccC--
Q 036086 193 ------------RNRRNEIP--SSKRLLFALDDVSHLNDDNLANLRLLVSDMRL---VGFYVLVTTHSTSVATMMMQT-- 253 (355)
Q Consensus 193 ------------~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~---~gs~IlvTTR~~~va~~~~~~-- 253 (355)
...+.+.+ .+++.+|+||+++..+......+...+..... .+..||+||+....... +..
T Consensus 101 ~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~-l~~~~ 179 (389)
T 1fnn_A 101 PFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN-LDPST 179 (389)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT-SCHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH-hCHHh
Confidence 12222222 25688999999986556666666555532110 25678888877654333 221
Q ss_pred ----CcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhc
Q 036086 254 ----VPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDE 297 (355)
Q Consensus 254 ----~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c 297 (355)
....+++.+++.++..+++.+.+-.......--.+....++..+
T Consensus 180 ~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 180 RGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp HHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred hhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 11368999999999999998764210001111235566677888
No 15
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.85 E-value=7.9e-09 Score=97.74 Aligned_cols=171 Identities=14% Similarity=0.144 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCC---CceEEEEeCCCCCHH------------
Q 036086 124 ESSVDSVKNALLRD--GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRL---PFKVWYSVGKNLDFS------------ 186 (355)
Q Consensus 124 ~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~------------ 186 (355)
+.+.+.+.+++... ......+.|+|++|+||||||+.+++ .....+ ...+|+..+...+..
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~ 103 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDV 103 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 77888888877643 34456889999999999999999987 333322 134566644322322
Q ss_pred ----------HHHHHHHHHHhhcCCCCcEEEEEeCCCCC----ChhhHHHHHHhhcc-CCCCCcEEEEecCChhHhhhcc
Q 036086 187 ----------TAVQEIRNRRNEIPSSKRLLFALDDVSHL----NDDNLANLRLLVSD-MRLVGFYVLVTTHSTSVATMMM 251 (355)
Q Consensus 187 ----------~i~~~l~~~l~~~l~~kr~LlVlDdvw~~----~~~~~~~l~~~l~~-~~~~gs~IlvTTR~~~va~~~~ 251 (355)
.+...+...+.. .+++.+||||+++.. +...+..+...+.. .. .+..+|+||+....... +
T Consensus 104 ~~~~~~~~~~~~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~-~~~~~I~~~~~~~~~~~-~ 179 (386)
T 2qby_A 104 KVPFTGLSIAELYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNK-SKISFIGITNDVKFVDL-L 179 (386)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC---EEEEEEESCGGGGGG-C
T ss_pred CCCCCCCCHHHHHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCC-CeEEEEEEECCCChHhh-h
Confidence 222222233322 356899999999731 12334444443322 12 35567888876654332 2
Q ss_pred cC------CcccccCCCCChhhHHHHhhhhC---CCCCCCcchHHHHHHHHHHhcC---CCchH
Q 036086 252 QT------VPEAEHLIYFSESNSWSNLNCEL---PPSSQEAHRVEDLETGSAMDEE---GVTSL 303 (355)
Q Consensus 252 ~~------~~~~~~l~~L~~~~s~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~c~---GlPla 303 (355)
.. ....+++.+++.++.+++|.+.+ +..... ...+...++..++ |-|..
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~ 240 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL---PDNVIKLCAALAAREHGDARR 240 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS---CHHHHHHHHHHHHHTTCCHHH
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhcCCHHH
Confidence 11 11378999999999999998753 221121 2344555666666 88863
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=7.1e-08 Score=89.23 Aligned_cols=173 Identities=11% Similarity=0.074 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCC-CC-ceEEEEeCCCCCHHHHHHHHHHHHhh-cC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSR-LP-FKVWYSVGKNLDFSTAVQEIRNRRNE-IP 200 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~i~~~l~~~l~~-~l 200 (355)
+..++.+.+++... ..+.+.++|++|+||||+|+.+++. +... +. ..+.+..+.......+...+...... .+
T Consensus 31 ~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (327)
T 1iqp_A 31 EHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGINVIREKVKEFARTKPI 106 (327)
T ss_dssp HHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCG
T ss_pred HHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCc
Confidence 66777777777653 3334889999999999999999873 2111 11 12223322211111111111111111 12
Q ss_pred -CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChh-HhhhcccCCcccccCCCCChhhHHHHhhhhCCC
Q 036086 201 -SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIYFSESNSWSNLNCELPP 278 (355)
Q Consensus 201 -~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~ 278 (355)
.+++.++|+|+++..+...++.+...+.... .++++|+||.... +... +......+.+.+++.++...++...+..
T Consensus 107 ~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-~~~~~i~~~~~~~~l~~~-l~sr~~~~~~~~l~~~~~~~~l~~~~~~ 184 (327)
T 1iqp_A 107 GGASFKIIFLDEADALTQDAQQALRRTMEMFS-SNVRFILSCNYSSKIIEP-IQSRCAIFRFRPLRDEDIAKRLRYIAEN 184 (327)
T ss_dssp GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHH-HHHTEEEEECCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcC-CCCeEEEEeCCccccCHH-HHhhCcEEEecCCCHHHHHHHHHHHHHh
Confidence 2678899999998666677777877776655 6788888876543 1111 1111147899999999999988876432
Q ss_pred CCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 279 SSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 279 ~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
..- .--.+....++..++|-|-.+
T Consensus 185 ~~~--~~~~~~~~~l~~~~~g~~r~~ 208 (327)
T 1iqp_A 185 EGL--ELTEEGLQAILYIAEGDMRRA 208 (327)
T ss_dssp TTC--EECHHHHHHHHHHHTTCHHHH
T ss_pred cCC--CCCHHHHHHHHHHCCCCHHHH
Confidence 211 112345567778889988644
No 17
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.51 E-value=1e-06 Score=83.07 Aligned_cols=175 Identities=13% Similarity=0.080 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCC-------------------CCceEEEEeCCCCC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSR-------------------LPFKVWYSVGKNLD 184 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~vs~~~~ 184 (355)
+...+.+.+.+... .....+.|+|+.|+||||+|+.+.+....... +.....+..+....
T Consensus 22 ~~~~~~L~~~l~~~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (373)
T 1jr3_A 22 EHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTK 100 (373)
T ss_dssp HHHHHHHHHHHHHT-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCC
T ss_pred HHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCC
Confidence 56667777777643 22346789999999999999998763211111 00123333222111
Q ss_pred HHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChh-HhhhcccCCcccccCCC
Q 036086 185 FSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIY 262 (355)
Q Consensus 185 ~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~ 262 (355)
... .+.+...+... ..+++.++|+||+..-+...++.+...+.... .+..+|++|.... +... +......+++.+
T Consensus 101 ~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~-l~sr~~~i~~~~ 177 (373)
T 1jr3_A 101 VED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVT-ILSRCLQFHLKA 177 (373)
T ss_dssp SSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCC-SSEEEEEEESCGGGSCHH-HHTTSEEEECCC
T ss_pred HHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCC-CceEEEEEeCChHhCcHH-HHhheeEeeCCC
Confidence 111 11222222221 34677899999998666677777877776544 5666776665432 2222 222225789999
Q ss_pred CChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 263 FSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 263 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
++.++...++.+.+-.... . --.+....++..++|-|..+
T Consensus 178 l~~~~~~~~l~~~~~~~~~-~-~~~~a~~~l~~~~~G~~r~~ 217 (373)
T 1jr3_A 178 LDVEQIRHQLEHILNEEHI-A-HEPRALQLLARAAEGSLRDA 217 (373)
T ss_dssp CCHHHHHHHHHHHHHHHTC-C-BCHHHHHHHHHHSSSCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHHCCCCHHHH
Confidence 9999999988765411111 1 11244567788899999655
No 18
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.41 E-value=2e-07 Score=90.64 Aligned_cols=151 Identities=15% Similarity=0.074 Sum_probs=85.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCc--eEEEEeCCCCCHHHHHHHH----HHHHhhcCCCCcEEEEEeCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPF--KVWYSVGKNLDFSTAVQEI----RNRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~i~~~l----~~~l~~~l~~kr~LlVlDdvw~ 214 (355)
...+.|+|++|+||||||+.+.+ .+...|.. .++++.+.- ..++...+ ...+...+..+.-+|+|||+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~ 205 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSEKF--LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQF 205 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHHHH--HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHHHH--HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCccc
Confidence 66789999999999999999998 44333322 234433221 11222111 1122223333677999999974
Q ss_pred CCh--hhHHHHHHhhcc-CCCCCcEEEEecCCh---------hHhhhcccCCcccccCCCCChhhHHHHhhhhCCCC-CC
Q 036086 215 LND--DNLANLRLLVSD-MRLVGFYVLVTTHST---------SVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPS-SQ 281 (355)
Q Consensus 215 ~~~--~~~~~l~~~l~~-~~~~gs~IlvTTR~~---------~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~-~~ 281 (355)
... ...+.+...+.. .. .|..||+||... .+... +... ..+.+.+++.++-..++.+.+-.. ..
T Consensus 206 l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR-~~~g-~~i~l~~p~~e~r~~iL~~~~~~~~~~ 282 (440)
T 2z4s_A 206 LIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSR-FQMG-LVAKLEPPDEETRKSIARKMLEIEHGE 282 (440)
T ss_dssp GSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHH-HHSS-BCCBCCCCCHHHHHHHHHHHHHHHTCC
T ss_pred ccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhh-ccCC-eEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 322 233444444432 23 567888888762 22222 3333 578999999999999998765211 11
Q ss_pred CcchHHHHHHHHHHhcCCCc
Q 036086 282 EAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 282 ~~~~~~~~~~~i~~~c~GlP 301 (355)
.++ ++...|+..+.|-+
T Consensus 283 i~~---e~l~~la~~~~gn~ 299 (440)
T 2z4s_A 283 LPE---EVLNFVAENVDDNL 299 (440)
T ss_dssp CCT---THHHHHHHHCCSCH
T ss_pred CCH---HHHHHHHHhcCCCH
Confidence 111 23344556666665
No 19
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.40 E-value=2.6e-07 Score=81.26 Aligned_cols=163 Identities=12% Similarity=0.045 Sum_probs=90.1
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCc
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKR 204 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr 204 (355)
...+.+..++.. ...+.+.|+|++|+||||||+.+.+. .........|++.+.-.+. +...+ +.+ .+.
T Consensus 38 ~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~------~~~~~-~~~-~~~ 105 (242)
T 3bos_A 38 ELIGALKSAASG--DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI------STALL-EGL-EQF 105 (242)
T ss_dssp HHHHHHHHHHHT--CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS------CGGGG-TTG-GGS
T ss_pred HHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH------HHHHH-Hhc-cCC
Confidence 344445554443 24567889999999999999999873 3222234456665432110 00001 111 346
Q ss_pred EEEEEeCCCCCChhh--HHHHHHhhccC-CCCC-cEEEEecCChh---------HhhhcccCCcccccCCCCChhhHHHH
Q 036086 205 LLFALDDVSHLNDDN--LANLRLLVSDM-RLVG-FYVLVTTHSTS---------VATMMMQTVPEAEHLIYFSESNSWSN 271 (355)
Q Consensus 205 ~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~~g-s~IlvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~L 271 (355)
.+||+||+....... .+.+...+... . .+ .++|+||+... +... +... ..+.+.+++.++..++
T Consensus 106 ~vliiDe~~~~~~~~~~~~~l~~~l~~~~~-~~~~~ii~~~~~~~~~~~~~~~~l~~r-~~~~-~~i~l~~~~~~~~~~~ 182 (242)
T 3bos_A 106 DLICIDDVDAVAGHPLWEEAIFDLYNRVAE-QKRGSLIVSASASPMEAGFVLPDLVSR-MHWG-LTYQLQPMMDDEKLAA 182 (242)
T ss_dssp SEEEEETGGGGTTCHHHHHHHHHHHHHHHH-HCSCEEEEEESSCTTTTTCCCHHHHHH-HHHS-EEEECCCCCGGGHHHH
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHH-cCCCeEEEEcCCCHHHHHHhhhhhhhH-hhcC-ceEEeCCCCHHHHHHH
Confidence 799999997433222 33333332211 1 22 24777766322 1222 2222 5789999999999999
Q ss_pred hhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 272 LNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 272 f~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
+.+.+-.... .--.+....++..++|-+-.+
T Consensus 183 l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l 213 (242)
T 3bos_A 183 LQRRAAMRGL--QLPEDVGRFLLNRMARDLRTL 213 (242)
T ss_dssp HHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHHccCCHHHH
Confidence 9876521111 112345567778888877544
No 20
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.30 E-value=1.4e-05 Score=74.66 Aligned_cols=169 Identities=11% Similarity=0.083 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcccc--------------------CCCCceEEEEeC---
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVK--------------------SRLPFKVWYSVG--- 180 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs--- 180 (355)
++..+.+.+.+.. +.-...+-++|+.|+||||+|+.+.+.-... .|++ ..++...
T Consensus 8 ~~~~~~l~~~i~~-~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQA-GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp HHHHHHHHHHHHT-TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred HHHHHHHHHHHHc-CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 3444555555553 2334578899999999999999876521110 1233 2344432
Q ss_pred CCCCHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCCh-hHhhhcccCCcccc
Q 036086 181 KNLDFSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHST-SVATMMMQTVPEAE 258 (355)
Q Consensus 181 ~~~~~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~ 258 (355)
....+..+ +++.+.+... ..+++-++|+|++..-+....+.+...+..-. .++.+|++|.+. .+... +.+....+
T Consensus 86 ~~~~i~~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~-~~~~~Il~t~~~~~l~~t-i~SRc~~~ 162 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPP-AETWFFLATREPERLLAT-LRSRCRLH 162 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGGGSCHH-HHTTSEEE
T ss_pred CCCCHHHH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCC-CCeEEEEEeCChHhCcHH-Hhhcceee
Confidence 23333332 2444443322 24677899999998666667777877776554 566766666554 33333 32333679
Q ss_pred cCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 259 HLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 259 ~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
++.++++++....+.+.. . -+ .+....++..++|-|..+
T Consensus 163 ~~~~~~~~~~~~~L~~~~--~-~~----~~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSREV--T-MS----QDALLAALRLSAGSPGAA 201 (334)
T ss_dssp ECCCCCHHHHHHHHHHHC--C-CC----HHHHHHHHHHTTTCHHHH
T ss_pred eCCCCCHHHHHHHHHHhc--C-CC----HHHHHHHHHHcCCCHHHH
Confidence 999999999999888775 1 11 234456778899999543
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.30 E-value=1.7e-07 Score=79.11 Aligned_cols=144 Identities=11% Similarity=0.078 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccc---cC--CCCceEEEEeCC----CCCHHHHHHHHHH
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDV---KS--RLPFKVWYSVGK----NLDFSTAVQEIRN 194 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~---~~--~F~~~~wv~vs~----~~~~~~i~~~l~~ 194 (355)
+...+++.+++.. .....+.|+|++|+||||||+.+.+...- .. .....+++..+. ..........+..
T Consensus 28 ~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (195)
T 1jbk_A 28 DEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKG 105 (195)
T ss_dssp HHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHH
Confidence 6778888888764 33455789999999999999998873211 00 011223343221 1111111111222
Q ss_pred HHhhcC-CCCcEEEEEeCCCCCC--------hhhHHHHHHhhccCCCCCcEEEEecCChhHhhhc-----ccCCcccccC
Q 036086 195 RRNEIP-SSKRLLFALDDVSHLN--------DDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMM-----MQTVPEAEHL 260 (355)
Q Consensus 195 ~l~~~l-~~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~-----~~~~~~~~~l 260 (355)
.+.... .+++.+|+|||+.... ......+...+.. . +..+|.||......... +......+.+
T Consensus 106 ~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-~--~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~ 182 (195)
T 1jbk_A 106 VLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-G--ELHCVGATTLDEYRQYIEKDAALERRFQKVFV 182 (195)
T ss_dssp HHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-T--SCCEEEEECHHHHHHHTTTCHHHHTTEEEEEC
T ss_pred HHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-C--CeEEEEeCCHHHHHHHHhcCHHHHHHhceeec
Confidence 221111 3567899999997321 1123334333332 2 34567776655432110 1111135788
Q ss_pred CCCChhhHHHHh
Q 036086 261 IYFSESNSWSNL 272 (355)
Q Consensus 261 ~~L~~~~s~~Lf 272 (355)
.+++.++..+++
T Consensus 183 ~~p~~~~~~~il 194 (195)
T 1jbk_A 183 AEPSVEDTIAIL 194 (195)
T ss_dssp CCCCHHHHHTTC
T ss_pred CCCCHHHHHHHh
Confidence 888888776654
No 22
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.29 E-value=2.4e-06 Score=78.54 Aligned_cols=173 Identities=13% Similarity=0.021 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHHHh--hcC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLP-FKVWYSVGKNLDFSTAVQEIRNRRN--EIP 200 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~l~~~l~--~~l 200 (355)
+..++.+.+++.. +..+.+-++|++|+||||+|+.+.+.-. ...+. ..+.+..+.......+. .....+. ..+
T Consensus 23 ~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 98 (319)
T 2chq_A 23 DEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVR-HKIKEFARTAPI 98 (319)
T ss_dssp HHHHHHHHTTTTT--TCCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTTSS-HHHHHHHHSCCS
T ss_pred HHHHHHHHHHHhC--CCCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHHHH-HHHHHHHhcCCC
Confidence 4455555555543 3333388999999999999999887310 11111 12233433322211111 1112221 112
Q ss_pred -CCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChh-HhhhcccCCcccccCCCCChhhHHHHhhhhCCC
Q 036086 201 -SSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIYFSESNSWSNLNCELPP 278 (355)
Q Consensus 201 -~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~ 278 (355)
.+++.++|+|++..-.....+.+...+.... .++.+|+||.... +... +......+.+.+++.++...++.+.+-.
T Consensus 99 ~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-~~~~~i~~~~~~~~l~~~-l~sr~~~i~~~~~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 99 GGAPFKIIFLDEADALTADAQAALRRTMEMYS-KSCRFILSCNYVSRIIEP-IQSRCAVFRFKPVPKEAMKKRLLEICEK 176 (319)
T ss_dssp SSCCCEEEEEETGGGSCHHHHHTTGGGTSSSS-SSEEEEEEESCGGGSCHH-HHTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred CCCCceEEEEeCCCcCCHHHHHHHHHHHHhcC-CCCeEEEEeCChhhcchH-HHhhCeEEEecCCCHHHHHHHHHHHHHH
Confidence 3678899999997555566666666665544 5677777776543 2222 2122257899999999999888766422
Q ss_pred CCCCcchHHHHHHHHHHhcCCCchHH
Q 036086 279 SSQEAHRVEDLETGSAMDEEGVTSLT 304 (355)
Q Consensus 279 ~~~~~~~~~~~~~~i~~~c~GlPla~ 304 (355)
..- . --.+....++..++|-|-.+
T Consensus 177 ~~~-~-i~~~~l~~l~~~~~G~~r~~ 200 (319)
T 2chq_A 177 EGV-K-ITEDGLEALIYISGGDFRKA 200 (319)
T ss_dssp TCC-C-BCHHHHHHHHHTTTTCHHHH
T ss_pred cCC-C-CCHHHHHHHHHHcCCCHHHH
Confidence 211 1 11244566778888888543
No 23
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.26 E-value=9.8e-06 Score=74.81 Aligned_cols=169 Identities=12% Similarity=0.098 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHhcC---CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcC
Q 036086 124 ESSVDSVKNALLRD---GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIP 200 (355)
Q Consensus 124 ~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l 200 (355)
+..++.+..++... ......+.|+|++|+||||||+.+.+. .... ..++..+....... +...+...+
T Consensus 18 ~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~~----l~~~l~~~~ 88 (324)
T 1hqc_A 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPGD----LAAILANSL 88 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHHH----HHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChHH----HHHHHHHhc
Confidence 45555665555421 223456789999999999999999873 2221 23444443333322 223333322
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHHhhccCC-------C----------CCcEEEEecCCh-hHhhhcccCC-cccccCC
Q 036086 201 SSKRLLFALDDVSHLNDDNLANLRLLVSDMR-------L----------VGFYVLVTTHST-SVATMMMQTV-PEAEHLI 261 (355)
Q Consensus 201 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-------~----------~gs~IlvTTR~~-~va~~~~~~~-~~~~~l~ 261 (355)
.+..+|+||++..........+...+.... . .+.++|.||... .+... +-.. ...+.+.
T Consensus 89 -~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~-l~~R~~~~i~l~ 166 (324)
T 1hqc_A 89 -EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP-LLSRFGIVEHLE 166 (324)
T ss_dssp -CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCS-TTTTCSCEEECC
T ss_pred -cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHH-HHhcccEEEecC
Confidence 356799999998655556666655544320 0 123455555433 22222 1111 1478999
Q ss_pred CCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchHHH
Q 036086 262 YFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSLTQ 305 (355)
Q Consensus 262 ~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla~~ 305 (355)
+++.++...++.+.+..... .--.+....++..|+|.|-.+.
T Consensus 167 ~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~ 208 (324)
T 1hqc_A 167 YYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAK 208 (324)
T ss_dssp CCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHH
Confidence 99999999888776532211 1123556778888999996653
No 24
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.19 E-value=1e-05 Score=78.57 Aligned_cols=162 Identities=14% Similarity=0.147 Sum_probs=87.6
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC-CCCHHHHHHHHHHHHhhcCCCCcEE
Q 036086 128 DSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK-NLDFSTAVQEIRNRRNEIPSSKRLL 206 (355)
Q Consensus 128 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~l~~~l~~~l~~kr~L 206 (355)
..|...+.. +..+.+-++|++|+||||||+.+.+. .... ++.++. ......+-..+.........+++.+
T Consensus 39 ~~L~~~i~~--~~~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~i 109 (447)
T 3pvs_A 39 KPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEIREAIERARQNRNAGRRTI 109 (447)
T ss_dssp SHHHHHHHH--TCCCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHc--CCCcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHHHHHHHHHHHhhhcCCCcE
Confidence 345555553 34467889999999999999999873 3222 333332 2233333221111111122567899
Q ss_pred EEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChh--HhhhcccCCcccccCCCCChhhHHHHhhhhCCCC--C--
Q 036086 207 FALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTS--VATMMMQTVPEAEHLIYFSESNSWSNLNCELPPS--S-- 280 (355)
Q Consensus 207 lVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~--va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~-- 280 (355)
|++|++..-+....+.+...+..+. -.-|..||.+.. +...+.... .++.+.+++.++...++.+..-.. .
T Consensus 110 LfIDEI~~l~~~~q~~LL~~le~~~--v~lI~att~n~~~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~ 186 (447)
T 3pvs_A 110 LFVDEVHRFNKSQQDAFLPHIEDGT--ITFIGATTENPSFELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYG 186 (447)
T ss_dssp EEEETTTCC------CCHHHHHTTS--CEEEEEESSCGGGSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSST
T ss_pred EEEeChhhhCHHHHHHHHHHHhcCc--eEEEecCCCCcccccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 9999998666666666666666432 222334665543 222202222 578899999999998887754210 0
Q ss_pred -CCcchHHHHHHHHHHhcCCCc
Q 036086 281 -QEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 281 -~~~~~~~~~~~~i~~~c~GlP 301 (355)
....--.+....++..++|-+
T Consensus 187 ~~~~~i~~~al~~L~~~~~Gd~ 208 (447)
T 3pvs_A 187 GQDIVLPDETRRAIAELVNGDA 208 (447)
T ss_dssp TSSEECCHHHHHHHHHHHCSCH
T ss_pred cccCcCCHHHHHHHHHHCCCCH
Confidence 111112344455556676665
No 25
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=7.7e-06 Score=76.57 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=62.4
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCCh-hHhhhcccCCcccccCCCCChhhHHHHhhhhCCCCC
Q 036086 202 SKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHST-SVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSS 280 (355)
Q Consensus 202 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~ 280 (355)
+++-+++||++..-+....+.+...+.... .++.+|++|... .+... +.+....+++.+++.++....+.+.+-...
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~l~~~-l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPIIAP-IKSQCLLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHST-TTEEEEEEESCSCSSCHH-HHTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHHHHHH-HHhhceEEecCCcCHHHHHHHHHHHHHHcC
Confidence 366799999998666666677777666544 567777777653 23222 222225789999999999988877642111
Q ss_pred CCcchH-HHHHHHHHHhcCCCchH
Q 036086 281 QEAHRV-EDLETGSAMDEEGVTSL 303 (355)
Q Consensus 281 ~~~~~~-~~~~~~i~~~c~GlPla 303 (355)
-. -- .+....|+..++|-+-.
T Consensus 211 ~~--~~~~~~l~~i~~~~~G~~r~ 232 (354)
T 1sxj_E 211 IQ--LETKDILKRIAQASNGNLRV 232 (354)
T ss_dssp CE--ECCSHHHHHHHHHHTTCHHH
T ss_pred CC--CCcHHHHHHHHHHcCCCHHH
Confidence 10 01 24556677888888843
No 26
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.11 E-value=4.1e-05 Score=68.24 Aligned_cols=156 Identities=12% Similarity=0.128 Sum_probs=80.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC--
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDF--STAVQEIRNRRNEIPSSKRLLFALDDVSHLN-- 216 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~-- 216 (355)
.+-+-++|++|+|||+||+.+.+. ...+ .+.+..+.-.+. ......+...+.........+|+||++..-.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~ 113 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 113 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC------
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcc
Confidence 345779999999999999999873 2222 233333321110 0001112222222223457899999997420
Q ss_pred -------------hhhHHHHHHhhccC-CCCCcEEEEecCChhH-hhhccc--CCcccccCCCCChhhHHHHhhhhCCCC
Q 036086 217 -------------DDNLANLRLLVSDM-RLVGFYVLVTTHSTSV-ATMMMQ--TVPEAEHLIYFSESNSWSNLNCELPPS 279 (355)
Q Consensus 217 -------------~~~~~~l~~~l~~~-~~~gs~IlvTTR~~~v-a~~~~~--~~~~~~~l~~L~~~~s~~Lf~~~af~~ 279 (355)
......+...+... ...+..||.||..... -..... .-...+.+.+.+.++-.++|.+.+-..
T Consensus 114 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~ 193 (262)
T 2qz4_A 114 RSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL 193 (262)
T ss_dssp -------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT
T ss_pred ccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC
Confidence 11222333333321 1034566667755432 111011 112467788999999988887764221
Q ss_pred CCCcchHHHHHHHHHHhcCCCch
Q 036086 280 SQEAHRVEDLETGSAMDEEGVTS 302 (355)
Q Consensus 280 ~~~~~~~~~~~~~i~~~c~GlPl 302 (355)
............++..+.|.+-
T Consensus 194 -~~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 194 -KLTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp -TCCBTHHHHHHHHHHTCTTCCH
T ss_pred -CCCcchhhHHHHHHHHCCCCCH
Confidence 1112222334677888888864
No 27
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=1.1e-05 Score=75.34 Aligned_cols=173 Identities=11% Similarity=0.056 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCc-eEEEEeCCCCCHHHHHHHHHHHHhh----
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPF-KVWYSVGKNLDFSTAVQEIRNRRNE---- 198 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~l~~~l~~---- 198 (355)
+..++.+..++... ..+.+.++|+.|+||||+|+.+.+.-.....+.. ...+..+.......+ .+.......
T Consensus 43 ~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 119 (353)
T 1sxj_D 43 DHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFARLTVS 119 (353)
T ss_dssp CTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhcC--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHhhhccc
Confidence 56677777777643 2223789999999999999998873211111111 223333332233222 211111211
Q ss_pred ---------cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChh-HhhhcccCCcccccCCCCChhhH
Q 036086 199 ---------IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIYFSESNS 268 (355)
Q Consensus 199 ---------~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~L~~~~s 268 (355)
.-.+++-+|++|++..........+...+.... ...++|++|.... +...+.... ..+.+.+++.++.
T Consensus 120 ~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~ 197 (353)
T 1sxj_D 120 KPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-GVTRFCLICNYVTRIIDPLASQC-SKFRFKALDASNA 197 (353)
T ss_dssp CCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHHHHHHS-EEEECCCCCHHHH
T ss_pred ccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-CCceEEEEeCchhhCcchhhccC-ceEEeCCCCHHHH
Confidence 112455699999987556666677776666555 5667777664432 222201112 4688999999999
Q ss_pred HHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCchH
Q 036086 269 WSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTSL 303 (355)
Q Consensus 269 ~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPla 303 (355)
...+.+.+-...- .--++....|+..++|-|-.
T Consensus 198 ~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~ 230 (353)
T 1sxj_D 198 IDRLRFISEQENV--KCDDGVLERILDISAGDLRR 230 (353)
T ss_dssp HHHHHHHHHTTTC--CCCHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHH
Confidence 8888775422111 11135567788889998854
No 28
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.03 E-value=1.4e-05 Score=67.36 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=51.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIP-------SSKRLLFALDDVS 213 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l-------~~kr~LlVlDdvw 213 (355)
-..+.|+|+.|+|||||++.+++.......+. ..+++ ..++...+.......- -.+.-+|||||++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~ 110 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLG 110 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCC
Confidence 46789999999999999999987322122222 23443 2333321111111100 0145689999998
Q ss_pred CCChhhHH--HHHHhhcc-CCCCCcEEEEecCC
Q 036086 214 HLNDDNLA--NLRLLVSD-MRLVGFYVLVTTHS 243 (355)
Q Consensus 214 ~~~~~~~~--~l~~~l~~-~~~~gs~IlvTTR~ 243 (355)
....+.|. .+...+.. .. .|..||+||..
T Consensus 111 ~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~ 142 (180)
T 3ec2_A 111 SERLSDWQRELISYIITYRYN-NLKSTIITTNY 142 (180)
T ss_dssp SSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCC
T ss_pred CCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCC
Confidence 43333443 23332322 12 46678888864
No 29
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.98 E-value=1.6e-05 Score=73.72 Aligned_cols=140 Identities=16% Similarity=0.177 Sum_probs=74.7
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHH----HHHhhcCCCC
Q 036086 128 DSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIR----NRRNEIPSSK 203 (355)
Q Consensus 128 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~----~~l~~~l~~k 203 (355)
..+..++.........+.|+|++|+||||||+.+.+. ....-...++++.+.- ...+...+. ..+...+ .+
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~-~~ 98 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSADDF--AQAMVEHLKKGTINEFRNMY-KS 98 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHHHH--HHHHHHHHHHTCHHHHHHHH-HT
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHHHH--HHHHHHHHHcCcHHHHHHHh-cC
Confidence 3444444432324556889999999999999999873 2111112234443211 111111110 1111111 23
Q ss_pred cEEEEEeCCCCCCh--hhHHHHHHhhcc-CCCCCcEEEEecCChh---------HhhhcccCCcccccCCCCChhhHHHH
Q 036086 204 RLLFALDDVSHLND--DNLANLRLLVSD-MRLVGFYVLVTTHSTS---------VATMMMQTVPEAEHLIYFSESNSWSN 271 (355)
Q Consensus 204 r~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~~gs~IlvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~L 271 (355)
..+|++||+..... ...+.+...+.. .. .|..||+||.... +... +... .++.+.+ +.++...+
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~~l~~l~~~L~sR-~~~~-~~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKLDGVSDRLVSR-FEGG-ILVEIEL-DNKTRFKI 174 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGCTTSCHHHHHH-HHTS-EEEECCC-CHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChHHHHHhhhHhhhc-ccCc-eEEEeCC-CHHHHHHH
Confidence 67999999974222 223344443322 12 4567888775331 2222 2222 4689999 99999998
Q ss_pred hhhhC
Q 036086 272 LNCEL 276 (355)
Q Consensus 272 f~~~a 276 (355)
+...+
T Consensus 175 l~~~~ 179 (324)
T 1l8q_A 175 IKEKL 179 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 30
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.97 E-value=3.6e-05 Score=69.40 Aligned_cols=150 Identities=14% Similarity=0.150 Sum_probs=80.2
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCC---CCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKN---LDFSTAVQEIRNRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~ 214 (355)
.....-+-|+|++|+|||+||+.+.+. ....| +.+..+.. .........+...+......+..+|+||++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIER 135 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhh
Confidence 345677889999999999999999873 22111 12222211 11111112333333333446789999999752
Q ss_pred C----------ChhhHHHHHHhhcc---CCCCCcEEEEecCChhHhhh--cccCCcccccCCCCCh-hhHHHHhhhhCCC
Q 036086 215 L----------NDDNLANLRLLVSD---MRLVGFYVLVTTHSTSVATM--MMQTVPEAEHLIYFSE-SNSWSNLNCELPP 278 (355)
Q Consensus 215 ~----------~~~~~~~l~~~l~~---~~~~gs~IlvTTR~~~va~~--~~~~~~~~~~l~~L~~-~~s~~Lf~~~af~ 278 (355)
- +......+...+.. .. ....||.||........ +.+.-...+++.+++. ++...++.+..
T Consensus 136 l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~-~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-- 212 (272)
T 1d2n_A 136 LLDYVPIGPRFSNLVLQALLVLLKKAPPQG-RKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-- 212 (272)
T ss_dssp HTTCBTTTTBCCHHHHHHHHHHTTCCCSTT-CEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT--
T ss_pred hhccCCCChhHHHHHHHHHHHHhcCccCCC-CCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC--
Confidence 1 22223334333332 11 23446667776643222 0222125688999988 66677766531
Q ss_pred CCCCcchHHHHHHHHHHhcCCC
Q 036086 279 SSQEAHRVEDLETGSAMDEEGV 300 (355)
Q Consensus 279 ~~~~~~~~~~~~~~i~~~c~Gl 300 (355)
. -. ......++..+.|.
T Consensus 213 ~-~~----~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 213 N-FK----DKERTTIAQQVKGK 229 (272)
T ss_dssp C-SC----HHHHHHHHHHHTTS
T ss_pred C-CC----HHHHHHHHHHhcCC
Confidence 1 11 23455667777774
No 31
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.96 E-value=3.1e-05 Score=70.13 Aligned_cols=167 Identities=13% Similarity=0.152 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHhcC-----------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC--HHHHHH
Q 036086 124 ESSVDSVKNALLRD-----------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD--FSTAVQ 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~ 190 (355)
+..+++|.+.+... -....-+-|+|++|+||||||+.+.+. ....| +.+..+.-.. ......
T Consensus 23 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~~~~~~~~~ 97 (285)
T 3h4m_A 23 EKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELVKKFIGEGAS 97 (285)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGCCCSTTHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHHHhccchHHH
Confidence 56666666555321 123456889999999999999999873 22221 2232221111 011111
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCC-----------Chh---hHHHHHHhhc--cCCCCCcEEEEecCChhHhh-hccc-
Q 036086 191 EIRNRRNEIPSSKRLLFALDDVSHL-----------NDD---NLANLRLLVS--DMRLVGFYVLVTTHSTSVAT-MMMQ- 252 (355)
Q Consensus 191 ~l~~~l~~~l~~kr~LlVlDdvw~~-----------~~~---~~~~l~~~l~--~~~~~gs~IlvTTR~~~va~-~~~~- 252 (355)
.+...+......+..+|+||++..- +.. .+..+...+. ... .+..||.||....... ....
T Consensus 98 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vI~ttn~~~~l~~~l~~~ 176 (285)
T 3h4m_A 98 LVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-GDVKIIGATNRPDILDPAILRP 176 (285)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-SSEEEEEECSCGGGBCHHHHST
T ss_pred HHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCchhcCHHHcCC
Confidence 1222222222346789999999521 111 1222222222 122 3566777886543211 1011
Q ss_pred -CCcccccCCCCChhhHHHHhhhhCCCCC-CCcchHHHHHHHHHHhcCCC
Q 036086 253 -TVPEAEHLIYFSESNSWSNLNCELPPSS-QEAHRVEDLETGSAMDEEGV 300 (355)
Q Consensus 253 -~~~~~~~l~~L~~~~s~~Lf~~~af~~~-~~~~~~~~~~~~i~~~c~Gl 300 (355)
.....+.+.+.+.++-.++|...+.... .....+ ..++..+.|.
T Consensus 177 ~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~----~~l~~~~~g~ 222 (285)
T 3h4m_A 177 GRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNL----EEIAKMTEGC 222 (285)
T ss_dssp TSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHHCTTC
T ss_pred CcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCH----HHHHHHcCCC
Confidence 1124688999999999999987754322 122233 3445666664
No 32
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=5e-05 Score=70.83 Aligned_cols=170 Identities=9% Similarity=0.058 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccC-CCCc-eEEEEeCCCCCHHHHHHHHHHHHhh---
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKS-RLPF-KVWYSVGKNLDFSTAVQEIRNRRNE--- 198 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~vs~~~~~~~i~~~l~~~l~~--- 198 (355)
+...+.|..++.. +.++-+.++|+.|+||||+|+.+.+. +.. .+.. ..-+..+.......+ +.....+.+
T Consensus 31 ~~~~~~L~~~i~~--g~~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~~~i-r~~i~~~~~~~~ 105 (340)
T 1sxj_C 31 NEVITTVRKFVDE--GKLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGIDVV-RNQIKDFASTRQ 105 (340)
T ss_dssp HHHHHHHHHHHHT--TCCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHHHH-HTHHHHHHHBCC
T ss_pred HHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccHHHH-HHHHHHHHhhcc
Confidence 3444555555553 33333889999999999999998763 211 1111 122333333333322 222222221
Q ss_pred cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChh-HhhhcccCCcccccCCCCChhhHHHHhhhhCC
Q 036086 199 IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIYFSESNSWSNLNCELP 277 (355)
Q Consensus 199 ~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 277 (355)
...+.+-++|+|++..-.....+.+...+.... ..+++|++|.... +... +.+....+.+.+++.++....+.+.+-
T Consensus 106 ~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~il~~n~~~~i~~~-i~sR~~~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 106 IFSKGFKLIILDEADAMTNAAQNALRRVIERYT-KNTRFCVLANYAHKLTPA-LLSQCTRFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHH-HHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCC-CCeEEEEEecCccccchh-HHhhceeEeccCCCHHHHHHHHHHHHH
Confidence 133457889999997555666677766665544 4566666664432 2222 212224688999999988877765431
Q ss_pred CCCCCcchHHHHHHHHHHhcCCCch
Q 036086 278 PSSQEAHRVEDLETGSAMDEEGVTS 302 (355)
Q Consensus 278 ~~~~~~~~~~~~~~~i~~~c~GlPl 302 (355)
...-. --+.....++..++|-+-
T Consensus 184 ~~~~~--i~~~~~~~i~~~s~G~~r 206 (340)
T 1sxj_C 184 HEKLK--LSPNAEKALIELSNGDMR 206 (340)
T ss_dssp TTTCC--BCHHHHHHHHHHHTTCHH
T ss_pred HcCCC--CCHHHHHHHHHHcCCCHH
Confidence 11110 112445667778888774
No 33
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.95 E-value=5.2e-05 Score=70.16 Aligned_cols=180 Identities=6% Similarity=0.025 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHhcCccccC---CCC--ceEEEEeCCCCCHHHHHH------
Q 036086 124 ESSVDSVKNALLRD--GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKS---RLP--FKVWYSVGKNLDFSTAVQ------ 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~---~F~--~~~wv~vs~~~~~~~i~~------ 190 (355)
+++.++|...|... ++..+.+-|+|++|+|||++++.|.+.-.-.. ... ..+.+....-.+...++.
T Consensus 26 e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L 105 (318)
T 3te6_A 26 VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAI 105 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHh
Confidence 56666666666544 55667789999999999999999988432111 111 123444333334333332
Q ss_pred ------------HHHHHHhhc--CCCCcEEEEEeCCCCCChhhHHHHHHhh--ccCCCCCcEEEEecCChh-----H---
Q 036086 191 ------------EIRNRRNEI--PSSKRLLFALDDVSHLNDDNLANLRLLV--SDMRLVGFYVLVTTHSTS-----V--- 246 (355)
Q Consensus 191 ------------~l~~~l~~~--l~~kr~LlVlDdvw~~~~~~~~~l~~~l--~~~~~~gs~IlvTTR~~~-----v--- 246 (355)
.+...+... -.+++++++||.+..-. .-+.+...+ +.......-||.++...+ +
T Consensus 106 ~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~ 183 (318)
T 3te6_A 106 SKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIM 183 (318)
T ss_dssp SCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTC
T ss_pred cCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchh
Confidence 122222221 14568999999997432 112222222 111101122333343321 1
Q ss_pred -hhhcccCCcccccCCCCChhhHHHHhhhhCC--CCC-----------------------------------CCcchHHH
Q 036086 247 -ATMMMQTVPEAEHLIYFSESNSWSNLNCELP--PSS-----------------------------------QEAHRVED 288 (355)
Q Consensus 247 -a~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af--~~~-----------------------------------~~~~~~~~ 288 (355)
... ++. ..+.+.|++.++-.+++.+++- ... -++..++.
T Consensus 184 v~SR-~~~--~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~ 260 (318)
T 3te6_A 184 PSLK-AHF--TEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQL 260 (318)
T ss_dssp HHHH-TTE--EEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHH
T ss_pred hhcc-CCc--eEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHH
Confidence 112 221 3689999999999998877641 110 02344666
Q ss_pred HHHHHHHhcCCCchHHHHHH
Q 036086 289 LETGSAMDEEGVTSLTQFLL 308 (355)
Q Consensus 289 ~~~~i~~~c~GlPla~~~~~ 308 (355)
+++.++...|-+-.|+..+.
T Consensus 261 ~A~~vA~~~GD~R~Al~ilr 280 (318)
T 3te6_A 261 IAKNVANVSGSTEKAFKICE 280 (318)
T ss_dssp HHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHHhhCChHHHHHHHHH
Confidence 67777766777777775554
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.94 E-value=9.6e-06 Score=74.40 Aligned_cols=132 Identities=11% Similarity=0.126 Sum_probs=73.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCC--CC--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKN--LD--FSTAVQEIRNRRNEIPSSKRLLFALDDVSHL- 215 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~--~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~- 215 (355)
..-+-|+|++|+|||+||+.+.+.-.........-++.++.. .. .......+...+... +..+|+||++..-
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~ 143 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLY 143 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhc
Confidence 446889999999999999877663211111111123333211 00 000000122222222 3459999999732
Q ss_pred --------ChhhHHHHHHhhccCCCCCcEEEEecCChhHhhh------cccCCcccccCCCCChhhHHHHhhhhC
Q 036086 216 --------NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATM------MMQTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 216 --------~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~------~~~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
.......+...+.... .+..||.||........ +.......+.+.+++.++-..++.+.+
T Consensus 144 ~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 144 RPDNERDYGQEAIEILLQVMENNR-DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp CCC---CCTHHHHHHHHHHHHHCT-TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHH
T ss_pred cCCCcccccHHHHHHHHHHHhcCC-CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHH
Confidence 4455566766666655 56778888765432110 000011578999999999999887764
No 35
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.94 E-value=6.6e-05 Score=69.77 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHhcC---CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcC
Q 036086 124 ESSVDSVKNALLRD---GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIP 200 (355)
Q Consensus 124 ~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l 200 (355)
+..++.+..++... ......+-|+|++|+|||+||+.+.+ .....| +.+..+....... +...+..
T Consensus 35 ~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~~~~~----~~~~~~~-- 103 (338)
T 3pfi_A 35 ESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIEKSGD----LAAILTN-- 103 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCCSHHH----HHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhccchhH----HHHHHHh--
Confidence 55666666666532 33445678999999999999999977 322222 2233222222222 2222222
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHHhhccCCC-----------------CCcEEEEecCCh-hHhhhcccCCcccccCCC
Q 036086 201 SSKRLLFALDDVSHLNDDNLANLRLLVSDMRL-----------------VGFYVLVTTHST-SVATMMMQTVPEAEHLIY 262 (355)
Q Consensus 201 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~-----------------~gs~IlvTTR~~-~va~~~~~~~~~~~~l~~ 262 (355)
..+..+|+||++..........+...+..... ++..+|.+|... .+...+.......+.+.+
T Consensus 104 ~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~ 183 (338)
T 3pfi_A 104 LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEF 183 (338)
T ss_dssp CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCC
T ss_pred ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCC
Confidence 24568999999986666666667666654320 113455555432 221110111115789999
Q ss_pred CChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCch
Q 036086 263 FSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTS 302 (355)
Q Consensus 263 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPl 302 (355)
++.++...++.+.+-... ..--.+....++..+.|.|-
T Consensus 184 ~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r 221 (338)
T 3pfi_A 184 YKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPR 221 (338)
T ss_dssp CCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHH
T ss_pred cCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHH
Confidence 999999998877642111 11123455667778899883
No 36
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.93 E-value=6.8e-06 Score=70.63 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCC--CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeC
Q 036086 126 SVDSVKNALLRDGN--TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVG 180 (355)
Q Consensus 126 ~~~~l~~~L~~~~~--~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 180 (355)
..+.+.+++..... ....+.|+|++|+||||||+.+++ .........+|++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhH
Confidence 34455555554321 226788999999999999999998 333333445566543
No 37
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=3.8e-05 Score=76.06 Aligned_cols=172 Identities=13% Similarity=0.082 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHhcC---------------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHH
Q 036086 124 ESSVDSVKNALLRD---------------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTA 188 (355)
Q Consensus 124 ~~~~~~l~~~L~~~---------------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 188 (355)
+..++++.+||... .+..+.+-|+|++|+||||||+.+.+.. .+ ..+.+..+.......+
T Consensus 45 ~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~~~~~~~ 119 (516)
T 1sxj_A 45 KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDVRSKTLL 119 (516)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCcchHHHH
Confidence 67778888888641 0134688999999999999999998732 11 1223444443333221
Q ss_pred HHHHHHH-----Hhhc---------CCCCcEEEEEeCCCCCC---hhhHHHHHHhhccCCCCCcEEEEecCChh---Hhh
Q 036086 189 VQEIRNR-----RNEI---------PSSKRLLFALDDVSHLN---DDNLANLRLLVSDMRLVGFYVLVTTHSTS---VAT 248 (355)
Q Consensus 189 ~~~l~~~-----l~~~---------l~~kr~LlVlDdvw~~~---~~~~~~l~~~l~~~~~~gs~IlvTTR~~~---va~ 248 (355)
...+... +... ..+++.+|++|++..-. ...+..+...+.... ..||+++.... +..
T Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~---~~iIli~~~~~~~~l~~ 196 (516)
T 1sxj_A 120 NAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTS---TPLILICNERNLPKMRP 196 (516)
T ss_dssp HHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCS---SCEEEEESCTTSSTTGG
T ss_pred HHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcC---CCEEEEEcCCCCccchh
Confidence 1111000 1111 13567899999996432 223445554444322 33555544322 222
Q ss_pred hcccCCcccccCCCCChhhHHHHhhhhCCCCC-CCcchHHHHHHHHHHhcCC-CchHHHHHH
Q 036086 249 MMMQTVPEAEHLIYFSESNSWSNLNCELPPSS-QEAHRVEDLETGSAMDEEG-VTSLTQFLL 308 (355)
Q Consensus 249 ~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~-~~~~~~~~~~~~i~~~c~G-lPla~~~~~ 308 (355)
.......+.+.+++.++...++...+.... ...+ +....|+..++| ++.++..+.
T Consensus 197 --l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 197 --FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp --GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred --hHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 222225789999999999888876543211 1111 234556778888 556665544
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.83 E-value=0.00011 Score=69.08 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=54.7
Q ss_pred cEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecC-Ch------------hHhhhcccCCcccccCCCCChhhHHH
Q 036086 204 RLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTH-ST------------SVATMMMQTVPEAEHLIYFSESNSWS 270 (355)
Q Consensus 204 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR-~~------------~va~~~~~~~~~~~~l~~L~~~~s~~ 270 (355)
+.+|+||++...+....+.+...+.... .. .++++|. .- .+...+.... ..+.+.+++.++...
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~-~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~-~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDM-AP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL-LIVSTTPYSEKDTKQ 266 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTT-CC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE-EEEEECCCCHHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcC-CC-eeeeecccceeeeeccCCCCcccCCHHHHhhc-cEEEecCCCHHHHHH
Confidence 4599999998666677777777665544 33 3444432 10 1111101111 457899999999999
Q ss_pred HhhhhCCCCCCCcchHHHHHHHHHHhcC-CCch
Q 036086 271 NLNCELPPSSQEAHRVEDLETGSAMDEE-GVTS 302 (355)
Q Consensus 271 Lf~~~af~~~~~~~~~~~~~~~i~~~c~-GlPl 302 (355)
++.+.+-.... .--.+....++..+. |-|-
T Consensus 267 il~~~~~~~~~--~~~~~~l~~l~~~~~~G~~r 297 (368)
T 3uk6_A 267 ILRIRCEEEDV--EMSEDAYTVLTRIGLETSLR 297 (368)
T ss_dssp HHHHHHHHTTC--CBCHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHhcCCCHH
Confidence 99876422111 112345566777776 6663
No 39
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.81 E-value=0.00015 Score=66.97 Aligned_cols=176 Identities=10% Similarity=0.035 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhc--CC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEI--PS 201 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~--l~ 201 (355)
+..++.+.+++... ....++-+.|+.|+||||+|+.+.+. .. ...+.++.+. ..... ++......... ..
T Consensus 32 ~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~~~~-i~~~~~~~~~~~~~~ 103 (324)
T 3u61_B 32 AFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CKIDF-VRGPLTNFASAASFD 103 (324)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CCHHH-HHTHHHHHHHBCCCS
T ss_pred HHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cCHHH-HHHHHHHHHhhcccC
Confidence 56677777777742 33457788899999999999999873 21 1123444433 33332 22222222222 23
Q ss_pred CCcEEEEEeCCCCCC-hhhHHHHHHhhccCCCCCcEEEEecCChh-HhhhcccCCcccccCCCCChhhHHHH-------h
Q 036086 202 SKRLLFALDDVSHLN-DDNLANLRLLVSDMRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIYFSESNSWSN-------L 272 (355)
Q Consensus 202 ~kr~LlVlDdvw~~~-~~~~~~l~~~l~~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~L~~~~s~~L-------f 272 (355)
+++.++++|++..-. ....+.+...+.... .+.++|+||.... +-.. +......+.+.+++.++-.++ +
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~~l~~~-l~sR~~~i~~~~~~~~e~~~il~~~~~~l 181 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYS-SNCSIIITANNIDGIIKP-LQSRCRVITFGQPTDEDKIEMMKQMIRRL 181 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGGGSCTT-HHHHSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCccccCHH-HHhhCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 578899999998554 556666665554433 4567777776543 2111 111115789999998874332 2
Q ss_pred hhhCCCCCCCcchHHHHHHHHHHhcCCCc-hHHHHHHhh
Q 036086 273 NCELPPSSQEAHRVEDLETGSAMDEEGVT-SLTQFLLDI 310 (355)
Q Consensus 273 ~~~af~~~~~~~~~~~~~~~i~~~c~GlP-la~~~~~~~ 310 (355)
.+.+-.. ...-...+....++..++|-+ -++..+...
T Consensus 182 ~~~~~~~-~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 182 TEICKHE-GIAIADMKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp HHHHHHH-TCCBSCHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred HHHHHHc-CCCCCcHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 2211111 100001245566777787765 344444433
No 40
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.80 E-value=7e-05 Score=60.91 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=53.1
Q ss_pred EEEEcCCCccHHHHHHHHhcCccc-cCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhhHHH
Q 036086 144 IHIVGVSGTDETAIAHRVFTDDDV-KSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLNDDNLAN 222 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~ 222 (355)
|-|+|..|+|||++|+.+++...- ...| + +..+...+... ....+... ..-.|+||++..-.......
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~~~----~~~~~~~a---~~g~l~ldei~~l~~~~q~~ 95 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNAPQ----LNDFIALA---QGGTLVLSHPEHLTREQQYH 95 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTSSC----HHHHHHHH---TTSCEEEECGGGSCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcchh----hhcHHHHc---CCcEEEEcChHHCCHHHHHH
Confidence 679999999999999999874211 2222 2 55443322111 11111111 23578999998766666677
Q ss_pred HHHhhccCCCCCcEEEEecCC
Q 036086 223 LRLLVSDMRLVGFYVLVTTHS 243 (355)
Q Consensus 223 l~~~l~~~~~~gs~IlvTTR~ 243 (355)
+...+.... ...+||.||..
T Consensus 96 Ll~~l~~~~-~~~~~I~~t~~ 115 (145)
T 3n70_A 96 LVQLQSQEH-RPFRLIGIGDT 115 (145)
T ss_dssp HHHHHHSSS-CSSCEEEEESS
T ss_pred HHHHHhhcC-CCEEEEEECCc
Confidence 777665444 45677777764
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.80 E-value=3.8e-05 Score=64.29 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+...+.+.+.+.. .....+.|+|++|+||||||+.+.+
T Consensus 28 ~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 28 DTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp HHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHH
Confidence 6677888887764 2344568999999999999999876
No 42
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.79 E-value=2e-05 Score=64.68 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=49.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhhH
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLNDDNL 220 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~ 220 (355)
-..+.|+|..|+|||||++.+++.... ..+ ..+++....-... .. ..+.-++||||+.......-
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~~~~~------------~~-~~~~~lLilDE~~~~~~~~~ 100 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAASMPLT------------DA-AFEAEYLAVDQVEKLGNEEQ 100 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTTSCCC------------GG-GGGCSEEEEESTTCCCSHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHHhhHH------------HH-HhCCCEEEEeCccccChHHH
Confidence 457899999999999999999873321 111 1456654432221 11 12456889999975433222
Q ss_pred HHHHHhhccC-CCCCc-EEEEecCC
Q 036086 221 ANLRLLVSDM-RLVGF-YVLVTTHS 243 (355)
Q Consensus 221 ~~l~~~l~~~-~~~gs-~IlvTTR~ 243 (355)
+.+...+... . .|. +||+||+.
T Consensus 101 ~~l~~li~~~~~-~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRN-SGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHH-HTCCEEEEEESS
T ss_pred HHHHHHHHHHHH-cCCcEEEEECCC
Confidence 3333332211 1 233 48888873
No 43
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=0.0002 Score=65.95 Aligned_cols=142 Identities=7% Similarity=0.007 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc-ccc-CCCCceEEEEeCC-CCCHHHHHHHHHHHHhhc-CCC
Q 036086 127 VDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD-DVK-SRLPFKVWYSVGK-NLDFSTAVQEIRNRRNEI-PSS 202 (355)
Q Consensus 127 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~-~~~-~~F~~~~wv~vs~-~~~~~~i~~~l~~~l~~~-l~~ 202 (355)
.+.|.+.+.. +..+..-++|+.|+||||+|..+.+.. ... .|.+ ..++..++ ...+..+ +++.+..... ..+
T Consensus 6 ~~~L~~~i~~--~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p~~~ 81 (305)
T 2gno_A 6 LETLKRIIEK--SEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSPELY 81 (305)
T ss_dssp HHHHHHHHHT--CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCCSSS
T ss_pred HHHHHHHHHC--CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhccccC
Confidence 3445555543 236788999999999999999987621 111 2333 34555443 3443333 3444444433 245
Q ss_pred CcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCCh-hHhhhcccCCcccccCCCCChhhHHHHhhhhC
Q 036086 203 KRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHST-SVATMMMQTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 203 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
++-++|+|++..-+....+.+...+..-. ..+.+|++|.+. .+... +.+. .+++.++++++....+.+..
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~-~~t~fIl~t~~~~kl~~t-I~SR--~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPP-EYAVIVLNTRRWHYLLPT-IKSR--VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCC-TTEEEEEEESCGGGSCHH-HHTT--SEEEECCCCHHHHHHHHHHH
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCC-CCeEEEEEECChHhChHH-HHce--eEeCCCCCHHHHHHHHHHHh
Confidence 67889999998666777888888776555 567766665443 34444 4443 89999999999988887664
No 44
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.57 E-value=0.00064 Score=62.82 Aligned_cols=167 Identities=14% Similarity=0.126 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHhc---------C-CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC---C-C-CHHHH
Q 036086 124 ESSVDSVKNALLR---------D-GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK---N-L-DFSTA 188 (355)
Q Consensus 124 ~~~~~~l~~~L~~---------~-~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~-~-~~~~i 188 (355)
+..++.|.+.+.. . ....+-+-++|++|+|||+||+.+.+. ...+| +.++.+. . . .....
T Consensus 24 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~~~~g~~~~~ 98 (322)
T 3eie_A 24 EGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSSDLVSKWMGESEKL 98 (322)
T ss_dssp HHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHHHHHTTTGGGHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchHHHhhcccchHHHH
Confidence 5566666665521 1 222456889999999999999999883 32222 2222211 0 0 11111
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCC-----------hhhHHHHHHhhc---cCCCCCcEEEEecCChhHh-hhcccC
Q 036086 189 VQEIRNRRNEIPSSKRLLFALDDVSHLN-----------DDNLANLRLLVS---DMRLVGFYVLVTTHSTSVA-TMMMQT 253 (355)
Q Consensus 189 ~~~l~~~l~~~l~~kr~LlVlDdvw~~~-----------~~~~~~l~~~l~---~~~~~gs~IlvTTR~~~va-~~~~~~ 253 (355)
++.+ +...-..+..+|+||++..-. ......+...+. ... .+..||.||...... ..+...
T Consensus 99 ~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~v~vi~atn~~~~ld~al~~R 174 (322)
T 3eie_A 99 VKQL---FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS-QGVLVLGATNIPWQLDSAIRRR 174 (322)
T ss_dssp HHHH---HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC-CCEEEEEEESCGGGSCHHHHHH
T ss_pred HHHH---HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC-CceEEEEecCChhhCCHHHHcc
Confidence 1122 222223467899999996311 112334443333 223 455566677653221 110111
Q ss_pred CcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 254 VPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 254 ~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
-...+.+...+.++-.++|...+-.....- -......++..+.|..
T Consensus 175 f~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~s 220 (322)
T 3eie_A 175 FERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYS 220 (322)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCC
T ss_pred cCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCC
Confidence 114567888888988999988753322111 1223456678888753
No 45
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.53 E-value=0.00013 Score=59.08 Aligned_cols=85 Identities=8% Similarity=0.167 Sum_probs=50.3
Q ss_pred EEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhhHHHH
Q 036086 144 IHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLNDDNLANL 223 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l 223 (355)
|-|+|..|+|||++|+.+++... -++.+.-..-..... ..+.+.. +.-.++||++..........+
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~~----~~~~~~a--~~~~l~lDei~~l~~~~q~~L 95 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDMP----MELLQKA--EGGVLYVGDIAQYSRNIQTGI 95 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHCH----HHHHHHT--TTSEEEEEECTTCCHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHhh----hhHHHhC--CCCeEEEeChHHCCHHHHHHH
Confidence 66899999999999999987422 233333221111111 1111111 235789999987666666666
Q ss_pred HHhhccCCCCCcEEEEecC
Q 036086 224 RLLVSDMRLVGFYVLVTTH 242 (355)
Q Consensus 224 ~~~l~~~~~~gs~IlvTTR 242 (355)
...+......+.+||.||.
T Consensus 96 l~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 96 TFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp HHHHHHHTTTTCEEEEEEE
T ss_pred HHHHHhCCCCCEEEEEecC
Confidence 6665543214567777765
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.47 E-value=0.0012 Score=60.35 Aligned_cols=147 Identities=11% Similarity=0.188 Sum_probs=79.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH--------HHHHHHhhcCCCCcEEEEEeC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ--------EIRNRRNEIPSSKRLLFALDD 211 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~--------~l~~~l~~~l~~kr~LlVlDd 211 (355)
..+.+.++|++|+||||||+.+.+. .... ++.++ ...+.. .+...+.......+.+|+||+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDE 116 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GPELLTMWFGESEANVREIFDKARQAAPCVLFFDE 116 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECS
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3456889999999999999999983 3222 23332 112211 122222222234679999999
Q ss_pred CCCC--------------ChhhHHHHHHhhcc--CCCCCcEEEEecCChh-Hhhhccc--CCcccccCCCCChhhHHHHh
Q 036086 212 VSHL--------------NDDNLANLRLLVSD--MRLVGFYVLVTTHSTS-VATMMMQ--TVPEAEHLIYFSESNSWSNL 272 (355)
Q Consensus 212 vw~~--------------~~~~~~~l~~~l~~--~~~~gs~IlvTTR~~~-va~~~~~--~~~~~~~l~~L~~~~s~~Lf 272 (355)
+..- .......+...+.. .. .+..||.||...+ +-..+.. .-...+.+.+.+.++-.++|
T Consensus 117 id~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il 195 (301)
T 3cf0_A 117 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAIL 195 (301)
T ss_dssp TTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT-SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHH
T ss_pred hHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC-CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHH
Confidence 8620 01113344444432 12 3456777776543 2121022 12246788888888888888
Q ss_pred hhhCCCCC-CCcchHHHHHHHHHHhcCCCch
Q 036086 273 NCELPPSS-QEAHRVEDLETGSAMDEEGVTS 302 (355)
Q Consensus 273 ~~~af~~~-~~~~~~~~~~~~i~~~c~GlPl 302 (355)
....-... .....+.. ++..+.|.|-
T Consensus 196 ~~~l~~~~~~~~~~~~~----la~~~~g~sg 222 (301)
T 3cf0_A 196 KANLRKSPVAKDVDLEF----LAKMTNGFSG 222 (301)
T ss_dssp HHHHTTSCBCSSCCHHH----HHHTCSSCCH
T ss_pred HHHHccCCCCccchHHH----HHHHcCCCCH
Confidence 76542211 12233333 4456778773
No 47
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.41 E-value=0.00084 Score=63.01 Aligned_cols=149 Identities=14% Similarity=0.104 Sum_probs=75.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC---CC--CHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK---NL--DFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLN 216 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~--~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~ 216 (355)
+-|-++|+.|+|||+||+.+.+. ....| +.+..+. .+ .....++.+... .-..+..+|+||++....
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~~l~~~~~g~~~~~~~~~f~~---a~~~~~~vl~iDEid~l~ 156 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSSDLVSKWMGESEKLVKQLFAM---ARENKPSIIFIDQVDALT 156 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHHHHHSCC---CHHHHHHHHHH---HHHTSSEEEEEECGGGGT
T ss_pred ceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHHHHhhhhcchHHHHHHHHHHH---HHHcCCeEEEEechHhhc
Confidence 45778999999999999999883 32222 1222110 00 011111122221 223467899999997321
Q ss_pred h-----------hhHHHHHHhhcc---CCCCCcEEEEecCChh-HhhhcccCCcccccCCCCChhhHHHHhhhhCCCCCC
Q 036086 217 D-----------DNLANLRLLVSD---MRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQ 281 (355)
Q Consensus 217 ~-----------~~~~~l~~~l~~---~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~ 281 (355)
. .....+...+.. .. .+..||.||.... +-..+...-...+.+.+.+.++-..+|....-....
T Consensus 157 ~~r~~~~~~~~~~~~~~ll~~l~~~~~~~-~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~ 235 (355)
T 2qp9_X 157 GTRGEGESEASRRIKTELLVQMNGVGNDS-QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS 235 (355)
T ss_dssp C------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB
T ss_pred ccCCCCcchHHHHHHHHHHHHhhcccccC-CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC
Confidence 1 112333333321 12 3455666665442 111101111145778888888888888876532211
Q ss_pred CcchHHHHHHHHHHhcCCCc
Q 036086 282 EAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 282 ~~~~~~~~~~~i~~~c~GlP 301 (355)
.-. ......++..+.|..
T Consensus 236 ~~~--~~~l~~la~~t~G~s 253 (355)
T 2qp9_X 236 VLT--KEDYRTLGAMTEGYS 253 (355)
T ss_dssp CCC--HHHHHHHHHHTTTCC
T ss_pred CCC--HHHHHHHHHHcCCCC
Confidence 101 233456778888854
No 48
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.40 E-value=0.00089 Score=59.82 Aligned_cols=115 Identities=13% Similarity=0.015 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH--------HH
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRN--------RR 196 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~--------~l 196 (355)
....++.+.+..-.....-+-|+|..|+|||+||+.+.+...-. .. ..+.++.+.- ....+...+.. ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-~~-~~~~v~~~~~-~~~~~~~~l~g~~~~~~~g~~ 89 (265)
T 2bjv_A 13 NSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-QG-PFISLNCAAL-NENLLDSELFGHEAGAFTGAQ 89 (265)
T ss_dssp HHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-TS-CEEEEEGGGS-CHHHHHHHHHCCC--------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-CC-CeEEEecCCC-ChhHHHHHhcCCccccccccc
Confidence 34444444443211112346799999999999999998742111 11 1233443332 11111111100 00
Q ss_pred h---hcC-CCCcEEEEEeCCCCCChhhHHHHHHhhccC-----------CCCCcEEEEecCC
Q 036086 197 N---EIP-SSKRLLFALDDVSHLNDDNLANLRLLVSDM-----------RLVGFYVLVTTHS 243 (355)
Q Consensus 197 ~---~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~~gs~IlvTTR~ 243 (355)
. ..+ ....-+|+||++..........+...+..+ . .+.+||.||..
T Consensus 90 ~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~-~~~~iI~atn~ 150 (265)
T 2bjv_A 90 KRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQ-VNVRLVCATNA 150 (265)
T ss_dssp -CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEE-CCCEEEEEESS
T ss_pred ccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCccccc-CCeEEEEecCc
Confidence 0 000 012458999999866666666666655432 1 24577777765
No 49
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.38 E-value=0.001 Score=64.39 Aligned_cols=169 Identities=15% Similarity=0.134 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHhc----C------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH---
Q 036086 124 ESSVDSVKNALLR----D------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ--- 190 (355)
Q Consensus 124 ~~~~~~l~~~L~~----~------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~--- 190 (355)
+..++.|.+.+.. . ....+-+-++|++|+|||+||+.+.+. . ...-++.++...-......
T Consensus 140 ~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~l~~~~~g~~~ 213 (444)
T 2zan_A 140 EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSDLVSKWLGESE 213 (444)
T ss_dssp HHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC---------CC
T ss_pred HHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHHHHhhhcchHH
Confidence 5666666665521 0 123456889999999999999999873 2 1122333332211111000
Q ss_pred -HHHHHHhhcCCCCcEEEEEeCCCCCC-------h----hhHHHHHHhhcc---CCCCCcEEEEecCChhH-hhhcccCC
Q 036086 191 -EIRNRRNEIPSSKRLLFALDDVSHLN-------D----DNLANLRLLVSD---MRLVGFYVLVTTHSTSV-ATMMMQTV 254 (355)
Q Consensus 191 -~l~~~l~~~l~~kr~LlVlDdvw~~~-------~----~~~~~l~~~l~~---~~~~gs~IlvTTR~~~v-a~~~~~~~ 254 (355)
.+...+...-..++.+|+||++..-. . .....+...+.. .. .+..||.||..... -..+....
T Consensus 214 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~-~~v~vI~atn~~~~ld~al~rRf 292 (444)
T 2zan_A 214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN-DGILVLGATNIPWVLDSAIRRRF 292 (444)
T ss_dssp CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC-SSCEEEEEESCGGGSCHHHHTTC
T ss_pred HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC-CCEEEEecCCCccccCHHHHhhc
Confidence 11111111113467899999997320 1 112223333322 12 34556667654421 11101111
Q ss_pred cccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc
Q 036086 255 PEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 255 ~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 301 (355)
...+.+...+.++-..+|....-..... --......++..+.|..
T Consensus 293 ~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 293 EKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYS 337 (444)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCC
T ss_pred ceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCC
Confidence 1356777778888888887764322110 01233456778888854
No 50
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.36 E-value=0.001 Score=62.38 Aligned_cols=172 Identities=9% Similarity=0.027 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHhc----C------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC-----HHHH
Q 036086 124 ESSVDSVKNALLR----D------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD-----FSTA 188 (355)
Q Consensus 124 ~~~~~~l~~~L~~----~------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-----~~~i 188 (355)
+..++.|.+.+.. . ....+-+.|+|+.|+|||+||+.+.+. .... .+.++.+.-+. ....
T Consensus 90 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~~~~g~~~~~ 164 (357)
T 3d8b_A 90 EFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTSKWVGEGEKM 164 (357)
T ss_dssp HHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCSSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhccccchHHHH
Confidence 5555666555532 1 123456889999999999999999873 2211 12344332211 1111
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCC-----------ChhhHHHHHHhhccC----CCCCcEEEEecCChh-Hhhhccc
Q 036086 189 VQEIRNRRNEIPSSKRLLFALDDVSHL-----------NDDNLANLRLLVSDM----RLVGFYVLVTTHSTS-VATMMMQ 252 (355)
Q Consensus 189 ~~~l~~~l~~~l~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l~~~----~~~gs~IlvTTR~~~-va~~~~~ 252 (355)
.+.+.. ..-..++.+|+||++..- ....+..+...+... . .+..||.||.... +...+..
T Consensus 165 ~~~~~~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~-~~v~vI~atn~~~~l~~~l~~ 240 (357)
T 3d8b_A 165 VRALFA---VARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE-DRILVVGATNRPQEIDEAARR 240 (357)
T ss_dssp HHHHHH---HHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC-CCEEEEEEESCGGGBCHHHHT
T ss_pred HHHHHH---HHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC-CCEEEEEecCChhhCCHHHHh
Confidence 212222 222346789999998410 011233343333321 1 2345555665432 2111011
Q ss_pred CCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCc-hHHHH
Q 036086 253 TVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVT-SLTQF 306 (355)
Q Consensus 253 ~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP-la~~~ 306 (355)
.....+.+...+.++-..++...+-..... -.......+++.+.|.. ..+..
T Consensus 241 Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 241 RLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHH
T ss_pred hCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHH
Confidence 111356788888888888877654211111 11244566778888854 44433
No 51
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.34 E-value=0.00083 Score=62.17 Aligned_cols=151 Identities=14% Similarity=0.135 Sum_probs=77.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-----CHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-----DFSTAVQEIRNRRNEIPSSKRLLFALDDVSHL 215 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~ 215 (355)
.+-+-++|++|+|||+||+.+.+... ...| +.++.+.-. .....++.+..... ..++.+|++|++..-
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~-~~~~---~~i~~~~l~~~~~g~~~~~~~~lf~~a~---~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSISSSDLVSKWLGESEKLVKNLFQLAR---ENKPSIIFIDEIDSL 117 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT-SCEE---EEEECCSSCCSSCCSCHHHHHHHHHHHH---HTSSEEEEEETTTGG
T ss_pred CceEEEECCCCccHHHHHHHHHHHcC-CCcE---EEEEhHHHHhhhhhHHHHHHHHHHHHHH---hcCCcEEEeecHHHh
Confidence 35688999999999999999987320 1111 223322211 11222222222222 346789999999631
Q ss_pred -------Chh----hHHHHHHhhcc---CCCCCcEEEEecCChh-HhhhcccCCcccccCCCCChhhHHHHhhhhCCCCC
Q 036086 216 -------NDD----NLANLRLLVSD---MRLVGFYVLVTTHSTS-VATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSS 280 (355)
Q Consensus 216 -------~~~----~~~~l~~~l~~---~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~ 280 (355)
... ....+...+.. .. .+..||.||.... +-..+...-...+.+...+.++-..+|....-...
T Consensus 118 ~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~-~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~ 196 (322)
T 1xwi_A 118 CGSRSENESEAARRIKTEFLVQMQGVGVDN-DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ 196 (322)
T ss_dssp GCCSSSCCTTHHHHHHHHHHHHHHCSSSCC-TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC
T ss_pred ccccccccchHHHHHHHHHHHHHhcccccC-CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC
Confidence 011 12223333322 12 3445555664432 11110111114577888888888888877642221
Q ss_pred CCcchHHHHHHHHHHhcCCCc
Q 036086 281 QEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 281 ~~~~~~~~~~~~i~~~c~GlP 301 (355)
..- .......+++.+.|..
T Consensus 197 ~~l--~~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 197 NSL--TEADFRELGRKTDGYS 215 (322)
T ss_dssp BCC--CHHHHHHHHHTCTTCC
T ss_pred CCC--CHHHHHHHHHHcCCCC
Confidence 110 1233456778888875
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.29 E-value=0.00069 Score=61.82 Aligned_cols=83 Identities=10% Similarity=0.171 Sum_probs=48.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC---HHHHHH------------HHHHHHhhcCCCCcE
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD---FSTAVQ------------EIRNRRNEIPSSKRL 205 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~---~~~i~~------------~l~~~l~~~l~~kr~ 205 (355)
...+.++|+.|+||||+|+.+.+. ....-...+.+..+.-.+ ...+.. .+...+.. ....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---~~~~ 121 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYS 121 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHH---CSSE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHh---CCCe
Confidence 457899999999999999998873 211111223444332211 111110 12222222 2346
Q ss_pred EEEEeCCCCCChhhHHHHHHhhc
Q 036086 206 LFALDDVSHLNDDNLANLRLLVS 228 (355)
Q Consensus 206 LlVlDdvw~~~~~~~~~l~~~l~ 228 (355)
+++||++...+......+...+.
T Consensus 122 vl~lDEi~~l~~~~~~~Ll~~le 144 (311)
T 4fcw_A 122 VILFDAIEKAHPDVFNILLQMLD 144 (311)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHH
T ss_pred EEEEeChhhcCHHHHHHHHHHHh
Confidence 99999998666777777766664
No 53
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.25 E-value=0.00038 Score=64.08 Aligned_cols=36 Identities=6% Similarity=0.084 Sum_probs=25.8
Q ss_pred HHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 129 SVKNALLRD-GNTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 129 ~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+.+++... .....-+-++|+.|+|||+||..+++.
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344555432 212456789999999999999999883
No 54
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.23 E-value=0.003 Score=59.92 Aligned_cols=172 Identities=10% Similarity=0.061 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHhcC----------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC-----HHHH
Q 036086 124 ESSVDSVKNALLRD----------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD-----FSTA 188 (355)
Q Consensus 124 ~~~~~~l~~~L~~~----------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-----~~~i 188 (355)
+..++.|..++... ....+-+-|+|..|+|||+||+.+.+. ....| +.++.+.-.. ....
T Consensus 121 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~~~~g~~~~~ 195 (389)
T 3vfd_A 121 DLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNATF---FNISAASLTSKYVGEGEKL 195 (389)
T ss_dssp HHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCEE---EEECSCCC-------CHHH
T ss_pred HHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCcE---EEeeHHHhhccccchHHHH
Confidence 55666666665211 122456889999999999999999873 22111 2232222111 1111
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCC-----------ChhhHHHHHHhhcc---C-CCCCcEEEEecCChh-Hhhhccc
Q 036086 189 VQEIRNRRNEIPSSKRLLFALDDVSHL-----------NDDNLANLRLLVSD---M-RLVGFYVLVTTHSTS-VATMMMQ 252 (355)
Q Consensus 189 ~~~l~~~l~~~l~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l~~---~-~~~gs~IlvTTR~~~-va~~~~~ 252 (355)
+..+..... .....+|+||++..- .......+...+.. . . ....||.||.... +-..+..
T Consensus 196 ~~~~~~~a~---~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~~v~vI~atn~~~~l~~~l~~ 271 (389)
T 3vfd_A 196 VRALFAVAR---ELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD-DRVLVMGATNRPQELDEAVLR 271 (389)
T ss_dssp HHHHHHHHH---HSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------CEEEEEEESCGGGCCHHHHT
T ss_pred HHHHHHHHH---hcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC-CCEEEEEecCCchhcCHHHHc
Confidence 112222222 235679999999521 11112233322221 1 1 2344555665432 2111011
Q ss_pred CCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCCCch-HHHH
Q 036086 253 TVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLETGSAMDEEGVTS-LTQF 306 (355)
Q Consensus 253 ~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPl-a~~~ 306 (355)
.....+.+...+.++-..++...+-..... -.......++..+.|..- ++..
T Consensus 272 R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~ 324 (389)
T 3vfd_A 272 RFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTA 324 (389)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHH
Confidence 111357788889899888887765322111 112345677788888664 4433
No 55
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.21 E-value=0.0012 Score=56.75 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=44.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH----------------------------HHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ----------------------------EIR 193 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~----------------------------~l~ 193 (355)
.++.|+|.+|+|||||+..+.. . .=...+|++....++...+.. ...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 4899999999999999999876 1 113456777665444443322 123
Q ss_pred HHHhhcCCCCcEEEEEeCCCC
Q 036086 194 NRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 194 ~~l~~~l~~kr~LlVlDdvw~ 214 (355)
..++..+..+.-+||+|.+-.
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHhhcCCCEEEEcCcHH
Confidence 333344444577999999863
No 56
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.19 E-value=0.00096 Score=69.99 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc---cccCCC-Cce-EEEEeCCCC-------CHHHHHHH
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD---DVKSRL-PFK-VWYSVGKNL-------DFSTAVQE 191 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~---~~~~~F-~~~-~wv~vs~~~-------~~~~i~~~ 191 (355)
+.+.+++++.|... ..+-+.++|.+|+||||||+.+.+.. .+.... +.. +++..+.-. +....++.
T Consensus 176 ~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~ 253 (854)
T 1qvr_A 176 DEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 253 (854)
T ss_dssp HHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHH
Confidence 78888888888753 23346789999999999999988732 111111 122 233322211 11111222
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCC--------hhhHHHHHHhhccCCCCCcEEEEecCChhH-----hhhcccCCcccc
Q 036086 192 IRNRRNEIPSSKRLLFALDDVSHLN--------DDNLANLRLLVSDMRLVGFYVLVTTHSTSV-----ATMMMQTVPEAE 258 (355)
Q Consensus 192 l~~~l~~~l~~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~~gs~IlvTTR~~~v-----a~~~~~~~~~~~ 258 (355)
+...+.. .+++.+|++|++..-. .+..+.+...+..+ +-.+|.+|..... ... +...-..+
T Consensus 254 ~~~~~~~--~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~---~i~~I~at~~~~~~~~~~d~a-L~rRf~~i 327 (854)
T 1qvr_A 254 VIQEVVQ--SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG---ELRLIGATTLDEYREIEKDPA-LERRFQPV 327 (854)
T ss_dssp HHHHHHT--TCSSEEEEECCC-------------------HHHHHTT---CCCEEEEECHHHHHHHTTCTT-TCSCCCCE
T ss_pred HHHHHHh--cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC---CeEEEEecCchHHhhhccCHH-HHhCCceE
Confidence 2222222 2467999999997321 11122344444332 2345555543322 111 11111468
Q ss_pred cCCCCChhhHHHHhhh
Q 036086 259 HLIYFSESNSWSNLNC 274 (355)
Q Consensus 259 ~l~~L~~~~s~~Lf~~ 274 (355)
.+.+++.++...++..
T Consensus 328 ~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 328 YVDEPTVEETISILRG 343 (854)
T ss_dssp EECCCCHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHh
Confidence 8999999999888864
No 57
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.18 E-value=0.0032 Score=58.42 Aligned_cols=150 Identities=12% Similarity=0.099 Sum_probs=80.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhh
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHLNDDN 219 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~~~~ 219 (355)
....+.++|+.|+||||||+.+.+. ....|. ..+-+-..+..++ ...+.. + .++.++++|++..-....
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~~~~l----~~~~~~-~-~~~~v~~iDE~~~l~~~~ 118 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVKQGDM----AAILTS-L-ERGDVLFIDEIHRLNKAV 118 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCSHHHH----HHHHHH-C-CTTCEEEEETGGGCCHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcCHHHH----HHHHHH-c-cCCCEEEEcchhhcCHHH
Confidence 4467899999999999999999873 322211 1111111122222 111111 2 234578889986444444
Q ss_pred HHHHHHhhccCC-------CC----------CcEE-EEecCChhHhhhcccCC-cccccCCCCChhhHHHHhhhhCCCCC
Q 036086 220 LANLRLLVSDMR-------LV----------GFYV-LVTTHSTSVATMMMQTV-PEAEHLIYFSESNSWSNLNCELPPSS 280 (355)
Q Consensus 220 ~~~l~~~l~~~~-------~~----------gs~I-lvTTR~~~va~~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~ 280 (355)
.+.+...+.... +. .-.+ -.||+...+... +... ...+.+++.+.++-.+++.+.+-...
T Consensus 119 ~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~-l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 119 EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSP-LRSRFGIILELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp HHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHH-HHTTCSEEEECCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHH-HHHhcCceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 555543332211 00 0111 235554433322 2111 12578999999999999987642111
Q ss_pred CCcchHHHHHHHHHHhcCCCchH
Q 036086 281 QEAHRVEDLETGSAMDEEGVTSL 303 (355)
Q Consensus 281 ~~~~~~~~~~~~i~~~c~GlPla 303 (355)
. ..-.+.+..|+..+.|-|-.
T Consensus 198 ~--~~~~~~~~~ia~~~~G~~R~ 218 (334)
T 1in4_A 198 V--EIEDAAAEMIAKRSRGTPRI 218 (334)
T ss_dssp C--CBCHHHHHHHHHTSTTCHHH
T ss_pred C--CcCHHHHHHHHHhcCCChHH
Confidence 1 12235677888999999944
No 58
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.16 E-value=0.0072 Score=54.66 Aligned_cols=148 Identities=14% Similarity=0.071 Sum_probs=75.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-----CHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-----DFSTAVQEIRNRRNEIPSSKRLLFALDDVSHL 215 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~ 215 (355)
..-+.|+|++|+||||||+.+.+. ....| +.++.+.-. ......+.+..... ..++.+|+||++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~--~~~~~---~~i~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE--CSATF---LNISAASLTSKYVGDGEKLVRALFAVAR---HMQPSIIFIDEVDSL 125 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH--TTCEE---EEEESTTTSSSSCSCHHHHHHHHHHHHH---HTCSEEEEEETGGGT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEeeHHHHhhcccchHHHHHHHHHHHHH---HcCCcEEEeccHHHh
Confidence 457889999999999999999873 22111 233333211 12222222222222 346789999998531
Q ss_pred -----------ChhhHHHHHHhh---ccCC-CCCcEEEEecCChh-----HhhhcccCCcccccCCCCChhhHHHHhhhh
Q 036086 216 -----------NDDNLANLRLLV---SDMR-LVGFYVLVTTHSTS-----VATMMMQTVPEAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 216 -----------~~~~~~~l~~~l---~~~~-~~gs~IlvTTR~~~-----va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~ 275 (355)
.......+...+ +... +.+..||.||.... +... +. ..+.+...+.++-..++...
T Consensus 126 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R-~~---~~i~~~~p~~~~r~~il~~~ 201 (297)
T 3b9p_A 126 LSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR-FT---KRVYVSLPDEQTRELLLNRL 201 (297)
T ss_dssp SBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHH-CC---EEEECCCCCHHHHHHHHHHH
T ss_pred ccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhh-CC---eEEEeCCcCHHHHHHHHHHH
Confidence 011112232222 2211 02345666666542 1222 21 35667777777777777655
Q ss_pred CCCCCCCcchHHHHHHHHHHhcCCCch
Q 036086 276 LPPSSQEAHRVEDLETGSAMDEEGVTS 302 (355)
Q Consensus 276 af~~~~~~~~~~~~~~~i~~~c~GlPl 302 (355)
+-..... --......++..+.|.+-
T Consensus 202 ~~~~~~~--~~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 202 LQKQGSP--LDTEALRRLAKITDGYSG 226 (297)
T ss_dssp HGGGSCC--SCHHHHHHHHHHTTTCCH
T ss_pred HHhcCCC--CCHHHHHHHHHHcCCCCH
Confidence 3211111 112344567788899885
No 59
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.13 E-value=0.002 Score=63.14 Aligned_cols=150 Identities=14% Similarity=0.146 Sum_probs=79.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeC----CCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC--
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVG----KNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSH-- 214 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~-- 214 (355)
..-+-|+|++|+|||+||+.+.+. ....| +.++.+ .-+.. ....+...+.....+++.+|+||++..
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~~l~~~~~g~--~~~~~~~~f~~A~~~~p~iLfLDEId~l~ 310 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPEIMSKLAGE--SESNLRKAFEEAEKNAPAIIFIDELDAIA 310 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHHHHHTSCTTH--HHHHHHHHHHHHHHTCSEEEEEESHHHHC
T ss_pred CCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEchHhhhhhcch--hHHHHHHHHHHHHhcCCcEEEecchhhhc
Confidence 445789999999999999999873 32222 223211 11111 111223333333446678999999831
Q ss_pred ------CC---hhhHHHHHHhhccCCC-CCcEEEEecCChh-Hhhhccc--CCcccccCCCCChhhHHHHhhhhCCCCC-
Q 036086 215 ------LN---DDNLANLRLLVSDMRL-VGFYVLVTTHSTS-VATMMMQ--TVPEAEHLIYFSESNSWSNLNCELPPSS- 280 (355)
Q Consensus 215 ------~~---~~~~~~l~~~l~~~~~-~gs~IlvTTR~~~-va~~~~~--~~~~~~~l~~L~~~~s~~Lf~~~af~~~- 280 (355)
.. ......+...+..... .+..||.||.... +-..+.. .....+.+...+.++-.++|...+-...
T Consensus 311 ~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l 390 (489)
T 3hu3_A 311 PKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL 390 (489)
T ss_dssp BCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB
T ss_pred cccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC
Confidence 01 1223344444442220 3445666666542 2222011 1224688899999999999987753221
Q ss_pred CCcchHHHHHHHHHHhcCCCc
Q 036086 281 QEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 281 ~~~~~~~~~~~~i~~~c~GlP 301 (355)
.....+.. ++..+.|.-
T Consensus 391 ~~~~~l~~----la~~t~g~s 407 (489)
T 3hu3_A 391 ADDVDLEQ----VANETHGHV 407 (489)
T ss_dssp CTTCCHHH----HHHTCTTCC
T ss_pred cchhhHHH----HHHHccCCc
Confidence 12223433 456777753
No 60
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.07 E-value=0.0029 Score=54.76 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=28.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccc---cC-CCCceEEEEeCCCCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDV---KS-RLPFKVWYSVGKNLD 184 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~ 184 (355)
.+++|+|+.|+|||||++.+...... .. .-...+|+.-...+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 58999999999999999998651111 00 123456776544444
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.00 E-value=0.0015 Score=67.66 Aligned_cols=146 Identities=12% Similarity=0.154 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHH-HHHHHHH
Q 036086 124 ESSVDSVKNALLRD-------GNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTA-VQEIRNR 195 (355)
Q Consensus 124 ~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i-~~~l~~~ 195 (355)
+..++.+...+... ......+-++|++|+|||+||+.+.+. ....-...+-+..+.-.+.... ...+...
T Consensus 497 ~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~ 574 (758)
T 3pxi_A 497 DEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHSTSGGQLTEK 574 (758)
T ss_dssp HHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCCCC---CHHH
T ss_pred HHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccccccccchhhHH
Confidence 44455555555421 122346889999999999999998873 2111112233443321110000 0011222
Q ss_pred HhhcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCC----------CCcEEEEecCC-----hh----Hhhhccc----
Q 036086 196 RNEIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRL----------VGFYVLVTTHS-----TS----VATMMMQ---- 252 (355)
Q Consensus 196 l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~----------~gs~IlvTTR~-----~~----va~~~~~---- 252 (355)
++. ....+|+||++...+.+....|...+..+.- ...+||+||.. .. +... +.
T Consensus 575 ~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~-f~p~l~ 650 (758)
T 3pxi_A 575 VRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRA-FRPEFI 650 (758)
T ss_dssp HHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHH-SCHHHH
T ss_pred HHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhh-CCHHHH
Confidence 222 1335899999987777778887776654210 24578888873 11 1111 11
Q ss_pred -CCcccccCCCCChhhHHHHhhhh
Q 036086 253 -TVPEAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 253 -~~~~~~~l~~L~~~~s~~Lf~~~ 275 (355)
.-+.++.+.+|++++-..++...
T Consensus 651 ~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 651 NRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp TTSSEEEECC--CHHHHHHHHHHH
T ss_pred hhCCeEEecCCCCHHHHHHHHHHH
Confidence 11247889999998888777654
No 62
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.00 E-value=0.0068 Score=55.50 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc-cccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCC---
Q 036086 126 SVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD-DVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPS--- 201 (355)
Q Consensus 126 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~--- 201 (355)
.+.++.+.+..-.....-|-|+|..|+|||++|+.+.+.. +....| +.++.+.-. ..++. ..+....+
T Consensus 10 ~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~---v~v~~~~~~--~~l~~---~~lfg~~~g~~ 81 (304)
T 1ojl_A 10 AMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPL---VTLNCAALN--ESLLE---SELFGHEKGAF 81 (304)
T ss_dssp HHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC---CEEECSSCC--HHHHH---HHHTCCCSSCC
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCe---EEEeCCCCC--hHHHH---HHhcCcccccc
Confidence 3444444443321122346699999999999999998732 111122 233333221 11111 11111100
Q ss_pred -------------CCcEEEEEeCCCCCChhhHHHHHHhhccCC----------CCCcEEEEecCC
Q 036086 202 -------------SKRLLFALDDVSHLNDDNLANLRLLVSDMR----------LVGFYVLVTTHS 243 (355)
Q Consensus 202 -------------~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~----------~~gs~IlvTTR~ 243 (355)
...-.|+||++..-.......+...+.... ....+||.||..
T Consensus 82 tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 82 TGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp C---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred CchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 012479999998766666667766665421 023577777765
No 63
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.00 E-value=0.00098 Score=59.24 Aligned_cols=128 Identities=12% Similarity=0.182 Sum_probs=63.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-----
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDF--STAVQEIRNRRNEIPSSKRLLFALDDVSHL----- 215 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~----- 215 (355)
-+.|+|+.|+||||||+.+.+. ....| +.+..+.-.+. ....+.+...+.........++++|++..-
T Consensus 47 ~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~ 121 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG 121 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCS
T ss_pred eEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCC
Confidence 4789999999999999999873 22222 23322211000 000011222233333455789999998310
Q ss_pred -----Ch----hhHHHHHHhhcc--CCCCCcEEEEecCChh-Hhhhccc--CCcccccCCCCChhhHHHHhhhhC
Q 036086 216 -----ND----DNLANLRLLVSD--MRLVGFYVLVTTHSTS-VATMMMQ--TVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 216 -----~~----~~~~~l~~~l~~--~~~~gs~IlvTTR~~~-va~~~~~--~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
.. .....+...+.. .. .+..||.||...+ +...+.. .-...+.+.+.+.++-.+++....
T Consensus 122 ~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 122 AGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTCCSS-SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCcCCCchHHHHHHHHHHHHhhCcccC-CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 00 122333333322 12 3455666766543 2222011 112456777777777777776543
No 64
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.97 E-value=0.0075 Score=54.35 Aligned_cols=128 Identities=11% Similarity=0.116 Sum_probs=68.1
Q ss_pred EEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-----
Q 036086 144 IHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD--FSTAVQEIRNRRNEIPSSKRLLFALDDVSHLN----- 216 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~----- 216 (355)
+.++|+.|+||||||+.+.+.. .. ..+++..+.-.+ .....+.+...+...-....+++++|++....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~--~~---~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~ 121 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES--GL---NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD 121 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT--TC---EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----
T ss_pred EEEECCCCCcHHHHHHHHHHHc--CC---CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCC
Confidence 8999999999999999998732 21 234444332211 11111122222222112357899999996310
Q ss_pred ------hhhHHHHHHhhccCCC-CCcEEEEecCChhHhhhc-c--cCCcccccCCCCChhhHHHHhhhhC
Q 036086 217 ------DDNLANLRLLVSDMRL-VGFYVLVTTHSTSVATMM-M--QTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 217 ------~~~~~~l~~~l~~~~~-~gs~IlvTTR~~~va~~~-~--~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
......+...+..+.. ...-++.+|...++...- . |.-+..+.+...+.++-.++|+...
T Consensus 122 ~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 122 RETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp -----CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 1122333334443320 233455566665543220 1 1223567788888888888887654
No 65
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.97 E-value=0.0011 Score=64.56 Aligned_cols=141 Identities=15% Similarity=0.133 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCC-----CCceEEEEeCCCCCHHHHH-HHHHHHHh
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSR-----LPFKVWYSVGKNLDFSTAV-QEIRNRRN 197 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~i~-~~l~~~l~ 197 (355)
+.+++.+++.|... ...-+-++|++|+|||+||+.+.+ .+... +...-++.++-......-. ..+...+.
T Consensus 186 ~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~ 261 (468)
T 3pxg_A 186 SKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMD 261 (468)
T ss_dssp HHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC----------CTTHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHH
Confidence 78888888888753 223356899999999999999876 32111 1111122221110000000 01112222
Q ss_pred hcCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHh------hhcccCCcccccCCCCChhhHHHH
Q 036086 198 EIPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVA------TMMMQTVPEAEHLIYFSESNSWSN 271 (355)
Q Consensus 198 ~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va------~~~~~~~~~~~~l~~L~~~~s~~L 271 (355)
..-..++.+|++| - ..+..+.+...+..+ .-++|.+|...... ..+...- ..+.+.+.+.++...+
T Consensus 262 ~~~~~~~~iLfiD--~--~~~a~~~L~~~L~~g---~v~vI~at~~~e~~~~~~~~~al~~Rf-~~i~v~~p~~e~~~~i 333 (468)
T 3pxg_A 262 EIRQAGNIILFID--A--AIDASNILKPSLARG---ELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQI 333 (468)
T ss_dssp HHHTCCCCEEEEC--C----------CCCTTSS---SCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHH
T ss_pred HHHhcCCeEEEEe--C--chhHHHHHHHhhcCC---CEEEEecCCHHHHHHHhhcCHHHHHhC-ccceeCCCCHHHHHHH
Confidence 2223467889999 2 333333344434322 24555555443311 1101112 4689999999999999
Q ss_pred hhhhC
Q 036086 272 LNCEL 276 (355)
Q Consensus 272 f~~~a 276 (355)
+....
T Consensus 334 L~~~~ 338 (468)
T 3pxg_A 334 LQGLR 338 (468)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 98654
No 66
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.95 E-value=0.0038 Score=56.86 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+..+.++|++|+|||+||+.+.+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345788899999999999999998
No 67
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.93 E-value=0.00075 Score=61.36 Aligned_cols=129 Identities=12% Similarity=0.157 Sum_probs=65.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-------CHHHHHHHHHHHHhhcCC--CCcEEEEEeC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-------DFSTAVQEIRNRRNEIPS--SKRLLFALDD 211 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-------~~~~i~~~l~~~l~~~l~--~kr~LlVlDd 211 (355)
..-+-++|++|+|||++|+.+.+. .... .+.+..+.-. +....+..+.......+. +...+|+||+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~--l~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE 124 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL--ANAP---FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDE 124 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEC
Confidence 345779999999999999999873 2221 2233333211 111222222111000010 2367999999
Q ss_pred CCCCChhh------------HHHHHHhhccC----------CCCCcEEEEecC----Ch-hHhhhcccCCcccccCCCCC
Q 036086 212 VSHLNDDN------------LANLRLLVSDM----------RLVGFYVLVTTH----ST-SVATMMMQTVPEAEHLIYFS 264 (355)
Q Consensus 212 vw~~~~~~------------~~~l~~~l~~~----------~~~gs~IlvTTR----~~-~va~~~~~~~~~~~~l~~L~ 264 (355)
+....... ...+...+... . .+..+|.||. .. .+...+.+.-...+.+.+++
T Consensus 125 i~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~ 203 (310)
T 1ofh_A 125 IDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKT-DHILFIASGAFQVARPSDLIPELQGRLPIRVELTALS 203 (310)
T ss_dssp GGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEEC-TTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCC
T ss_pred hhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccC-CcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcC
Confidence 97432221 44455444432 1 2345555542 11 11111011111358999999
Q ss_pred hhhHHHHhhhh
Q 036086 265 ESNSWSNLNCE 275 (355)
Q Consensus 265 ~~~s~~Lf~~~ 275 (355)
.++-..++.+.
T Consensus 204 ~~~~~~il~~~ 214 (310)
T 1ofh_A 204 AADFERILTEP 214 (310)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHhh
Confidence 99998888753
No 68
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.89 E-value=0.0034 Score=61.22 Aligned_cols=128 Identities=13% Similarity=0.177 Sum_probs=68.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC----
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDF--STAVQEIRNRRNEIPSSKRLLFALDDVSHLN---- 216 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~---- 216 (355)
-+.++|++|+||||||+.+.+. ....| +.++.+.-... ..-...+...+.....+.+.+|+||++..-.
T Consensus 51 gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~ 125 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG 125 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--
T ss_pred eEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcc
Confidence 3779999999999999999873 22222 23333321110 0001122233333334578999999985310
Q ss_pred ----------hhhHHHHHHhhcc--CCCCCcEEEEecCChhHhh-hccc--CCcccccCCCCChhhHHHHhhhhC
Q 036086 217 ----------DDNLANLRLLVSD--MRLVGFYVLVTTHSTSVAT-MMMQ--TVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 217 ----------~~~~~~l~~~l~~--~~~~gs~IlvTTR~~~va~-~~~~--~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
......+...+.. .. .+-.||.||...+... .+.. .-+..+.+.+.+.++-.++|..++
T Consensus 126 ~~~~g~~~~~~~~l~~LL~~ld~~~~~-~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 126 AGLGGGHDEREQTLNQLLVEMDGFDSK-EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp -------CHHHHHHHHHHHHHHHSCGG-GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred cccCcCcHHHHHHHHHHHHHHhccCCC-CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 0123344433321 12 3556777777654322 1022 222367778777777667776543
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.78 E-value=0.0035 Score=64.71 Aligned_cols=144 Identities=16% Similarity=0.150 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCcc---ccC-CCCceEEE-EeCC-----C--CCHHHHHHH
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDD---VKS-RLPFKVWY-SVGK-----N--LDFSTAVQE 191 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~---~~~-~F~~~~wv-~vs~-----~--~~~~~i~~~ 191 (355)
+.+.+++++.|... ...-+.++|.+|+||||+|+.+.+.-. +.. .+.+.+|. ..+. . -.....+
T Consensus 192 ~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l-- 267 (758)
T 1r6b_X 192 EKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRF-- 267 (758)
T ss_dssp HHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHH--
T ss_pred HHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHH--
Confidence 67788888888753 333457999999999999999876221 110 12333332 1111 1 1222222
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCC--------ChhhHHHHHHhhccCCCCCcEEEEecCChhHhhhccc------CCccc
Q 036086 192 IRNRRNEIPSSKRLLFALDDVSHL--------NDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATMMMQ------TVPEA 257 (355)
Q Consensus 192 l~~~l~~~l~~kr~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~~~~------~~~~~ 257 (355)
...+...-..+..+|++|++..- .......+...+-.. .+..+|.+|........ .. ..-..
T Consensus 268 -~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~~~~~~~-~~~d~aL~~Rf~~ 343 (758)
T 1r6b_X 268 -KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNI-FEKDRALARRFQK 343 (758)
T ss_dssp -HHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECHHHHHCC-CCCTTSSGGGEEE
T ss_pred -HHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCchHHhhh-hhcCHHHHhCceE
Confidence 22333333446789999999732 111212222222221 24456666654433211 11 11135
Q ss_pred ccCCCCChhhHHHHhhhh
Q 036086 258 EHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 258 ~~l~~L~~~~s~~Lf~~~ 275 (355)
+.+.+.+.++..+++...
T Consensus 344 i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 344 IDITEPSIEETVQIINGL 361 (758)
T ss_dssp EECCCCCHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHH
Confidence 789999999888877653
No 70
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.011 Score=56.25 Aligned_cols=148 Identities=12% Similarity=0.111 Sum_probs=78.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC-----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD-----FSTAVQEIRNRRNEIPSSKRLLFALDDVSHL 215 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-----~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~ 215 (355)
++=|-++|++|+|||.||+.+.+ ....+| +.|+.+.-.+ ....++.+ +...-...+++|.+|++..-
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~sk~vGese~~vr~l---F~~Ar~~aP~IIFiDEiDai 253 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQKYIGEGSRMVREL---FVMAREHAPSIIFMDEIDSI 253 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSCSSTTHHHHHHHHH---HHHHHHTCSEEEEEESSSCC
T ss_pred CCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhccccchHHHHHHHH---HHHHHHhCCceEeeecchhh
Confidence 45577999999999999999998 333333 3344332111 11222222 22222346899999998631
Q ss_pred --------Chh------hHHHHHHhhcc--CCCCCcEEEEecCChhH---hhhcccCCcccccCCCCChhhHHHHhhhhC
Q 036086 216 --------NDD------NLANLRLLVSD--MRLVGFYVLVTTHSTSV---ATMMMQTVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 216 --------~~~------~~~~l~~~l~~--~~~~gs~IlvTTR~~~v---a~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
... ....+...+.. .. .+-.||.||...+. |-.--|.-+..+.+...+.++-.++|+.+.
T Consensus 254 ~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 332 (405)
T 4b4t_J 254 GSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS 332 (405)
T ss_dssp TTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh
Confidence 011 12223333322 22 34456667755432 111012223678888888888788887654
Q ss_pred CCCC-CCcchHHHHHHHHHHhcCCCc
Q 036086 277 PPSS-QEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 277 f~~~-~~~~~~~~~~~~i~~~c~GlP 301 (355)
-.-. ....++.. ++..+.|+-
T Consensus 333 ~~~~l~~dvdl~~----lA~~t~G~S 354 (405)
T 4b4t_J 333 RKMNLTRGINLRK----VAEKMNGCS 354 (405)
T ss_dssp TTSBCCSSCCHHH----HHHHCCSCC
T ss_pred cCCCCCccCCHHH----HHHHCCCCC
Confidence 2211 12234444 457777765
No 71
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.64 E-value=0.0083 Score=58.13 Aligned_cols=94 Identities=9% Similarity=0.081 Sum_probs=56.1
Q ss_pred EEEEeCCCCCChhhHHHHHHhhccCCCCCcEEE-Ee---------cC----ChhHhhhcccCCcccccCCCCChhhHHHH
Q 036086 206 LFALDDVSHLNDDNLANLRLLVSDMRLVGFYVL-VT---------TH----STSVATMMMQTVPEAEHLIYFSESNSWSN 271 (355)
Q Consensus 206 LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~Il-vT---------TR----~~~va~~~~~~~~~~~~l~~L~~~~s~~L 271 (355)
++++|++..-+.+.++.|...+.... .. -+| .| |. ...+...+.... ..+++.+++.++....
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~-~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~-~~~~~~~~~~~e~~~i 374 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSI-AP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV-MIIRTMLYTPQEMKQI 374 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTT-CC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE-EEEECCCCCHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccC-CC-EEEEecCCccccccccccccccccCChhHHhhc-ceeeCCCCCHHHHHHH
Confidence 89999998777788888888776654 34 333 34 22 111111101111 4579999999999999
Q ss_pred hhhhCCCCCCCcchHHHHHHHHHHhc-CCCchHH
Q 036086 272 LNCELPPSSQEAHRVEDLETGSAMDE-EGVTSLT 304 (355)
Q Consensus 272 f~~~af~~~~~~~~~~~~~~~i~~~c-~GlPla~ 304 (355)
+.+.+-.... .--++....|+..+ .|-|-.+
T Consensus 375 L~~~~~~~~~--~~~~~~~~~i~~~a~~g~~r~a 406 (456)
T 2c9o_A 375 IKIRAQTEGI--NISEEALNHLGEIGTKTTLRYS 406 (456)
T ss_dssp HHHHHHHHTC--CBCHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHhCC--CCCHHHHHHHHHHccCCCHHHH
Confidence 9876411100 11234455677777 7888433
No 72
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.62 E-value=0.0026 Score=58.65 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=40.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEe--CCC-----CCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSV--GKN-----LDFSTAVQEIRNRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~-----~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~ 214 (355)
+++-|+|++|+||||||.++... .-...+|++. +.. .+...++..+.+.+.+ .+ +||+|++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~----~~-LLVIDsI~a 193 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ----HR-VIVIDSLKN 193 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH----CS-EEEEECCTT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh----CC-EEEEecccc
Confidence 46789999999999999998763 1123456666 221 2344444444444433 34 999999873
No 73
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.026 Score=54.28 Aligned_cols=149 Identities=11% Similarity=0.163 Sum_probs=78.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC----H-HHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD----F-STAVQEIRNRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~----~-~~i~~~l~~~l~~~l~~kr~LlVlDdvw~ 214 (355)
.++=|-++|++|+|||+||+.+.+. ..-+| +.++.+.-.+ . ...++.+ +...-...+++|.+|++..
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~sk~~Gese~~ir~~---F~~A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVDKYIGESARIIREM---FAYAKEHEPCIIFMDEVDA 285 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCCSSSSHHHHHHHHH---HHHHHHSCSEEEEEECCCS
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhccccchHHHHHHHHH---HHHHHhcCCceeeeecccc
Confidence 3466789999999999999999983 33222 2344332211 1 1222222 2222234789999999963
Q ss_pred C----------Ch----hhHHHHHHhhcc--CCCCCcEEEEecCChhHhhh-cccC--CcccccCCCCChhhHHHHhhhh
Q 036086 215 L----------ND----DNLANLRLLVSD--MRLVGFYVLVTTHSTSVATM-MMQT--VPEAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 215 ~----------~~----~~~~~l~~~l~~--~~~~gs~IlvTTR~~~va~~-~~~~--~~~~~~l~~L~~~~s~~Lf~~~ 275 (355)
- .. ..+..++..+.. .. .+..||.||...+.... +..+ -+..+.+...+.++-.++|+.+
T Consensus 286 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~ 364 (437)
T 4b4t_L 286 IGGRRFSEGTSADREIQRTLMELLTQMDGFDNL-GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIH 364 (437)
T ss_dssp SSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT-TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHH
T ss_pred cccccccCCCCcchHHHHHHHHHHHHhhcccCC-CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHH
Confidence 1 01 112233333332 22 34567777765543211 0122 2356778777777777777655
Q ss_pred CCCCC-CCcchHHHHHHHHHHhcCCCc
Q 036086 276 LPPSS-QEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 276 af~~~-~~~~~~~~~~~~i~~~c~GlP 301 (355)
.-.-. ....++.. +++.+.|+-
T Consensus 365 ~~~~~~~~d~dl~~----lA~~t~G~s 387 (437)
T 4b4t_L 365 TAKVKKTGEFDFEA----AVKMSDGFN 387 (437)
T ss_dssp HHTSCBCSCCCHHH----HHHTCCSCC
T ss_pred hcCCCCCcccCHHH----HHHhCCCCC
Confidence 32111 12233444 457777765
No 74
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.55 E-value=0.0018 Score=55.76 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 128 DSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 128 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
++|.+.+........+|+|+|+.|+|||||++.+..
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444443234567999999999999999999876
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.53 E-value=0.0035 Score=64.75 Aligned_cols=142 Identities=15% Similarity=0.119 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc---cccCCC-CceEEEEeCCCCCHHH-HHHHHHHHHhh
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD---DVKSRL-PFKVWYSVGKNLDFST-AVQEIRNRRNE 198 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~-i~~~l~~~l~~ 198 (355)
+..++++...|... ...-+-++|++|+|||++|+.+.+.- .+.... ++. ++.++-...... ....+...+..
T Consensus 186 ~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~g~~~~G~~e~~l~~~~~~ 262 (758)
T 3pxi_A 186 SKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDMGTKYRGEFEDRLKKVMDE 262 (758)
T ss_dssp HHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC----------CTTHHHHHHH
T ss_pred hHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEecccccccchHHHHHHHHHHH
Confidence 78888899888753 22236799999999999999987631 111111 122 222111000000 00012222233
Q ss_pred cCCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHh------hhcccCCcccccCCCCChhhHHHHh
Q 036086 199 IPSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVA------TMMMQTVPEAEHLIYFSESNSWSNL 272 (355)
Q Consensus 199 ~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va------~~~~~~~~~~~~l~~L~~~~s~~Lf 272 (355)
....++.+|++|. ..+..+.+...+.. ..-++|.||...... ..+...- ..+.+.+.+.++...++
T Consensus 263 ~~~~~~~iLfiD~----~~~~~~~L~~~l~~---~~v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il 334 (758)
T 3pxi_A 263 IRQAGNIILFIDA----AIDASNILKPSLAR---GELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQIL 334 (758)
T ss_dssp HHTCCCCEEEECC------------CCCTTS---SSCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHH
T ss_pred HHhcCCEEEEEcC----chhHHHHHHHHHhc---CCEEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHH
Confidence 3335778999992 33333333333332 234556555443311 1101111 46889999999999998
Q ss_pred hhhC
Q 036086 273 NCEL 276 (355)
Q Consensus 273 ~~~a 276 (355)
....
T Consensus 335 ~~~~ 338 (758)
T 3pxi_A 335 QGLR 338 (758)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 8543
No 76
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.51 E-value=0.0029 Score=54.06 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 126 SVDSVKNALLRD-GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 126 ~~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+.|.+.+... .....+|+|+|..|+|||||++.+..
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445666666653 34567999999999999999998875
No 77
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.46 E-value=0.026 Score=58.39 Aligned_cols=151 Identities=15% Similarity=0.167 Sum_probs=79.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEe----CCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSV----GKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHL 215 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~ 215 (355)
.++=|-++|++|+|||+||+.+.+. ...+| +.|+. +...... .+.+...+.......+++|++|++..-
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~l~sk~~ges--e~~lr~lF~~A~~~~PsIIfIDEiDal 309 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPEIMSKLAGES--ESNLRKAFEEAEKNAPAIIFIDELDAI 309 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHHHHSSCTTHH--HHHHHHHHHHHTTSCSEEEEEESGGGT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHHhhcccchHH--HHHHHHHHHHHHHcCCeEEEEehhccc
Confidence 3566889999999999999999983 33332 23432 1111111 113444445555677899999998531
Q ss_pred -------Ch----hhHHHHHHhhccCCC-CCcEEEEecCChh-Hhhhc--ccCCcccccCCCCChhhHHHHhhhhCCCCC
Q 036086 216 -------ND----DNLANLRLLVSDMRL-VGFYVLVTTHSTS-VATMM--MQTVPEAEHLIYFSESNSWSNLNCELPPSS 280 (355)
Q Consensus 216 -------~~----~~~~~l~~~l~~~~~-~gs~IlvTTR~~~-va~~~--~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~ 280 (355)
+. .....+...+..-.. .+--||.||...+ +-..+ .|.-+..+.+...+.++-.++|+...-...
T Consensus 310 ~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~ 389 (806)
T 3cf2_A 310 APKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK 389 (806)
T ss_dssp CCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE
T ss_pred ccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC
Confidence 00 112223222221110 2334555665433 22220 112235678888888888888876542211
Q ss_pred -CCcchHHHHHHHHHHhcCCCc
Q 036086 281 -QEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 281 -~~~~~~~~~~~~i~~~c~GlP 301 (355)
....++.. ++.++.|.-
T Consensus 390 ~~~dvdl~~----lA~~T~Gfs 407 (806)
T 3cf2_A 390 LADDVDLEQ----VANETHGHV 407 (806)
T ss_dssp ECTTCCHHH----HHHHCCSCC
T ss_pred CCcccCHHH----HHHhcCCCC
Confidence 12233444 446676665
No 78
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.43 E-value=0.00091 Score=57.63 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 127 VDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 127 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+..++.+ -+...-+.|+|++|+||||+|..+.+
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4455555543 22234689999999999999888876
No 79
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.43 E-value=0.0036 Score=59.14 Aligned_cols=35 Identities=11% Similarity=-0.039 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 128 DSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 128 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-++++.+..- ..-..++|+|..|+|||||++.+.+
T Consensus 162 iraID~~~pi-~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 162 ARVLDLASPI-GRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHHHHHSCC-BTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred ceeeeeeeee-cCCcEEEEecCCCCChhHHHHHHHH
Confidence 3455666543 2224689999999999999998865
No 80
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.42 E-value=0.0054 Score=53.51 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=30.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKS----RLPFKVWYSVGKNLDFS 186 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~ 186 (355)
.++.|+|.+|+|||||+..+........ .-...+|++....++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~ 73 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPE 73 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHH
Confidence 4899999999999999999876211111 12456788776655543
No 81
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.41 E-value=0.003 Score=59.28 Aligned_cols=96 Identities=11% Similarity=0.160 Sum_probs=60.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc------cc---cCC--CCc---eEEE---EeCCCCCHHHHHHHHHHHHhhcCCCCc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD------DV---KSR--LPF---KVWY---SVGKNLDFSTAVQEIRNRRNEIPSSKR 204 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~------~~---~~~--F~~---~~wv---~vs~~~~~~~i~~~l~~~l~~~l~~kr 204 (355)
.+++|+|+.|+|||||.+.+..-. .+ .+. |.. ..++ .+.... ......+...|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~------~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDT------LGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB------SCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeecccc------CCHHHHHHHHhhhCc
Confidence 489999999999999999875411 00 000 100 0111 111110 023446777888889
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhhh
Q 036086 205 LLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 205 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
=+|++|.+. +...++.+..... .|.-||+||...+.+..
T Consensus 198 dvillDEp~--d~e~~~~~~~~~~----~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 198 DIILVGEMR--DLETIRLALTAAE----TGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp SEEEESCCC--SHHHHHHHHHHHH----TTCEEEEEESCSSHHHH
T ss_pred CEEecCCCC--CHHHHHHHHHHHh----cCCEEEEEEccChHHHH
Confidence 999999998 6666666544422 45569999998876644
No 82
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.41 E-value=0.0035 Score=62.30 Aligned_cols=129 Identities=13% Similarity=0.191 Sum_probs=63.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----------HHHHHHhhcCCCCcEEEE
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-----------EIRNRRNEIPSSKRLLFA 208 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-----------~l~~~l~~~l~~kr~LlV 208 (355)
....+.++|++|+||||||+.+... ....| .-+.++...+...+.. .+...+..... ..-+++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~-~~~vl~ 180 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGK-LNPVFL 180 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC--------------------CHHHHHHTTCS-SSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhc-cCCEEE
Confidence 4558999999999999999999872 22222 1222222122111111 12222332222 334888
Q ss_pred EeCCCCCChh----hHHHHHHhhccCCC--------------CCcEEEEecCChh-HhhhcccCCcccccCCCCChhhHH
Q 036086 209 LDDVSHLNDD----NLANLRLLVSDMRL--------------VGFYVLVTTHSTS-VATMMMQTVPEAEHLIYFSESNSW 269 (355)
Q Consensus 209 lDdvw~~~~~----~~~~l~~~l~~~~~--------------~gs~IlvTTR~~~-va~~~~~~~~~~~~l~~L~~~~s~ 269 (355)
||++...... ....+...+..... ....||.||.... +...+.... .++.+.+++.++-.
T Consensus 181 lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~ 259 (543)
T 3m6a_A 181 LDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRM-EIINIAGYTEIEKL 259 (543)
T ss_dssp EEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHE-EEEECCCCCHHHHH
T ss_pred EhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhc-ceeeeCCCCHHHHH
Confidence 9998753322 22333333321110 1234565665432 111101112 46889999998888
Q ss_pred HHhhhh
Q 036086 270 SNLNCE 275 (355)
Q Consensus 270 ~Lf~~~ 275 (355)
.++.+.
T Consensus 260 ~Il~~~ 265 (543)
T 3m6a_A 260 EIVKDH 265 (543)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887664
No 83
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.40 E-value=0.022 Score=58.80 Aligned_cols=81 Identities=11% Similarity=0.192 Sum_probs=48.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC-------------HHHHHH--HHHHHHhhcCCCCcE
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD-------------FSTAVQ--EIRNRRNEIPSSKRL 205 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-------------~~~i~~--~l~~~l~~~l~~kr~ 205 (355)
...+-++|++|+|||++|+.+.+. ... ..+-+..+.-.+ ....-. .+...++. ....
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~--l~~---~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~---~~~~ 559 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK---HPHA 559 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH--HTC---EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH---CSSE
T ss_pred ceEEEEECCCCCcHHHHHHHHHHH--hcC---CEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh---CCCc
Confidence 457889999999999999998872 211 112233222111 111100 23333332 2357
Q ss_pred EEEEeCCCCCChhhHHHHHHhhcc
Q 036086 206 LFALDDVSHLNDDNLANLRLLVSD 229 (355)
Q Consensus 206 LlVlDdvw~~~~~~~~~l~~~l~~ 229 (355)
+|+||++.....+.++.|...+..
T Consensus 560 vl~lDEi~~~~~~~~~~Ll~~le~ 583 (758)
T 1r6b_X 560 VLLLDEIEKAHPDVFNILLQVMDN 583 (758)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHH
T ss_pred EEEEeCccccCHHHHHHHHHHhcC
Confidence 999999987777777777777654
No 84
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.37 E-value=0.025 Score=55.46 Aligned_cols=128 Identities=12% Similarity=0.160 Sum_probs=66.0
Q ss_pred EEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-----
Q 036086 144 IHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD--FSTAVQEIRNRRNEIPSSKRLLFALDDVSHLN----- 216 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~~----- 216 (355)
+.|+|+.|+||||||+.+.+. .... .+.++.+.-.+ .......+...+...-.....++++|++..-.
T Consensus 67 vLL~GppGtGKTtLaraIa~~--~~~~---~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~ 141 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE--ARVP---FITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS 141 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH--TTCC---EEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSS
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCCC---EEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhcc
Confidence 889999999999999999873 2222 23333321111 00111112222222222345899999994210
Q ss_pred -----hhh----HHHHHHhhccCCC-CCcEEEEecCChhHhhh-ccc--CCcccccCCCCChhhHHHHhhhhC
Q 036086 217 -----DDN----LANLRLLVSDMRL-VGFYVLVTTHSTSVATM-MMQ--TVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 217 -----~~~----~~~l~~~l~~~~~-~gs~IlvTTR~~~va~~-~~~--~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
.+. ...+...+..... .+..|+.||...++... +.. ..+..+.+...+.++-.+++..++
T Consensus 142 ~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 142 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp STTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred CcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 112 2334333433220 23445666766654221 011 112467788888887778877654
No 85
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.34 E-value=0.0077 Score=55.67 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 036086 144 IHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~ 163 (355)
+-|+|..|+|||+||+.+.+
T Consensus 48 vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 78999999999999999986
No 86
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.011 Score=57.15 Aligned_cols=151 Identities=12% Similarity=0.093 Sum_probs=78.8
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC----CCCH-HHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK----NLDF-STAVQEIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~~-~~i~~~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
..++=|-++|++|+|||+||+.+.+ ...-+| +.|+.+. .... ...++.+ +...-...+++|++|++.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~sk~vGesek~ir~l---F~~Ar~~aP~IIfiDEiD 312 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQKYVGEGARMVREL---FEMARTKKACIIFFDEID 312 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCCCSSSHHHHHHHHH---HHHHHHTCSEEEEEECCT
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhcccCCHHHHHHHHH---HHHHHhcCCceEeecccc
Confidence 3456678999999999999999998 333333 2333322 1111 1222222 222223568999999986
Q ss_pred CC--------Ch--h----hHHHHHHhhccCCC-CCcEEEEecCChhHh-hhcc--cCCcccccCCCCChhhHHHHhhhh
Q 036086 214 HL--------ND--D----NLANLRLLVSDMRL-VGFYVLVTTHSTSVA-TMMM--QTVPEAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 214 ~~--------~~--~----~~~~l~~~l~~~~~-~gs~IlvTTR~~~va-~~~~--~~~~~~~~l~~L~~~~s~~Lf~~~ 275 (355)
.. .. . ....+...+..... .+-.||.||...+.. ..+. |.-+..+.+...+.++-.++|+.+
T Consensus 313 ai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~ 392 (467)
T 4b4t_H 313 AVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIH 392 (467)
T ss_dssp TTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHH
T ss_pred cccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHH
Confidence 31 00 0 11222222322110 233456676544321 1101 222357888888888888888765
Q ss_pred CCCCC-CCcchHHHHHHHHHHhcCCCc
Q 036086 276 LPPSS-QEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 276 af~~~-~~~~~~~~~~~~i~~~c~GlP 301 (355)
.-.-. ....++.. +++.|.|+-
T Consensus 393 l~~~~l~~dvdl~~----LA~~T~GfS 415 (467)
T 4b4t_H 393 SKSMSVERGIRWEL----ISRLCPNST 415 (467)
T ss_dssp HTTSCBCSSCCHHH----HHHHCCSCC
T ss_pred hcCCCCCCCCCHHH----HHHHCCCCC
Confidence 42211 12234444 457787764
No 87
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.30 E-value=0.002 Score=52.97 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=18.7
Q ss_pred EEEEEEcCCCccHHHHHHHH
Q 036086 142 RFIHIVGVSGTDETAIAHRV 161 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v 161 (355)
.+|.|+|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 88
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.30 E-value=0.018 Score=52.99 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHH-H-HHhh-cC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIR-N-RRNE-IP 200 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~-~-~l~~-~l 200 (355)
+..++.+...+... .-+-++|++|+|||+||+.+.+ .....| ..+..+......++..... . .-.. ..
T Consensus 33 ~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~g~~~~~~~~~~~~~ 103 (331)
T 2r44_A 33 KYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLIGTMIYNQHKGNFEV 103 (331)
T ss_dssp HHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHHEEEEEETTTTEEEE
T ss_pred HHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcCCceeecCCCCceEe
Confidence 44455555555542 2477899999999999999887 222221 2233333333333221000 0 0000 00
Q ss_pred C-C--CcEEEEEeCCCCCChhhHHHHHHhhccC-----------CCCCcEEEEecCChh------HhhhcccCCcccccC
Q 036086 201 S-S--KRLLFALDDVSHLNDDNLANLRLLVSDM-----------RLVGFYVLVTTHSTS------VATMMMQTVPEAEHL 260 (355)
Q Consensus 201 ~-~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~~gs~IlvTTR~~~------va~~~~~~~~~~~~l 260 (355)
. + ...++++|++...+......+...+... . ....|+.|+.... +...+...-...+.+
T Consensus 104 ~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~-~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i 182 (331)
T 2r44_A 104 KKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLD-NPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHL 182 (331)
T ss_dssp EECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECC-SSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEEC
T ss_pred ccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECC-CCEEEEEecCCCcccCcccCCHHHHhheeEEEEc
Confidence 0 1 1258999999866666666666555432 2 2344555554221 111101111124788
Q ss_pred CCCChhhHHHHhhhhC
Q 036086 261 IYFSESNSWSNLNCEL 276 (355)
Q Consensus 261 ~~L~~~~s~~Lf~~~a 276 (355)
.+++.++-.+++.+..
T Consensus 183 ~~p~~~~~~~il~~~~ 198 (331)
T 2r44_A 183 TYLDKESELEVMRRVS 198 (331)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcc
Confidence 8999998888887764
No 89
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.21 E-value=0.0044 Score=56.47 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=22.8
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999998865
No 90
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.19 E-value=0.018 Score=60.33 Aligned_cols=98 Identities=12% Similarity=0.209 Sum_probs=54.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC---HHHHH------------HHHHHHHhhcCCCCcE
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD---FSTAV------------QEIRNRRNEIPSSKRL 205 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~---~~~i~------------~~l~~~l~~~l~~kr~ 205 (355)
...+.|+|+.|+|||++|+.+.+. ....=...+.+..+.-.. ...++ ..+...+.. ...-
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~ 662 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYS 662 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHH---CSSE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHh---CCCe
Confidence 357889999999999999998762 211001112233222111 01110 012222222 1235
Q ss_pred EEEEeCCCCCChhhHHHHHHhhccCCC----------CCcEEEEecCC
Q 036086 206 LFALDDVSHLNDDNLANLRLLVSDMRL----------VGFYVLVTTHS 243 (355)
Q Consensus 206 LlVlDdvw~~~~~~~~~l~~~l~~~~~----------~gs~IlvTTR~ 243 (355)
+|+||++...+.+..+.|...+..+.- .+..||+||..
T Consensus 663 vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 663 VILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred EEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 899999987777778888777764310 13447777764
No 91
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.053 Score=51.86 Aligned_cols=149 Identities=11% Similarity=0.129 Sum_probs=76.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC----CCC-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK----NLD-FSTAVQEIRNRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~-~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~ 214 (355)
.++=|-++|++|+|||.||+.+.+ ....+| +.++.+. ... ....++.+....+ ...+++|.+|++..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~l~sk~vGesek~ir~lF~~Ar---~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSELIQKYLGDGPRLCRQIFKVAG---ENAPSIVFIDEIDA 286 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGGGCCSSSSHHHHHHHHHHHHHH---HTCSEEEEEEEESS
T ss_pred CCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHHhhhccCchHHHHHHHHHHHHH---hcCCcEEEEehhhh
Confidence 346688999999999999999998 333332 2233221 111 1222222222222 34689999999863
Q ss_pred C--------C--h----hhHHHHHHhhcc--CCCCCcEEEEecCChhHhh-hccc--CCcccccCCCCChhhHHHHhhhh
Q 036086 215 L--------N--D----DNLANLRLLVSD--MRLVGFYVLVTTHSTSVAT-MMMQ--TVPEAEHLIYFSESNSWSNLNCE 275 (355)
Q Consensus 215 ~--------~--~----~~~~~l~~~l~~--~~~~gs~IlvTTR~~~va~-~~~~--~~~~~~~l~~L~~~~s~~Lf~~~ 275 (355)
- + . .....+...+.. .. .+-.||.||-..+... .+.. .-+..+.+...+.++-.++|+.+
T Consensus 287 i~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~-~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~ 365 (437)
T 4b4t_I 287 IGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR-GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIH 365 (437)
T ss_dssp SSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS-SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHH
T ss_pred hcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC-CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHH
Confidence 1 0 0 112223332222 22 3445666775544321 1011 12245778777777777888765
Q ss_pred CCCCC-CCcchHHHHHHHHHHhcCCCc
Q 036086 276 LPPSS-QEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 276 af~~~-~~~~~~~~~~~~i~~~c~GlP 301 (355)
.-.-. ....++.. ++..+.|+-
T Consensus 366 l~~~~l~~dvdl~~----LA~~T~GfS 388 (437)
T 4b4t_I 366 TSKMNLSEDVNLET----LVTTKDDLS 388 (437)
T ss_dssp HTTSCBCSCCCHHH----HHHHCCSCC
T ss_pred hcCCCCCCcCCHHH----HHHhCCCCC
Confidence 42211 12234444 446777764
No 92
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.13 E-value=0.003 Score=53.12 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-.+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999773
No 93
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.11 E-value=0.031 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+-++|+.|+|||++|+.+.+
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987
No 94
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.10 E-value=0.0088 Score=56.03 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=43.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----------------HHHHHHhhcC-CCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-----------------EIRNRRNEIP-SSK 203 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-----------------~l~~~l~~~l-~~k 203 (355)
.++.|+|++|+|||||+.++..... ..=...+|++....++.....+ ++...+...+ ..+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 5899999999999999999876321 1112356777666555442221 2222233222 244
Q ss_pred cEEEEEeCCC
Q 036086 204 RLLFALDDVS 213 (355)
Q Consensus 204 r~LlVlDdvw 213 (355)
.-++|+|.+-
T Consensus 140 ~dlvVIDSi~ 149 (356)
T 3hr8_A 140 VDLIVVDSVA 149 (356)
T ss_dssp CSEEEEECTT
T ss_pred CCeEEehHhh
Confidence 5689999875
No 95
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.07 E-value=0.01 Score=52.47 Aligned_cols=148 Identities=12% Similarity=0.116 Sum_probs=72.2
Q ss_pred EEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC---CCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-----
Q 036086 144 IHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK---NLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHL----- 215 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~----- 215 (355)
+.|+|+.|+|||||++.+.+. ... ..+.+..+. .+. ....+.+...++..-.....++++|++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~--~~~---~~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~ 125 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVEMFV-GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 125 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--TTC---CEEEEEHHHHHHSCT-THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCC---CEEEeeHHHHHHHHh-hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccC
Confidence 889999999999999999873 221 122332110 000 000112222233322345689999998310
Q ss_pred -----Chhh----HHHHHHhhccCCC-CCcEEEEecCChhHhhhc-cc--CCcccccCCCCChhhHHHHhhhhCCCCC-C
Q 036086 216 -----NDDN----LANLRLLVSDMRL-VGFYVLVTTHSTSVATMM-MQ--TVPEAEHLIYFSESNSWSNLNCELPPSS-Q 281 (355)
Q Consensus 216 -----~~~~----~~~l~~~l~~~~~-~gs~IlvTTR~~~va~~~-~~--~~~~~~~l~~L~~~~s~~Lf~~~af~~~-~ 281 (355)
.... ...+...+..+.. ...-++.||...++...- .. ..+..+.+...+.++-.+++...+-+.. .
T Consensus 126 ~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~ 205 (254)
T 1ixz_A 126 SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA 205 (254)
T ss_dssp ------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC
T ss_pred ccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCC
Confidence 0111 2233333433320 122344466655442210 11 1124677888888777777765542111 1
Q ss_pred CcchHHHHHHHHHHhcCCCc
Q 036086 282 EAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 282 ~~~~~~~~~~~i~~~c~GlP 301 (355)
....+. .++..+.|.-
T Consensus 206 ~~~~~~----~la~~~~G~~ 221 (254)
T 1ixz_A 206 EDVDLA----LLAKRTPGFV 221 (254)
T ss_dssp TTCCHH----HHHHTCTTCC
T ss_pred cccCHH----HHHHHcCCCC
Confidence 122233 3556777754
No 96
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.06 E-value=0.0027 Score=52.23 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 97
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.04 E-value=0.014 Score=54.35 Aligned_cols=51 Identities=8% Similarity=0.088 Sum_probs=35.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHH
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKS----RLPFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~ 190 (355)
.-.++.|+|.+|+||||||.++........ .=...+|++....++...+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 346889999999999999998876321211 123567898888777665443
No 98
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.00 E-value=0.0035 Score=51.98 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 99
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.00 E-value=0.013 Score=53.96 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=33.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCC----CCceEEEEeCCCCCHHHHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSR----LPFKVWYSVGKNLDFSTAV 189 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~ 189 (355)
.++.|+|.+|+||||||.++......... =...+|++....++...+.
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~ 159 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE 159 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH
Confidence 48899999999999999988753211110 2356788888877766544
No 100
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.96 E-value=0.084 Score=48.69 Aligned_cols=157 Identities=9% Similarity=-0.086 Sum_probs=94.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-CChh
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSH-LNDD 218 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~-~~~~ 218 (355)
-.++.-++|..|.||++.+..+.+... ...|+....+.+....++..+...... .-+.+++-++|+|++.. -+..
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~---~plf~~~kvvii~~~~~kl~~~ 92 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIFSLCQA---MSLFASRQTLLLLLPENGPNAA 92 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHHHHHHH---HHHCCSCEEEEEECCSSCCCTT
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHHHHhcC---cCCccCCeEEEEECCCCCCChH
Confidence 456888999999999999988866211 123432222344556677666543221 12345677888999865 4567
Q ss_pred hHHHHHHhhccCCCCCcEEEEecCC-------hhHhhhcccCCcccccCCCCChhhHHHHhhhhCCCCCCCcchHHHHHH
Q 036086 219 NLANLRLLVSDMRLVGFYVLVTTHS-------TSVATMMMQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEDLET 291 (355)
Q Consensus 219 ~~~~l~~~l~~~~~~gs~IlvTTR~-------~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~ 291 (355)
.++.+...+..-. .++.+|++|.. ..+... +......++..+++.++-...+.+.+-.. .- .--.+...
T Consensus 93 ~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~-i~sr~~~~~~~~l~~~~l~~~l~~~~~~~-g~-~i~~~a~~ 168 (343)
T 1jr3_D 93 INEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTA-LANRSVQVTCQTPEQAQLPRWVAARAKQL-NL-ELDDAANQ 168 (343)
T ss_dssp HHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHH-HTTTCEEEEECCCCTTHHHHHHHHHHHHT-TC-EECHHHHH
T ss_pred HHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHH-HHhCceEEEeeCCCHHHHHHHHHHHHHHc-CC-CCCHHHHH
Confidence 7888887776544 56776665532 234444 33333678899999888876666553111 10 11124455
Q ss_pred HHHHhcCCCchHH
Q 036086 292 GSAMDEEGVTSLT 304 (355)
Q Consensus 292 ~i~~~c~GlPla~ 304 (355)
.++..++|-+..+
T Consensus 169 ~l~~~~~gdl~~~ 181 (343)
T 1jr3_D 169 VLCYCYEGNLLAL 181 (343)
T ss_dssp HHHHSSTTCHHHH
T ss_pred HHHHHhchHHHHH
Confidence 5667777766443
No 101
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.96 E-value=0.016 Score=54.74 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 127 VDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 127 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
--++++.|..- ..-.-++|+|..|+|||+|++.+.+
T Consensus 162 GiraID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 162 STRLIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred cchhhhhcccc-cCCceEEEecCCCCChhHHHHHHHH
Confidence 34667777643 2223579999999999999988876
No 102
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.96 E-value=0.0034 Score=52.63 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 103
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.94 E-value=0.046 Score=53.54 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHH--HH-----HHH
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL-DFSTAVQ--EI-----RNR 195 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~--~l-----~~~ 195 (355)
+..++.+...+... .-|-++|++|+|||+||+.+.+.. .. ...++.+.-.+ ...+++. .. ...
T Consensus 28 ~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l--~~---~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~ 98 (500)
T 3nbx_X 28 SHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF--QN---ARAFEYLMTRFSTPEEVFGPLSIQALKDEGR 98 (500)
T ss_dssp HHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB--SS---CCEEEEECCTTCCHHHHHCCBC---------
T ss_pred HHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH--hh---hhHHHHHHHhcCCHHHhcCcccHHHHhhchh
Confidence 34445555545432 246799999999999999998732 11 11223333333 3333332 00 111
Q ss_pred HhhcCCC---CcEEEEEeCCCCCChhhHHHHHHhhccCC----C----CCcE-EEEecCC-hh-------HhhhcccCCc
Q 036086 196 RNEIPSS---KRLLFALDDVSHLNDDNLANLRLLVSDMR----L----VGFY-VLVTTHS-TS-------VATMMMQTVP 255 (355)
Q Consensus 196 l~~~l~~---kr~LlVlDdvw~~~~~~~~~l~~~l~~~~----~----~gs~-IlvTTR~-~~-------va~~~~~~~~ 255 (355)
+....++ ...++++|++...+......+...+..+. + ...+ +|+||.. .. .... + .
T Consensus 99 ~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldR-F--~- 174 (500)
T 3nbx_X 99 YERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDR-M--L- 174 (500)
T ss_dssp -CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTT-C--C-
T ss_pred HHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHH-H--H-
Confidence 1112222 23479999998767777777766664210 0 1122 3566632 11 1111 1 1
Q ss_pred ccccCCCCCh-hhHHHHhhhhC
Q 036086 256 EAEHLIYFSE-SNSWSNLNCEL 276 (355)
Q Consensus 256 ~~~~l~~L~~-~~s~~Lf~~~a 276 (355)
..+.++++++ ++-..++....
T Consensus 175 ~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 175 IRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp EEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHHHHHhhhhhhHHHHHhccc
Confidence 3467788877 44567776553
No 104
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.91 E-value=0.0046 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.631 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHh
Q 036086 141 VRFIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~ 162 (355)
-.+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3589999999999999999644
No 105
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.90 E-value=0.0038 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 106
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.89 E-value=0.0037 Score=53.26 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|.|+|+.|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 107
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.87 E-value=0.0049 Score=52.52 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....+|.|+|+.|+|||||++.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999876
No 108
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.84 E-value=0.0083 Score=54.45 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=26.6
Q ss_pred HHHHHHHhcC---CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 128 DSVKNALLRD---GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 128 ~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
++++.-++.. .....+|.|.|++|+||||+|+.+..
T Consensus 17 ~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 17 NDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444433 34467899999999999999999876
No 109
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.84 E-value=0.038 Score=50.81 Aligned_cols=72 Identities=7% Similarity=0.121 Sum_probs=46.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----------------HH-HHH---HhhcCC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-----------------EI-RNR---RNEIPS 201 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-----------------~l-~~~---l~~~l~ 201 (355)
++-|.|.+|+|||||+.++.....-...=...+|++....++.....+ ++ .+. +...-.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 689999999999999988765322110013567888887777654333 22 222 222234
Q ss_pred CCcEEEEEeCCCC
Q 036086 202 SKRLLFALDDVSH 214 (355)
Q Consensus 202 ~kr~LlVlDdvw~ 214 (355)
++.-|||+|-|..
T Consensus 110 ~~~~lvVIDSI~a 122 (333)
T 3io5_A 110 GEKVVVFIDSLGN 122 (333)
T ss_dssp TCCEEEEEECSTT
T ss_pred cCceEEEEecccc
Confidence 5678999999863
No 110
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.83 E-value=0.012 Score=52.83 Aligned_cols=148 Identities=11% Similarity=0.103 Sum_probs=71.2
Q ss_pred EEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC---CCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-----
Q 036086 144 IHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK---NLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHL----- 215 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~----- 215 (355)
+.|+|+.|+|||||++.+.+. ... ..+.+..+. .+. ....+.+...++..-.....++++|++...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~--~~~---~~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~ 149 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVEMFV-GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 149 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--TTC---CEEEEEHHHHHHSTT-THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--
T ss_pred EEEECCCcChHHHHHHHHHHH--cCC---CEEEecHHHHHHHHh-hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccc
Confidence 889999999999999999873 221 223332110 000 000011222222222235689999998310
Q ss_pred -----ChhhH----HHHHHhhccCCCC-CcEEEEecCChhHhhh-ccc--CCcccccCCCCChhhHHHHhhhhCCCCC-C
Q 036086 216 -----NDDNL----ANLRLLVSDMRLV-GFYVLVTTHSTSVATM-MMQ--TVPEAEHLIYFSESNSWSNLNCELPPSS-Q 281 (355)
Q Consensus 216 -----~~~~~----~~l~~~l~~~~~~-gs~IlvTTR~~~va~~-~~~--~~~~~~~l~~L~~~~s~~Lf~~~af~~~-~ 281 (355)
....+ ..+...+..+... ..-++.||...++... ... ..+..+.+.+.+.++-.+++...+-... .
T Consensus 150 ~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~ 229 (278)
T 1iy2_A 150 SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA 229 (278)
T ss_dssp ------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBC
T ss_pred cccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCC
Confidence 01112 2233333333201 2234445655443211 011 1125678888888877777766542111 1
Q ss_pred CcchHHHHHHHHHHhcCCCc
Q 036086 282 EAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 282 ~~~~~~~~~~~i~~~c~GlP 301 (355)
....+. .++..+.|..
T Consensus 230 ~~~~~~----~la~~~~G~~ 245 (278)
T 1iy2_A 230 EDVDLA----LLAKRTPGFV 245 (278)
T ss_dssp TTCCHH----HHHHTCTTCC
T ss_pred cccCHH----HHHHHcCCCC
Confidence 122232 3556777755
No 111
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.82 E-value=0.0035 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 112
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.81 E-value=0.0046 Score=52.52 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.81 E-value=0.019 Score=50.14 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=52.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC----------CCCHH------HHHHHHHHHHhhcCCCCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK----------NLDFS------TAVQEIRNRRNEIPSSKR 204 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----------~~~~~------~i~~~l~~~l~~~l~~kr 204 (355)
-.++.|.|..|+||||++..+.+.. ..+-...+.+.-.. ..... .-..++.+.+.+.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 4688899999999999988765522 11111111121110 00000 000145555666555555
Q ss_pred E-EEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCCh
Q 036086 205 L-LFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHST 244 (355)
Q Consensus 205 ~-LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~ 244 (355)
+ +||+|.+..-+.+..+.+.. +.+ .|-.||+|-+..
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~-L~~---~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANI-LAE---NGFVVIISGLDK 126 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHH-HHH---TTCEEEEECCSB
T ss_pred CCEEEEecCccCcHHHHHHHHH-HHh---CCCeEEEEeccc
Confidence 5 99999987444445444433 222 356788888743
No 114
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.80 E-value=0.0076 Score=53.48 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=27.6
Q ss_pred HHHHHHHHhcC---CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 127 VDSVKNALLRD---GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 127 ~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+.++..++.. .....+|.++|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34454555543 34467899999999999999999875
No 115
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.77 E-value=0.018 Score=54.15 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=43.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----------------HHHHHHhhcCC-CC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-----------------EIRNRRNEIPS-SK 203 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-----------------~l~~~l~~~l~-~k 203 (355)
.++.|.|.+|+||||||.++..... ..=...+|++....++.....+ ++...+..... ++
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 3778899999999999988765321 1113567888776665442111 22333333332 34
Q ss_pred cEEEEEeCCC
Q 036086 204 RLLFALDDVS 213 (355)
Q Consensus 204 r~LlVlDdvw 213 (355)
--+||+|.+-
T Consensus 153 ~~lVVIDsl~ 162 (366)
T 1xp8_A 153 IDVVVVDSVA 162 (366)
T ss_dssp CSEEEEECTT
T ss_pred CCEEEEeChH
Confidence 5699999985
No 116
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.77 E-value=0.0055 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 117
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.76 E-value=0.0041 Score=52.76 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.|.|+|+.|+|||||++.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 118
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.72 E-value=0.014 Score=53.74 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=35.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccC---------CC-----CceEEEEeCCCCCHHHHHH
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKS---------RL-----PFKVWYSVGKNLDFSTAVQ 190 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~i~~ 190 (355)
-.++-|+|.+|+||||||.++........ .. ...+|++....++...+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~ 161 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ 161 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH
Confidence 35899999999999999998875321111 11 3567888888877665543
No 119
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.70 E-value=0.0053 Score=51.41 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999877
No 120
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.69 E-value=0.0061 Score=51.27 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999875
No 121
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.68 E-value=0.0064 Score=50.40 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-.+|.|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 122
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.67 E-value=0.0065 Score=51.42 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.7
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.....+|+|+|+.|+||||+++.+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHH
Confidence 34567999999999999999999876
No 123
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.65 E-value=0.017 Score=54.03 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=42.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-----------------HHHHHHhhcC-CCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-----------------EIRNRRNEIP-SSK 203 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-----------------~l~~~l~~~l-~~k 203 (355)
.++.|+|.+|+||||||.++..... ..=...+|++....++.....+ ++...+.... ..+
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 4789999999999999998875221 1113456777776665432111 2222222222 235
Q ss_pred cEEEEEeCCC
Q 036086 204 RLLFALDDVS 213 (355)
Q Consensus 204 r~LlVlDdvw 213 (355)
.-+||+|.+-
T Consensus 140 ~~lIVIDsl~ 149 (349)
T 2zr9_A 140 LDIIVIDSVA 149 (349)
T ss_dssp CSEEEEECGG
T ss_pred CCEEEEcChH
Confidence 6699999975
No 124
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.65 E-value=0.007 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|+|+|+.|+|||||++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 125
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.64 E-value=0.0055 Score=51.22 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999876
No 126
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.64 E-value=0.0068 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|.|.|+.|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 127
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.61 E-value=0.006 Score=51.97 Aligned_cols=24 Identities=42% Similarity=0.663 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999875
No 128
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.61 E-value=0.022 Score=53.17 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=29.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCC---CCce-EEEEeCCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSR---LPFK-VWYSVGKNLD 184 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~---F~~~-~wv~vs~~~~ 184 (355)
-.++.|+|..|+|||||+..+......... .... +|++....+.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 468999999999999999998763211111 1223 7777655543
No 129
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.59 E-value=0.0049 Score=51.91 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 130
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.58 E-value=0.027 Score=58.52 Aligned_cols=129 Identities=14% Similarity=0.191 Sum_probs=65.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC---CCCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC--
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK---NLDFSTAVQEIRNRRNEIPSSKRLLFALDDVSHL-- 215 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~~-- 215 (355)
..-|.|+|++|+||||||+.+.+. ....| +.+..+. .+. ......+...+.........++++|++...
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 311 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPEIMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAP 311 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHHHSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchHhhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhh
Confidence 446889999999999999999873 32222 2333211 110 011112222233333345789999998421
Q ss_pred -----Ch----hhHHHHHHhhccCCC-CCcEEEEecCChh-Hhhhccc---CCcccccCCCCChhhHHHHhhhhC
Q 036086 216 -----ND----DNLANLRLLVSDMRL-VGFYVLVTTHSTS-VATMMMQ---TVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 216 -----~~----~~~~~l~~~l~~~~~-~gs~IlvTTR~~~-va~~~~~---~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
.. .....+...+..... .+-.+|.||...+ +-.. +. .-...+.+...+.++-.+++...+
T Consensus 312 ~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~a-l~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 312 KREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA-LRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTT-TTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHH-HhcccccccccccCCCCHHHHHHHHHHHH
Confidence 01 112223333322210 2334555555432 2211 11 112456778888888888887654
No 131
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.57 E-value=0.006 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|+|+|+.|+|||||++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 132
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.56 E-value=0.01 Score=55.98 Aligned_cols=96 Identities=9% Similarity=0.144 Sum_probs=55.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc------cc---cCC----C-CceEEEEe---C-CCCCHHHHHHHHHHHHhhcCC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD------DV---KSR----L-PFKVWYSV---G-KNLDFSTAVQEIRNRRNEIPS 201 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~------~~---~~~----F-~~~~wv~v---s-~~~~~~~i~~~l~~~l~~~l~ 201 (355)
.-.+++|+|+.|+|||||.+.+..-. .+ .+. + ....+|.- . .... +...+...+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~-------~~~~l~~~L~ 207 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKS-------FADALRAALR 207 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSC-------SHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHH-------HHHHHHHHhh
Confidence 34689999999999999999886411 11 000 0 01111211 1 1111 2334555566
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhh
Q 036086 202 SKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 202 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~ 248 (355)
..+-+|++|.+. +......+.... . .|..|+.|+...++..
T Consensus 208 ~~pd~illdE~~--d~e~~~~~l~~~---~-~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 208 EDPDVIFVGEMR--DLETVETALRAA---E-TGHLVFGTLHTNTAID 248 (372)
T ss_dssp SCCSEEEESCCC--SHHHHHHHHHHH---T-TTCEEEECCCCCSHHH
T ss_pred hCcCEEEECCCC--CHHHHHHHHHHH---h-cCCEEEEEECcchHHH
Confidence 667789999997 555444433332 3 4666888988776544
No 133
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.56 E-value=0.015 Score=53.70 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=22.6
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+.+|+|.|..|+|||||++.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567999999999999999998865
No 134
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.55 E-value=0.0068 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999976
No 135
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.54 E-value=0.0051 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|.|+|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 136
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.54 E-value=0.0063 Score=51.50 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999876
No 137
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.52 E-value=0.0067 Score=52.46 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 138
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.52 E-value=0.0065 Score=50.82 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 139
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.50 E-value=0.0082 Score=51.02 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....+|.|.|+.|+||||+++.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998875
No 140
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.48 E-value=0.0075 Score=50.69 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.++|+|+.|+|||||++.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998865
No 141
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.46 E-value=0.0076 Score=50.52 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998865
No 142
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.46 E-value=0.0085 Score=51.09 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 143
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.45 E-value=0.0067 Score=51.60 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999865
No 144
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.45 E-value=0.0058 Score=52.22 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|.|+|+.|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999876
No 145
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.43 E-value=0.0058 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 146
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.43 E-value=0.0091 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|.|+|+.|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 147
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.42 E-value=0.0076 Score=53.60 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999864
No 148
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.39 E-value=0.021 Score=52.91 Aligned_cols=97 Identities=9% Similarity=0.027 Sum_probs=52.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH---H---HH--H--HHHHHHhhcCCCCcEEEEEeC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFS---T---AV--Q--EIRNRRNEIPSSKRLLFALDD 211 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---~---i~--~--~l~~~l~~~l~~kr~LlVlDd 211 (355)
.+++|+|..|+|||||++.+..-. .. -...+.+.-...+... . +. . .....+...|..++-+++||.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~--~~-~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI--PK-EERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS--CT-TSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--cC-CCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 378999999999999999987621 11 1122222111000000 0 00 0 223345556667788899999
Q ss_pred CCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHh
Q 036086 212 VSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVA 247 (355)
Q Consensus 212 vw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va 247 (355)
+. +...++.+ ..+..+ +.-+|+||+..+..
T Consensus 249 ~~--~~e~~~~l-~~~~~g---~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 249 LR--SSEAYDFY-NVLCSG---HKGTLTTLHAGSSE 278 (330)
T ss_dssp CC--STHHHHHH-HHHHTT---CCCEEEEEECSSHH
T ss_pred CC--hHHHHHHH-HHHhcC---CCEEEEEEcccHHH
Confidence 88 44555544 333322 22377777766543
No 149
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.39 E-value=0.017 Score=55.84 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=28.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL 183 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 183 (355)
.++|+|..|+|||||++.+....... +-+..+++.+.+..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGert 192 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERT 192 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCc
Confidence 47899999999999999887743221 22445666666554
No 150
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.38 E-value=0.0078 Score=53.05 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999983
No 151
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.38 E-value=0.0092 Score=54.88 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3457999999999999999999876
No 152
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.33 E-value=0.0088 Score=51.25 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999875
No 153
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.33 E-value=0.02 Score=53.56 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=30.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFS 186 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 186 (355)
.++.|.|.+|+||||||.++..... ..=...+|++....++..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI 106 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHH
Confidence 4788999999999999998875321 111246788876666543
No 154
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.32 E-value=0.0089 Score=53.30 Aligned_cols=23 Identities=13% Similarity=0.427 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 155
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.32 E-value=0.0086 Score=49.93 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+++.|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999886
No 156
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.32 E-value=0.0066 Score=50.58 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.++|.|+|+.|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999875
No 157
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.31 E-value=0.008 Score=50.55 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999875
No 158
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.30 E-value=0.056 Score=52.25 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=50.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-------HHHHHHhhc----------------
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-------EIRNRRNEI---------------- 199 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-------~l~~~l~~~---------------- 199 (355)
.+.|.|.+|+||||++..+...- ...-...+.+.....-....+.. .+...+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l--~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~ 124 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL--ISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVP 124 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH--HHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH--HhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccc
Confidence 78999999999999999887632 22111223332222111111111 111112110
Q ss_pred CCCCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEec
Q 036086 200 PSSKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTT 241 (355)
Q Consensus 200 l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTT 241 (355)
...+--+||+|.+...+...+..+...++ .+.+|++.-
T Consensus 125 ~~~~~~~iiiDE~~~~~~~~~~~l~~~~~----~~~~~~~vG 162 (459)
T 3upu_A 125 DLAKCRVLICDEVSMYDRKLFKILLSTIP----PWCTIIGIG 162 (459)
T ss_dssp CCSSCSEEEESCGGGCCHHHHHHHHHHSC----TTCEEEEEE
T ss_pred cccCCCEEEEECchhCCHHHHHHHHHhcc----CCCEEEEEC
Confidence 01123488999987666777777777665 345666643
No 159
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.28 E-value=0.0032 Score=53.29 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=18.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999955543
No 160
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.27 E-value=0.0084 Score=49.34 Aligned_cols=24 Identities=13% Similarity=0.401 Sum_probs=20.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 161
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.25 E-value=0.011 Score=52.14 Aligned_cols=24 Identities=8% Similarity=0.321 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998865
No 162
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.02 Score=54.95 Aligned_cols=150 Identities=11% Similarity=0.100 Sum_probs=75.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC----CCCH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK----NLDF-STAVQEIRNRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~~-~~i~~~l~~~l~~~l~~kr~LlVlDdvw~ 214 (355)
.++=|-++|++|+|||+||+.+.+ ....+| +.++.+. .... ...++.+...-+ ...+++|.+|++..
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~~~~vGese~~ir~lF~~A~---~~aP~IifiDEiDa 285 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQLVQMYIGEGAKLVRDAFALAK---EKAPTIIFIDELDA 285 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCSSCSSHHHHHHHHHHHHHH---HHCSEEEEEECTHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhhhhcccchHHHHHHHHHHHHH---hcCCeEEeecchhh
Confidence 356678999999999999999998 333332 2333322 1111 122222222222 23589999999842
Q ss_pred ------CCh----hh----HHHHHHhhccCCC-CCcEEEEecCChhHhhh-ccc--CCcccccCCCCChhhHHHHhhhhC
Q 036086 215 ------LND----DN----LANLRLLVSDMRL-VGFYVLVTTHSTSVATM-MMQ--TVPEAEHLIYFSESNSWSNLNCEL 276 (355)
Q Consensus 215 ------~~~----~~----~~~l~~~l~~~~~-~gs~IlvTTR~~~va~~-~~~--~~~~~~~l~~L~~~~s~~Lf~~~a 276 (355)
... .. ...+...+..-.+ .+--||.||...+.... +.. .-+..+.+...+.++-.++|+.+.
T Consensus 286 l~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (434)
T 4b4t_M 286 IGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS 365 (434)
T ss_dssp HHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence 000 11 1223333332110 23345557765443211 011 123567788777777777776543
Q ss_pred CCC-CCCcchHHHHHHHHHHhcCCCc
Q 036086 277 PPS-SQEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 277 f~~-~~~~~~~~~~~~~i~~~c~GlP 301 (355)
-.- .....++.. +++.+.|+-
T Consensus 366 ~~~~~~~dvdl~~----lA~~t~G~s 387 (434)
T 4b4t_M 366 RKMTTDDDINWQE----LARSTDEFN 387 (434)
T ss_dssp HHSCBCSCCCHHH----HHHHCSSCC
T ss_pred cCCCCCCcCCHHH----HHHhCCCCC
Confidence 111 112233444 457777764
No 163
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.24 E-value=0.011 Score=49.43 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..|.+.|+.|+||||+++.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 164
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.23 E-value=0.016 Score=49.97 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
....+|.|+|.+|+|||||+..+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35688999999999999999988763
No 165
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.20 E-value=0.069 Score=45.47 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=31.2
Q ss_pred HHHHHHhhcCCCCc-EEEEEeCCCC---CChhhHHHHHHhhccCCCCCcEEEEecCCh
Q 036086 191 EIRNRRNEIPSSKR-LLFALDDVSH---LNDDNLANLRLLVSDMRLVGFYVLVTTHST 244 (355)
Q Consensus 191 ~l~~~l~~~l~~kr-~LlVlDdvw~---~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~ 244 (355)
......++.+.+.+ -|||||.+-. ...-..+.+...+.... ...-||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp-~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARP-GHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC-TTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc-CCCEEEEECCCC
Confidence 44455566665555 4999999821 01222344444444443 456799999986
No 166
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.19 E-value=0.01 Score=50.47 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 167
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.18 E-value=0.01 Score=49.57 Aligned_cols=23 Identities=9% Similarity=0.294 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 168
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.15 E-value=0.011 Score=49.61 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...|.|+|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998876
No 169
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.15 E-value=0.024 Score=51.90 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999999876
No 170
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.14 E-value=0.0076 Score=50.36 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
No 171
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.14 E-value=0.0094 Score=49.42 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.|.|+|+.|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 172
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.14 E-value=0.011 Score=54.26 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+++|+|++|+|||||+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999999875
No 173
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.13 E-value=0.017 Score=53.51 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....+++|+|+.|+||||++..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999876
No 174
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.12 E-value=0.041 Score=52.94 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+.+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 175
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.10 E-value=0.0092 Score=51.74 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999875
No 176
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.09 E-value=0.011 Score=52.46 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-.+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999873
No 177
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.08 E-value=0.01 Score=49.98 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|.|+.|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 178
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.08 E-value=0.013 Score=48.13 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.-.+++++|+.|.|||||.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 179
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.07 E-value=0.014 Score=50.01 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
....+|.|+|.+|+|||||+..+...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35689999999999999999988763
No 180
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.07 E-value=0.049 Score=52.71 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=33.4
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCC
Q 036086 129 SVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNL 183 (355)
Q Consensus 129 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 183 (355)
+.++.|..- ..=.-++|+|..|+|||+|++.+.+.. .+.+-+..+++-+.+..
T Consensus 142 r~ID~l~pi-gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~ 194 (482)
T 2ck3_D 142 KVVDLLAPY-AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERT 194 (482)
T ss_dssp HHHHHHSCE-ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCH
T ss_pred EEEeccccc-ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcc
Confidence 455555432 112358999999999999998887621 12333556666666543
No 181
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.06 E-value=0.012 Score=49.97 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|.|+|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999876
No 182
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.05 E-value=0.013 Score=51.87 Aligned_cols=25 Identities=8% Similarity=0.287 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998866
No 183
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.05 E-value=0.011 Score=49.45 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 184
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.01 E-value=0.0068 Score=51.83 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|+|+|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 185
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.01 E-value=0.0095 Score=49.04 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 186
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.99 E-value=0.0082 Score=50.16 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 187
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.99 E-value=0.024 Score=52.94 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 127 VDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 127 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+...+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3444555544455678999999999999999998754
No 188
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.98 E-value=0.012 Score=48.15 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 189
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.97 E-value=0.025 Score=52.77 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=27.0
Q ss_pred HHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 127 VDSVKNALLRD--GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 127 ~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++++.+... .+....|.|+|+.|+||||+++.+..
T Consensus 8 ~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 8 ADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34455554332 44566789999999999999998765
No 190
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.96 E-value=0.014 Score=50.64 Aligned_cols=25 Identities=12% Similarity=0.371 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...++|.|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999876
No 191
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.95 E-value=0.0089 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999865
No 192
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.91 E-value=0.013 Score=50.12 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999875
No 193
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.91 E-value=0.016 Score=52.42 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHh
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~ 162 (355)
....+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346799999999999999999886
No 194
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.02 Score=54.90 Aligned_cols=152 Identities=11% Similarity=0.124 Sum_probs=73.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCC---
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDF--STAVQEIRNRRNEIPSSKRLLFALDDVSH--- 214 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~l~~~l~~~l~~kr~LlVlDdvw~--- 214 (355)
.++=|-++|++|+|||+||+.+.+ ...-+| +.|+.+.-.+. -...+.+...+...-...++++.+|++..
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~ 279 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT 279 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhc
Confidence 345578999999999999999998 333332 23443322110 01111122222222234689999999841
Q ss_pred -------CCh----hhHHHHHHhhcc--CCCCCcEEEEecCChhHh-hhcc--cCCcccccCCCCChhhH-HHHhhhhCC
Q 036086 215 -------LND----DNLANLRLLVSD--MRLVGFYVLVTTHSTSVA-TMMM--QTVPEAEHLIYFSESNS-WSNLNCELP 277 (355)
Q Consensus 215 -------~~~----~~~~~l~~~l~~--~~~~gs~IlvTTR~~~va-~~~~--~~~~~~~~l~~L~~~~s-~~Lf~~~af 277 (355)
... .....+...+.. .. .|-.||.||...+.. ..+. |.-+..+.+..+++.+. ..+|+...-
T Consensus 280 ~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~-~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~ 358 (428)
T 4b4t_K 280 KRFDAQTGSDREVQRILIELLTQMDGFDQS-TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS 358 (428)
T ss_dssp SCSSSCSCCCCHHHHHHHHHHHHHHHSCSS-CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred cccCCCCCCChHHHHHHHHHHHHhhCCCCC-CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 011 112333333322 22 344566677654321 1101 22224566765655444 455544321
Q ss_pred CCC-CCcchHHHHHHHHHHhcCCCc
Q 036086 278 PSS-QEAHRVEDLETGSAMDEEGVT 301 (355)
Q Consensus 278 ~~~-~~~~~~~~~~~~i~~~c~GlP 301 (355)
.-. ....++.. ++..+.|+-
T Consensus 359 ~~~l~~~~dl~~----lA~~t~G~s 379 (428)
T 4b4t_K 359 KMSLAPEADLDS----LIIRNDSLS 379 (428)
T ss_dssp SSCBCTTCCHHH----HHHHTTTCC
T ss_pred CCCCCcccCHHH----HHHHCCCCC
Confidence 111 12233444 456777764
No 195
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.88 E-value=0.014 Score=51.05 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.3
Q ss_pred EEEEEEcCCCccHHHHHHHHh
Q 036086 142 RFIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~ 162 (355)
.+++|+|+.|+|||||++.+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 589999999999999999876
No 196
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.87 E-value=0.014 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999875
No 197
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.86 E-value=0.013 Score=49.97 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|.|.|+.|+||||+++.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 198
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.86 E-value=0.024 Score=51.95 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|.|+|.+|+||||++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 467999999999999999998876
No 199
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.84 E-value=0.013 Score=50.55 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 200
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.84 E-value=0.016 Score=49.28 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.-.+|+|.|+.|+||||+++.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 201
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.84 E-value=0.015 Score=50.62 Aligned_cols=23 Identities=9% Similarity=0.237 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-.+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 202
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.84 E-value=0.016 Score=53.39 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=20.2
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHh
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~ 162 (355)
++.+||+|.|-||+||||.+..+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHH
Confidence 356899999999999999887664
No 203
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.82 E-value=0.014 Score=49.05 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999877
No 204
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.82 E-value=0.051 Score=51.69 Aligned_cols=46 Identities=7% Similarity=0.062 Sum_probs=30.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCcccc----CCCCceEEEEeCCCCCHHH
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVK----SRLPFKVWYSVGKNLDFST 187 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~ 187 (355)
.++.|+|..|+|||||+..+.-..... ..-...+|++....++...
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r 228 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR 228 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH
Confidence 489999999999999999764211111 1223467887766665543
No 205
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.81 E-value=0.017 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+++|+|+.|+||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 206
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.81 E-value=0.025 Score=54.37 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=26.1
Q ss_pred EEEEcCCCccHHHHHHHHhcCccccCCCC----ceEEEEeCCC
Q 036086 144 IHIVGVSGTDETAIAHRVFTDDDVKSRLP----FKVWYSVGKN 182 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~ 182 (355)
++|+|..|+|||+|+.++.+.... +-+ ..+++-+.+.
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR 194 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGIT 194 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEEC
T ss_pred EEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCC
Confidence 688999999999999999884433 222 4456655544
No 207
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.79 E-value=0.015 Score=50.74 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999876
No 208
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.76 E-value=0.015 Score=51.28 Aligned_cols=22 Identities=9% Similarity=0.311 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999875
No 209
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.75 E-value=0.019 Score=49.42 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 210
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.75 E-value=0.014 Score=49.62 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+++|+|+.|+|||||.+.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999998875
No 211
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.73 E-value=0.03 Score=54.62 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+++|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999999876
No 212
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.72 E-value=0.015 Score=49.59 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|.|.|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 213
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.70 E-value=0.035 Score=51.18 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....+|.|+|.+|+||||++..+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999998865
No 214
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.69 E-value=0.017 Score=47.96 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-.+|.|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 215
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.68 E-value=0.019 Score=49.26 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|.|+|+.|+||||+++.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 216
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.65 E-value=0.034 Score=54.19 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=48.6
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCccHHHHH-HHHhcCccccCCCCc-eEEEEeCCCCCH-HHHHH---------------
Q 036086 129 SVKNALLRDGNTVRFIHIVGVSGTDETAIA-HRVFTDDDVKSRLPF-KVWYSVGKNLDF-STAVQ--------------- 190 (355)
Q Consensus 129 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~~-~~i~~--------------- 190 (355)
+.++.|..- ..-.-++|+|..|+|||+|| ..|.+.. .-+. .+++-+.+.... .++.+
T Consensus 164 raID~l~Pi-grGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~ 238 (515)
T 2r9v_A 164 KAIDSMIPI-GRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV 238 (515)
T ss_dssp HHHHHHSCE-ETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred ccccccccc-ccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence 345555432 11124789999999999995 5777743 2343 356777765432 23332
Q ss_pred ------------------HHHHHHhhcCCCCcEEEEEeCC
Q 036086 191 ------------------EIRNRRNEIPSSKRLLFALDDV 212 (355)
Q Consensus 191 ------------------~l~~~l~~~l~~kr~LlVlDdv 212 (355)
.+.+.++. +++..|+++||+
T Consensus 239 atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 276 (515)
T 2r9v_A 239 ASASDPASLQYIAPYAGCAMGEYFAY--SGRDALVVYDDL 276 (515)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEeccH
Confidence 44555555 589999999997
No 217
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.64 E-value=0.011 Score=51.38 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=15.8
Q ss_pred EEEEEEcCCCccHHHHHHHHh
Q 036086 142 RFIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~ 162 (355)
.+++|+|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999988
No 218
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.64 E-value=0.016 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 219
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.63 E-value=0.018 Score=50.73 Aligned_cols=22 Identities=14% Similarity=0.448 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999976
No 220
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.61 E-value=0.028 Score=49.45 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.....|.|.|+.|+||||+|+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999875
No 221
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.60 E-value=0.12 Score=45.08 Aligned_cols=96 Identities=10% Similarity=0.137 Sum_probs=50.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH--HHHHHH---------------H-HHHhhcCCCCc
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFS--TAVQEI---------------R-NRRNEIPSSKR 204 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~i~~~l---------------~-~~l~~~l~~kr 204 (355)
.|.+.|.||+||||+|..+.... ....++.. .+.+...-+.. .....+ . ..+...+..+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~~~G~~V~-v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~p 85 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-LRQGVRVM-AGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKAAP 85 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-HHTTCCEE-EEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHHCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHCCCCEE-EEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhcCC
Confidence 46788999999999988776532 22233332 33332211211 111100 0 00111111245
Q ss_pred EEEEEeCCCCC------ChhhHHHHHHhhccCCCCCcEEEEecCCh
Q 036086 205 LLFALDDVSHL------NDDNLANLRLLVSDMRLVGFYVLVTTHST 244 (355)
Q Consensus 205 ~LlVlDdvw~~------~~~~~~~l~~~l~~~~~~gs~IlvTTR~~ 244 (355)
=++|+|++-.. ....|..+...++ .|-.|+.|+..+
T Consensus 86 dlvIVDElG~~~~~~~r~~~~~qDV~~~l~----sgidVitT~Nlq 127 (228)
T 2r8r_A 86 SLVLVDELAHTNAPGSRHTKRWQDIQELLA----AGIDVYTTVNVQ 127 (228)
T ss_dssp SEEEESCTTCBCCTTCSSSBHHHHHHHHHH----TTCEEEEEEEGG
T ss_pred CEEEEeCCCCCCcccchhHHHHHHHHHHHc----CCCCEEEEcccc
Confidence 68999987532 2346777766555 354588887644
No 222
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.59 E-value=0.017 Score=48.87 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|.|+.|+||||+++.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999887
No 223
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.58 E-value=0.015 Score=50.17 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 224
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.58 E-value=0.031 Score=53.74 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 126 SVDSVKNALLRD-------GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 126 ~~~~l~~~L~~~-------~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-.+++.++|... ....++|.++|.+|+||||++..+..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344556655432 23578999999999999999988864
No 225
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.57 E-value=0.018 Score=51.48 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 226
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.57 E-value=0.018 Score=51.91 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999865
No 227
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.54 E-value=0.019 Score=49.19 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 228
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.53 E-value=0.035 Score=54.09 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=45.5
Q ss_pred EEEEEcCCCccHHHHH-HHHhcCccccCCCCc-eEEEEeCCCCCH-HHHHH-----------------------------
Q 036086 143 FIHIVGVSGTDETAIA-HRVFTDDDVKSRLPF-KVWYSVGKNLDF-STAVQ----------------------------- 190 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~~-~~i~~----------------------------- 190 (355)
-++|+|..|+|||+|| ..|.|.. .-+. .+++-+.+.... .++.+
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 4789999999999995 5777743 1343 467777765533 34433
Q ss_pred ----HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 ----EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 ----~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +++..|+++||+-
T Consensus 241 ~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 241 YTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 45666666 5999999999974
No 229
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.53 E-value=0.083 Score=51.29 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=34.9
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 036086 130 VKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLD 184 (355)
Q Consensus 130 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 184 (355)
.++.|..- ..=.-++|+|..|+|||+|++.+.+.. .+.|-+..+++-+.+...
T Consensus 155 vID~l~pi-gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~r 207 (498)
T 1fx0_B 155 VVNLLAPY-RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTR 207 (498)
T ss_dssp THHHHSCC-CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSH
T ss_pred Eeeeeccc-ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcH
Confidence 45555432 122357999999999999999887721 123456777877776553
No 230
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.52 E-value=0.019 Score=50.55 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999976
No 231
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.52 E-value=0.014 Score=50.36 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...|.|.|+.|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 232
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.50 E-value=0.051 Score=52.92 Aligned_cols=82 Identities=17% Similarity=0.278 Sum_probs=50.4
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCccHHHHH-HHHhcCccc----cCCCC-ceEEEEeCCCCCH-HHHHH-----------
Q 036086 129 SVKNALLRDGNTVRFIHIVGVSGTDETAIA-HRVFTDDDV----KSRLP-FKVWYSVGKNLDF-STAVQ----------- 190 (355)
Q Consensus 129 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~~~-~~i~~----------- 190 (355)
+.++.|..- ..-.-++|+|..|+|||+|| ..|.|.... .++-+ ..+++-+.+.... .++.+
T Consensus 151 raID~l~Pi-grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t 229 (510)
T 2ck3_A 151 KAVDSLVPI-GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229 (510)
T ss_dssp HHHHHHSCC-BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred eeecccccc-ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence 345555532 11234789999999999994 466663321 12344 3567777765533 23333
Q ss_pred ----------------------HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 ----------------------EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 ----------------------~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +++..||++||+-
T Consensus 230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 272 (510)
T 2ck3_A 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRD--NGKHALIIYDDLS 272 (510)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEcCHH
Confidence 34555555 5899999999973
No 233
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.50 E-value=0.02 Score=51.08 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999875
No 234
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.48 E-value=0.019 Score=52.31 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+++++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999998875
No 235
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.47 E-value=0.022 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999865
No 236
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.45 E-value=0.02 Score=51.31 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999875
No 237
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.42 E-value=0.038 Score=53.73 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=48.1
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCccHHHHH-HHHhcCccccCCCCc-eEEEEeCCCCCH-HHHHH---------------
Q 036086 129 SVKNALLRDGNTVRFIHIVGVSGTDETAIA-HRVFTDDDVKSRLPF-KVWYSVGKNLDF-STAVQ--------------- 190 (355)
Q Consensus 129 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~~-~~i~~--------------- 190 (355)
+.++.|..- ..-.-++|+|..|+|||+|| ..|.|.. +-+. .+++-+.+.... .++.+
T Consensus 151 raID~l~Pi-grGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 151 KAIDSMIPI-GRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHHSSCC-BTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred eeccccccc-ccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 345555432 11234789999999999995 4777732 2343 356666665432 23332
Q ss_pred ------------------HHHHHHhhcCCCCcEEEEEeCC
Q 036086 191 ------------------EIRNRRNEIPSSKRLLFALDDV 212 (355)
Q Consensus 191 ------------------~l~~~l~~~l~~kr~LlVlDdv 212 (355)
.+.+.++. +++..|+++||+
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEECH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 34555555 589999999997
No 238
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.42 E-value=0.021 Score=50.65 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999987
No 239
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.42 E-value=0.019 Score=48.04 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++.|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999886
No 240
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.42 E-value=0.021 Score=49.92 Aligned_cols=22 Identities=14% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999986
No 241
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.41 E-value=0.021 Score=51.14 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4799999999999999999875
No 242
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.39 E-value=0.021 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 243
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.39 E-value=0.022 Score=48.89 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 244
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.38 E-value=0.024 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+++|+|+.|+|||||+..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999876
No 245
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.37 E-value=0.066 Score=52.03 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=48.9
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCccHHHHH-HHHhcCccccCCCCc-eEEEEeCCCCCH-HHHHH---------------
Q 036086 129 SVKNALLRDGNTVRFIHIVGVSGTDETAIA-HRVFTDDDVKSRLPF-KVWYSVGKNLDF-STAVQ--------------- 190 (355)
Q Consensus 129 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~~-~~i~~--------------- 190 (355)
+.++.|..- ..-.-++|+|..|+|||+|+ ..+.|. .+-+. .+++-+.+.... .++.+
T Consensus 151 kaID~l~Pi-grGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ 225 (513)
T 3oaa_A 151 KAVDSMIPI-GRGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVV 225 (513)
T ss_dssp HHHHHHSCC-BTTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEE
T ss_pred eeecccccc-ccCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEE
Confidence 345555432 11124789999999999996 567663 12333 457777765432 22222
Q ss_pred ------------------HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 ------------------EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 ------------------~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.++. +++..||++||+-
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 226 ATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred ECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 45556665 5899999999973
No 246
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.35 E-value=0.018 Score=49.85 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999986
No 247
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.32 E-value=0.16 Score=53.52 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=56.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHH--------hcC--c---cccCCCCceEEEEeCCCCCHH----HHHH---HHHHHHhhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRV--------FTD--D---DVKSRLPFKVWYSVGKNLDFS----TAVQ---EIRNRRNEI 199 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v--------~~~--~---~~~~~F~~~~wv~vs~~~~~~----~i~~---~l~~~l~~~ 199 (355)
.-.+++|+|+.|.||||+.+.+ ... + .....|+ .++-.++-..+.. .... ++...++.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d-~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~- 738 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVD-CILARVGAGDSQLKGVSTFMAEMLETASILRS- 738 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCS-EEEEECC---------CHHHHHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHH-HHHHhcCchhhHHHhHhhhHHHHHHHHHHHHh-
Confidence 3468999999999999999998 110 0 0111122 1222222111111 1111 33333333
Q ss_pred CCCCcEEEEEeCCCCC-ChhhHH----HHHHhhccCCCCCcEEEEecCChhHhhh
Q 036086 200 PSSKRLLFALDDVSHL-NDDNLA----NLRLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 200 l~~kr~LlVlDdvw~~-~~~~~~----~l~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
..++-|++||..-.. +...-. .+...+.. . .|+.||++|++.+++..
T Consensus 739 -a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~-~g~~vl~aTH~~el~~l 790 (934)
T 3thx_A 739 -ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-K-IGAFCMFATHFHELTAL 790 (934)
T ss_dssp -CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-T-TCCEEEEEESCGGGGGG
T ss_pred -ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-c-CCCEEEEEcCcHHHHHH
Confidence 467789999998642 222222 22333332 2 47889999999888765
No 248
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.32 E-value=0.022 Score=50.70 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 249
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.30 E-value=0.023 Score=51.10 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 250
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.29 E-value=0.023 Score=48.09 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999865
No 251
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.29 E-value=0.023 Score=50.97 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999987
No 252
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.28 E-value=0.023 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999876
No 253
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.25 E-value=0.1 Score=51.26 Aligned_cols=78 Identities=13% Similarity=0.156 Sum_probs=48.8
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH-HHHH-----------------
Q 036086 129 SVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFS-TAVQ----------------- 190 (355)
Q Consensus 129 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~i~~----------------- 190 (355)
+.++.|..- ..-.-++|+|..|+|||+|++++.+.. +-+..+++-+.+..+.. ++++
T Consensus 216 rvID~l~Pi-gkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~r 290 (588)
T 3mfy_A 216 RVIDTFFPQ-AKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMER 290 (588)
T ss_dssp HHHHHHSCE-ETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGG
T ss_pred chhhccCCc-ccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccc
Confidence 345555432 112357999999999999999987632 22345555555443322 1111
Q ss_pred -----------------------HHHHHHhhcCCCCcEEEEEeCCC
Q 036086 191 -----------------------EIRNRRNEIPSSKRLLFALDDVS 213 (355)
Q Consensus 191 -----------------------~l~~~l~~~l~~kr~LlVlDdvw 213 (355)
.+.+.+++ +++..||++||+-
T Consensus 291 tvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd--~G~dVLl~~Dslt 334 (588)
T 3mfy_A 291 TVLIANTSNMPVAAREASIYTGITIAEYFRD--MGYDVALMADSTS 334 (588)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEECTT
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCCEEEeecchH
Confidence 45566665 4899999999984
No 254
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.24 E-value=0.023 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998876
No 255
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.22 E-value=0.018 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 256
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.21 E-value=0.037 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988764
No 257
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.21 E-value=0.024 Score=50.72 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999865
No 258
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.19 E-value=0.041 Score=44.84 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..|+|+|.+|+|||||...+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 259
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.18 E-value=0.025 Score=50.17 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999876
No 260
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.15 E-value=0.026 Score=50.21 Aligned_cols=22 Identities=9% Similarity=0.389 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999876
No 261
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.15 E-value=0.025 Score=51.04 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999875
No 262
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.09 E-value=0.028 Score=48.98 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..-.+|+|.|..|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3456999999999999999999887
No 263
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.07 E-value=0.027 Score=46.84 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-|+|+|.+|+|||||.+.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998773
No 264
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.06 E-value=0.033 Score=46.41 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
....|.|+|.+|+|||||...+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999987643
No 265
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.05 E-value=0.03 Score=50.02 Aligned_cols=96 Identities=9% Similarity=0.175 Sum_probs=52.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEE--------------eCC-C--CCHHHHHHHHHHHHhhcCCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYS--------------VGK-N--LDFSTAVQEIRNRRNEIPSSK 203 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--------------vs~-~--~~~~~i~~~l~~~l~~~l~~k 203 (355)
-.+++|+|+.|+|||||.+.+..- +...+...+++. +.+ . .+.. .+...+...|..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~----~l~~~la~aL~~~ 98 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTK----SFADALRAALRED 98 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBS----CHHHHHHHHHHHC
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHH----HHHHHHHHHHhhC
Confidence 468999999999999999987641 111111111110 000 0 0000 1122333334345
Q ss_pred cEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEecCChhHhh
Q 036086 204 RLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVTTHSTSVAT 248 (355)
Q Consensus 204 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvTTR~~~va~ 248 (355)
+=++++|..- +......+.... . .|.-|++||...+++.
T Consensus 99 p~illlDEp~--D~~~~~~~l~~~---~-~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 99 PDVIFVGEMR--DLETVETALRAA---E-TGHLVFGTLHTNTAID 137 (261)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHH---H-TTCEEEEEECCSSHHH
T ss_pred CCEEEeCCCC--CHHHHHHHHHHH---c-cCCEEEEEeCcchHHH
Confidence 6688899986 554444333322 2 4667999998876544
No 266
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.02 E-value=0.029 Score=48.23 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.++.|+|..|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999999874
No 267
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.02 E-value=0.031 Score=49.28 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....++.+.|.||+|||||+..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3467889999999999999999874
No 268
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.01 E-value=0.028 Score=49.31 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..+|.|.|+.|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 269
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.96 E-value=0.034 Score=44.57 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
+-|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 270
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.96 E-value=0.03 Score=46.97 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 271
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.95 E-value=0.028 Score=48.74 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 272
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.90 E-value=0.037 Score=51.29 Aligned_cols=25 Identities=12% Similarity=0.395 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..++|.|+|+.|+||||||..+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998763
No 273
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.89 E-value=0.028 Score=48.18 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 274
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.85 E-value=0.029 Score=48.34 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999876
No 275
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.85 E-value=0.031 Score=50.57 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 276
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.80 E-value=0.05 Score=45.05 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999998865
No 277
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.78 E-value=0.057 Score=44.06 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.....|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999998764
No 278
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.78 E-value=0.032 Score=47.99 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+|.|.|++|+||||.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 279
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.77 E-value=0.032 Score=48.62 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 280
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.76 E-value=0.033 Score=50.92 Aligned_cols=24 Identities=8% Similarity=0.293 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.-.+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 345799999999999999999875
No 281
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.74 E-value=0.028 Score=51.47 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4799999999999999999865
No 282
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.74 E-value=0.037 Score=50.30 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=21.0
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....++|+|+|-||+||||+|..+..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH
Confidence 45678999999999999999987754
No 283
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.73 E-value=0.035 Score=53.11 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....+|.|+|+.|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999876
No 284
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.72 E-value=0.034 Score=49.70 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999875
No 285
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.68 E-value=0.035 Score=51.19 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 286
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.68 E-value=0.019 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=18.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998865
No 287
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.67 E-value=0.047 Score=45.18 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...|+++|.+|+|||||...+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 288
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.65 E-value=0.039 Score=46.50 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 289
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.64 E-value=0.035 Score=44.50 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 290
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.60 E-value=0.037 Score=50.76 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.++|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999875
No 291
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.56 E-value=0.037 Score=50.86 Aligned_cols=25 Identities=12% Similarity=0.405 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.++++.|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999998853
No 292
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.55 E-value=0.034 Score=49.89 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
No 293
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.53 E-value=0.037 Score=50.01 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.++.|+|.+|+|||||++.+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 294
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.52 E-value=0.037 Score=49.59 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.++.|+|.+|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999998875
No 295
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.45 E-value=0.04 Score=44.44 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 296
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.43 E-value=0.068 Score=52.33 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=20.3
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHh
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~ 162 (355)
...++|.|+|.+|+||||++..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346799999999999999999887
No 297
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.41 E-value=0.099 Score=51.60 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 129 SVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 129 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
+.++.|..- ..-.-++|+|..|+|||+|++++.+.
T Consensus 221 rvID~l~Pi-grGqr~~Ifgg~g~GKT~L~~~ia~~ 255 (600)
T 3vr4_A 221 RVIDTFFPV-TKGGAAAVPGPFGAGKTVVQHQIAKW 255 (600)
T ss_dssp HHHHHHSCC-BTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred hhhhccCCc-cCCCEEeeecCCCccHHHHHHHHHhc
Confidence 455666542 12245789999999999999998763
No 298
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.39 E-value=0.042 Score=49.90 Aligned_cols=22 Identities=14% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999976
No 299
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.36 E-value=0.044 Score=47.82 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|+|+|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 300
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.36 E-value=0.058 Score=43.62 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998754
No 301
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.36 E-value=0.063 Score=43.60 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.--|.|+|.+|+|||||...+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987643
No 302
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.36 E-value=0.11 Score=48.76 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
+.++|+|+|.+|+|||||...+.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 46679999999999999999988753
No 303
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.34 E-value=0.047 Score=49.62 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+++++|.+|+||||++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 304
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.33 E-value=0.05 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++|.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 356899999999999999999875
No 305
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.27 E-value=0.23 Score=49.62 Aligned_cols=22 Identities=9% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||++.+..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999998865
No 306
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.27 E-value=0.044 Score=45.52 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
--|.++|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999987643
No 307
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.27 E-value=0.045 Score=43.99 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.-|.++|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999987643
No 308
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.26 E-value=0.26 Score=51.80 Aligned_cols=105 Identities=12% Similarity=0.136 Sum_probs=55.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc---cc----------cCCCCceEEEEeCCCCCHH-------HHHHHHHHHHhhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD---DV----------KSRLPFKVWYSVGKNLDFS-------TAVQEIRNRRNEI 199 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~---~~----------~~~F~~~~wv~vs~~~~~~-------~i~~~l~~~l~~~ 199 (355)
.-.+++|+|+.|.|||||.+.+..-. .. -..++ .++-.++-.-+.. .-++++...+..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d-~i~~~ig~~d~l~~~~stfs~em~~~~~il~~- 749 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD-GIFTRMGAADNIYKGRSTFMEELTDTAEIIRK- 749 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS-EEEEEC----------CCHHHHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH-HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-
Confidence 34689999999999999999874100 00 01111 1222222111111 111133333333
Q ss_pred CCCCcEEEEEeCCCCC-ChhhHH----HHHHhhccCCCCCcEEEEecCChhHhhh
Q 036086 200 PSSKRLLFALDDVSHL-NDDNLA----NLRLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 200 l~~kr~LlVlDdvw~~-~~~~~~----~l~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
..++-|++||..-.. +...-. .+...+.. . .|+.||++|++.+++..
T Consensus 750 -a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~-~-~g~tvl~vTH~~el~~l 801 (918)
T 3thx_B 750 -ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIR-D-VKSLTLFVTHYPPVCEL 801 (918)
T ss_dssp -CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHH-T-TCCEEEEECSCGGGGGH
T ss_pred -ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-h-cCCeEEEEeCcHHHHHH
Confidence 467889999998642 222211 22333322 2 47889999999887764
No 309
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.26 E-value=0.066 Score=48.73 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..++.++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999998875
No 310
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.25 E-value=0.043 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4789999999999999999865
No 311
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.21 E-value=0.048 Score=47.61 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.-.+|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 312
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.17 E-value=0.052 Score=43.85 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 313
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.16 E-value=0.048 Score=43.98 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-|.++|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998653
No 314
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.14 E-value=0.066 Score=49.92 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+.++|++|+|||++|+.+.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999987
No 315
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.13 E-value=0.09 Score=49.55 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....+++|+|+.|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3446899999999999999999986
No 316
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.06 E-value=0.057 Score=46.86 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=25.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGK 181 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 181 (355)
.++.|.|.+|+|||||+.++.... .. .=...+|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~-~~-~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG-LK-MGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-HH-TTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-Hh-cCCeEEEEEccC
Confidence 478999999999999988775421 11 112456666543
No 317
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.03 E-value=0.053 Score=44.97 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+.+|+|..|+|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999863
No 318
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.03 E-value=0.05 Score=50.83 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999864
No 319
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.02 E-value=0.053 Score=47.41 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...|.|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999886
No 320
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.01 E-value=0.061 Score=43.25 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 321
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.00 E-value=0.052 Score=43.77 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCc
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
-|.++|..|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887543
No 322
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.00 E-value=0.1 Score=48.42 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=22.2
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.....+|+|+|.+|+|||||+..+..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45568899999999999999998853
No 323
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.00 E-value=0.051 Score=50.97 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 4799999999999999999865
No 324
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.99 E-value=0.053 Score=51.75 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999986
No 325
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.96 E-value=0.043 Score=52.79 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCcc
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDD 166 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~ 166 (355)
-++|+|..|+|||+|+.++.+...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCB
T ss_pred EEEEecCCCCCchHHHHHHHHHHH
Confidence 467899999999999999887543
No 326
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.96 E-value=0.053 Score=43.80 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
--|.|+|..|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999987653
No 327
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.94 E-value=0.062 Score=44.71 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
....|.|+|..|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998765
No 328
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.92 E-value=0.054 Score=44.56 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998764
No 329
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.87 E-value=0.037 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|.|+|.+|+||||++..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988765
No 330
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.87 E-value=0.054 Score=50.67 Aligned_cols=23 Identities=9% Similarity=0.348 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 331
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.87 E-value=0.055 Score=52.26 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=27.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCC--CCceEEEEeCCCC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSR--LPFKVWYSVGKNL 183 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~ 183 (355)
-++|+|..|+|||+|+.++.++....+. =+..+++-+.+..
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~ 196 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITN 196 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCc
Confidence 4678899999999999999875443211 1245566666543
No 332
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.86 E-value=0.055 Score=43.38 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-|.|+|..|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988754
No 333
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.86 E-value=0.044 Score=48.69 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.....|.|.|..|+||||+++.+.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998876
No 334
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.84 E-value=0.055 Score=50.64 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 4789999999999999999875
No 335
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.84 E-value=0.06 Score=45.85 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.....|.++|.+|+|||||...+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999987643
No 336
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.83 E-value=0.1 Score=48.36 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=22.3
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-....+++|+|..|+|||||.+.+..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999863
No 337
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.82 E-value=0.055 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 4799999999999999999875
No 338
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.79 E-value=0.11 Score=51.85 Aligned_cols=105 Identities=18% Similarity=0.143 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH-------HHHHHHh
Q 036086 125 SSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQ-------EIRNRRN 197 (355)
Q Consensus 125 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-------~l~~~l~ 197 (355)
.+-...+..+.. -+++.|.|.+|.||||++..+.....-. ...+.++....-....+.. .+...+.
T Consensus 192 ~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~ 264 (574)
T 3e1s_A 192 EEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARRLGEVTGRTASTVHRLLG 264 (574)
T ss_dssp HHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTT
T ss_pred HHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHHhHhhhcccHHHHHHHHc
Confidence 334444444442 2578899999999999999887622111 2345554433222222221 1111111
Q ss_pred hc----CC-----CCcEEEEEeCCCCCChhhHHHHHHhhccCCCCCcEEEEe
Q 036086 198 EI----PS-----SKRLLFALDDVSHLNDDNLANLRLLVSDMRLVGFYVLVT 240 (355)
Q Consensus 198 ~~----l~-----~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~~gs~IlvT 240 (355)
.. .. .+--+||+|.+..-+...+..+...++ .|.++|+.
T Consensus 265 ~~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~----~~~~lilv 312 (574)
T 3e1s_A 265 YGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP----PGARVLLV 312 (574)
T ss_dssp EETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC----TTCEEEEE
T ss_pred CCcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc----CCCEEEEE
Confidence 00 00 122489999987666667777766655 35566653
No 339
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.78 E-value=0.056 Score=50.63 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4789999999999999999865
No 340
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.76 E-value=0.075 Score=43.39 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
...-|.|+|..|+|||||...+.++.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34568999999999999999887643
No 341
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.75 E-value=0.19 Score=42.66 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.|+|=|.-|+||||.++.+.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~ 22 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477889999999999999987
No 342
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.73 E-value=0.069 Score=44.24 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
...|.|+|..|+|||||...+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4568899999999999999987753
No 343
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.73 E-value=0.098 Score=42.61 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
+...-|.|+|..|+|||||...+.+..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568999999999999999987653
No 344
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.73 E-value=0.081 Score=42.70 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
--|.|+|.+|+|||||...+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999854
No 345
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.72 E-value=0.058 Score=50.74 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 4789999999999999999875
No 346
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.71 E-value=0.053 Score=45.73 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..|.++|.+|+|||||...+.++
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998763
No 347
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.71 E-value=0.057 Score=44.69 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 348
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.70 E-value=0.15 Score=45.27 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=26.2
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 130 VKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 130 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
+.+.+...+.....|.++|.+|+|||||...+.+..
T Consensus 28 ~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 28 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 333344334445678899999999999999988654
No 349
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.69 E-value=0.099 Score=42.88 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
....-|.|+|..|+|||||...+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999998754
No 350
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.69 E-value=0.063 Score=44.34 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCc
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
-|.|+|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999987753
No 351
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.67 E-value=0.06 Score=43.88 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 446899999999999999998754
No 352
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.66 E-value=0.05 Score=50.72 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 4799999999999999999875
No 353
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.65 E-value=0.046 Score=46.26 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.-..|+|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999988764
No 354
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.64 E-value=0.06 Score=50.62 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 4789999999999999999864
No 355
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.63 E-value=0.056 Score=44.84 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.--|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999987764
No 356
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.62 E-value=0.061 Score=44.75 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999877654
No 357
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.61 E-value=0.073 Score=43.84 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
--|.|+|..|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999987654
No 358
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.60 E-value=0.026 Score=50.03 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=61.4
Q ss_pred EEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCC---------CCHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 036086 144 IHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKN---------LDFSTAVQEIRNRRNEIPSSKRLLFALDDVSH 214 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---------~~~~~i~~~l~~~l~~~l~~kr~LlVlDdvw~ 214 (355)
+.++|++|+|||+||+.+.+. ....|- .+..+.- .....++ .... ..+..+|+||++..
T Consensus 47 vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~----~~a~---~~~~~vl~iDEid~ 114 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFIEMFVGLGASRVRDLF----ETAK---KQAPSIIFIDEIDA 114 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTTTSCSSSCSSSSSTTH----HHHH---HSCSCEEEESCGGG
T ss_pred EEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHHHhhcchHHHHHHHHH----HHHH---hcCCeEEEEeChhh
Confidence 679999999999999999873 222221 0111100 0011111 1111 13568999999952
Q ss_pred CCh---------------hhHHHHHHhhccC--CCCCcEEEEecCChhHh-hhccc--CCcccccCCCCChhhHHHHhhh
Q 036086 215 LND---------------DNLANLRLLVSDM--RLVGFYVLVTTHSTSVA-TMMMQ--TVPEAEHLIYFSESNSWSNLNC 274 (355)
Q Consensus 215 ~~~---------------~~~~~l~~~l~~~--~~~gs~IlvTTR~~~va-~~~~~--~~~~~~~l~~L~~~~s~~Lf~~ 274 (355)
-.. .....+...+... ......||.||...... ..... .....+.+.+.+.++-.+++..
T Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~ 194 (268)
T 2r62_A 115 IGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKV 194 (268)
T ss_dssp TTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHH
T ss_pred hcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHH
Confidence 111 1122222222211 10224566677655321 11011 1124678888888888888876
Q ss_pred hC
Q 036086 275 EL 276 (355)
Q Consensus 275 ~a 276 (355)
..
T Consensus 195 ~~ 196 (268)
T 2r62_A 195 HI 196 (268)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 359
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.60 E-value=0.063 Score=43.23 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
--|.++|..|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998753
No 360
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.60 E-value=0.1 Score=42.54 Aligned_cols=25 Identities=16% Similarity=0.326 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4557899999999999999998765
No 361
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.59 E-value=0.074 Score=43.72 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998864
No 362
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.58 E-value=0.065 Score=43.72 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345889999999999999998754
No 363
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.54 E-value=0.065 Score=43.66 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
...-|.|+|..|+|||||...+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34578999999999999999987654
No 364
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.51 E-value=0.046 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999864
No 365
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.46 E-value=0.063 Score=43.16 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=18.2
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 036086 144 IHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~ 163 (355)
|.++|.+|+|||||...+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999864
No 366
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.46 E-value=0.066 Score=44.59 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346889999999999999888654
No 367
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.43 E-value=0.071 Score=47.20 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788889999999999988764
No 368
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.43 E-value=0.077 Score=43.52 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..-|.|+|..|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998754
No 369
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.40 E-value=0.079 Score=49.33 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999875
No 370
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.40 E-value=0.066 Score=44.09 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.--|.|+|..|+|||||...+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999987543
No 371
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.40 E-value=0.095 Score=43.64 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.....|.|+|..|+|||||...+.+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456678999999999999999988754
No 372
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.39 E-value=0.18 Score=44.66 Aligned_cols=37 Identities=8% Similarity=0.201 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 129 SVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 129 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
++.+.+.........|+++|..|+|||||...+....
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3333444333445678999999999999999988654
No 373
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.37 E-value=0.058 Score=49.12 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 036086 144 IHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~ 163 (355)
|+|+|..|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 49999999999999999875
No 374
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.37 E-value=0.058 Score=44.17 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
--|.++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998764
No 375
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.36 E-value=0.067 Score=44.71 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..|.++|.+|+|||||...+.++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998764
No 376
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.33 E-value=0.1 Score=44.99 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.....|.|+|.+|+|||||...+.+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678999999999999999987653
No 377
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.32 E-value=0.071 Score=43.75 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
..-|.|+|..|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3468899999999999999987643
No 378
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.30 E-value=0.069 Score=50.67 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
++|.|.|+.|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999998864
No 379
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.28 E-value=0.097 Score=42.56 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
--|.|+|..|+|||||...+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998754
No 380
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.28 E-value=0.099 Score=43.10 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..-|.|+|..|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 381
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.27 E-value=0.1 Score=44.03 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.--|.++|..|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999888754
No 382
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.27 E-value=0.093 Score=42.27 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
--|.|+|..|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998754
No 383
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.25 E-value=0.097 Score=43.46 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
..--|.|+|..|+|||||...+.++.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999987654
No 384
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.25 E-value=0.08 Score=47.58 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 46788899999999999988764
No 385
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.23 E-value=0.074 Score=43.66 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
--|.++|.+|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988754
No 386
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.23 E-value=0.088 Score=44.25 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHh
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~ 162 (355)
....|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 44578999999999999999985
No 387
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.20 E-value=0.074 Score=44.24 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.--|.|+|..|+|||||...+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999887643
No 388
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.20 E-value=0.099 Score=42.20 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998654
No 389
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.18 E-value=0.084 Score=43.56 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
...-|.|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999988654
No 390
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.17 E-value=0.076 Score=43.48 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
--|.|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998764
No 391
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.16 E-value=0.1 Score=42.64 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..-|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998764
No 392
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.15 E-value=0.073 Score=50.38 Aligned_cols=22 Identities=9% Similarity=0.378 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 4799999999999999999875
No 393
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.11 E-value=0.078 Score=44.45 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..-|.++|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999997766
No 394
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.10 E-value=0.064 Score=50.21 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|+|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999876
No 395
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.10 E-value=0.19 Score=41.53 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...-|.|+|..|+|||||...+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4456899999999999999998854
No 396
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.09 E-value=0.087 Score=45.02 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+.|.|.|+.|+||||||..+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999876
No 397
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.08 E-value=0.11 Score=43.43 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
...-|.|+|..|+|||||...+.++.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999999987543
No 398
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.08 E-value=0.086 Score=44.23 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.--|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999987653
No 399
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.08 E-value=0.07 Score=49.69 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 129 SVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 129 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
++++-++. -..-.+++|+|..|+|||||.+.+.+
T Consensus 60 ~ald~ll~-i~~Gq~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 60 RAIDGLLT-CGIGQRIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp HHHHHHSC-EETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEeeee-ecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34555532 12234799999999999999999876
No 400
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.08 E-value=0.077 Score=44.58 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
...-|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999987643
No 401
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.02 E-value=0.081 Score=43.21 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.--|.++|..|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4468999999999999999987643
No 402
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.95 E-value=0.082 Score=44.21 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.--|.|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999998764
No 403
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.93 E-value=0.087 Score=44.08 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998654
No 404
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=91.90 E-value=0.12 Score=50.74 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=19.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.-++|+|..|+|||+|++++.+
T Consensus 222 qr~~Ifg~~g~GKT~l~~~ia~ 243 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQSLAK 243 (578)
T ss_dssp CEEEECCCTTSCHHHHHHHHHH
T ss_pred CEEeeeCCCCccHHHHHHHHHh
Confidence 3579999999999999999876
No 405
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.89 E-value=0.072 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 406
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.89 E-value=0.081 Score=44.13 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.--|.|+|..|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999987643
No 407
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.84 E-value=0.097 Score=44.35 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
...|.|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999987643
No 408
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.83 E-value=0.09 Score=44.03 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.--|.|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3467899999999999999887643
No 409
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.82 E-value=0.12 Score=42.88 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
..--|.|+|..|+|||||...+.+..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568899999999999999987643
No 410
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.78 E-value=0.12 Score=44.87 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.....|+|+|..|+|||||...+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345678999999999999999988754
No 411
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.76 E-value=0.089 Score=43.91 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
..-|.|+|..|+|||||...+.++.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999987653
No 412
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.76 E-value=0.098 Score=50.07 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...++.++|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998875
No 413
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.76 E-value=0.088 Score=43.71 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.--|.|+|..|+|||||...+.+..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3457899999999999999988753
No 414
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.75 E-value=0.099 Score=51.45 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....+|.++|+.|+||||+|+.+..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 415
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.73 E-value=0.091 Score=43.58 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.--|.|+|..|+|||||...+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999987643
No 416
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.71 E-value=0.087 Score=44.27 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
...-|.|+|.+|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34568999999999999999987643
No 417
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.71 E-value=0.1 Score=47.39 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3458999999999999999998764
No 418
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.71 E-value=0.091 Score=44.21 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..--|.|+|..|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999998764
No 419
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.71 E-value=0.087 Score=44.74 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...-|.|+|.+|+|||||...+.+.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998764
No 420
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.69 E-value=0.12 Score=42.94 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.--|.++|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4468899999999999999987654
No 421
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.67 E-value=0.093 Score=43.65 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.--|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999987643
No 422
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.64 E-value=0.13 Score=46.99 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 138 GNTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 138 ~~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
......|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 445789999999999999999998764
No 423
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.57 E-value=0.095 Score=43.91 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.--|.|+|.+|+|||||...+.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999998763
No 424
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.54 E-value=0.098 Score=43.34 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
--|.|+|..|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999987643
No 425
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.54 E-value=0.097 Score=43.40 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...-|.|+|..|+|||||...+.+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999998754
No 426
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.54 E-value=0.081 Score=52.45 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-.++.|+|+.|+|||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 46899999999999999999987
No 427
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.53 E-value=0.097 Score=43.92 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...-|.|+|..|+|||||...+.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999998754
No 428
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.52 E-value=0.094 Score=44.42 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...-|.|+|..|+|||||...+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999987654
No 429
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.46 E-value=0.091 Score=43.62 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.--|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999987654
No 430
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.43 E-value=0.1 Score=44.53 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998764
No 431
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.43 E-value=0.099 Score=43.06 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..-|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998764
No 432
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.40 E-value=0.098 Score=43.54 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 345789999999999999998764
No 433
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.37 E-value=0.076 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|+|||||++.+..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999998865
No 434
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.36 E-value=0.095 Score=45.82 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 036086 143 FIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-++|.|++|+||||+|+.+.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 579999999999999998876
No 435
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.36 E-value=0.12 Score=47.35 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=27.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVG 180 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 180 (355)
.++.|.|.+|+||||||.++..+...++ ...+|++..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE 105 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE 105 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC
Confidence 5788999999999999999875332222 456677654
No 436
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.35 E-value=0.099 Score=44.01 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
..-|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999987643
No 437
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.35 E-value=0.094 Score=43.62 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
--|.|+|..|+|||||...+.++
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 45889999999999999998764
No 438
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.34 E-value=0.15 Score=43.60 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..|+|-|.-|+||||+++.+.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999999887
No 439
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.34 E-value=0.092 Score=50.23 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...-++|+|..|+|||||.+.++.-
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3334999999999999999998763
No 440
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.31 E-value=0.14 Score=43.77 Aligned_cols=25 Identities=4% Similarity=0.068 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
....+|+|+|+.|+||+|+|..+-+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 4567999999999999999988755
No 441
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.31 E-value=0.19 Score=44.92 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 128 DSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 128 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.-+.+||....+...-|.++|++|.|||++|..+.+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 335556654323345689999999999999999886
No 442
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.25 E-value=0.1 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||++.+..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3789999999999999999986
No 443
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.24 E-value=0.35 Score=56.34 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=62.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhh
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDN 219 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~ 219 (355)
.+=.-+||.||+|||+|++.+.. +.+ ++ ..=+.+++.++..+.-.++...++.. .++++..++++|-.-.+..-
T Consensus 1609 ~G~~LLvGvgGsGkqSltrLaa~---i~~-~~-~fqi~~~~~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~F 1683 (2695)
T 4akg_A 1609 QGHMMLIGASRTGKTILTRFVAW---LNG-LK-IVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETAF 1683 (2695)
T ss_dssp SEEEEEECTTTSCHHHHHHHHHH---HTT-CE-EECCCCCTTCCHHHHHHHHHHHHHHHHHSCCCEEEEEETTTCCSHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHH---HhC-Ce-eEEEEeeCCCCHHHHHHHHHHHHHHcCCCCCceEEEEeccccccHHH
Confidence 34567999999999999998764 111 11 12356889999888777777666654 68899999999976556777
Q ss_pred HHHHHHhhccCC
Q 036086 220 LANLRLLVSDMR 231 (355)
Q Consensus 220 ~~~l~~~l~~~~ 231 (355)
++.|-..|..|.
T Consensus 1684 LE~IN~lL~sGE 1695 (2695)
T 4akg_A 1684 LERMNTLLANAD 1695 (2695)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHHccCC
Confidence 777777676554
No 444
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.23 E-value=0.15 Score=43.04 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998754
No 445
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.22 E-value=0.13 Score=45.84 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998764
No 446
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.21 E-value=0.1 Score=44.05 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
..-|.|+|..|+|||||...+.++.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999987643
No 447
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.19 E-value=0.094 Score=44.71 Aligned_cols=26 Identities=12% Similarity=0.127 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
....|.|+|..|+|||||...+.+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998764
No 448
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.19 E-value=0.49 Score=50.32 Aligned_cols=105 Identities=11% Similarity=0.111 Sum_probs=54.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc---ccc----------CCCCceEEEEeCCCCCHH----HHHHHHHH-HHhhcCCC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD---DVK----------SRLPFKVWYSVGKNLDFS----TAVQEIRN-RRNEIPSS 202 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~---~~~----------~~F~~~~wv~vs~~~~~~----~i~~~l~~-~l~~~l~~ 202 (355)
-.+++|+|+.|.|||||.+.+---. ++. ..|+ .++..++-..+.. ....++.. .+...+..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d-~I~~rig~~d~~~~~~stf~~em~~~a~al~la~ 867 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPID-RVFTRLGASDRIMSGESTFFVELSETASILMHAT 867 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCS-BEEEECC---------CHHHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHH-HHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCC
Confidence 3789999999999999999872110 111 0111 1122222111111 11111111 11122356
Q ss_pred CcEEEEEeCCCCC-Chh-----hHHHHHHhhccCCCCCcEEEEecCChhHhhh
Q 036086 203 KRLLFALDDVSHL-NDD-----NLANLRLLVSDMRLVGFYVLVTTHSTSVATM 249 (355)
Q Consensus 203 kr~LlVlDdvw~~-~~~-----~~~~l~~~l~~~~~~gs~IlvTTR~~~va~~ 249 (355)
++-||+||..-.. +.. .|. +...+... .|+.+|++|+..+.+..
T Consensus 868 ~~sLlLLDEp~~Gtd~~dg~~~~~~-il~~L~~~--~g~~vl~~TH~~el~~~ 917 (1022)
T 2o8b_B 868 AHSLVLVDELGRGTATFDGTAIANA-VVKELAET--IKCRTLFSTHYHSLVED 917 (1022)
T ss_dssp TTCEEEEECTTTTSCHHHHHHHHHH-HHHHHHHT--SCCEEEEECCCHHHHHH
T ss_pred CCcEEEEECCCCCCChHHHHHHHHH-HHHHHHhc--CCCEEEEEeCCHHHHHH
Confidence 7889999998532 221 132 23334332 37889999999888766
No 449
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.10 E-value=0.21 Score=41.28 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
....-|.|+|.+|+|||||...+.++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 34456899999999999999998654
No 450
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.04 E-value=0.11 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+++|+|+.|+|||||++.++.-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999873
No 451
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.02 E-value=0.23 Score=44.54 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
.....|+|+|..|+|||||...+....
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 345689999999999999999987654
No 452
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.96 E-value=0.11 Score=50.10 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=24.4
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhc
Q 036086 130 VKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 130 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
+++-++. -..-.+++|+|..|+|||||.+.+.+
T Consensus 147 vld~vl~-i~~Gq~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 147 AINALLT-VGRGQRMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp HHHHHSC-CBTTCEEEEEECTTSSHHHHHHHHHH
T ss_pred EEeeeEE-ecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4454532 22335789999999999999999876
No 453
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.95 E-value=0.12 Score=44.28 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...-|.|+|.+|+|||||...+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999998864
No 454
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.94 E-value=0.13 Score=43.58 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 455
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.93 E-value=0.074 Score=43.71 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=10.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..-|.|+|..|+|||||...+.++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999987654
No 456
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.92 E-value=0.12 Score=43.51 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
..-|.|+|.+|+|||||...+.++.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4468899999999999999987643
No 457
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.92 E-value=0.12 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|.++|+.|+||||+++.+..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446889999999999999999875
No 458
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.91 E-value=0.12 Score=43.62 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...-|.|+|..|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3456899999999999999998754
No 459
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.87 E-value=0.12 Score=43.73 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999988754
No 460
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.87 E-value=0.13 Score=44.22 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
..|.|.|+.|+||||+++.+.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999977
No 461
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.85 E-value=0.12 Score=43.03 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..-|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998764
No 462
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.83 E-value=0.13 Score=50.85 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHhc
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
-.+++|+|+.|+|||||.+.+..
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999876
No 463
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.81 E-value=0.17 Score=43.18 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
--|.|+|.+|+|||||...+.+..
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 457899999999999999987643
No 464
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.81 E-value=0.13 Score=46.85 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHh
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~ 162 (355)
....++|.+.+.+ .+++++|+.|+|||||.+.+.
T Consensus 153 g~gi~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 153 GEGIDELVDYLEG-----FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CTTHHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred CCCHHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence 3457777777653 478999999999999999987
No 465
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.81 E-value=1 Score=49.43 Aligned_cols=95 Identities=15% Similarity=0.191 Sum_probs=0.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEE--EeCCCCCHHHHHH------------------------------
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWY--SVGKNLDFSTAVQ------------------------------ 190 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv--~vs~~~~~~~i~~------------------------------ 190 (355)
.|+|||..|+|||||++.+. +.-+.-...+.+ .--...+...+-+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~---rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~s 1183 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLE---RFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVT 1183 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHT---TSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSC
T ss_pred EEEEECCCCChHHHHHHHHh---cCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCC
Q ss_pred ----------------------------------------HHHHHHhhcCCCCcEEEEEeCCCCC-ChhhHHHHHHhhcc
Q 036086 191 ----------------------------------------EIRNRRNEIPSSKRLLFALDDVSHL-NDDNLANLRLLVSD 229 (355)
Q Consensus 191 ----------------------------------------~l~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~ 229 (355)
++...-+-.+++.+ ++|||..-.. +...=..+...+..
T Consensus 1184 d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~-ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1184 MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPK-ILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCS-EEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCC-EEEEeCccccCCHHHHHHHHHHHHH
Q ss_pred CCCCCcEEEEecC
Q 036086 230 MRLVGFYVLVTTH 242 (355)
Q Consensus 230 ~~~~gs~IlvTTR 242 (355)
.. .|+.+|+.|+
T Consensus 1263 ~~-~~~TvI~IAH 1274 (1321)
T 4f4c_A 1263 AR-EGRTCIVIAH 1274 (1321)
T ss_dssp TS-SSSEEEEECS
T ss_pred Hc-CCCEEEEecc
No 466
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.79 E-value=0.12 Score=49.40 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 036086 144 IHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~~ 164 (355)
|+|+|..|+|||||.+.+...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999998764
No 467
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.77 E-value=0.15 Score=44.26 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 139 NTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 139 ~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.....|.|.|+.|+||||+++.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999873
No 468
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.76 E-value=0.21 Score=44.72 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356899999999999999999864
No 469
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.70 E-value=0.13 Score=47.99 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 126 SVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 126 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..+.|...+.+ .+++|+|+.|+|||||.+.+...
T Consensus 205 gl~~L~~~~~G-----~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 205 GLKPLEEALTG-----RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp THHHHHHHHTT-----SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CHHHHHHhcCC-----CEEEEECCCCccHHHHHHHHhcc
Confidence 34555544421 37899999999999999999873
No 470
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.68 E-value=0.13 Score=50.93 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|..|+|||||.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999875
No 471
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.66 E-value=0.13 Score=49.09 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.-.++.|+|+.|+|||||.+.+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 446899999999999999998876
No 472
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.59 E-value=0.13 Score=49.95 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7899999999999999998864
No 473
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.57 E-value=0.17 Score=44.47 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999987643
No 474
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.55 E-value=0.17 Score=40.80 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=19.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHh
Q 036086 141 VRFIHIVGVSGTDETAIAHRVF 162 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~ 162 (355)
..+..|+|+.|.|||||...++
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999998875
No 475
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.47 E-value=0.13 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.+++|+|+.|+|||||.+.+..-
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999863
No 476
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.46 E-value=0.14 Score=43.01 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.5
Q ss_pred EEEEEE-cCCCccHHHHHHHHhc
Q 036086 142 RFIHIV-GVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~Iv-G~gGiGKTtLa~~v~~ 163 (355)
++|+|+ +-||+||||+|..+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT 24 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH
Confidence 678888 5699999999988765
No 477
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.45 E-value=0.16 Score=43.98 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=19.3
Q ss_pred CeEEEEEEcC-CCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGV-SGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~-gGiGKTtLa~~v~~ 163 (355)
..++|+|++. ||+||||+|..+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~ 27 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAF 27 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHH
Confidence 4578888854 89999999988754
No 478
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.42 E-value=0.14 Score=44.12 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
-|.|+|-+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4779999999999999987653
No 479
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.37 E-value=0.14 Score=51.39 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||++.+..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999976
No 480
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.32 E-value=0.14 Score=43.54 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+|.|.|+.|+||||+++.+..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 481
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.31 E-value=0.41 Score=56.40 Aligned_cols=84 Identities=18% Similarity=0.237 Sum_probs=57.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhhHH
Q 036086 143 FIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEI-PSSKRLLFALDDVSHLNDDNLA 221 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~ 221 (355)
=.-+||.||+||++|++.+.. +.+ ++ .+=+.++++++..+.-.++...++.. .++++..++++|-.-.+...++
T Consensus 1648 haLLVGvgGSGkqSLtrLAa~---i~~-~~-vfqi~i~k~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE 1722 (3245)
T 3vkg_A 1648 HALLIGVSGGGKSVLSRFVAW---MNG-LS-IYTIKVNNNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLE 1722 (3245)
T ss_dssp CEEEEESTTSSHHHHHHHHHH---HTT-CE-EECCC----CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHH
T ss_pred CeEEecCCCCcHHHHHHHHHH---HhC-Ce-eEEEeeeCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHH
Confidence 356899999999999998765 211 11 12367889999988877777776665 7899999999996544666777
Q ss_pred HHHHhhccCC
Q 036086 222 NLRLLVSDMR 231 (355)
Q Consensus 222 ~l~~~l~~~~ 231 (355)
.|-..|..|.
T Consensus 1723 ~IN~lL~sGE 1732 (3245)
T 3vkg_A 1723 RMNTLLAGGE 1732 (3245)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHhccCC
Confidence 7766666554
No 482
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.22 E-value=0.15 Score=45.01 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=19.6
Q ss_pred CCeEEEEEEc-CCCccHHHHHHHHhc
Q 036086 139 NTVRFIHIVG-VSGTDETAIAHRVFT 163 (355)
Q Consensus 139 ~~~~vi~IvG-~gGiGKTtLa~~v~~ 163 (355)
...++|+|+| -||+||||+|..+..
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~ 50 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILAT 50 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHH
Confidence 4567888875 588999999988765
No 483
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.17 E-value=0.12 Score=45.14 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=17.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..|.|.|+.|+||||+++.+.+.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999873
No 484
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.15 E-value=0.19 Score=45.65 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
...|+|+|.+|+|||||...+...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998764
No 485
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.12 E-value=0.16 Score=46.14 Aligned_cols=36 Identities=14% Similarity=0.339 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcC
Q 036086 124 ESSVDSVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 124 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
....+++..++.+ .+++|+|+.|+|||||.+.+...
T Consensus 157 g~gv~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 157 GMGIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp CTTHHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CcCHHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhccc
Confidence 4557778777763 37899999999999999999873
No 486
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.09 E-value=0.15 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4799999999999999999865
No 487
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=90.03 E-value=1 Score=43.57 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 036086 143 FIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 143 vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.|+|+|.+|+|||||...+.+.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999998765
No 488
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.01 E-value=0.15 Score=51.05 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 4899999999999999999875
No 489
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.96 E-value=0.16 Score=44.56 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
..+|.|.|+.|+||||+++.+.+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 490
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.94 E-value=0.16 Score=45.04 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998765
No 491
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.87 E-value=0.16 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||.+.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 4899999999999999999875
No 492
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=89.85 E-value=0.16 Score=45.34 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcC
Q 036086 142 RFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
--|.|+|.+|+|||||...++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999987654
No 493
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.85 E-value=0.16 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.+++|+|+.|+|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999865
No 494
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.78 E-value=0.17 Score=43.80 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 036086 142 RFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 142 ~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
.++-|.|.+|+||||||.++..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4788999999999999988653
No 495
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.76 E-value=0.17 Score=43.31 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Q 036086 141 VRFIHIVGVSGTDETAIAHRVFTD 164 (355)
Q Consensus 141 ~~vi~IvG~gGiGKTtLa~~v~~~ 164 (355)
.--|.|+|..|+|||||...+.+.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 496
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.75 E-value=0.54 Score=54.81 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=47.6
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhc---------
Q 036086 129 SVKNALLRDGNTVRFIHIVGVSGTDETAIAHRVFTDDDVKSRLPFKVWYSVGKNLDFSTAVQEIRNRRNEI--------- 199 (355)
Q Consensus 129 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~l~~~l~~~--------- 199 (355)
.+++.++.. + +-+-++|++|+|||++|+.+.... ..+ ....++.|...+...+.+.+...+...
T Consensus 1258 ~ll~~~l~~--~-~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~ 1330 (2695)
T 4akg_A 1258 KIFYDLLNS--K-RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLL 1330 (2695)
T ss_dssp HHHHHHHHH--T-CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEE
T ss_pred HHHHHHHHC--C-CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcccc
Confidence 345555532 2 346689999999999997766532 122 234567777666666554443332211
Q ss_pred --CCCCcEEEEEeCCC
Q 036086 200 --PSSKRLLFALDDVS 213 (355)
Q Consensus 200 --l~~kr~LlVlDdvw 213 (355)
-.++++++.+||+.
T Consensus 1331 P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1331 PKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp EBSSSSCEEEEEETTT
T ss_pred CCCCCceEEEEecccc
Confidence 14678899999964
No 497
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.71 E-value=0.2 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~ 163 (355)
...+|.|.|+.|+||||+|+.+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 498
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.69 E-value=0.19 Score=44.09 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHhcCc
Q 036086 140 TVRFIHIVGVSGTDETAIAHRVFTDD 165 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v~~~~ 165 (355)
..--|+++|.+|+|||||...+....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468899999999999999987643
No 499
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.67 E-value=0.15 Score=44.16 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=17.5
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 036086 144 IHIVGVSGTDETAIAHRVFT 163 (355)
Q Consensus 144 i~IvG~gGiGKTtLa~~v~~ 163 (355)
|+|.|-||+||||+|..+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHH
Confidence 66789999999999998765
No 500
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=89.66 E-value=0.21 Score=46.70 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=18.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHH
Q 036086 140 TVRFIHIVGVSGTDETAIAHRV 161 (355)
Q Consensus 140 ~~~vi~IvG~gGiGKTtLa~~v 161 (355)
...-|.|+|.||+||||+++++
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4556789999999999999985
Done!