Query 036087
Match_columns 344
No_of_seqs 284 out of 1508
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 15:45:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 3.1E-33 1.1E-37 229.2 9.6 105 10-115 1-105 (105)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 2.5E-33 8.5E-38 237.8 8.6 113 2-115 10-128 (128)
3 3zqc_A MYB3; transcription-DNA 100.0 9.1E-33 3.1E-37 235.5 10.7 110 12-122 1-110 (131)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 4.9E-33 1.7E-37 229.5 8.7 104 13-117 1-104 (107)
5 1h89_C C-MYB, MYB proto-oncoge 100.0 2.1E-33 7.3E-38 246.1 5.0 136 11-147 4-140 (159)
6 3osg_A MYB21; transcription-DN 100.0 2.1E-32 7.1E-37 232.0 9.6 106 7-114 5-110 (126)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 5.3E-31 1.8E-35 230.9 7.2 112 3-115 42-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 2.6E-24 8.8E-29 182.3 5.0 108 39-147 1-109 (128)
9 2dim_A Cell division cycle 5-l 99.8 6.5E-22 2.2E-26 151.5 2.1 67 7-74 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 3.8E-18 1.3E-22 158.3 6.7 106 8-114 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 1.8E-17 6.1E-22 128.6 5.2 58 53-111 10-67 (73)
12 2juh_A Telomere binding protei 99.7 5.9E-18 2E-22 143.0 2.4 82 8-90 12-103 (121)
13 2dim_A Cell division cycle 5-l 99.7 6.3E-17 2.2E-21 123.7 6.8 65 61-125 4-69 (70)
14 2d9a_A B-MYB, MYB-related prot 99.7 1.7E-17 5.9E-22 123.1 3.3 58 7-65 2-59 (60)
15 1gvd_A MYB proto-oncogene prot 99.7 2E-17 6.9E-22 119.4 2.9 52 11-63 1-52 (52)
16 2roh_A RTBP1, telomere binding 99.7 4.9E-17 1.7E-21 137.6 5.1 79 8-87 26-114 (122)
17 2cu7_A KIAA1915 protein; nucle 99.7 1.8E-16 6.3E-21 121.9 7.6 65 60-125 3-67 (72)
18 2din_A Cell division cycle 5-l 99.7 1.6E-16 5.4E-21 120.1 7.1 60 59-119 2-61 (66)
19 1guu_A C-MYB, MYB proto-oncoge 99.6 3E-17 1E-21 118.4 2.0 52 11-63 1-52 (52)
20 1ity_A TRF1; helix-turn-helix, 99.6 4.7E-17 1.6E-21 124.1 2.6 63 8-70 5-68 (69)
21 3osg_A MYB21; transcription-DN 99.6 3.2E-16 1.1E-20 132.4 5.2 87 61-147 6-92 (126)
22 1gv2_A C-MYB, MYB proto-oncoge 99.6 2.7E-16 9.3E-21 128.4 4.4 85 63-147 1-86 (105)
23 2d9a_A B-MYB, MYB-related prot 99.6 6.6E-16 2.3E-20 114.5 6.0 56 61-116 3-59 (60)
24 1x41_A Transcriptional adaptor 99.6 4.6E-16 1.6E-20 115.8 2.6 55 8-63 3-57 (60)
25 1guu_A C-MYB, MYB proto-oncoge 99.6 2.4E-15 8.1E-20 108.4 6.2 50 64-113 1-51 (52)
26 1ity_A TRF1; helix-turn-helix, 99.6 4.4E-15 1.5E-19 113.2 7.6 62 59-120 3-67 (69)
27 3sjm_A Telomeric repeat-bindin 99.6 3.7E-16 1.3E-20 118.1 1.6 57 9-65 7-64 (64)
28 1gvd_A MYB proto-oncogene prot 99.6 3.8E-15 1.3E-19 107.4 6.0 50 64-113 1-51 (52)
29 2k9n_A MYB24; R2R3 domain, DNA 99.6 1.1E-15 3.8E-20 125.6 3.3 82 66-147 1-83 (107)
30 3zqc_A MYB3; transcription-DNA 99.5 2.4E-15 8.1E-20 127.8 4.3 82 66-147 2-84 (131)
31 1w0t_A Telomeric repeat bindin 99.5 1.3E-14 4.3E-19 105.2 6.4 49 65-113 1-52 (53)
32 2yum_A ZZZ3 protein, zinc fing 99.5 1E-15 3.6E-20 118.3 0.6 61 7-68 2-67 (75)
33 1x41_A Transcriptional adaptor 99.5 1.2E-14 4.2E-19 108.0 6.1 53 61-113 3-56 (60)
34 1w0t_A Telomeric repeat bindin 99.5 2.2E-15 7.4E-20 109.3 1.8 50 12-61 1-51 (53)
35 2din_A Cell division cycle 5-l 99.5 8.6E-16 2.9E-20 116.1 -1.0 58 7-67 3-60 (66)
36 2yum_A ZZZ3 protein, zinc fing 99.5 2.1E-14 7.2E-19 110.9 6.4 58 61-118 3-66 (75)
37 2elk_A SPCC24B10.08C protein; 99.5 4.7E-15 1.6E-19 109.7 2.5 52 9-60 5-56 (58)
38 3sjm_A Telomeric repeat-bindin 99.5 3.7E-14 1.3E-18 107.1 6.6 52 64-115 9-63 (64)
39 2cu7_A KIAA1915 protein; nucle 99.5 6.1E-15 2.1E-19 113.4 0.7 58 7-66 3-60 (72)
40 2elk_A SPCC24B10.08C protein; 99.5 8.9E-14 3E-18 102.8 6.5 50 62-111 5-56 (58)
41 2ltp_A Nuclear receptor corepr 99.1 2E-14 6.9E-19 115.1 0.0 57 58-114 8-64 (89)
42 2aje_A Telomere repeat-binding 99.4 1.1E-13 3.7E-18 114.3 3.8 79 7-85 7-94 (105)
43 2ckx_A NGTRF1, telomere bindin 99.4 2.6E-13 8.9E-18 107.6 3.8 69 14-83 1-79 (83)
44 2llk_A Cyclin-D-binding MYB-li 99.4 2.1E-13 7.3E-18 105.7 2.9 55 8-66 18-72 (73)
45 2juh_A Telomere binding protei 99.3 5E-13 1.7E-17 112.9 4.4 81 60-140 11-102 (121)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.3E-12 4.4E-17 101.2 6.3 52 62-113 14-69 (73)
47 2yus_A SWI/SNF-related matrix- 99.3 4.4E-13 1.5E-17 105.3 2.3 50 8-59 13-62 (79)
48 2yus_A SWI/SNF-related matrix- 99.3 2.8E-12 9.5E-17 100.7 4.8 48 63-110 15-62 (79)
49 2roh_A RTBP1, telomere binding 99.3 3.3E-12 1.1E-16 108.0 5.4 79 61-139 26-115 (122)
50 2ltp_A Nuclear receptor corepr 98.9 4.5E-13 1.5E-17 107.2 0.0 54 7-62 10-63 (89)
51 1ign_A Protein (RAP1); RAP1,ye 99.2 5.8E-12 2E-16 117.0 6.5 78 62-143 4-87 (246)
52 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1.2E-12 4.3E-17 101.3 0.8 55 6-61 11-68 (73)
53 2aje_A Telomere repeat-binding 99.2 2.6E-11 9E-16 100.0 7.6 53 61-113 8-65 (105)
54 2ckx_A NGTRF1, telomere bindin 99.2 2.6E-11 8.9E-16 96.1 6.6 48 67-114 1-53 (83)
55 1x58_A Hypothetical protein 49 99.2 3.8E-11 1.3E-15 90.0 6.1 49 65-113 7-58 (62)
56 2cjj_A Radialis; plant develop 99.1 6.1E-11 2.1E-15 95.8 6.8 50 65-114 7-60 (93)
57 2eqr_A N-COR1, N-COR, nuclear 98.9 2.7E-09 9.2E-14 79.5 6.7 48 65-112 11-58 (61)
58 2cjj_A Radialis; plant develop 98.9 2.1E-10 7.2E-15 92.7 0.5 48 12-60 7-57 (93)
59 3hm5_A DNA methyltransferase 1 98.9 3.6E-09 1.2E-13 85.5 6.8 67 49-119 17-88 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.8 4.7E-09 1.6E-13 80.9 6.2 56 63-119 5-64 (72)
61 2eqr_A N-COR1, N-COR, nuclear 98.8 2.1E-09 7.3E-14 80.0 2.9 55 4-60 3-57 (61)
62 1x58_A Hypothetical protein 49 98.7 3E-09 1E-13 79.8 1.9 49 11-61 6-57 (62)
63 2iw5_B Protein corest, REST co 98.6 4.8E-08 1.6E-12 90.2 6.4 49 65-113 132-180 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.5 2.6E-08 9E-13 76.8 0.8 51 9-61 4-57 (72)
65 1wgx_A KIAA1903 protein; MYB D 98.4 1.9E-07 6.6E-12 72.2 5.2 48 66-113 8-59 (73)
66 2xag_B REST corepressor 1; ami 98.4 1.3E-07 4.5E-12 95.8 5.1 47 67-113 381-427 (482)
67 1fex_A TRF2-interacting telome 98.3 9.4E-08 3.2E-12 70.9 0.8 48 13-61 2-58 (59)
68 1fex_A TRF2-interacting telome 98.3 8.6E-07 2.9E-11 65.7 5.4 47 66-112 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.2 2E-07 6.8E-12 72.1 1.1 48 13-61 8-58 (73)
70 2iw5_B Protein corest, REST co 98.2 3.1E-07 1E-11 84.8 2.5 50 10-61 130-179 (235)
71 2yqk_A Arginine-glutamic acid 98.0 9.4E-06 3.2E-10 60.7 6.6 51 61-111 4-55 (63)
72 1ofc_X ISWI protein; nuclear p 98.0 8.9E-06 3E-10 78.2 7.8 100 14-114 111-276 (304)
73 4eef_G F-HB80.4, designed hema 97.9 2.9E-06 1E-10 65.5 1.5 43 66-108 20-66 (74)
74 1ug2_A 2610100B20RIK gene prod 97.9 1.6E-05 5.3E-10 63.7 5.5 49 66-114 33-84 (95)
75 4iej_A DNA methyltransferase 1 97.8 4.5E-05 1.5E-09 61.4 6.9 61 54-118 22-87 (93)
76 4eef_G F-HB80.4, designed hema 97.7 5E-06 1.7E-10 64.2 0.5 44 13-57 20-66 (74)
77 2lr8_A CAsp8-associated protei 96.9 4.7E-06 1.6E-10 63.4 0.0 45 68-113 16-63 (70)
78 2yqk_A Arginine-glutamic acid 97.7 2.1E-05 7E-10 58.8 2.7 50 7-58 3-53 (63)
79 4a69_C Nuclear receptor corepr 97.5 0.00016 5.6E-09 58.1 6.0 45 66-110 43-87 (94)
80 2crg_A Metastasis associated p 97.5 0.00023 7.7E-09 54.2 6.4 44 66-109 8-52 (70)
81 2xag_B REST corepressor 1; ami 97.4 5.2E-05 1.8E-09 76.9 2.4 47 11-59 378-424 (482)
82 3hm5_A DNA methyltransferase 1 97.3 5.2E-05 1.8E-09 61.1 1.4 49 11-60 28-80 (93)
83 2ebi_A DNA binding protein GT- 97.0 0.00062 2.1E-08 53.2 4.6 49 66-114 4-66 (86)
84 2ebi_A DNA binding protein GT- 97.0 7.5E-05 2.6E-09 58.5 -1.1 50 11-60 2-63 (86)
85 4a69_C Nuclear receptor corepr 96.9 0.00031 1.1E-08 56.4 1.8 44 13-58 43-86 (94)
86 4b4c_A Chromodomain-helicase-D 96.8 0.0019 6.5E-08 57.8 6.9 46 68-113 136-196 (211)
87 2y9y_A Imitation switch protei 96.8 0.0027 9.1E-08 62.6 7.9 101 14-115 124-293 (374)
88 2crg_A Metastasis associated p 96.7 0.00074 2.5E-08 51.3 2.8 45 12-58 7-52 (70)
89 1ug2_A 2610100B20RIK gene prod 96.3 0.0011 3.9E-08 53.0 1.3 50 9-59 29-80 (95)
90 2lr8_A CAsp8-associated protei 95.1 0.00097 3.3E-08 50.7 0.0 48 12-61 13-62 (70)
91 4iej_A DNA methyltransferase 1 94.5 0.012 4.2E-07 47.2 1.5 49 11-60 28-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 92.7 0.27 9.2E-06 36.8 6.1 48 64-111 5-57 (64)
93 1ofc_X ISWI protein; nuclear p 91.4 0.31 1E-05 46.8 6.4 48 66-113 110-158 (304)
94 4b4c_A Chromodomain-helicase-D 90.8 0.35 1.2E-05 42.9 5.9 50 64-113 5-59 (211)
95 2xb0_X Chromo domain-containin 90.5 0.12 4.1E-06 48.8 2.7 28 14-41 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 90.2 0.13 4.5E-06 38.5 2.1 50 10-59 4-56 (64)
97 2xb0_X Chromo domain-containin 74.6 6 0.00021 37.1 6.8 48 66-113 3-55 (270)
98 2o8x_A Probable RNA polymerase 58.5 15 0.0005 25.7 4.7 43 69-113 16-58 (70)
99 1ku3_A Sigma factor SIGA; heli 54.2 19 0.00064 25.9 4.7 43 69-113 11-57 (73)
100 2rq5_A Protein jumonji; develo 54.0 2.9 9.8E-05 34.7 0.2 46 34-82 64-113 (121)
101 2p7v_B Sigma-70, RNA polymeras 49.7 21 0.0007 25.3 4.2 40 73-113 9-52 (68)
102 2li6_A SWI/SNF chromatin-remod 47.1 3.9 0.00013 33.3 -0.1 39 23-62 53-98 (116)
103 3cz6_A DNA-binding protein RAP 45.6 17 0.00057 31.9 3.7 29 9-40 110-146 (168)
104 2y9y_A Imitation switch protei 44.4 36 0.0012 33.4 6.2 48 66-113 123-172 (374)
105 2li6_A SWI/SNF chromatin-remod 44.3 17 0.00058 29.4 3.4 38 76-113 53-98 (116)
106 3i4p_A Transcriptional regulat 44.3 21 0.00072 29.8 4.1 45 72-117 3-48 (162)
107 2lm1_A Lysine-specific demethy 43.7 36 0.0012 26.8 5.2 38 76-113 48-97 (107)
108 1ig6_A MRF-2, modulator recogn 43.5 6 0.00021 31.5 0.5 41 22-62 36-87 (107)
109 2jrz_A Histone demethylase jar 42.5 32 0.0011 27.8 4.8 38 76-113 44-93 (117)
110 3hug_A RNA polymerase sigma fa 41.8 35 0.0012 25.6 4.7 41 72-113 40-80 (92)
111 1kkx_A Transcription regulator 41.7 23 0.00078 29.1 3.8 38 77-114 53-98 (123)
112 2cxy_A BAF250B subunit, HBAF25 38.4 42 0.0014 27.4 4.9 39 76-114 55-105 (125)
113 2eqy_A RBP2 like, jumonji, at 38.2 42 0.0015 27.3 4.9 38 76-113 46-95 (122)
114 2jrz_A Histone demethylase jar 35.6 9.3 0.00032 31.1 0.5 40 23-62 44-93 (117)
115 1x3u_A Transcriptional regulat 33.8 82 0.0028 22.3 5.5 42 69-113 17-58 (79)
116 1c20_A DEAD ringer protein; DN 33.4 56 0.0019 26.7 5.0 40 75-114 55-107 (128)
117 1c20_A DEAD ringer protein; DN 32.8 10 0.00036 31.2 0.3 40 23-62 56-106 (128)
118 2rq5_A Protein jumonji; develo 32.8 51 0.0017 27.0 4.5 76 13-114 7-97 (121)
119 1tty_A Sigma-A, RNA polymerase 32.7 61 0.0021 24.0 4.7 40 73-113 22-65 (87)
120 2k27_A Paired box protein PAX- 31.7 1.3E+02 0.0044 24.4 7.0 66 14-84 24-99 (159)
121 1or7_A Sigma-24, RNA polymeras 31.7 69 0.0024 26.3 5.4 29 84-113 155-183 (194)
122 1u78_A TC3 transposase, transp 31.3 1.8E+02 0.0062 22.4 8.1 88 14-107 5-100 (141)
123 2cxy_A BAF250B subunit, HBAF25 31.2 11 0.00039 30.9 0.3 40 23-62 55-104 (125)
124 2kk0_A AT-rich interactive dom 31.1 53 0.0018 27.5 4.5 39 76-114 68-119 (145)
125 3ulq_B Transcriptional regulat 30.5 91 0.0031 23.6 5.4 46 65-113 26-71 (90)
126 1k78_A Paired box protein PAX5 30.3 1.3E+02 0.0044 24.0 6.7 67 14-85 31-107 (149)
127 2kk0_A AT-rich interactive dom 29.6 18 0.00061 30.5 1.3 54 23-76 68-134 (145)
128 2e1c_A Putative HTH-type trans 29.6 63 0.0022 27.3 4.8 46 71-117 26-72 (171)
129 2dbb_A Putative HTH-type trans 29.1 76 0.0026 25.6 5.1 45 72-117 9-54 (151)
130 2jxj_A Histone demethylase jar 28.9 29 0.00099 26.8 2.3 38 76-113 40-89 (96)
131 3c57_A Two component transcrip 28.3 86 0.0029 23.7 5.0 43 68-113 27-69 (95)
132 1je8_A Nitrate/nitrite respons 27.9 85 0.0029 23.0 4.8 43 68-113 21-63 (82)
133 1fse_A GERE; helix-turn-helix 27.9 91 0.0031 21.6 4.8 44 67-113 10-53 (74)
134 2q1z_A RPOE, ECF SIGE; ECF sig 27.2 46 0.0016 27.3 3.4 29 84-113 150-178 (184)
135 2yqf_A Ankyrin-1; death domain 26.3 86 0.003 24.7 4.8 35 70-105 14-48 (111)
136 1xsv_A Hypothetical UPF0122 pr 26.1 1.1E+02 0.0038 24.0 5.4 40 73-113 29-68 (113)
137 2cyy_A Putative HTH-type trans 25.5 91 0.0031 25.3 4.9 45 72-117 7-52 (151)
138 2jpc_A SSRB; DNA binding prote 24.6 1.1E+02 0.0039 20.4 4.6 38 74-113 3-40 (61)
139 3mzy_A RNA polymerase sigma-H 24.5 86 0.0029 24.6 4.5 29 84-113 123-151 (164)
140 1rp3_A RNA polymerase sigma fa 24.1 1.1E+02 0.0037 25.8 5.4 36 77-113 195-230 (239)
141 2of5_H Leucine-rich repeat and 22.3 89 0.003 25.1 4.2 31 74-105 13-43 (118)
142 3i4p_A Transcriptional regulat 22.0 16 0.00053 30.7 -0.6 42 19-62 3-44 (162)
143 2of5_A Death domain-containing 21.2 1E+02 0.0034 24.8 4.2 40 62-105 15-54 (114)
144 2o71_A Death domain-containing 20.9 1.1E+02 0.0036 24.7 4.3 28 76-104 26-53 (115)
145 3cz6_A DNA-binding protein RAP 20.3 61 0.0021 28.3 2.8 27 52-78 99-126 (168)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=3.1e-33 Score=229.22 Aligned_cols=105 Identities=49% Similarity=0.922 Sum_probs=99.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCchH
Q 036087 10 KVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWA 89 (344)
Q Consensus 10 ~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~ 89 (344)
.+++|+||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 36899999999999999999999989999999998 99999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHhhhhh
Q 036087 90 QIAKHLPGRTDNEVKNYWNSCIKKKL 115 (344)
Q Consensus 90 ~IAk~lpgRT~~qcknRW~~~lkkkl 115 (344)
.||+.|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.98 E-value=2.5e-33 Score=237.75 Aligned_cols=113 Identities=47% Similarity=0.920 Sum_probs=102.0
Q ss_pred CCCCCcc------CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHH
Q 036087 2 GHRCCSK------QKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQ 75 (344)
Q Consensus 2 g~~c~~K------p~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~ 75 (344)
+.+|+.+ |.+++|+||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||+
T Consensus 10 ~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~ 88 (128)
T 1h8a_C 10 DVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDR 88 (128)
T ss_dssp ------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHH
Confidence 3478776 889999999999999999999999888999999998 999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhhh
Q 036087 76 IIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115 (344)
Q Consensus 76 ~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl 115 (344)
+|++++.+||++|..||+.|||||+++|++||+.++++++
T Consensus 89 ~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 89 IIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999988753
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=9.1e-33 Score=235.51 Aligned_cols=110 Identities=35% Similarity=0.672 Sum_probs=104.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHH
Q 036087 12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQI 91 (344)
Q Consensus 12 kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~I 91 (344)
.||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|..|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 379999999999999999999889999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHhhhhhhhCCCCc
Q 036087 92 AKHLPGRTDNEVKNYWNSCIKKKLMSKGLDP 122 (344)
Q Consensus 92 Ak~lpgRT~~qcknRW~~~lkkkl~~~~~~~ 122 (344)
|++|||||+++|++||+.++++++....++.
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 9999999999999999999999987766543
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.98 E-value=4.9e-33 Score=229.55 Aligned_cols=104 Identities=30% Similarity=0.585 Sum_probs=100.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHh
Q 036087 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIA 92 (344)
Q Consensus 13 kg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA 92 (344)
||+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHhhhhhhh
Q 036087 93 KHLPGRTDNEVKNYWNSCIKKKLMS 117 (344)
Q Consensus 93 k~lpgRT~~qcknRW~~~lkkkl~~ 117 (344)
+.|||||+++|++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999886554
No 5
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=2.1e-33 Score=246.11 Aligned_cols=136 Identities=27% Similarity=0.559 Sum_probs=91.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCC-chH
Q 036087 11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGN-RWA 89 (344)
Q Consensus 11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~ 89 (344)
+++++||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 6789999999999999999999889999999998 99999999999999999999999999999999999999996 699
Q ss_pred HHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhcccccccccccC
Q 036087 90 QIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIACNIQLP 147 (344)
Q Consensus 90 ~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~~~~~~~~~p 147 (344)
.||+.|||||+.||++||.++|.+.+.+..|+++++.+|..+....+.+|..++..+|
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~ 140 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLP 140 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTST
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCC
Confidence 9999999999999999999999999999999999999998888888889987777655
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=2.1e-32 Score=232.02 Aligned_cols=106 Identities=36% Similarity=0.698 Sum_probs=101.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 036087 7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGN 86 (344)
Q Consensus 7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~ 86 (344)
.+++.++|+||+|||++|+++|++||. +|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999998 9999999998 99999999999999999999999999999999999999999
Q ss_pred chHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 036087 87 RWAQIAKHLPGRTDNEVKNYWNSCIKKK 114 (344)
Q Consensus 87 kW~~IAk~lpgRT~~qcknRW~~~lkkk 114 (344)
+|..||+.|||||+++|++||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988774
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=5.3e-31 Score=230.89 Aligned_cols=112 Identities=46% Similarity=0.897 Sum_probs=105.0
Q ss_pred CCCCcc------CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHH
Q 036087 3 HRCCSK------QKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQI 76 (344)
Q Consensus 3 ~~c~~K------p~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~ 76 (344)
.+|.++ |.+++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+
T Consensus 42 ~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~ 120 (159)
T 1h89_C 42 VQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 120 (159)
T ss_dssp -CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHH
T ss_pred HHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHH
Confidence 467665 889999999999999999999999878999999998 9999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhhh
Q 036087 77 IIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115 (344)
Q Consensus 77 Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl 115 (344)
|++++.+||++|..||+.|||||+++|++||+.++++++
T Consensus 121 L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 121 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999988764
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.89 E-value=2.6e-24 Score=182.28 Aligned_cols=108 Identities=24% Similarity=0.523 Sum_probs=81.7
Q ss_pred cccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCC-chHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 036087 39 VPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGN-RWAQIAKHLPGRTDNEVKNYWNSCIKKKLMS 117 (344)
Q Consensus 39 IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~ 117 (344)
||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||.++|.+.+.+
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788898 99999999999999999999999999999999999999995 6999999999999999999999999999999
Q ss_pred CCCCccccccCchhhhhhcccccccccccC
Q 036087 118 KGLDPKTHILMPSHQRAAASSKIACNIQLP 147 (344)
Q Consensus 118 ~~~~~~e~~ll~~~q~~~~~~~~~~~~~~p 147 (344)
+.|+++|+.+|..+....+..|..++..+|
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~ 109 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLP 109 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGST
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCC
Confidence 999999999998888888889988777655
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.5e-22 Score=151.51 Aligned_cols=67 Identities=27% Similarity=0.640 Sum_probs=64.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHH
Q 036087 7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEE 74 (344)
Q Consensus 7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED 74 (344)
..+.+++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 46789999999999999999999999779999999999 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.72 E-value=3.8e-18 Score=158.34 Aligned_cols=106 Identities=18% Similarity=0.313 Sum_probs=92.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCC-----ccccccccccccCcccccchhhcccCCCCC-----------------
Q 036087 8 KQKVKKGLWSPEEDEKLLKHITAHGHGS-----WSSVPKLAGLQRCGKSCRLRWINYLRPDLR----------------- 65 (344)
Q Consensus 8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~-----W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lk----------------- 65 (344)
.+.+++++||+|||++|+++|++||..+ |..||+.|+ |||+.|||.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4678899999999999999999998743 999999999 99999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHh-c------------------------------------------------
Q 036087 66 ------------RGSFTEEEEQIIIDVHRI-L------------------------------------------------ 84 (344)
Q Consensus 66 ------------kg~WT~EED~~Ll~lv~~-~------------------------------------------------ 84 (344)
+..||.+||-.|...+.+ +
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 1
Q ss_pred -----C----CchHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 036087 85 -----G----NRWAQIAKHLPGRTDNEVKNYWNSCIKKK 114 (344)
Q Consensus 85 -----G----~kW~~IAk~lpgRT~~qcknRW~~~lkkk 114 (344)
| ..|.+||+.+|+||.+++|+||..+++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 1 16999999999999999999999888765
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-17 Score=128.65 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=47.3
Q ss_pred cchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHh
Q 036087 53 RLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCI 111 (344)
Q Consensus 53 r~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~l 111 (344)
.-||.++|+|++++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 999999999998654
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.68 E-value=5.9e-18 Score=142.99 Aligned_cols=82 Identities=21% Similarity=0.374 Sum_probs=77.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccCcccccchhhcccC-----CCCCCC-CCCHHHHHHH
Q 036087 8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLA----GLQRCGKSCRLRWINYLR-----PDLRRG-SFTEEEEQII 77 (344)
Q Consensus 8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~----~~~Rt~~QCr~Rw~n~L~-----p~lkkg-~WT~EED~~L 77 (344)
+++.++++||+|||+.|+++|++||.++|..|++.+ . +||+.+|++||+++|+ |.++++ +|+++|+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 478899999999999999999999999999999975 5 8999999999999998 999999 9999999999
Q ss_pred HHHHHhcCCchHH
Q 036087 78 IDVHRILGNRWAQ 90 (344)
Q Consensus 78 l~lv~~~G~kW~~ 90 (344)
++++..+|++|.+
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999986
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6.3e-17 Score=123.69 Aligned_cols=65 Identities=17% Similarity=0.365 Sum_probs=62.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCcccc
Q 036087 61 RPDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTH 125 (344)
Q Consensus 61 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~ 125 (344)
.|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.|||+||+++|++.++++.|+++++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 7999999999999999999999999999999999998876
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=1.7e-17 Score=123.10 Aligned_cols=58 Identities=26% Similarity=0.494 Sum_probs=54.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCC
Q 036087 7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLR 65 (344)
Q Consensus 7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lk 65 (344)
..|.+++++||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 35789999999999999999999999779999999998 99999999999999999875
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=2e-17 Score=119.38 Aligned_cols=52 Identities=42% Similarity=0.821 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCC
Q 036087 11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63 (344)
Q Consensus 11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~ 63 (344)
+++|+||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999888999999998 999999999999999984
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.66 E-value=4.9e-17 Score=137.57 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=73.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccCcccccchhhccc-----CCCCCCCCCCHHH-HHHH
Q 036087 8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLA----GLQRCGKSCRLRWINYL-----RPDLRRGSFTEEE-EQII 77 (344)
Q Consensus 8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~----~~~Rt~~QCr~Rw~n~L-----~p~lkkg~WT~EE-D~~L 77 (344)
+++.++++||+|||+.|+++|++||.++|..|++.+ . +||+.||++||++++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 467789999999999999999999999999999864 4 899999999999999 8999999999999 8999
Q ss_pred HHHHHhcCCc
Q 036087 78 IDVHRILGNR 87 (344)
Q Consensus 78 l~lv~~~G~k 87 (344)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999974
No 17
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=1.8e-16 Score=121.92 Aligned_cols=65 Identities=29% Similarity=0.383 Sum_probs=59.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCcccc
Q 036087 60 LRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTH 125 (344)
Q Consensus 60 L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~ 125 (344)
++|.+++++||+|||++|++++.+||.+|..||++|+|||++|||+||+.++++.++. ++++++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 5789999999999999999999999999999999999999999999999999998766 6766554
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=120.13 Aligned_cols=60 Identities=17% Similarity=0.357 Sum_probs=57.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCC
Q 036087 59 YLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG 119 (344)
Q Consensus 59 ~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~ 119 (344)
+|+|.+++++||+|||++|++++++||.+|..||+ ++|||++|||+||+.+|++.+.+..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999887654
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.64 E-value=3e-17 Score=118.39 Aligned_cols=52 Identities=33% Similarity=0.698 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCC
Q 036087 11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63 (344)
Q Consensus 11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~ 63 (344)
+++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999989999999998 999999999999999984
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=4.7e-17 Score=124.14 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=58.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccCcccccchhhcccCCCCCCCCCC
Q 036087 8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGL-QRCGKSCRLRWINYLRPDLRRGSFT 70 (344)
Q Consensus 8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~-~Rt~~QCr~Rw~n~L~p~lkkg~WT 70 (344)
+++.++++||+|||++|+++|++||.++|..||..|++ +|++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 57788999999999999999999998899999999975 8999999999999999999987654
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.61 E-value=3.2e-16 Score=132.43 Aligned_cols=87 Identities=15% Similarity=0.318 Sum_probs=79.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhccccc
Q 036087 61 RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKI 140 (344)
Q Consensus 61 ~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~~~ 140 (344)
.+..++++||+|||++|+++|.+||.+|..||+.|+|||..||+.||.++|.+.+.++.|+++|+.+|..+....+..|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999888887788898
Q ss_pred ccccccC
Q 036087 141 ACNIQLP 147 (344)
Q Consensus 141 ~~~~~~p 147 (344)
.++..+|
T Consensus 86 ~Ia~~l~ 92 (126)
T 3osg_A 86 IIAKFFP 92 (126)
T ss_dssp HHHTTST
T ss_pred HHHHHcC
Confidence 8777655
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.61 E-value=2.7e-16 Score=128.35 Aligned_cols=85 Identities=24% Similarity=0.479 Sum_probs=78.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-chHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhcccccc
Q 036087 63 DLRRGSFTEEEEQIIIDVHRILGN-RWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIA 141 (344)
Q Consensus 63 ~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~~~~ 141 (344)
.+++++||+|||++|+++|.+||. +|..||+.|+|||+.||+.||.++|.+.+.++.|+++++.+|..+....+.+|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 368999999999999999999996 6999999999999999999999999999999999999999998888888888987
Q ss_pred cccccC
Q 036087 142 CNIQLP 147 (344)
Q Consensus 142 ~~~~~p 147 (344)
++..+|
T Consensus 81 Ia~~l~ 86 (105)
T 1gv2_A 81 IAKLLP 86 (105)
T ss_dssp HHTTCT
T ss_pred HHHHcC
Confidence 777654
No 23
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=6.6e-16 Score=114.53 Aligned_cols=56 Identities=23% Similarity=0.458 Sum_probs=52.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhhhhh
Q 036087 61 RPDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLM 116 (344)
Q Consensus 61 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~ 116 (344)
+|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.|||+||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5788999999999999999999999 6999999999999999999999999988653
No 24
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=4.6e-16 Score=115.76 Aligned_cols=55 Identities=18% Similarity=0.495 Sum_probs=51.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCC
Q 036087 8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63 (344)
Q Consensus 8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~ 63 (344)
.+.+++++||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 4789999999999999999999999779999999998 999999999999999865
No 25
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.57 E-value=2.4e-15 Score=108.38 Aligned_cols=50 Identities=28% Similarity=0.556 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC-chHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 64 LRRGSFTEEEEQIIIDVHRILGN-RWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 64 lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 899999999999999999999999875
No 26
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.57 E-value=4.4e-15 Score=113.22 Aligned_cols=62 Identities=26% Similarity=0.369 Sum_probs=56.3
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCC--CCCHHHHHHHHHHHhhhhhhhCCC
Q 036087 59 YLRPDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLP--GRTDNEVKNYWNSCIKKKLMSKGL 120 (344)
Q Consensus 59 ~L~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lp--gRT~~qcknRW~~~lkkkl~~~~~ 120 (344)
..++..++++||+|||++|+++|.+|| ++|..||+.|+ |||+.|||+||+++|++.+.+...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 346677899999999999999999999 69999999999 999999999999999998876543
No 27
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.57 E-value=3.7e-16 Score=118.13 Aligned_cols=57 Identities=25% Similarity=0.439 Sum_probs=49.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc-cccCcccccchhhcccCCCCC
Q 036087 9 QKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAG-LQRCGKSCRLRWINYLRPDLR 65 (344)
Q Consensus 9 p~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~-~~Rt~~QCr~Rw~n~L~p~lk 65 (344)
...+|++||+|||++|+++|++||.++|..||+.++ .+|++.||++||+++++|.++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 345789999999999999999999989999999754 289999999999999998764
No 28
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.56 E-value=3.8e-15 Score=107.39 Aligned_cols=50 Identities=36% Similarity=0.744 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC-chHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 64 LRRGSFTEEEEQIIIDVHRILGN-RWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 64 lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999998875
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.55 E-value=1.1e-15 Score=125.59 Aligned_cols=82 Identities=20% Similarity=0.330 Sum_probs=75.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-chHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhccccccccc
Q 036087 66 RGSFTEEEEQIIIDVHRILGN-RWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIACNI 144 (344)
Q Consensus 66 kg~WT~EED~~Ll~lv~~~G~-kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~~~~~~~ 144 (344)
++.||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.+.++.|+++|+.+|..+....++.|..++.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 589999999999999999995 8999999999999999999999999999999999999999998888888888877776
Q ss_pred ccC
Q 036087 145 QLP 147 (344)
Q Consensus 145 ~~p 147 (344)
.+|
T Consensus 81 ~l~ 83 (107)
T 2k9n_A 81 FLK 83 (107)
T ss_dssp HHS
T ss_pred HCC
Confidence 654
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.54 E-value=2.4e-15 Score=127.78 Aligned_cols=82 Identities=20% Similarity=0.408 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhccccccccc
Q 036087 66 RGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIACNI 144 (344)
Q Consensus 66 kg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~~~~~~~ 144 (344)
+|+||+|||++|+++|.+|| .+|..||..|||||+.||+.||.++|.+.+.++.|+++++.+|..+....+..|..++.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 78999999999999999999 67999999999999999999999999999999999999999998888888889988877
Q ss_pred ccC
Q 036087 145 QLP 147 (344)
Q Consensus 145 ~~p 147 (344)
.+|
T Consensus 82 ~l~ 84 (131)
T 3zqc_A 82 LIP 84 (131)
T ss_dssp TST
T ss_pred HcC
Confidence 765
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=1.3e-14 Score=105.21 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCC--CCCHHHHHHHHHHHhhh
Q 036087 65 RRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLP--GRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 65 kkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lp--gRT~~qcknRW~~~lkk 113 (344)
++++||+|||++|+++|.+|| ++|..||..++ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 69999999999 99999999999999875
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1e-15 Score=118.28 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=56.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-----CCccccccccccccCcccccchhhcccCCCCCCCC
Q 036087 7 SKQKVKKGLWSPEEDEKLLKHITAHGH-----GSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGS 68 (344)
Q Consensus 7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~-----~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~ 68 (344)
++|.++++.||+|||++|+++|.+||. .+|..||+.|+ +||+.||+.||.++|.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999995 58999999999 99999999999999998777654
No 33
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=1.2e-14 Score=108.03 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 61 RPDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 61 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
.+.+.+++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||.++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3578899999999999999999999 7999999999999999999999988764
No 34
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=2.2e-15 Score=109.26 Aligned_cols=50 Identities=26% Similarity=0.460 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccCcccccchhhcccC
Q 036087 12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGL-QRCGKSCRLRWINYLR 61 (344)
Q Consensus 12 kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~-~Rt~~QCr~Rw~n~L~ 61 (344)
++|+||+|||++|+++|++||.++|..||+.+++ +|++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999975 6999999999999875
No 35
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.6e-16 Score=116.09 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=53.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCC
Q 036087 7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRG 67 (344)
Q Consensus 7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg 67 (344)
-.|.+++++||+|||++|+++|+.||. +|..||+ +. +|++.||++||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 368899999999999999999999998 9999999 65 7999999999999999876654
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.1e-14 Score=110.90 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=53.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC------CchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhC
Q 036087 61 RPDLRRGSFTEEEEQIIIDVHRILG------NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSK 118 (344)
Q Consensus 61 ~p~lkkg~WT~EED~~Ll~lv~~~G------~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~ 118 (344)
+|.+++++||+|||++|++++.+|| ++|..||++|+|||+.||++||+.+|.+.++.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999999999999 789999999999999999999999998866543
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.50 E-value=4.7e-15 Score=109.69 Aligned_cols=52 Identities=19% Similarity=0.462 Sum_probs=47.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhccc
Q 036087 9 QKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 (344)
Q Consensus 9 p~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L 60 (344)
..+.+++||+|||++|+++|++||.++|..||+.|+.+|+++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3466889999999999999999998899999999976899999999999875
No 38
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.49 E-value=3.7e-14 Score=107.11 Aligned_cols=52 Identities=25% Similarity=0.484 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCC--CCCHHHHHHHHHHHhhhhh
Q 036087 64 LRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLP--GRTDNEVKNYWNSCIKKKL 115 (344)
Q Consensus 64 lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lp--gRT~~qcknRW~~~lkkkl 115 (344)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.|||+||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 58999999865 9999999999999988754
No 39
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.46 E-value=6.1e-15 Score=113.38 Aligned_cols=58 Identities=21% Similarity=0.355 Sum_probs=54.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCC
Q 036087 7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRR 66 (344)
Q Consensus 7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkk 66 (344)
..|.+++++||+|||++|+++|++||. +|..||+.|+ +|++.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999999 9999999998 999999999999999876655
No 40
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=8.9e-14 Score=102.82 Aligned_cols=50 Identities=26% Similarity=0.440 Sum_probs=46.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCC-CCCHHHHHHHHHHHh
Q 036087 62 PDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLP-GRTDNEVKNYWNSCI 111 (344)
Q Consensus 62 p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lp-gRT~~qcknRW~~~l 111 (344)
..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456788999999999999999999 89999999999 999999999998764
No 41
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.11 E-value=2e-14 Score=115.09 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=53.5
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 036087 58 NYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKK 114 (344)
Q Consensus 58 n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkk 114 (344)
..++|.+++++||+|||++|++++.+||++|..||++|+|||++||++||++++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 356789999999999999999999999999999999999999999999999988874
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.40 E-value=1.1e-13 Score=114.34 Aligned_cols=79 Identities=23% Similarity=0.327 Sum_probs=67.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccCcccccchhhccc-----CCCCCCCCCCHHHHHH-H
Q 036087 7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAG---LQRCGKSCRLRWINYL-----RPDLRRGSFTEEEEQI-I 77 (344)
Q Consensus 7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~---~~Rt~~QCr~Rw~n~L-----~p~lkkg~WT~EED~~-L 77 (344)
.+++.++++||+|||++|+++|++||.++|..|++.+. .+||+.+|++||++++ +|.+++|.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 45788999999999999999999999999999999652 3899999999999998 6899999888777655 7
Q ss_pred HHHHHhcC
Q 036087 78 IDVHRILG 85 (344)
Q Consensus 78 l~lv~~~G 85 (344)
++++..+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
No 43
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.36 E-value=2.6e-13 Score=107.62 Aligned_cols=69 Identities=23% Similarity=0.412 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cccccCcccccchhhccc-----CCCCCCC-CCCHHHHHHHHHHHHh
Q 036087 14 GLWSPEEDEKLLKHITAHGHGSWSSVPKL----AGLQRCGKSCRLRWINYL-----RPDLRRG-SFTEEEEQIIIDVHRI 83 (344)
Q Consensus 14 g~WT~EEDe~L~~lV~kyG~~~W~~IA~~----~~~~Rt~~QCr~Rw~n~L-----~p~lkkg-~WT~EED~~Ll~lv~~ 83 (344)
++||+|||++|+++|++||.++|..|++. ++ +||+.+|++||+++| +|.++++ +..++...+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999985 66 899999999999988 6766665 6777777888888754
No 44
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.35 E-value=2.1e-13 Score=105.69 Aligned_cols=55 Identities=24% Similarity=0.375 Sum_probs=48.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCC
Q 036087 8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRR 66 (344)
Q Consensus 8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkk 66 (344)
.|++++|+||+|||++|+++|.+||. +|..||+.| +|++.||+.||.. |....+.
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 48999999999999999999999998 699999998 6999999999984 5544443
No 45
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.34 E-value=5e-13 Score=112.87 Aligned_cols=81 Identities=15% Similarity=0.225 Sum_probs=64.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcCC-chHHHhhh----CCCCCHHHHHHHHHHHhh-----hhhhhC-CCCccccccC
Q 036087 60 LRPDLRRGSFTEEEEQIIIDVHRILGN-RWAQIAKH----LPGRTDNEVKNYWNSCIK-----KKLMSK-GLDPKTHILM 128 (344)
Q Consensus 60 L~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~----lpgRT~~qcknRW~~~lk-----kkl~~~-~~~~~e~~ll 128 (344)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++ +.++++ .+..++...+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 566778999999999999999999996 99999998 489999999999999998 555554 3333333445
Q ss_pred chhhhhhccccc
Q 036087 129 PSHQRAAASSKI 140 (344)
Q Consensus 129 ~~~q~~~~~~~~ 140 (344)
..++..-++++.
T Consensus 91 ~~~h~~~gn~~~ 102 (121)
T 2juh_A 91 LAAHAYWSQQQG 102 (121)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHccchh
Confidence 667777666663
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.34 E-value=1.3e-12 Score=101.24 Aligned_cols=52 Identities=10% Similarity=0.300 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC----CchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 62 PDLRRGSFTEEEEQIIIDVHRILG----NRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 62 p~lkkg~WT~EED~~Ll~lv~~~G----~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
+...+++||.+||++|++++.+|| ++|.+||++|||||.+||++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456789999999999999999999 6899999999999999999999987653
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.31 E-value=4.4e-13 Score=105.26 Aligned_cols=50 Identities=22% Similarity=0.456 Sum_probs=46.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcc
Q 036087 8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59 (344)
Q Consensus 8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~ 59 (344)
+....++.||+|||++|+++|++|| ++|..||++|+ +||+.||+.||.++
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 3556689999999999999999999 69999999999 99999999999998
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.27 E-value=2.8e-12 Score=100.71 Aligned_cols=48 Identities=17% Similarity=0.379 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHH
Q 036087 63 DLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSC 110 (344)
Q Consensus 63 ~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~ 110 (344)
...+++||+|||++|++++.+||++|.+||++|++||..||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 356789999999999999999999999999999999999999999765
No 49
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.26 E-value=3.3e-12 Score=107.98 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=63.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCC-chHHHhhh----CCCCCHHHHHHHHHHHhh-----hhhhhCCCCccc-cccCc
Q 036087 61 RPDLRRGSFTEEEEQIIIDVHRILGN-RWAQIAKH----LPGRTDNEVKNYWNSCIK-----KKLMSKGLDPKT-HILMP 129 (344)
Q Consensus 61 ~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~----lpgRT~~qcknRW~~~lk-----kkl~~~~~~~~e-~~ll~ 129 (344)
....++++||.|||+.|+++|++||. +|..|++. |++||+.+||+||+++++ +.++++.+.+++ ...+.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 33457899999999999999999996 99999997 389999999999999994 566666667666 34455
Q ss_pred hhhhhhcccc
Q 036087 130 SHQRAAASSK 139 (344)
Q Consensus 130 ~~q~~~~~~~ 139 (344)
.++..-+++.
T Consensus 106 ~~h~~~g~~~ 115 (122)
T 2roh_A 106 AAQAYWSVDS 115 (122)
T ss_dssp HHHHHHHSSC
T ss_pred HHHHHHhhHH
Confidence 6666655543
No 50
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.92 E-value=4.5e-13 Score=107.22 Aligned_cols=54 Identities=22% Similarity=0.533 Sum_probs=50.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCC
Q 036087 7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRP 62 (344)
Q Consensus 7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p 62 (344)
.-+.+++|+||+|||++|+++|.+||. +|..||..|+ +||+.||+.||.++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 357889999999999999999999999 8999999999 99999999999998864
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.25 E-value=5.8e-12 Score=116.98 Aligned_cols=78 Identities=23% Similarity=0.400 Sum_probs=61.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCc------hHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhh
Q 036087 62 PDLRRGSFTEEEEQIIIDVHRILGNR------WAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAA 135 (344)
Q Consensus 62 p~lkkg~WT~EED~~Ll~lv~~~G~k------W~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~ 135 (344)
+.+++++||+|||++|+++|+++|++ |..||+.|||||+++||+||+.+|++++... +...++..+.....
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~-- 80 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD-- 80 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT--
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC--
Confidence 35678999999999999999999875 9999999999999999999999999988743 77666655554444
Q ss_pred cccccccc
Q 036087 136 ASSKIACN 143 (344)
Q Consensus 136 ~~~~~~~~ 143 (344)
++ |+.++
T Consensus 81 Gn-~ikis 87 (246)
T 1ign_A 81 GN-LIKTK 87 (246)
T ss_dssp SC-BCEES
T ss_pred CC-ceeee
Confidence 33 55444
No 52
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.23 E-value=1.2e-12 Score=101.35 Aligned_cols=55 Identities=9% Similarity=0.305 Sum_probs=49.8
Q ss_pred CccCCCCCCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCcccccchhhcccC
Q 036087 6 CSKQKVKKGLWSPEEDEKLLKHITAHGH---GSWSSVPKLAGLQRCGKSCRLRWINYLR 61 (344)
Q Consensus 6 ~~Kp~~kkg~WT~EEDe~L~~lV~kyG~---~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~ 61 (344)
.+++...++.||+|||++|++++.+||. .+|.+||+.|+ |||..||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4667888999999999999999999993 47999999999 9999999999998764
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.20 E-value=2.6e-11 Score=100.02 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=47.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCC-chHHHhhhC----CCCCHHHHHHHHHHHhhh
Q 036087 61 RPDLRRGSFTEEEEQIIIDVHRILGN-RWAQIAKHL----PGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 61 ~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~l----pgRT~~qcknRW~~~lkk 113 (344)
.+..++++||.|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34568899999999999999999996 999999965 899999999999999974
No 54
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.19 E-value=2.6e-11 Score=96.10 Aligned_cols=48 Identities=21% Similarity=0.493 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHhcCC-chHHHhhh----CCCCCHHHHHHHHHHHhhhh
Q 036087 67 GSFTEEEEQIIIDVHRILGN-RWAQIAKH----LPGRTDNEVKNYWNSCIKKK 114 (344)
Q Consensus 67 g~WT~EED~~Ll~lv~~~G~-kW~~IAk~----lpgRT~~qcknRW~~~lkkk 114 (344)
.+||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999996 99999996 89999999999999999754
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.16 E-value=3.8e-11 Score=90.04 Aligned_cols=49 Identities=24% Similarity=0.452 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCchHHHh---hhCCCCCHHHHHHHHHHHhhh
Q 036087 65 RRGSFTEEEEQIIIDVHRILGNRWAQIA---KHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 65 kkg~WT~EED~~Ll~lv~~~G~kW~~IA---k~lpgRT~~qcknRW~~~lkk 113 (344)
++.+||+|||+.|+++|++||.+|..|+ ..+++||..++|+||+++.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 467999999999999998765
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.14 E-value=6.1e-11 Score=95.84 Aligned_cols=50 Identities=22% Similarity=0.458 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcC----CchHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 036087 65 RRGSFTEEEEQIIIDVHRILG----NRWAQIAKHLPGRTDNEVKNYWNSCIKKK 114 (344)
Q Consensus 65 kkg~WT~EED~~Ll~lv~~~G----~kW~~IAk~lpgRT~~qcknRW~~~lkkk 114 (344)
.+++||.|||++|++++.+|| ++|.+||+.|||||.++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 68999999999999999999999987664
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=2.7e-09 Score=79.45 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhh
Q 036087 65 RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIK 112 (344)
Q Consensus 65 kkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lk 112 (344)
..++||+||++++++++.+||.+|..||..||+||..+|+.+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999986544
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.89 E-value=2.1e-10 Score=92.68 Aligned_cols=48 Identities=13% Similarity=0.338 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCcccccchhhccc
Q 036087 12 KKGLWSPEEDEKLLKHITAHGH---GSWSSVPKLAGLQRCGKSCRLRWINYL 60 (344)
Q Consensus 12 kkg~WT~EEDe~L~~lV~kyG~---~~W~~IA~~~~~~Rt~~QCr~Rw~n~L 60 (344)
.++.||+|||++|++++.+||. ..|.+||+.|+ |||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4678999999999999999973 46999999999 999999999999864
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.86 E-value=3.6e-09 Score=85.46 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=60.2
Q ss_pred cccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhC-----CCCCHHHHHHHHHHHhhhhhhhCC
Q 036087 49 GKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHL-----PGRTDNEVKNYWNSCIKKKLMSKG 119 (344)
Q Consensus 49 ~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~l-----pgRT~~qcknRW~~~lkkkl~~~~ 119 (344)
+.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||+.+.++.+...+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45678999999976 79999999999999999999999999998 589999999999999888776653
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.83 E-value=4.7e-09 Score=80.95 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=47.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcC----CchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCC
Q 036087 63 DLRRGSFTEEEEQIIIDVHRILG----NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG 119 (344)
Q Consensus 63 ~lkkg~WT~EED~~Ll~lv~~~G----~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~ 119 (344)
..+.+.||.||+++|.+++.+|+ ++|.+||+.+ |||..+|++||..+.+...+..|
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G 64 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPG 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCC
Confidence 34678999999999999999997 6799999998 99999999999988766443333
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.1e-09 Score=79.99 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=48.7
Q ss_pred CCCccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhccc
Q 036087 4 RCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 (344)
Q Consensus 4 ~c~~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L 60 (344)
.-.++.+...++||+||++++.+++.+||. +|..||..|+ +|+..||+.+|....
T Consensus 3 ~~~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 3 SGSSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CSCCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred CccccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 345667778899999999999999999996 9999999999 999999999987543
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.72 E-value=3e-09 Score=79.79 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccc---cccccccCcccccchhhcccC
Q 036087 11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVP---KLAGLQRCGKSCRLRWINYLR 61 (344)
Q Consensus 11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA---~~~~~~Rt~~QCr~Rw~n~L~ 61 (344)
..+.+||+|||+.|+++|++||. +|..|+ ..+. +|+...+++||++..+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 36889999999999999999998 999999 4665 8999999999998664
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.60 E-value=4.8e-08 Score=90.16 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 65 RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 65 kkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
..+.||+||++++++++.+||++|..||+.+++||..|||++|+..+++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999987765
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.46 E-value=2.6e-08 Score=76.76 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=44.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCcccccchhhcccC
Q 036087 9 QKVKKGLWSPEEDEKLLKHITAHGH---GSWSSVPKLAGLQRCGKSCRLRWINYLR 61 (344)
Q Consensus 9 p~~kkg~WT~EEDe~L~~lV~kyG~---~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~ 61 (344)
.+.+++.||.|||++|.+++.+|+. +.|.+||..+| |+..+|+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 3456789999999999999999984 46999999985 999999999987654
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.45 E-value=1.9e-07 Score=72.18 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 66 RGSFTEEEEQIIIDVHRILG----NRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 66 kg~WT~EED~~Ll~lv~~~G----~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
...||.+|+++|.+++..|+ .+|.+||..++|||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 46899999999999999998 4699999999999999999999887443
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.43 E-value=1.3e-07 Score=95.77 Aligned_cols=47 Identities=19% Similarity=0.400 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 67 GSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 67 g~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
..||.+|-+++++++.+||..|..||+.+.+||..|||++|....++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999764443
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.32 E-value=9.4e-08 Score=70.92 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccccccCcccccchhhcccC
Q 036087 13 KGLWSPEEDEKLLKHITAH--------GHGSWSSVPK-LAGLQRCGKSCRLRWINYLR 61 (344)
Q Consensus 13 kg~WT~EEDe~L~~lV~ky--------G~~~W~~IA~-~~~~~Rt~~QCr~Rw~n~L~ 61 (344)
|.+||+|||++|+++|.+| |..-|..+|+ .++ ++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 4445999999 787 9999999999999875
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.29 E-value=8.6e-07 Score=65.70 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHhc--------CCc-hHHHhh-hCCCCCHHHHHHHHHHHhh
Q 036087 66 RGSFTEEEEQIIIDVHRIL--------GNR-WAQIAK-HLPGRTDNEVKNYWNSCIK 112 (344)
Q Consensus 66 kg~WT~EED~~Ll~lv~~~--------G~k-W~~IAk-~lpgRT~~qcknRW~~~lk 112 (344)
+.+||+|||++|++.|.+| |+. |.++++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 7999999999999987664
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.25 E-value=2e-07 Score=72.10 Aligned_cols=48 Identities=25% Similarity=0.495 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCcccccchhhcccC
Q 036087 13 KGLWSPEEDEKLLKHITAHGH---GSWSSVPKLAGLQRCGKSCRLRWINYLR 61 (344)
Q Consensus 13 kg~WT~EEDe~L~~lV~kyG~---~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~ 61 (344)
...||.+|+.+|.+++..|+. +.|..||..+| +|+..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 467999999999999999976 46999999999 9999999999997754
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.24 E-value=3.1e-07 Score=84.80 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=45.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccC
Q 036087 10 KVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR 61 (344)
Q Consensus 10 ~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~ 61 (344)
....++||+||++++++++.+||. +|..||+.++ +||..||+.+|.++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 345779999999999999999997 9999999999 9999999999998764
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=9.4e-06 Score=60.65 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=45.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhh-hCCCCCHHHHHHHHHHHh
Q 036087 61 RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAK-HLPGRTDNEVKNYWNSCI 111 (344)
Q Consensus 61 ~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk-~lpgRT~~qcknRW~~~l 111 (344)
.|.++...||+||-++..+++.+||..|..|++ .+++||..+|...|+...
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence 366778899999999999999999999999999 489999999999887543
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.02 E-value=8.9e-06 Score=78.22 Aligned_cols=100 Identities=16% Similarity=0.241 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccc-------hhhcc---------------------------
Q 036087 14 GLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRL-------RWINY--------------------------- 59 (344)
Q Consensus 14 g~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~-------Rw~n~--------------------------- 59 (344)
+.||..+...++.++.+||..+|..||..|+ +++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 888877643 22110
Q ss_pred -------------c---CCCCCCCCCCHHHHHHHHHHHHhcCC----chHHHhh------------hCCCCCHHHHHHHH
Q 036087 60 -------------L---RPDLRRGSFTEEEEQIIIDVHRILGN----RWAQIAK------------HLPGRTDNEVKNYW 107 (344)
Q Consensus 60 -------------L---~p~lkkg~WT~EED~~Ll~lv~~~G~----kW~~IAk------------~lpgRT~~qcknRW 107 (344)
| .+.-++..||++||..|+-.+.+||- .|..|.. .+..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 1 02224568999999999999999994 5999972 34679999999999
Q ss_pred HHHhhhh
Q 036087 108 NSCIKKK 114 (344)
Q Consensus 108 ~~~lkkk 114 (344)
+.+++--
T Consensus 270 ~tLi~~i 276 (304)
T 1ofc_X 270 NTLITLI 276 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.90 E-value=2.9e-06 Score=65.48 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCC----chHHHhhhCCCCCHHHHHHHHH
Q 036087 66 RGSFTEEEEQIIIDVHRILGN----RWAQIAKHLPGRTDNEVKNYWN 108 (344)
Q Consensus 66 kg~WT~EED~~Ll~lv~~~G~----kW~~IAk~lpgRT~~qcknRW~ 108 (344)
.+.||.+|+++|..++.+|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999885
No 74
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.88 E-value=1.6e-05 Score=63.72 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---chHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 036087 66 RGSFTEEEEQIIIDVHRILGN---RWAQIAKHLPGRTDNEVKNYWNSCIKKK 114 (344)
Q Consensus 66 kg~WT~EED~~Ll~lv~~~G~---kW~~IAk~lpgRT~~qcknRW~~~lkkk 114 (344)
--.||.|||+.|+...++-|. .|..||+.|.+|+.+||++||+.+++-.
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 346999999999999999985 7999999999999999999999988753
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.80 E-value=4.5e-05 Score=61.40 Aligned_cols=61 Identities=18% Similarity=0.286 Sum_probs=51.9
Q ss_pred chhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCC-----CCCHHHHHHHHHHHhhhhhhhC
Q 036087 54 LRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLP-----GRTDNEVKNYWNSCIKKKLMSK 118 (344)
Q Consensus 54 ~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lp-----gRT~~qcknRW~~~lkkkl~~~ 118 (344)
+.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||+.+.++.++..
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34556665 3689999999999999999999999998873 7999999999999988876554
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.74 E-value=5e-06 Score=64.18 Aligned_cols=44 Identities=11% Similarity=0.245 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---CccccccccccccCcccccchhh
Q 036087 13 KGLWSPEEDEKLLKHITAHGHG---SWSSVPKLAGLQRCGKSCRLRWI 57 (344)
Q Consensus 13 kg~WT~EEDe~L~~lV~kyG~~---~W~~IA~~~~~~Rt~~QCr~Rw~ 57 (344)
.+.||.+|+++|.+++..|+.+ .|.+||..+| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 5679999999999999999764 6999999999 999999999985
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.90 E-value=4.7e-06 Score=63.37 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---chHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 68 SFTEEEEQIIIDVHRILGN---RWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 68 ~WT~EED~~Ll~lv~~~G~---kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
.||.|||+.|+..+++-|. .|+.||+.| +|+.+||.+||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 6999999999999999996 799999999 99999999999987754
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=2.1e-05 Score=58.78 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=45.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccCcccccchhhc
Q 036087 7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWIN 58 (344)
Q Consensus 7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~-~~~~~Rt~~QCr~Rw~n 58 (344)
..|.++...||+||-++..+++.+||. +|..|++ .++ +|+..+|..-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 568888999999999999999999998 9999998 588 9999999887753
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.48 E-value=0.00016 Score=58.08 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHH
Q 036087 66 RGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSC 110 (344)
Q Consensus 66 kg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~ 110 (344)
...||+||.++..+....||.+|..||..|++||..+|...|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999988754
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.48 E-value=0.00023 Score=54.23 Aligned_cols=44 Identities=14% Similarity=0.305 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHhh-hCCCCCHHHHHHHHHH
Q 036087 66 RGSFTEEEEQIIIDVHRILGNRWAQIAK-HLPGRTDNEVKNYWNS 109 (344)
Q Consensus 66 kg~WT~EED~~Ll~lv~~~G~kW~~IAk-~lpgRT~~qcknRW~~ 109 (344)
...||+||-++..+++.+||..|..|++ .|++||..+|...|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5899999999999874
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.38 E-value=5.2e-05 Score=76.92 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcc
Q 036087 11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59 (344)
Q Consensus 11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~ 59 (344)
....+||.||-+++++++.+||. +|..||+.++ +|+..||+..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34689999999999999999998 9999999999 99999999998765
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.34 E-value=5.2e-05 Score=61.08 Aligned_cols=49 Identities=10% Similarity=0.217 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----cccCcccccchhhccc
Q 036087 11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAG----LQRCGKSCRLRWINYL 60 (344)
Q Consensus 11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~----~~Rt~~QCr~Rw~n~L 60 (344)
++...||.||+..|++++++|+. .|..|+.++. .+|+..++++||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998 9999999883 2799999999998754
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.02 E-value=0.00062 Score=53.17 Aligned_cols=49 Identities=18% Similarity=0.432 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhcC----------CchHHHhhhC----CCCCHHHHHHHHHHHhhhh
Q 036087 66 RGSFTEEEEQIIIDVHRILG----------NRWAQIAKHL----PGRTDNEVKNYWNSCIKKK 114 (344)
Q Consensus 66 kg~WT~EED~~Ll~lv~~~G----------~kW~~IAk~l----pgRT~~qcknRW~~~lkkk 114 (344)
...||.+|-..||++...+. ..|..||..| -.||+.||+.+|.++.+.-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999987632 1499999986 3799999999999977763
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.98 E-value=7.5e-05 Score=58.48 Aligned_cols=50 Identities=20% Similarity=0.494 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC------C---Ccccccccc---ccccCcccccchhhccc
Q 036087 11 VKKGLWSPEEDEKLLKHITAHGH------G---SWSSVPKLA---GLQRCGKSCRLRWINYL 60 (344)
Q Consensus 11 ~kkg~WT~EEDe~L~~lV~kyG~------~---~W~~IA~~~---~~~Rt~~QCr~Rw~n~L 60 (344)
.+...||.+|-.+|+++...+.. . -|..||..| |..|++.||+.+|.++.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35678999999999999976421 1 499999876 35799999999998754
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.88 E-value=0.00031 Score=56.42 Aligned_cols=44 Identities=16% Similarity=0.400 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhc
Q 036087 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWIN 58 (344)
Q Consensus 13 kg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n 58 (344)
...||+||.++..++...||. +|..||+.++ +|+..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhc
Confidence 468999999999999999998 9999999998 9999999987753
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.84 E-value=0.0019 Score=57.83 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHhcC-CchHHHhhhC--------------CCCCHHHHHHHHHHHhhh
Q 036087 68 SFTEEEEQIIIDVHRILG-NRWAQIAKHL--------------PGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 68 ~WT~EED~~Ll~lv~~~G-~kW~~IAk~l--------------pgRT~~qcknRW~~~lkk 113 (344)
.||.+||..|+..+.+|| ++|..|.... ..++...+..|...+|+-
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 599999999999999999 8999997521 124677899998877663
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.79 E-value=0.0027 Score=62.57 Aligned_cols=101 Identities=17% Similarity=0.248 Sum_probs=77.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcc----------------------------------
Q 036087 14 GLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY---------------------------------- 59 (344)
Q Consensus 14 g~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~---------------------------------- 59 (344)
+.||.-+=..++.++.+||..+-..||..|+.+++...++ +|.++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999885356666555 22211
Q ss_pred --------------cC---CCC--CCCCCCHHHHHHHHHHHHhcC----CchHHHhhh------------CCCCCHHHHH
Q 036087 60 --------------LR---PDL--RRGSFTEEEEQIIIDVHRILG----NRWAQIAKH------------LPGRTDNEVK 104 (344)
Q Consensus 60 --------------L~---p~l--kkg~WT~EED~~Ll~lv~~~G----~kW~~IAk~------------lpgRT~~qck 104 (344)
|. +.- ++..||++||..|+-++.+|| +.|..|-.. +..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 10 111 355799999999999999999 459999543 3569999999
Q ss_pred HHHHHHhhhhh
Q 036087 105 NYWNSCIKKKL 115 (344)
Q Consensus 105 nRW~~~lkkkl 115 (344)
.|...+++--.
T Consensus 283 rRc~tLi~~Ie 293 (374)
T 2y9y_A 283 RRGNTLLQCLE 293 (374)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997543
No 88
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.74 E-value=0.00074 Score=51.35 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccCcccccchhhc
Q 036087 12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWIN 58 (344)
Q Consensus 12 kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~-~~~~~Rt~~QCr~Rw~n 58 (344)
....||+||-++..+++.+||. +|..|++ .++ +|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 5568999999999999999998 9999999 588 9999999987753
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.28 E-value=0.0011 Score=52.97 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=43.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC--CCccccccccccccCcccccchhhcc
Q 036087 9 QKVKKGLWSPEEDEKLLKHITAHGH--GSWSSVPKLAGLQRCGKSCRLRWINY 59 (344)
Q Consensus 9 p~~kkg~WT~EEDe~L~~lV~kyG~--~~W~~IA~~~~~~Rt~~QCr~Rw~n~ 59 (344)
+.-+--.||.|||..|+...++.|. ..|..||+.++ +|++.|+.+||+..
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 3445568999999999999999876 36999999998 89999999999763
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.08 E-value=0.00097 Score=50.69 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCccccccccccccCcccccchhhcccC
Q 036087 12 KKGLWSPEEDEKLLKHITAHGH--GSWSSVPKLAGLQRCGKSCRLRWINYLR 61 (344)
Q Consensus 12 kkg~WT~EEDe~L~~lV~kyG~--~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~ 61 (344)
.--.||.|||..|+..+++-|. .-|..||+.++ |++.|+.+||...+.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLMK 62 (70)
Confidence 4457999999999999999886 36999999885 999999999987654
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.47 E-value=0.012 Score=47.22 Aligned_cols=49 Identities=10% Similarity=0.217 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----cccCcccccchhhccc
Q 036087 11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAG----LQRCGKSCRLRWINYL 60 (344)
Q Consensus 11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~----~~Rt~~QCr~Rw~n~L 60 (344)
++...||.||...|.+++++|.- .|..|+.+.. ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 34468999999999999999998 9999998764 2688889999988653
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.72 E-value=0.27 Score=36.78 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCc---hHHHhhhC--CCCCHHHHHHHHHHHh
Q 036087 64 LRRGSFTEEEEQIIIDVHRILGNR---WAQIAKHL--PGRTDNEVKNYWNSCI 111 (344)
Q Consensus 64 lkkg~WT~EED~~Ll~lv~~~G~k---W~~IAk~l--pgRT~~qcknRW~~~l 111 (344)
..+-.||+|..+..++++.++|.. +..|.+.| +|.|..+|+.+.+.+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999954 78998875 7999999999987654
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.38 E-value=0.31 Score=46.76 Aligned_cols=48 Identities=23% Similarity=0.332 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 66 RGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 66 kg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
-+.||..+...++.+..+|| ..|..||..|+|+|..+|+..+..+..+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 45799999999999999999 5799999999999999998877776655
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.80 E-value=0.35 Score=42.89 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=41.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC---CchHHHhhh--CCCCCHHHHHHHHHHHhhh
Q 036087 64 LRRGSFTEEEEQIIIDVHRILG---NRWAQIAKH--LPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 64 lkkg~WT~EED~~Ll~lv~~~G---~kW~~IAk~--lpgRT~~qcknRW~~~lkk 113 (344)
-....||+.|-..|++++.+|| .+|..|+.. |.+||...++..+..++..
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999 579999875 7899999999877776654
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.52 E-value=0.12 Score=48.78 Aligned_cols=28 Identities=43% Similarity=0.783 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 036087 14 GLWSPEEDEKLLKHITAHGHGSWSSVPK 41 (344)
Q Consensus 14 g~WT~EEDe~L~~lV~kyG~~~W~~IA~ 41 (344)
..|+.+||..|+..|.+||.|+|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999985
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=90.19 E-value=0.13 Score=38.48 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=37.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC--Cccccccccc-cccCcccccchhhcc
Q 036087 10 KVKKGLWSPEEDEKLLKHITAHGHG--SWSSVPKLAG-LQRCGKSCRLRWINY 59 (344)
Q Consensus 10 ~~kkg~WT~EEDe~L~~lV~kyG~~--~W~~IA~~~~-~~Rt~~QCr~Rw~n~ 59 (344)
+..+-.||+|..++.+++|++.|.. -+..|.+.|+ .+.|..++..|.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4466779999999999999999952 1678888776 256777777665443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=74.56 E-value=6 Score=37.12 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CchHHHhhh--CCCCCHHHHHHHHHHHhhh
Q 036087 66 RGSFTEEEEQIIIDVHRILG---NRWAQIAKH--LPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 66 kg~WT~EED~~Ll~lv~~~G---~kW~~IAk~--lpgRT~~qcknRW~~~lkk 113 (344)
++.||..|-..|++.+.+|| .+|..|+.. |+.|+...++.-+..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 589999874 6899999999888866654
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=58.46 E-value=15 Score=25.65 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 69 FTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 69 WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
++ +.+..++.+.-..|-.+.+||..+ |-+...|+.+....+++
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44 445556666667788999999999 88999999887766554
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=54.18 E-value=19 Score=25.87 Aligned_cols=43 Identities=14% Similarity=0.349 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHh----cCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 69 FTEEEEQIIIDVHRI----LGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 69 WT~EED~~Ll~lv~~----~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
.++.| ..++.+.-. .|-.+.+||..+ |-+...|+.+....+++
T Consensus 11 L~~~e-r~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 11 LSERE-AMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp SCHHH-HHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 44444 445555444 577899999999 88999999987776655
No 100
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=54.04 E-value=2.9 Score=34.70 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=33.3
Q ss_pred CCccccccccccccCc----ccccchhhcccCCCCCCCCCCHHHHHHHHHHHH
Q 036087 34 GSWSSVPKLAGLQRCG----KSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHR 82 (344)
Q Consensus 34 ~~W~~IA~~~~~~Rt~----~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~ 82 (344)
+.|..||..|+...+. ...+..|.++|.|- ...+++|-..|.+-|.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 3699999999854433 46688899988763 2378888888877654
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=49.66 E-value=21 Score=25.26 Aligned_cols=40 Identities=10% Similarity=0.200 Sum_probs=29.8
Q ss_pred HHHHHHHHHH----hcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 73 EEQIIIDVHR----ILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 73 ED~~Ll~lv~----~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
.+..++.+.- ..|-.+.+||..+ |-+...|+.+....+++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3444444544 3477899999999 89999999988876655
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=47.10 E-value=3.9 Score=33.30 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC-------CCccccccccccccCcccccchhhcccCC
Q 036087 23 KLLKHITAHGH-------GSWSSVPKLAGLQRCGKSCRLRWINYLRP 62 (344)
Q Consensus 23 ~L~~lV~kyG~-------~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p 62 (344)
+|..+|.+.|. +.|..||..++... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 56777777764 47999999998443 77888888888764
No 103
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=45.60 E-value=17 Score=31.89 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=21.9
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhCCCCccccc
Q 036087 9 QKVKKGLWSPEEDEKLL--------KHITAHGHGSWSSVP 40 (344)
Q Consensus 9 p~~kkg~WT~EEDe~L~--------~lV~kyG~~~W~~IA 40 (344)
|.-.+|.||+|+|+.|. ++++||| |..|.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 45678999999999885 5777887 44444
No 104
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=44.40 E-value=36 Score=33.40 Aligned_cols=48 Identities=27% Similarity=0.332 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CchHHHhhhCC-CCCHHHHHHHHHHHhhh
Q 036087 66 RGSFTEEEEQIIIDVHRILG-NRWAQIAKHLP-GRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 66 kg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lp-gRT~~qcknRW~~~lkk 113 (344)
-+.||.-+=..++.+..+|| ..-..||..|. |+|..+|+.....+..+
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 34799999999999999999 45999999997 99999999655555444
No 105
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=44.28 E-value=17 Score=29.37 Aligned_cols=38 Identities=11% Similarity=0.280 Sum_probs=29.1
Q ss_pred HHHHHHHhcCC--------chHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 76 IIIDVHRILGN--------RWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 76 ~Ll~lv~~~G~--------kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
+|..+|.+.|+ .|..||..|.--....+|..|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 36777777773 699999987333378999999988866
No 106
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=44.27 E-value=21 Score=29.82 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 036087 72 EEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMS 117 (344)
Q Consensus 72 EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~ 117 (344)
+-|.+|+++.++.| -.|.+||+.+ |-+...|+.|++.+.+..+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 56788888888777 4799999999 899999999999888777654
No 107
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=43.70 E-value=36 Score=26.79 Aligned_cols=38 Identities=13% Similarity=0.347 Sum_probs=27.7
Q ss_pred HHHHHHHhcCC--------chHHHhhhCCCCC----HHHHHHHHHHHhhh
Q 036087 76 IIIDVHRILGN--------RWAQIAKHLPGRT----DNEVKNYWNSCIKK 113 (344)
Q Consensus 76 ~Ll~lv~~~G~--------kW~~IAk~lpgRT----~~qcknRW~~~lkk 113 (344)
+|..+|.+.|+ .|.+||..|.--. ...+|..|..+|.+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46667777773 6999999983222 46889999888766
No 108
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=43.53 E-value=6 Score=31.53 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCC-------CCcccccccccccc----CcccccchhhcccCC
Q 036087 22 EKLLKHITAHGH-------GSWSSVPKLAGLQR----CGKSCRLRWINYLRP 62 (344)
Q Consensus 22 e~L~~lV~kyG~-------~~W~~IA~~~~~~R----t~~QCr~Rw~n~L~p 62 (344)
-+|..+|.+.|. +.|.+||..++... .+.+++..|.++|.+
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 356777777653 47999999998433 236778889888876
No 109
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=42.55 E-value=32 Score=27.81 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=27.8
Q ss_pred HHHHHHHhcCC--------chHHHhhhCCCCC----HHHHHHHHHHHhhh
Q 036087 76 IIIDVHRILGN--------RWAQIAKHLPGRT----DNEVKNYWNSCIKK 113 (344)
Q Consensus 76 ~Ll~lv~~~G~--------kW~~IAk~lpgRT----~~qcknRW~~~lkk 113 (344)
+|..+|.+.|+ .|.+|+..|.--. ...+|..|..+|.+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777773 6999999982211 56789999888766
No 110
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=41.76 E-value=35 Score=25.55 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 72 EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 72 EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
+.++.++.+....|-.-.+||+.+ |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345556666666788899999999 88999999888765544
No 111
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=41.71 E-value=23 Score=29.13 Aligned_cols=38 Identities=11% Similarity=0.267 Sum_probs=28.9
Q ss_pred HHHHHHhcCC--------chHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 036087 77 IIDVHRILGN--------RWAQIAKHLPGRTDNEVKNYWNSCIKKK 114 (344)
Q Consensus 77 Ll~lv~~~G~--------kW~~IAk~lpgRT~~qcknRW~~~lkkk 114 (344)
|..+|.+.|+ .|.+|+..|.--....+|..|..+|.+-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 5666666663 5999999873333899999999998774
No 112
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=38.39 E-value=42 Score=27.36 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=28.5
Q ss_pred HHHHHHHhcCC--------chHHHhhhCCCC----CHHHHHHHHHHHhhhh
Q 036087 76 IIIDVHRILGN--------RWAQIAKHLPGR----TDNEVKNYWNSCIKKK 114 (344)
Q Consensus 76 ~Ll~lv~~~G~--------kW~~IAk~lpgR----T~~qcknRW~~~lkkk 114 (344)
+|..+|.+.|+ .|.+||..|.-- ....+|..|..+|.+-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46677777773 699999998222 2468899999888763
No 113
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.22 E-value=42 Score=27.29 Aligned_cols=38 Identities=11% Similarity=0.291 Sum_probs=27.5
Q ss_pred HHHHHHHhcCC--------chHHHhhhCCCC--C--HHHHHHHHHHHhhh
Q 036087 76 IIIDVHRILGN--------RWAQIAKHLPGR--T--DNEVKNYWNSCIKK 113 (344)
Q Consensus 76 ~Ll~lv~~~G~--------kW~~IAk~lpgR--T--~~qcknRW~~~lkk 113 (344)
+|..+|.+.|+ .|.+|+..|.-. + ...+|..|..+|.+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46677777773 699999998221 2 36888889888766
No 114
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=35.57 E-value=9.3 Score=31.06 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=28.1
Q ss_pred HHHHHHHHhCC-------CCccccccccccccC---cccccchhhcccCC
Q 036087 23 KLLKHITAHGH-------GSWSSVPKLAGLQRC---GKSCRLRWINYLRP 62 (344)
Q Consensus 23 ~L~~lV~kyG~-------~~W~~IA~~~~~~Rt---~~QCr~Rw~n~L~p 62 (344)
+|..+|.+.|. +.|.+||..++...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57778887764 469999999984332 34567777777654
No 115
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=33.81 E-value=82 Score=22.25 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 69 FTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 69 WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
+|+.|-+. +.++ ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQV-LSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHH-HHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45555444 4454 5677899999999 88999999988776655
No 116
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=33.44 E-value=56 Score=26.65 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCC--------chHHHhhhC--CCC---CHHHHHHHHHHHhhhh
Q 036087 75 QIIIDVHRILGN--------RWAQIAKHL--PGR---TDNEVKNYWNSCIKKK 114 (344)
Q Consensus 75 ~~Ll~lv~~~G~--------kW~~IAk~l--pgR---T~~qcknRW~~~lkkk 114 (344)
-+|..+|.+.|+ .|.+|+..| +.. ....+|..|..+|.+-
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 346677777773 699999998 322 2578899999988774
No 117
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=32.81 E-value=10 Score=31.18 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC-------CCccccccccccccC----cccccchhhcccCC
Q 036087 23 KLLKHITAHGH-------GSWSSVPKLAGLQRC----GKSCRLRWINYLRP 62 (344)
Q Consensus 23 ~L~~lV~kyG~-------~~W~~IA~~~~~~Rt----~~QCr~Rw~n~L~p 62 (344)
+|..+|.+.|. +.|..||..++...+ +.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777764 479999999985432 34667778887765
No 118
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=32.75 E-value=51 Score=27.03 Aligned_cols=76 Identities=16% Similarity=0.344 Sum_probs=49.9
Q ss_pred CCCCCHHHH--HHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCC----
Q 036087 13 KGLWSPEED--EKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGN---- 86 (344)
Q Consensus 13 kg~WT~EED--e~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~---- 86 (344)
+.+|.+.+. +.|.+..+..|. .-..++.. + +|.- | --+|..+|.+.|+
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i-~-gk~l-----------D------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGI-TMDELPLI-G-GCEL-----------D------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEE-T-TEEC-----------C------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcC-C-CEec-----------c------------HHHHHHHHHHcCcHHHh
Confidence 456887765 567777777787 55555533 2 2321 1 1246677788873
Q ss_pred ----chHHHhhhC--CCC---CHHHHHHHHHHHhhhh
Q 036087 87 ----RWAQIAKHL--PGR---TDNEVKNYWNSCIKKK 114 (344)
Q Consensus 87 ----kW~~IAk~l--pgR---T~~qcknRW~~~lkkk 114 (344)
.|.+||..| |.- ....+|..|..+|-+-
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 699999998 322 2468899998888763
No 119
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=32.66 E-value=61 Score=24.02 Aligned_cols=40 Identities=8% Similarity=0.178 Sum_probs=29.4
Q ss_pred HHHHHHHHHHh----cCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 73 EEQIIIDVHRI----LGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 73 ED~~Ll~lv~~----~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
.+..++.+.-. .|-.+..||..+ |-+...|+.+-...+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34445555443 567899999999 88999999987766655
No 120
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=31.74 E-value=1.3e+02 Score=24.41 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcc------cCCCCC----CCCCCHHHHHHHHHHHHh
Q 036087 14 GLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY------LRPDLR----RGSFTEEEEQIIIDVHRI 83 (344)
Q Consensus 14 g~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~------L~p~lk----kg~WT~EED~~Ll~lv~~ 83 (344)
...|.++-..++.++. .|. ...+||+.++ .+...+ .||.+. +.+... ....+.++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688888888888884 564 7889999987 443333 334432 222211 235788888888888765
Q ss_pred c
Q 036087 84 L 84 (344)
Q Consensus 84 ~ 84 (344)
.
T Consensus 99 ~ 99 (159)
T 2k27_A 99 N 99 (159)
T ss_dssp C
T ss_pred C
Confidence 4
No 121
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=31.66 E-value=69 Score=26.30 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=24.2
Q ss_pred cCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 84 LGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 84 ~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
.|-...+||..+ |-+...|+.+....+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467799999999 88999999988776654
No 122
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=31.32 E-value=1.8e+02 Score=22.44 Aligned_cols=88 Identities=15% Similarity=0.099 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccC------CCCCCCCCCHHHHHHHHHHHHhcCCc
Q 036087 14 GLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR------PDLRRGSFTEEEEQIIIDVHRILGNR 87 (344)
Q Consensus 14 g~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~------p~lkkg~WT~EED~~Ll~lv~~~G~k 87 (344)
...|.++-..++.++. -|. .-.+||+.+| .+...++ ||.+... ..-.....+.+++..|+++...-+-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 4578888888887773 454 7889999987 4444443 3332211 11122357888888888773332234
Q ss_pred hHHHhhhCCC--CCHHHHHHHH
Q 036087 88 WAQIAKHLPG--RTDNEVKNYW 107 (344)
Q Consensus 88 W~~IAk~lpg--RT~~qcknRW 107 (344)
-.+|+..+ | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 57788887 4 4666665543
No 123
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=31.24 E-value=11 Score=30.86 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=26.8
Q ss_pred HHHHHHHHhCC-------CCccccccccccccC---cccccchhhcccCC
Q 036087 23 KLLKHITAHGH-------GSWSSVPKLAGLQRC---GKSCRLRWINYLRP 62 (344)
Q Consensus 23 ~L~~lV~kyG~-------~~W~~IA~~~~~~Rt---~~QCr~Rw~n~L~p 62 (344)
+|..+|.+.|. +.|.+||..++...+ +.+++..|.++|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777654 369999999885432 34667777777653
No 124
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=31.13 E-value=53 Score=27.54 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=28.9
Q ss_pred HHHHHHHhcCC--------chHHHhhhC--CCC---CHHHHHHHHHHHhhhh
Q 036087 76 IIIDVHRILGN--------RWAQIAKHL--PGR---TDNEVKNYWNSCIKKK 114 (344)
Q Consensus 76 ~Ll~lv~~~G~--------kW~~IAk~l--pgR---T~~qcknRW~~~lkkk 114 (344)
+|..+|.+.|+ .|.+|+..| +.. ....+|..|..+|.+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 46677777773 699999998 322 2578999999888764
No 125
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=30.46 E-value=91 Score=23.56 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 65 RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 65 kkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
.....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34468888877666554 688889999999 88999999998887665
No 126
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=30.26 E-value=1.3e+02 Score=24.00 Aligned_cols=67 Identities=7% Similarity=0.043 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcc------cCCCCC----CCCCCHHHHHHHHHHHHh
Q 036087 14 GLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY------LRPDLR----RGSFTEEEEQIIIDVHRI 83 (344)
Q Consensus 14 g~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~------L~p~lk----kg~WT~EED~~Ll~lv~~ 83 (344)
...|.++-..++.++. .|. ...+||+.++ .+...+ .||.+. +.+... ....+.++.+.|++++.+
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 4688888888888874 464 7789999987 443333 233321 223222 234788888888888766
Q ss_pred cC
Q 036087 84 LG 85 (344)
Q Consensus 84 ~G 85 (344)
.+
T Consensus 106 ~~ 107 (149)
T 1k78_A 106 NP 107 (149)
T ss_dssp CT
T ss_pred Cc
Confidence 43
No 127
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=29.58 E-value=18 Score=30.54 Aligned_cols=54 Identities=26% Similarity=0.372 Sum_probs=33.3
Q ss_pred HHHHHHHHhCC-------CCccccccccccccC----cccccchhhcccCC--CCCCCCCCHHHHHH
Q 036087 23 KLLKHITAHGH-------GSWSSVPKLAGLQRC----GKSCRLRWINYLRP--DLRRGSFTEEEEQI 76 (344)
Q Consensus 23 ~L~~lV~kyG~-------~~W~~IA~~~~~~Rt----~~QCr~Rw~n~L~p--~lkkg~WT~EED~~ 76 (344)
+|..+|.+.|. +.|.+||..|+...+ +.+++..|.++|.| ...+|.=.++|-+.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~ 134 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQA 134 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 45666666654 469999999884332 35678888888876 22334444444333
No 128
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=29.58 E-value=63 Score=27.30 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 036087 71 EEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMS 117 (344)
Q Consensus 71 ~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~ 117 (344)
.+-|.+|+++..+.| ..+.+||+.+ |-+...|+.|.+.+.+..+..
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 355667777777766 5799999999 889999999998877776543
No 129
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=29.13 E-value=76 Score=25.63 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 036087 72 EEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMS 117 (344)
Q Consensus 72 EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~ 117 (344)
+-|.+|+.+....| -.+.+||+.+ |-+...|+.|.+.+.+..+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 44667777777766 5799999999 889999999998887776543
No 130
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=28.91 E-value=29 Score=26.78 Aligned_cols=38 Identities=13% Similarity=0.348 Sum_probs=25.8
Q ss_pred HHHHHHHhcC--------CchHHHhhhC--CC-C-CHHHHHHHHHHHhhh
Q 036087 76 IIIDVHRILG--------NRWAQIAKHL--PG-R-TDNEVKNYWNSCIKK 113 (344)
Q Consensus 76 ~Ll~lv~~~G--------~kW~~IAk~l--pg-R-T~~qcknRW~~~lkk 113 (344)
+|..+|.+.| +.|.+|+..| +. - ....+|..|..+|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 3666666665 3699999987 22 1 256788888777654
No 131
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=28.30 E-value=86 Score=23.67 Aligned_cols=43 Identities=26% Similarity=0.260 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 68 SFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 68 ~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
..|+.|-+.|.- + ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467776665554 4 6788889999999 88999999988776655
No 132
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=27.94 E-value=85 Score=23.01 Aligned_cols=43 Identities=28% Similarity=0.228 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 68 SFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 68 ~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
..|+.|-+.|.- + ..|-.-.+||+.+ |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467766665554 4 5678899999999 88999999988776655
No 133
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=27.92 E-value=91 Score=21.56 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 67 GSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 67 g~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
..+|+.|-+.|.. + ..|..-.+||..+ |-+...|+.+...++++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3577777766655 4 5677889999999 88999999888776554
No 134
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=27.17 E-value=46 Score=27.26 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=24.0
Q ss_pred cCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 84 LGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 84 ~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
.|-...+||..+ |-+...|+++....+++
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466789999999 88999999998876655
No 135
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=26.26 E-value=86 Score=24.71 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHH
Q 036087 70 TEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKN 105 (344)
Q Consensus 70 T~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qckn 105 (344)
++.-+..|..+....|..|..+|++| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56677788888889999999999999 777766544
No 136
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=26.08 E-value=1.1e+02 Score=24.05 Aligned_cols=40 Identities=8% Similarity=0.082 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 73 EEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 73 ED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
.+..++.++...|-...+||..+ |-+...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44555666666788899999999 88999999887765544
No 137
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=25.54 E-value=91 Score=25.25 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 036087 72 EEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMS 117 (344)
Q Consensus 72 EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~ 117 (344)
+-|.+|+.+....| -.+.+||+.+ |-+...|+.|...+.+..+..
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 34566777777766 5799999999 889999999998887776544
No 138
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.61 E-value=1.1e+02 Score=20.39 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 74 EQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 74 D~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
+..++.+ -..|-.-.+||..+ |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3445555 35577789999999 88999999988776655
No 139
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=24.51 E-value=86 Score=24.65 Aligned_cols=29 Identities=24% Similarity=0.278 Sum_probs=23.4
Q ss_pred cCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 84 LGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 84 ~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
.|-...+||+.+ |-+...|+.+....+++
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 466799999999 88999999888765544
No 140
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=24.07 E-value=1.1e+02 Score=25.82 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=26.6
Q ss_pred HHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087 77 IIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113 (344)
Q Consensus 77 Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk 113 (344)
++.+.-..|-...+||+.+ |-+...|+.+....+++
T Consensus 195 vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 195 VIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3334334567899999999 88999999887765544
No 141
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=22.34 E-value=89 Score=25.05 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCchHHHhhhCCCCCHHHHHH
Q 036087 74 EQIIIDVHRILGNRWAQIAKHLPGRTDNEVKN 105 (344)
Q Consensus 74 D~~Ll~lv~~~G~kW~~IAk~lpgRT~~qckn 105 (344)
+..|..+....|..|..+|+.+ |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567777888999999999999 666665543
No 142
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.96 E-value=16 Score=30.66 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCC
Q 036087 19 EEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRP 62 (344)
Q Consensus 19 EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p 62 (344)
+-|.+|+++..+.|.-.|.+||+.+| -+...|+.|..+....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 45888899998888889999999998 7777888877765433
No 143
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.19 E-value=1e+02 Score=24.84 Aligned_cols=40 Identities=18% Similarity=0.377 Sum_probs=26.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHH
Q 036087 62 PDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKN 105 (344)
Q Consensus 62 p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qckn 105 (344)
+.+-...=|.+ .|..+....|..|..+|+.+ |=+..+|..
T Consensus 15 ~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 15 SHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp -CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred chhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 33334444555 45556788999999999998 666665543
No 144
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=20.93 E-value=1.1e+02 Score=24.74 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCchHHHhhhCCCCCHHHHH
Q 036087 76 IIIDVHRILGNRWAQIAKHLPGRTDNEVK 104 (344)
Q Consensus 76 ~Ll~lv~~~G~kW~~IAk~lpgRT~~qck 104 (344)
.|..+....|..|..+|+.+ |=+..+|.
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 45566788999999999998 66666553
No 145
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=20.31 E-value=61 Score=28.33 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=18.3
Q ss_pred ccchhhcccC-CCCCCCCCCHHHHHHHH
Q 036087 52 CRLRWINYLR-PDLRRGSFTEEEEQIII 78 (344)
Q Consensus 52 Cr~Rw~n~L~-p~lkkg~WT~EED~~Ll 78 (344)
+.+.|..-.. |.-..|-||.++|+.|.
T Consensus 99 VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 99 FLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 3344443333 45678999999999887
Done!