BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036087
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 118 bits (296), Expect = 4e-27, Method: Composition-based stats.
Identities = 55/104 (52%), Positives = 79/104 (75%), Gaps = 3/104 (2%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLRRGSFTE 71
KG W+ EED+K+++ + +G W+ + K L G R GK CR RW N+L P++++ S+TE
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 72 EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
EE++II + H++LGNRWA+IAK LPGRTDN VKN+WNS IK+K+
Sbjct: 65 EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 78/104 (75%), Gaps = 3/104 (2%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLRRGSFTE 71
KG W+ EED+++++H+ +G WS + K L G R GK CR RW N+L P++++ S+TE
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 72 EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
EE++II H+ LGNRWA+IAK LPGRTDN VKN+WNS +++K+
Sbjct: 85 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 112 bits (280), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/104 (50%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLRRGSFTE 71
KG W+ EED++++K + +G WS + K L G R GK CR RW N+L P++++ S+TE
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 72 EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
EE++II H+ LGNRWA+IAK LPGRTDN +KN+WNS +++K+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 112 bits (280), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/104 (50%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLRRGSFTE 71
KG W+ EED++++K + +G WS + K L G R GK CR RW N+L P++++ S+TE
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 72 EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
EE++II H+ LGNRWA+IAK LPGRTDN +KN+WNS +++K+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLRRGSFTE 71
KG W+ EED++++K + +G WS + K L G R GK CR RW N+L P++++ S+TE
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 72 EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
EE++II H+ LGNRWA+IAK LPGRTDN +KN+WNS +++K+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGL--QRCGKSCRLRWINYLRPDLRRGSFT 70
KG ++ ED+ + +++ +G +W P++ R K CR RW N+L P + + ++T
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 71 EEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMP- 129
EE++ I + LG++W+ IAK +PGRTDN +KN WNS I K++ + IL+P
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNS--NHKEILLPD 116
Query: 130 -SHQRAAA 136
S +R AA
Sbjct: 117 RSKKRKAA 124
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRW 56
V K W+PEEDE + ++ G WS + KL R + + RW
Sbjct: 52 VVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP-GRTDNAIKNRW 95
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 71.2 bits (173), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 44/52 (84%)
Query: 64 LRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
+++ S+TEEE++II H+ LGNRWA+IAK LPGRTDN +KN+WNS +++K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 70.9 bits (172), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/53 (54%), Positives = 45/53 (84%)
Query: 63 DLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
++++ S+TEEE++I+ H+ LGNRWA+IAK LPGRTDN +KN+WNS +++K+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTE 71
KK ++PEEDE L + + HG W + R + CR RW NYL P + +T
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 72 EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYW 107
EE+ +++ + G +WA IAK PGRTD +KN W
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 17 SPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQI 76
+ EED KL + + +G W + +L + R + CR RW NY+ P LR ++ EE+ +
Sbjct: 5 TEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 77 IIDVHRILGNRWAQIAKHLPGRTDNEVKNYW 107
+ + G +W +I+K L R+DN ++N W
Sbjct: 64 LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPD 63
KG W+ EED++L+K + +G WS + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 64 LRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNS 109
L +G +T+EE+Q +I + + G RW+ IAKHL GR + + W++
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPD 63
KG W+ EED++++K + +G WS + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 36.2 bits (82), Expect = 0.028, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 64 LRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNS 109
L +G +T+EE+Q +I + + G RW+ IAKHL GR + + W++
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 44.3 bits (103), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPD 63
KG W+ EED+++++ + +G WS + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 64 LRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNS 109
L +G +T+EE+Q +I++ + G RW+ IAKHL GR + + W++
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 15 LWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFT 70
+W EDE L + +G WS + L ++ K C+ RW +L P +++ ++
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 16 WSPEEDEKLLKHITAHGHGSWSSV 39
W+ EEDEKLL + +G+GSW+ +
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 16 WSPEEDEKLLKHITAHGHGSWSSV 39
W+ EEDEKLL + +G+GSW+ +
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|1IGN|A Chain A, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
pdb|1IGN|B Chain B, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
Length = 246
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 62 PDLRRGSFTEEEEQIIIDV------HRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
P + SFT+EE++ I+DV R + +I+ ++P T N +++ + + K+L
Sbjct: 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63
>pdb|3UKG|A Chain A, Crystal Structure Of Rap1DNA COMPLEX
Length = 242
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 66 RGSFTEEEEQIIIDV------HRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
+ SFT+EE++ I+DV R + +I+ ++P T N +++ + + K+L
Sbjct: 1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 56
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63
K W+ EEDEKL K + +G W + R C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63
K W+ EEDEKL K + +G W + R C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 48 CGKSCRLRWINYLRPDLRRGSF----TEEEEQII-----IDVHRILGNRWAQIAKHLPGR 98
GK+ L+WI P+ R+G TE+E + +D+ + G + +PG+
Sbjct: 25 SGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ 84
Query: 99 TDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSS 158
++N+ +KL+ +G+D + + R A+++ N++ ++ T+
Sbjct: 85 V------FYNAS--RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDV 136
Query: 159 QIMSNI--------VSMEIIRPPVLTLPAPTDQFSLLQPTA 191
I+ + + +E++R V P +F +L+ A
Sbjct: 137 PIVIQVNKRDLPDALPVEMVRAVV----DPEGKFPVLEAVA 173
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 69 FTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKT 124
+T EE+++ G RW +I+K + RT +VK+Y K K+ GLD +T
Sbjct: 12 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKET 66
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 71 EEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYW 107
EE+EQ+ V + W +A H P RTD + + W
Sbjct: 14 EEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|3KRE|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazole-succinocarboxamide Synthase
From Ehrlichia Chaffeensis At 1.8a Resolution
Length = 263
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 103 VKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMS 162
+ NY +S + KKL+ KG+ KTH + +QR KI I + + R +
Sbjct: 70 LNNYISSFLMKKLIDKGI--KTHFISLLNQREQLVKKITI-IPIEVVIRNLAAGNFSKRF 126
Query: 163 NIVSMEIIRPPVLTLPAPTDQFS 185
I + P++ D+ S
Sbjct: 127 QIADGTPFKSPIIEFYYKNDELS 149
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 28.1 bits (61), Expect = 7.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 86 NRWAQIAKHLPGRTDNEVKNYW 107
+RWA +A+ + GRT EVK ++
Sbjct: 32 DRWANVARAVEGRTPEEVKKHY 53
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 86 NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILM 128
+ WA I KH PG + ++ N CIK+ + K + +L+
Sbjct: 52 DSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLL 94
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 86 NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILM 128
+ WA I KH PG + ++ N CIK+ + K + +L+
Sbjct: 90 DSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLL 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,430,454
Number of Sequences: 62578
Number of extensions: 415801
Number of successful extensions: 920
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 853
Number of HSP's gapped (non-prelim): 56
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)