BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036088
(737 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 22/196 (11%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLY 187
G+I ++G +GS KTTL+ +AG ++ G + L+G LL+ YV Q+
Sbjct: 37 GKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKNVGYVFQNPSSQ 93
Query: 188 SM-LTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAA----MTIIGDEQHXXX 242
+ T+EE + FS E L + + RKR+ +++ +GL A + + G ++
Sbjct: 94 IIGATVEEDVAFSLEIM---GLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLA 150
Query: 243 XXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPS 302
+ D L LDEP+S LD S + +VL+ + G +I+ H+
Sbjct: 151 IASM---------LARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELE 201
Query: 303 HRILSLLDRLIFLSNG 318
+ L +D ++ +SNG
Sbjct: 202 Y--LDDMDFILHISNG 215
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 97/226 (42%), Gaps = 20/226 (8%)
Query: 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIIS-AYVMQDD 184
+GE A+LG SGS K+TL+ IAG I K G + + + + K + V Q+
Sbjct: 27 KDGEFMALLGPSGSGKSTLLYTIAG-IYKPT-SGKIYFDEKDVTELPPKDRNVGLVFQNW 84
Query: 185 LLYSMLTIEETLMFSAEFR-LPRSLSKEKKRKRVDAL-IDQLGLRSAAMTIIGDEQHXXX 242
LY +T+ + + F E R PR +K R+ L ID+L R G +Q
Sbjct: 85 ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAI 144
Query: 243 XXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPS 302
++ +P +L LDEP+S LD+ V LK++ K I + +
Sbjct: 145 ARA----------LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ 194
Query: 303 HRILSLLDRLIFLSNGQAVCSEAPSNL-----SQFFGAFGHRIPEN 343
L++ DR+ + G+ + P + +F G F P N
Sbjct: 195 AEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLGNPPMN 240
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 30/206 (14%)
Query: 121 ISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIIS--- 177
IS +GE +I+GASGS K+TL+ I G + +G V L G+ + K +S
Sbjct: 23 ISLSVKKGEFVSIIGASGSGKSTLL-YILGLLDAPT-EGKVFLEGKEVDYTNEKELSLLR 80
Query: 178 ----AYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL----RSA 229
+V Q L LT E ++ L K++ ++R + L+ +LGL
Sbjct: 81 NRKLGFVFQFHYLIPELTALENVIVPM---LKMGKPKKEAKERGEYLLSELGLGDKLSRK 137
Query: 230 AMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK 289
+ G EQ + ++PILLF DEP LDS + V+ + +I +
Sbjct: 138 PYELSGGEQQRVAIARA---------LANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 290 SGSIVIMSIHQP-----SHRILSLLD 310
G+ ++M H+ +HR L + D
Sbjct: 189 GGTSIVMVTHERELAELTHRTLEMKD 214
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 121 ISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGE-VLGSKLLKIIS-A 178
+S V +EGE + G +GS K+TL+ +AG I + G V +GE G ++ + I A
Sbjct: 28 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLI--EPTSGDVLYDGERKKGYEIRRNIGIA 85
Query: 179 YVMQDDLLYSMLTIEETLMFSAEF---RLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235
+ +D ++ +E F R P L K K + V D R G
Sbjct: 86 FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK-KAMEFVGLDFDSFKDRVPFFLSGG 144
Query: 236 DEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVI 295
+++ I+H+P +L LDEP+ GLD ++++++++ G VI
Sbjct: 145 EKRRVAIASV----------IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 194
Query: 296 MSIHQPSHRILSLLDRLIFLSNGQAV 321
+ H +++ +DR++ L G+ V
Sbjct: 195 LISHD-IETVINHVDRVVVLEKGKKV 219
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 121 ISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGE-VLGSKLLKIIS-A 178
+S V +EGE + G +GS K+TL+ +AG I + G V +GE G ++ + I A
Sbjct: 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLI--EPTSGDVLYDGERKKGYEIRRNIGIA 83
Query: 179 YVMQDDLLYSMLTIEETLMFSAEF---RLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235
+ +D ++ +E F R P L K K + V D R G
Sbjct: 84 FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK-KAMEFVGLDFDSFKDRVPFFLSGG 142
Query: 236 DEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVI 295
+++ I+H+P +L LDEP+ GLD ++++++++ G VI
Sbjct: 143 EKRRVAIASV----------IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 192
Query: 296 MSIHQPSHRILSLLDRLIFLSNGQAV 321
+ H +++ +DR++ L G+ V
Sbjct: 193 LISHD-IETVINHVDRVVVLEKGKKV 217
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 19/208 (9%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIIS----AYVMQD 183
G+I ++GA+G+ KTT + AIAG + Q KG + NG+ + +K +I+ A V +
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQ--KGKIIFNGQDITNKPAHVINRXGIALVPEG 89
Query: 184 DLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLG--LRSAAMTIIGDEQHXX 241
++ LT+ E L A R + K + + + +L +L L+ T+ G EQ
Sbjct: 90 RRIFPELTVYENLXXGAYNRKDKEGIK-RDLEWIFSLFPRLKERLKQLGGTLSGGEQQXL 148
Query: 242 XXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQP 301
+ P LL DEP GL V +V+++I + G+ +++ + Q
Sbjct: 149 AIGRA---------LXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL-VEQN 198
Query: 302 SHRILSLLDRLIFLSNGQAVCSEAPSNL 329
+ L + L GQ V S L
Sbjct: 199 ALGALKVAHYGYVLETGQIVLEGKASEL 226
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/212 (23%), Positives = 95/212 (44%), Gaps = 23/212 (10%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK---LLKIIS--AYVM 181
EGE+ ++G SGS K+T + + + + +G + ++G L +K L K+ V
Sbjct: 28 EGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVF 85
Query: 182 QDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM----TIIGDE 237
Q L+ +T+ + A ++ R +EK + L+D++GL+ A ++ G +
Sbjct: 86 QRFNLFPHMTVLNNITL-APMKV-RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQ 143
Query: 238 QHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMS 297
+ +P ++ DEP S LD V+ V+KQ+A G +++
Sbjct: 144 AQRVAIARA---------LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 194
Query: 298 IHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329
H+ + DR++F+ G + P +L
Sbjct: 195 THEMGF-AREVGDRVLFMDGGYIIEEGKPEDL 225
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 15/207 (7%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIIS-----AYVMQ 182
GEI I+GASG KTTL+ +AG +Q G ++L+G+ + SK + Y++Q
Sbjct: 30 GEILFIIGASGCGKTTLLRCLAG--FEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ 87
Query: 183 DDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXX 242
+ +L+ LT+ + + R+ ++R+R++A+++ G+ A G H
Sbjct: 88 EGVLFPHLTVYRNIAYGLGNGKGRT---AQERQRIEAMLELTGISELA----GRYPHELS 140
Query: 243 XXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPS 302
+ DP L+ LDEP S LD + + + ++ + +
Sbjct: 141 GGQQQRAALARA-LAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR 199
Query: 303 HRILSLLDRLIFLSNGQAVCSEAPSNL 329
L DR+ + G+ + + +P L
Sbjct: 200 EEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 26/213 (12%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIIS------AYVM 181
GE ILG SG+ KTT M IAG G + + ++ S I+ V
Sbjct: 31 GERFGILGPSGAGKTTFMRIIAGLDVPS--TGELYFDDRLVASNGKLIVPPEDRKIGMVF 88
Query: 182 QDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA----AMTIIGDE 237
Q LY LT E + F +SKE+ RKRV+ + L + + G +
Sbjct: 89 QTWALYPNLTAFENIAFPLT---NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQ 145
Query: 238 QHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQI-AKSGSIVIM 296
Q ++ DP LL LDEP S LD+ + ++K++ ++ G +++
Sbjct: 146 QQRVALARA---------LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196
Query: 297 SIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329
H P+ I ++ DR+ L G+ V P +L
Sbjct: 197 VSHDPAD-IFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 19/221 (8%)
Query: 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS---KLLKIISAYVMQ 182
+ GE+ AI+G +G+ K+TL+ + G +S G L G+ L S K L A + Q
Sbjct: 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSPS--HGECHLLGQNLNSWQPKALARTRAVMRQ 92
Query: 183 DDLLYSMLTIEETLMFSAEFRLPRSLSKEKKR-KRVDALIDQLGLRSAAMTII-GDEQHX 240
L ++ E + R P S++++ ++V A D L L ++ G EQ
Sbjct: 93 YSELAFPFSVSEVIQMG---RAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQR 149
Query: 241 XXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQ 300
P LFLDEP S LD + +++L+Q+ + + + +
Sbjct: 150 VQLARVLAQLWQPQPT---PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLH 206
Query: 301 PSHRILSLLDRLIFLSNGQAVCSEAP------SNLSQFFGA 335
+ DR++ L+ G+ V P L+Q++ A
Sbjct: 207 DLNLAALYADRIMLLAQGKLVACGTPEEVLNAETLTQWYQA 247
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 26/213 (12%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIIS------AYVM 181
GE ILG SG+ KTT M IAG G + + ++ S I+ V
Sbjct: 31 GERFGILGPSGAGKTTFMRIIAGLDVPS--TGELYFDDRLVASNGKLIVPPEDRKIGMVF 88
Query: 182 QDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA----AMTIIGDE 237
Q LY LT E + F +SKE+ RKRV+ + L + + G +
Sbjct: 89 QTWALYPNLTAFENIAFPLT---NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQ 145
Query: 238 QHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQI-AKSGSIVIM 296
Q ++ DP LL LDEP S LD+ + ++K++ ++ G +++
Sbjct: 146 QQRVALARA---------LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196
Query: 297 SIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329
H P+ I ++ DR+ L G+ V P +L
Sbjct: 197 VSHDPAD-IFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 24/208 (11%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG-EVLGSKLLKIISAYVMQDDLL 186
GE ILG +G+ KT ++ IAG G + L+G +V K A+V Q+ L
Sbjct: 26 GEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPEKHDIAFVYQNYSL 83
Query: 187 YSMLTIEETLMFSAEFRL---PRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXX 243
+ + +++ L F + P+ + + +++ L+D+ +T+ G EQ
Sbjct: 84 FPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----NPLTLSGGEQQRVAL 138
Query: 244 XXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSI--HQP 301
++ +P +L LDEP+S LD + N ++L + K + ++ I Q
Sbjct: 139 ARA---------LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189
Query: 302 SHRILSLLDRLIFLSNGQAVCSEAPSNL 329
RI++ DR+ + +G+ + P +
Sbjct: 190 EARIMA--DRIAVVMDGKLIQVGKPEEI 215
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 27/219 (12%)
Query: 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK---LLKIISAYVMQ 182
EGEI ++G +G+ KTT + I+ I G VT+ G+ + + + K+IS Y+ +
Sbjct: 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGIVTVFGKNVVEEPHEVRKLIS-YLPE 95
Query: 183 DDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD---EQH 239
+ Y + E L F A F S + I+++ R+ + +G+ ++
Sbjct: 96 EAGAYRNMQGIEYLRFVAGFYASSS-----------SEIEEMVERATEIAGLGEKIKDRV 144
Query: 240 XXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIH 299
++ +P L LDEP SGLD +A V K+LKQ ++ G +++S
Sbjct: 145 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS-- 202
Query: 300 QPSHRILS---LLDRLIFLSNGQAVCSEAPSNLSQFFGA 335
SH +L L DR+ + NG V + L + + A
Sbjct: 203 --SHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 239
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 95/212 (44%), Gaps = 23/212 (10%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK---LLKIIS--AYVM 181
EGE+ ++G SGS K+T + + + + +G + ++G L +K L K+ V
Sbjct: 49 EGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVF 106
Query: 182 QDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM----TIIGDE 237
Q L+ +T+ + A ++ R +EK + L+D++GL+ A ++ G +
Sbjct: 107 QRFNLFPHMTVLNNITL-APMKV-RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQ 164
Query: 238 QHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMS 297
+ +P ++ DEP S LD V+ V+KQ+A G +++
Sbjct: 165 AQRVAIARA---------LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 215
Query: 298 IHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329
H+ + DR++F+ G + P +L
Sbjct: 216 THEMGF-AREVGDRVLFMDGGYIIEEGKPEDL 246
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 45/201 (22%), Positives = 92/201 (45%), Gaps = 16/201 (7%)
Query: 127 EGEITAILGASGSSKTTLMDAIA-------GRISKQRLKGTVTLNGEVLGSKLLKIISAY 179
EGE +I+G SGS K+T+++ I G + +K T L+ + L +K+ + +
Sbjct: 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK-TNDLDDDEL-TKIRRDKIGF 87
Query: 180 VMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239
V Q L +LT E + F+ ++S E++RKR + L + +
Sbjct: 88 VFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----FANHKP 143
Query: 240 XXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQI-AKSGSIVIMSI 298
+ ++P ++ D+P LDS + ++++LK++ + G V++
Sbjct: 144 NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVT 203
Query: 299 HQPSHRILSLLDRLIFLSNGQ 319
H + + +R+I+L +G+
Sbjct: 204 HDIN--VARFGERIIYLKDGE 222
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 21/223 (9%)
Query: 102 LPFVGSQXXXXXXXXXXXXISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161
+ FVG + +S EGE+ +LG SGS KTT++ IAG ++ KG V
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG--LERPTKGDV 72
Query: 162 TLNGE-VLGSKLLKIISAYVMQDDLLYSMLTIEETLMFS-AEFRLPRSLSKEKKRKRVDA 219
+ G+ V K V Q+ L+ +T+ + + F E R+P K++ RV
Sbjct: 73 WIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVP----KDEMDARVRE 128
Query: 220 LIDQLGLRSAA----MTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDST 275
L+ + L S A + G +Q + P +L DEP + +D+
Sbjct: 129 LLRFMRLESYANRFPHELSGGQQQRVALARA---------LAPRPQVLLFDEPFAAIDTQ 179
Query: 276 SAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318
+ ++Q+ + + + L + DR++ L G
Sbjct: 180 IRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEG 222
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRL----KGTVTLNGEVLG---SKLLKIISAY 179
+GE+ I+G SGS K+TL I QR G V ++G L L+
Sbjct: 30 QGEVIGIVGRSGSGKSTLTKLI------QRFYIPENGQVLIDGHDLALADPNWLRRQVGV 83
Query: 180 VMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239
V+QD++L + I+ + + + + + K D + + LR TI+G EQ
Sbjct: 84 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQG 139
Query: 240 XXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIH 299
++++P +L DE S LD S +++ + +I K +++I+
Sbjct: 140 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII--- 196
Query: 300 QPSHRILSL--LDRLIFLSNGQAV 321
+HR+ ++ DR+I + G+ V
Sbjct: 197 --AHRLSTVKNADRIIVMEKGKIV 218
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRL----KGTVTLNGEVLG---SKLLKIISAY 179
+GE+ I+G SGS K+TL I QR G V ++G L L+
Sbjct: 28 QGEVIGIVGRSGSGKSTLTKLI------QRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81
Query: 180 VMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239
V+QD++L + I+ + + + + + K D + + LR TI+G EQ
Sbjct: 82 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQG 137
Query: 240 XXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIH 299
++++P +L DE S LD S +++ + +I K +++I+
Sbjct: 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII--- 194
Query: 300 QPSHRILSL--LDRLIFLSNGQAV 321
+HR+ ++ DR+I + G+ V
Sbjct: 195 --AHRLSTVKNADRIIVMEKGKIV 216
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRL----KGTVTLNGEVLG---SKLLKIISAY 179
+GE+ I+G SGS K+TL I QR G V ++G L L+
Sbjct: 34 QGEVIGIVGRSGSGKSTLTKLI------QRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87
Query: 180 VMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239
V+QD++L + I+ + + + + + K D + + LR TI+G EQ
Sbjct: 88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQG 143
Query: 240 XXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIH 299
++++P +L DE S LD S +++ + +I K +++I+
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII--- 200
Query: 300 QPSHRILSL--LDRLIFLSNGQAV 321
+HR+ ++ DR+I + G+ V
Sbjct: 201 --AHRLSTVKNADRIIVMEKGKIV 222
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 16/207 (7%)
Query: 126 SEGEITAILGASGSSKTTLMDAIA-------GRISKQRLKGTVTLNGEVLGSKLLKIISA 178
EGE +I+G SGS K+T+++ I G + +K T L+ + L +K+ +
Sbjct: 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK-TNDLDDDEL-TKIRRDKIG 86
Query: 179 YVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238
+V Q L +LT E + F+ ++S E++RKR + L + +
Sbjct: 87 FVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----FANHK 142
Query: 239 HXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQI-AKSGSIVIMS 297
+ ++P ++ D+P LDS + ++++LK++ + G V++
Sbjct: 143 PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVV 202
Query: 298 IHQPSHRILSLLDRLIFLSNGQAVCSE 324
H + + +R+I+L +G+ E
Sbjct: 203 THDIN--VARFGERIIYLKDGEVEREE 227
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 96/243 (39%), Gaps = 41/243 (16%)
Query: 121 ISGVASE---GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLL--KI 175
+ GV+ E GE A+LG SG KTT + +AG I K +GE+ +L I
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYK-------PTSGEIYFDDVLVNDI 70
Query: 176 ISAY-----VMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRV-----DALIDQLG 225
Y V Q+ LY +T+ E + F R +SK++ KRV LID L
Sbjct: 71 PPKYREVGMVFQNYALYPHMTVFENIAFPLR---ARRISKDEVEKRVVEIARKLLIDNLL 127
Query: 226 LRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLK 285
R G +Q ++ P +L DEP+S LD+ + +K
Sbjct: 128 DRKPTQLSGGQQQRVALARA----------LVKQPKVLLFDEPLSNLDANLRMIMRAEIK 177
Query: 286 QIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL-----SQFFGAFGHRI 340
+ + I + + +++ R+ + G+ V P + + F +F
Sbjct: 178 HLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNP 237
Query: 341 PEN 343
P N
Sbjct: 238 PTN 240
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 26/206 (12%)
Query: 127 EGEITAILGASGSSKTTLMDAIA-------GRISKQRLKGTVTLNGEVLGSKLLKIISAY 179
EGE +I G SGS K+T ++ I G + +K T L+ + L +K+ + +
Sbjct: 30 EGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIK-TNDLDDDEL-TKIRRDKIGF 87
Query: 180 VMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRV-----DALIDQLGLRSAAMTII 234
V Q L +LT E + F+ + S E++RKR A +++ +
Sbjct: 88 VFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFANHKPNQLS 147
Query: 235 GDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQI-AKSGSI 293
G +Q + ++P ++ DEP LDS + + ++LK++ + G
Sbjct: 148 GGQQQRVAIARA---------LANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKT 198
Query: 294 VIMSIHQPSHRILSLLDRLIFLSNGQ 319
V++ H + + +R+I+L +G+
Sbjct: 199 VVVVTHDIN--VARFGERIIYLKDGE 222
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRL----KGTVTLNGEVLG---SKLLKIISAY 179
+GE+ I+G +GS K+TL I QR G V ++G L L+
Sbjct: 30 QGEVIGIVGRAGSGKSTLTKLI------QRFYIPENGQVLIDGHDLALADPNWLRRQVGV 83
Query: 180 VMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239
V+QD++L + I+ + + + + + K D + + LR TI+G EQ
Sbjct: 84 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQG 139
Query: 240 XXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIH 299
++++P +L DE S LD S +++ + +I K +++I+
Sbjct: 140 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII--- 196
Query: 300 QPSHRILSL--LDRLIFLSNGQAV 321
+HR+ ++ DR+I + G+ V
Sbjct: 197 --AHRLSTVKNADRIIVMEKGKIV 218
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRL----KGTVTLNGEVLG---SKLLKIISAY 179
+GE+ I+G SGS K+TL I QR G V ++G L L+
Sbjct: 34 QGEVIGIVGRSGSGKSTLTKLI------QRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87
Query: 180 VMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239
V+QD++L + I+ + + + + + K D + + LR TI+G EQ
Sbjct: 88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQG 143
Query: 240 XXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIH 299
++++P +L D+ S LD S +++ + +I K +++I+
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIII--- 200
Query: 300 QPSHRILSL--LDRLIFLSNGQAV 321
+HR+ ++ DR+I + G+ V
Sbjct: 201 --AHRLSTVKNADRIIVMEKGKIV 222
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 96/233 (41%), Gaps = 39/233 (16%)
Query: 121 ISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG---EVLGSKLLKIIS 177
+SG GEI ++G +G+ K+TL+ +AG S KG++ G E + L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLALHR 75
Query: 178 AYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKR--------VDALIDQLGLRSA 229
AY+ Q ++T F+ +L + K + AL D+LG RS
Sbjct: 76 AYLSQ----------QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RST 124
Query: 230 AMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPI--LLFLDEPISGLDSTSAFNVVKVLKQI 287
G+ Q +P LL LD+P++ LD + K+L +
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQA-----NPAGQLLLLDQPMNSLDVAQQSALDKILSAL 179
Query: 288 AKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSE------APSNLSQFFG 334
++ G ++MS H +H L R L G+ + S P NL+Q +G
Sbjct: 180 SQQGLAIVMSSHDLNH-TLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYG 231
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 95/233 (40%), Gaps = 39/233 (16%)
Query: 121 ISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG---EVLGSKLLKIIS 177
+SG GEI ++G +G+ K+TL+ +AG S KG++ G E + L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLALHR 75
Query: 178 AYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKR--------VDALIDQLGLRSA 229
AY+ Q ++T F+ +L + K + AL D+LG RS
Sbjct: 76 AYLSQ----------QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RST 124
Query: 230 AMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPI--LLFLDEPISGLDSTSAFNVVKVLKQI 287
G+ Q +P LL LD+P+ LD + K+L +
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQA-----NPAGQLLLLDQPMCSLDVAQQSALDKILSAL 179
Query: 288 AKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSE------APSNLSQFFG 334
++ G ++MS H +H L R L G+ + S P NL+Q +G
Sbjct: 180 SQQGLAIVMSSHDLNH-TLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYG 231
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 20/202 (9%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRL----KGTVTLNGEVLG---SKLLKIISAY 179
+GE+ I+G SGS K+TL I QR G V ++G L L+
Sbjct: 28 QGEVIGIVGRSGSGKSTLTKLI------QRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81
Query: 180 VMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239
V+QD++L + I+ + + + + + K D + + LR TI+G EQ
Sbjct: 82 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQG 137
Query: 240 XXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIH 299
++++P +L DE S LD S +++ + +I K +++I++
Sbjct: 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAAR 197
Query: 300 QPSHRILSLLDRLIFLSNGQAV 321
+ + DR+I + G+ V
Sbjct: 198 LST---VKNADRIIVMEKGKIV 216
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 20/202 (9%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRL----KGTVTLNGEVLG---SKLLKIISAY 179
+GE+ I+G SGS K+TL I QR G V ++G L L+
Sbjct: 34 QGEVIGIVGRSGSGKSTLTKLI------QRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87
Query: 180 VMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239
V+QD++L + I+ + + + + + K D + + LR TI+G EQ
Sbjct: 88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQG 143
Query: 240 XXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIH 299
++++P +L DE S LD S +++ + +I K +++I++
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAAR 203
Query: 300 QPSHRILSLLDRLIFLSNGQAV 321
+ + DR+I + G+ V
Sbjct: 204 LST---VKNADRIIVMEKGKIV 222
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 22/211 (10%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVL-----GSKLLKIISAYVMQ 182
GE+TAILG +G K+TL G + G + + + + G L+ V Q
Sbjct: 34 GEVTAILGGNGVGKSTLFQNFNGILKPS--SGRILFDNKPIDYSRKGIMKLRESIGIVFQ 91
Query: 183 D--DLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHX 240
D + L+S ++ + +LP +++ RKRVD + + G+ + D+
Sbjct: 92 DPDNQLFSASVYQDVSFGAVNMKLP----EDEIRKRVDNALKRTGIEH-----LKDKPTH 142
Query: 241 XXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIH 299
++ +P +L LDEP +GLD ++K+L ++ K G +I++ H
Sbjct: 143 CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202
Query: 300 QPSHRILSL-LDRLIFLSNGQAVCSEAPSNL 329
I+ L D + + G+ + P +
Sbjct: 203 DID--IVPLYCDNVFVMKEGRVILQGNPKEV 231
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 16/199 (8%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG---EVLGSKLLKIISAYVMQDD 184
G+ A++G+SG K+T++ + LKG +T++G + + L+ A V Q+
Sbjct: 444 GQTVALVGSSGCGKSTIISLLLRYYDV--LKGKITIDGVDVRDINLEFLRKNVAVVSQEP 501
Query: 185 LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXX 244
L++ TIEE + E + K + I L + T++GD +
Sbjct: 502 ALFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTL--PNGYNTLVGD-RGTQLSG 557
Query: 245 XXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHR 304
++ +P +L LDE S LD+ S V + L + AK + +I+ +HR
Sbjct: 558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII-----AHR 612
Query: 305 ILSL--LDRLIFLSNGQAV 321
+ ++ D +I NGQ V
Sbjct: 613 LSTIRNADLIISCKNGQVV 631
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 26/226 (11%)
Query: 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIIS-------A 178
+GE +LG SG KTT + IAG R G + + +++ I A
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSR--GQIYIGDKLVADPEKGIFVPPKDRDIA 84
Query: 179 YVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238
V Q LY +T+ + + F + R + +++ +RV + + LGL T + + +
Sbjct: 85 MVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGL-----TELLNRK 136
Query: 239 HXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSI 298
I+ P + +DEP+S LD+ + LK++ + + + +
Sbjct: 137 PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYV 196
Query: 299 HQPSHRILSLLDRLIFLSNG--QAVCS-----EAPSN--LSQFFGA 335
+++ DR+ ++ G Q V S + P+N ++ F G+
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGS 242
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 93/233 (39%), Gaps = 39/233 (16%)
Query: 121 ISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG---EVLGSKLLKIIS 177
+SG GEI ++G +G+ K+TL+ AG S KG++ G E + L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLALHR 75
Query: 178 AYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKR--------VDALIDQLGLRSA 229
AY+ Q ++T F+ +L + K + AL D+LG RS
Sbjct: 76 AYLSQ----------QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RST 124
Query: 230 AMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPI--LLFLDEPISGLDSTSAFNVVKVLKQI 287
G+ Q +P LL LDEP + LD + K+L +
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQA-----NPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
Query: 288 AKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSE------APSNLSQFFG 334
++ G ++ S H +H L R L G+ + S P NL+Q +G
Sbjct: 180 SQQGLAIVXSSHDLNH-TLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAYG 231
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 92/233 (39%), Gaps = 39/233 (16%)
Query: 121 ISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG---EVLGSKLLKIIS 177
+SG GEI ++G +G+ K+TL+ AG S KG++ G E + L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLALHR 75
Query: 178 AYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKR--------VDALIDQLGLRSA 229
AY+ Q ++T F+ +L + K + AL D+LG RS
Sbjct: 76 AYLSQ----------QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RST 124
Query: 230 AMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPI--LLFLDEPISGLDSTSAFNVVKVLKQI 287
G+ Q +P LL LDEP + LD + K+L +
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQA-----NPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
Query: 288 AKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSE------APSNLSQFFG 334
+ G ++ S H +H L R L G+ + S P NL+Q +G
Sbjct: 180 CQQGLAIVXSSHDLNH-TLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAYG 231
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/235 (19%), Positives = 102/235 (43%), Gaps = 13/235 (5%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLY 187
G+I ++GASG+ K+TL+ + + ++ +G+V ++G+ L + ++ Q +++
Sbjct: 31 GQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIF 88
Query: 188 SMLTIEETLMFSAEFRLPRSLS---KEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXX 244
+ + LP L K++ ++RV L+ +GL D
Sbjct: 89 QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----DSYPSNLSG 143
Query: 245 XXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHR 304
+ +P +L DE S LD + +++++LK I + + I+ I
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 203
Query: 305 ILSLLDRLIFLSNGQAVCSEAPSNLSQFFGAFGHRIPENENQAEFALDLIRDLED 359
+ + D + +SNG+ + + +S+ F + + Q+ LD+ D ++
Sbjct: 204 VKRICDCVAVISNGELIEQDT---VSEVFSHPKTPLAQKFIQSTLHLDIPEDYQE 255
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 79/201 (39%), Gaps = 17/201 (8%)
Query: 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKII-------SA 178
+GE +LG SG KTT + IAG ++ +G + + ++ + A
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRXIAG--LEEPTRGQIYIEDNLVADPEKGVFVPPKERDVA 87
Query: 179 YVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238
V Q LY T+ + + F + R + K++ KRV + + LGL T + + +
Sbjct: 88 XVFQSYALYPHXTVYDNIAFPLKL---RKVPKQEIDKRVREVAEXLGL-----TELLNRK 139
Query: 239 HXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSI 298
II P + DEP+S LD+ LK++ + + + +
Sbjct: 140 PRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYV 199
Query: 299 HQPSHRILSLLDRLIFLSNGQ 319
+ DR+ + G+
Sbjct: 200 THDQVEAXTXGDRIAVXNKGE 220
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/235 (19%), Positives = 102/235 (43%), Gaps = 13/235 (5%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLY 187
G+I ++GASG+ K+TL+ + + ++ +G+V ++G+ L + ++ Q +++
Sbjct: 54 GQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIF 111
Query: 188 SMLTIEETLMFSAEFRLPRSLS---KEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXX 244
+ + LP L K++ ++RV L+ +GL D
Sbjct: 112 QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----DSYPSNLSG 166
Query: 245 XXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHR 304
+ +P +L D+ S LD + +++++LK I + + I+ I
Sbjct: 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 226
Query: 305 ILSLLDRLIFLSNGQAVCSEAPSNLSQFFGAFGHRIPENENQAEFALDLIRDLED 359
+ + D + +SNG+ + + +S+ F + + Q+ LD+ D ++
Sbjct: 227 VKRICDCVAVISNGELIEQDT---VSEVFSHPKTPLAQKFIQSTLHLDIPEDYQE 278
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 21/212 (9%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIIS------AYV 180
EGE +G SG K+TL+ IAG T+T +G K + V
Sbjct: 28 EGEFVVFVGPSGCGKSTLLRMIAGL-------ETITSGDLFIGEKRMNDTPPAERGVGMV 80
Query: 181 MQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHX 240
Q LY L++ E + F + KE +RV+ + + L L + D +
Sbjct: 81 FQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAH-----LLDRKPK 132
Query: 241 XXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQ 300
++ +P + LDEP+S LD+ + + ++ K ++ +
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
Query: 301 PSHRILSLLDRLIFLSNGQAVCSEAPSNLSQF 332
++L D+++ L G+ P L +
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 21/212 (9%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIIS------AYV 180
EGE +G SG K+TL+ IAG T+T +G K + V
Sbjct: 28 EGEFVVFVGPSGCGKSTLLRMIAGL-------ETITSGDLFIGEKRMNDTPPAERGVGMV 80
Query: 181 MQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHX 240
Q LY L++ E + F + KE +RV+ + + L L + D +
Sbjct: 81 FQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAH-----LLDRKPK 132
Query: 241 XXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQ 300
++ +P + LDEP+S LD+ + + ++ K ++ +
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
Query: 301 PSHRILSLLDRLIFLSNGQAVCSEAPSNLSQF 332
++L D+++ L G+ P L +
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/235 (19%), Positives = 101/235 (42%), Gaps = 13/235 (5%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLY 187
G+I ++GASG+ K+TL+ + + ++ +G+V ++G+ L + ++ Q ++
Sbjct: 54 GQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIF 111
Query: 188 SMLTIEETLMFSAEFRLPRSLS---KEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXX 244
+ + LP L K++ ++RV L+ +GL D
Sbjct: 112 QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----DSYPSNLSG 166
Query: 245 XXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHR 304
+ +P +L D+ S LD + +++++LK I + + I+ I
Sbjct: 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDV 226
Query: 305 ILSLLDRLIFLSNGQAVCSEAPSNLSQFFGAFGHRIPENENQAEFALDLIRDLED 359
+ + D + +SNG+ + + +S+ F + + Q+ LD+ D ++
Sbjct: 227 VKRICDCVAVISNGELIEQDT---VSEVFSHPKTPLAQKFIQSTLHLDIPEDYQE 278
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 90/209 (43%), Gaps = 19/209 (9%)
Query: 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGE---VLGSKLLKIISAYVMQ 182
+GE +LG SG KTT + IAG ++ +G + L K I + V Q
Sbjct: 35 KDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGRIYFGDRDVTYLPPKDRNI--SMVFQ 90
Query: 183 DDLLYSMLTIEETLMFSAEFR-LPRSLSKEKKRKRVDAL-IDQLGLRSAAMTIIGDEQHX 240
++ +T+ E + F + + P+ ++ R + L I++L R A G Q
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV 150
Query: 241 XXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQ 300
I+ +P +L +DEP+S LD+ + +K++ + + + +
Sbjct: 151 AVARA----------IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 301 PSHRILSLLDRLIFLSNGQAVCSEAPSNL 329
+++ DR+ ++ GQ + +P+ +
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 90/209 (43%), Gaps = 19/209 (9%)
Query: 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGE---VLGSKLLKIISAYVMQ 182
+GE +LG SG KTT + IAG ++ +G + L K I + V Q
Sbjct: 36 KDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGRIYFGDRDVTYLPPKDRNI--SMVFQ 91
Query: 183 DDLLYSMLTIEETLMFSAEFR-LPRSLSKEKKRKRVDAL-IDQLGLRSAAMTIIGDEQHX 240
++ +T+ E + F + + P+ ++ R + L I++L R A G Q
Sbjct: 92 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV 151
Query: 241 XXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQ 300
I+ +P +L +DEP+S LD+ + +K++ + + + +
Sbjct: 152 AVARA----------IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 301 PSHRILSLLDRLIFLSNGQAVCSEAPSNL 329
+++ DR+ ++ GQ + +P+ +
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 81/212 (38%), Gaps = 21/212 (9%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIIS------AYV 180
EGE +G SG K+TL+ IAG T+T +G K + V
Sbjct: 28 EGEFVVFVGPSGCGKSTLLRMIAGL-------ETITSGDLFIGEKRMNDTPPAERGVGMV 80
Query: 181 MQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHX 240
Q LY L++ E + F + KE +RV+ + + L L + D +
Sbjct: 81 FQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAH-----LLDRKPK 132
Query: 241 XXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQ 300
++ +P + LD+P+S LD+ + + ++ K ++ +
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
Query: 301 PSHRILSLLDRLIFLSNGQAVCSEAPSNLSQF 332
++L D+++ L G+ P L +
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 87/182 (47%), Gaps = 20/182 (10%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRL----KGTVTLNGE---VLGSKLLKIISAYV 180
G +TA++G SGS K+T++ + RL GT++L+G L L+ V
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL------RLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 454
Query: 181 MQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM---TIIGDE 237
Q+ +L+S +I E + + A+ P S++ E+ ++ + +R+ T++G E
Sbjct: 455 SQEPILFS-CSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG-E 510
Query: 238 QHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMS 297
+ ++ +P +L LDE S LD+ + + V + L ++ ++++++
Sbjct: 511 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIA 570
Query: 298 IH 299
H
Sbjct: 571 HH 572
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 22/170 (12%)
Query: 171 KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAA 230
+LL+ V Q L+S +T+ E +M + L LSK R+R + ++G+ A
Sbjct: 89 RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERA 146
Query: 231 -----MTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLK 285
+ + G +Q + +P +L DEP S LD V+++++
Sbjct: 147 QGKYPVHLSGGQQQRVSIARA---------LAMEPDVLLFDEPTSALDPELVGEVLRIMQ 197
Query: 286 QIAKSGSIVIMSIHQPSH-RILSLLDRLIFLSNGQAVCSEAPSNLSQFFG 334
Q+A+ G +++ H+ R +S +IFL G+ E + Q FG
Sbjct: 198 QLAEEGKTMVVVTHEMGFARHVS--SHVIFLHQGKI---EEEGDPEQVFG 242
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 37.0 bits (84), Expect = 0.040, Method: Composition-based stats.
Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 32/223 (14%)
Query: 133 ILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG-EVLGSKLLKIISAYVMQDDLLYSMLT 191
+LG +G+ K+ ++ IAG + R G V LNG ++ + +V QD L+ L+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDR--GEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 192 IEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-----RSAAMTIIGDEQHXXXXXXX 246
+ + + R++ + ++ +RV + ++LG+ R A G+ Q
Sbjct: 87 VYRNIAYGL-----RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA- 140
Query: 247 XXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRIL 306
++ P LL LDEP+S +D + +++ L+ + + + I+ +
Sbjct: 141 ---------LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191
Query: 307 SLLDRLIFLSNGQAVCSEAPSNLSQFFGAFGHRIPENENQAEF 349
L D + + NG+ V L + F A +N AEF
Sbjct: 192 MLADEVAVMLNGRIV---EKGKLKELFSA------KNGEVAEF 225
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 122 SGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAY 179
+G A EGEI ILG +G KTT + G I+ +G+VT ++L K +I Y
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITAD--EGSVTPEKQILSYKPQRIFPNY 343
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 24/228 (10%)
Query: 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEV-LGSKLLKIISAYVMQDD 184
++G+I A+LG +G K+TL+D + G + ++G + + + + AY + D
Sbjct: 29 NKGDILAVLGQNGCGKSTLLDLLLG--IHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDI 86
Query: 185 LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDAL-IDQLGLRSAAMTIIGDEQHXXXX 243
+L T T F P+S + + +D L + L R G Q
Sbjct: 87 VLMGRSTHINT------FAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQ----- 135
Query: 244 XXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSI-VIMSIHQPS 302
I + L+ LDEP S LD + V+ +L +A+S ++ V+ + HQP+
Sbjct: 136 -----LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
Query: 303 HRILSLLDRLIFLSNGQAVCSEAPSNL-SQFFGAFGHRIPENENQAEF 349
+++++ ++ + L+ E + L S+ A H +P E QA++
Sbjct: 191 -QVVAIANKTLLLNKQNFKFGETRNILTSENLTALFH-LPMFEQQAQY 236
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 18/182 (9%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRL----KGTVTLNGE---VLGSKLLKIISAYV 180
G+ A++G SG K+T + + QRL G V+++G+ + + L+ I V
Sbjct: 416 GQTVALVGNSGCGKSTTVQLM------QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVV 469
Query: 181 MQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHX 240
Q+ +L++ TI E + + E + EK K +A + L T++G E+
Sbjct: 470 SQEPVLFAT-TIAENIRYGREDVTMDEI--EKAVKEANAYDFIMKLPHQFDTLVG-ERGA 525
Query: 241 XXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQ 300
++ +P +L LDE S LD+ S VV+ A+ G I+ H+
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE-AVVQAALDKAREGRTTIVIAHR 584
Query: 301 PS 302
S
Sbjct: 585 LS 586
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 22/202 (10%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGE---VLGSKLLKIISAYVMQD 183
+G+ A++G+SG K+T++ + + G+V L+G+ L + L+ V Q+
Sbjct: 1058 KGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKEIKQLNVQWLRAQLGIVSQE 1115
Query: 184 DLLYSMLTIEETLMFSAEFR------LPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237
+L+ +I E + + R + R+ + + +D+L D+ R +GD
Sbjct: 1116 PILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTR------VGD- 1167
Query: 238 QHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMS 297
+ ++ P +L LDE S LD+ S V + L + A+ G I+
Sbjct: 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVI 1226
Query: 298 IHQPSHRILSLLDRLIFLSNGQ 319
H+ S + D ++ + NG+
Sbjct: 1227 AHRLS--TIQNADLIVVIQNGK 1246
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRL----KGTVTLNGE---VLGSKLLKIISAYV 180
G +TA++G SGS K+T++ + RL GT++L+G L L+ V
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL------RLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 423
Query: 181 MQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM---TIIGDE 237
Q+ +L+S +I E + + A+ P S++ E+ ++ + +R+ T++G E
Sbjct: 424 SQEPILFS-CSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG-E 479
Query: 238 QHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMS 297
+ ++ +P +L LDE S LD+ + + V + L ++ +++++
Sbjct: 480 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVI- 538
Query: 298 IHQPSHRI 305
+HR+
Sbjct: 539 ----AHRL 542
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 18/182 (9%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRL----KGTVTLNGE---VLGSKLLKIISAYV 180
G+ A++G SG K+T + + QRL G V+++G+ + + L+ I V
Sbjct: 416 GQTVALVGNSGCGKSTTVQLM------QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVV 469
Query: 181 MQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHX 240
Q+ +L++ TI E + + E + EK K +A + L T++G E+
Sbjct: 470 SQEPVLFAT-TIAENIRYGREDVTMDEI--EKAVKEANAYDFIMKLPHQFDTLVG-ERGA 525
Query: 241 XXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQ 300
++ +P +L LDE S LD+ S VV+ A+ G I+ H+
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE-AVVQAALDKAREGRTTIVIAHR 584
Query: 301 PS 302
S
Sbjct: 585 LS 586
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 22/202 (10%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGE---VLGSKLLKIISAYVMQD 183
+G+ A++G+SG K+T++ + + G+V L+G+ L + L+ V Q+
Sbjct: 1058 KGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKEIKQLNVQWLRAQLGIVSQE 1115
Query: 184 DLLYSMLTIEETLMFSAEFR------LPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237
+L+ +I E + + R + R+ + + +D+L D+ R +GD
Sbjct: 1116 PILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTR------VGD- 1167
Query: 238 QHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMS 297
+ ++ P +L LDE S LD+ S V + L + A+ G I+
Sbjct: 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVI 1226
Query: 298 IHQPSHRILSLLDRLIFLSNGQ 319
H+ S + D ++ + NG+
Sbjct: 1227 AHRLS--TIQNADLIVVIQNGK 1246
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVL 168
GE+ AI+G +GS K+TL +AGR + GTV G+ L
Sbjct: 27 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 67
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVL 168
GE+ AI+G +GS K+TL +AGR + GTV G+ L
Sbjct: 46 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 38/215 (17%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLY 187
G++TA++G +GS K+T+ + Q G V L+GE L +Q D Y
Sbjct: 45 GKVTALVGPNGSGKSTVAALLQNLY--QPTGGKVLLDGEPL------------VQYDHHY 90
Query: 188 SMLTI----EETLMFSAEFR--LPRSLSKEKKRKRVDALIDQLGLR-------SAAMTII 234
+ +E L+F FR + L++ + + A+ + G T +
Sbjct: 91 LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEV 150
Query: 235 GDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGS-I 293
G E +I P LL LD+ S LD+ + V ++L + + S
Sbjct: 151 G-ETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRT 209
Query: 294 VIMSIHQPSHRILSLLDR---LIFLSNGQAVCSEA 325
V++ HQ LSL +R ++FL G +VC +
Sbjct: 210 VLLITHQ-----LSLAERAHHILFLKEG-SVCEQG 238
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 101/225 (44%), Gaps = 17/225 (7%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG-EVLGSKL--LKIISAYVMQD 183
+G+ A++G SGS K+T+ + G++ L+G +V KL L+ A V Q+
Sbjct: 368 QGKTVALVGRSGSGKSTIANLFTRFYDVD--SGSICLDGHDVRDYKLTNLRRHFALVSQN 425
Query: 184 DLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXX 243
L++ TI + ++AE R E+ ++ A+ + T+IG E
Sbjct: 426 VHLFND-TIANNIAYAAEGEYTRE-QIEQAARQAHAMEFIENMPQGLDTVIG-ENGTSLS 482
Query: 244 XXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSH 303
++ D +L LDE S LD+ S + L ++ K+ +++++ +H
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVI-----AH 537
Query: 304 RILSL--LDRLIFLSNGQAVCSEAPSNLSQFFGAFG--HRIPENE 344
R+ ++ D ++ + G+ + ++L GA+ HRI E
Sbjct: 538 RLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQFGE 582
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 16/217 (7%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKL---LKIISAYVMQD 183
+GE A +G SG K+TL++ I G + ++G + L L+ V QD
Sbjct: 366 KGETVAFVGMSGGGKSTLINLIPRFYDVT--SGQILIDGHNIKDFLTGSLRNQIGLVQQD 423
Query: 184 DLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXX 243
++L+S T++E ++ + + K I + L T +G E+
Sbjct: 424 NILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLPQGYDTEVG-ERGVKLS 479
Query: 244 XXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSH 303
+++P +L LDE S LD S + + L ++K + +I+ +H
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIV-----AH 534
Query: 304 RI--LSLLDRLIFLSNGQAVCSEAPSNLSQFFGAFGH 338
R+ ++ D+++ + NG V + L GA+ H
Sbjct: 535 RLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEH 571
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 25/213 (11%)
Query: 121 ISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISA-- 178
IS A I A G SG K+T+ ++ R Q G +T++G+ + + L+ +
Sbjct: 21 ISFEAQPNSIIAFAGPSGGGKSTIF-SLLERF-YQPTAGEITIDGQPIDNISLENWRSQI 78
Query: 179 -YVMQDDLLYSMLTIEETLMFSAEFR-----LPRSLSKEKKRKRVDALIDQLGLRSAAMT 232
+V QD + + TI E L + E L + L R V+ + DQL T
Sbjct: 79 GFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLN------T 131
Query: 233 IIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGS 292
+G E+ + +P +L LDE + LDS S V K L + K +
Sbjct: 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRT 190
Query: 293 IVIMSIHQPSHRILSLL--DRLIFLSNGQAVCS 323
+++ +HR+ +++ D++ F+ GQ S
Sbjct: 191 TLVI-----AHRLSTIVDADKIYFIEKGQITGS 218
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 256 IIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRI--LSLLDRLI 313
++ DP ++ DE S LDS + + K ++ + K+ +++I+ +HR+ +S + +I
Sbjct: 170 LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIII-----AHRLSTISSAESII 224
Query: 314 FLSNGQAVCSEAPSNLSQFFGAF 336
L+ G+ V +L + G +
Sbjct: 225 LLNKGKIVEKGTHKDLLKLNGEY 247
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 42/225 (18%)
Query: 127 EGEITAILGASGSSKTTLMDAIA------GRISKQRL----KGTVTLNGEVLGSKLLKII 176
E +TAI+G S S K+T+++A+ GRI R+ K +T+ E L K I
Sbjct: 33 ENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEI 92
Query: 177 S--AYVMQDDLLYSMLTIE--ETLMFSAEFRLPRS--LSKEKKRKRVDALIDQLGLRSAA 230
+ Q L +M IE + + + R S + K ++ R+ L + L S
Sbjct: 93 ALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEAVLNSYP 152
Query: 231 MTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS 290
+ + G + ++ DP++L LDEP S LD + +++++LK++ K
Sbjct: 153 LQLSGGMKQRVLIALA---------LLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKM 203
Query: 291 GSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLSQFFGA 335
I LIF+++ AV +E ++ +G
Sbjct: 204 LKIT-----------------LIFVTHDIAVAAELADKVAVIYGG 231
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 20/200 (10%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTV-TLNGEVLGSKLLKIISAYVMQDDLL 186
G + A+LG +GS K+TLM+ I I +R + V L+ + K L+ + V Q+ +L
Sbjct: 369 GSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL 428
Query: 187 YSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQL------GLRSAAMTIIGDEQHX 240
+S TI+E L + E + + K ++ I L + G ++
Sbjct: 429 FSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487
Query: 241 XXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQ 300
++ P +L LD+ S +D + ++ LK+ K + I++
Sbjct: 488 LSIARA---------LVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKI 538
Query: 301 PSHRILSLLDRLIFLSNGQA 320
P+ L D+++ L G+
Sbjct: 539 PTA---LLADKILVLHEGKV 555
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 39/209 (18%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS---KLLKIISAYVMQDD 184
GE+TA++G +GS K+T+ + Q G + L+G+ L + L A V Q+
Sbjct: 43 GEVTALVGPNGSGKSTVAALLQNLY--QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEP 100
Query: 185 LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG--------- 235
++ +++E + + L+++ + + A ++S A + I
Sbjct: 101 QVFGR-SLQENIAYG--------LTQKPTMEEITAA----AVKSGAHSFISGLPQGYDTE 147
Query: 236 -DEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK--SGS 292
DE +I P +L LD+ S LD+ S V ++L + + S S
Sbjct: 148 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 207
Query: 293 IVIMSIHQPSHRILSLL---DRLIFLSNG 318
+++++ H LSL+ D ++FL G
Sbjct: 208 VLLITQH------LSLVEQADHILFLEGG 230
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 24/165 (14%)
Query: 122 SGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVM 181
G S+ EI ++G +G+ KTTL+ +AG + + LN + K+ V
Sbjct: 372 EGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVR 431
Query: 182 QDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXX 241
Q L + + +F P+ + K R+D +IDQ + QH
Sbjct: 432 Q--LFFKKI--------RGQFLNPQFQTDVVKPLRIDDIIDQ------------EVQHLS 469
Query: 242 XXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQ 286
I D + +DEP + LDS KV+++
Sbjct: 470 GGELQRVAIVLALGIPAD--IYLIDEPSAYLDSEQRIICSKVIRR 512
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 124 VASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGE 166
V +GE+ A++G +G+ K+TL +AG +G + L+GE
Sbjct: 25 VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGE 67
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 90/209 (43%), Gaps = 14/209 (6%)
Query: 125 ASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAY----V 180
++G++T I+G +GS K+TL++ I G + +G V + + +K + Y
Sbjct: 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELYHYGIVRT 87
Query: 181 MQDDLLYSMLTIEETLMFS----AEFRLPRSLSKEKKRKRVDALIDQLG--LRSAAMTII 234
Q +T+ E L+ E L SL +K + + ++++ L ++ +
Sbjct: 88 FQTPQPLKEMTVLENLLIGEICPGESPL-NSLFYKKWIPKEEEMVEKAFKILEFLKLSHL 146
Query: 235 GDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIV 294
D + ++ +P ++ +DEPI+G+ A ++ + ++ G I
Sbjct: 147 YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG-IT 205
Query: 295 IMSIHQPSHRILSLLDRLIFLSNGQAVCS 323
+ I +L+ +D L + NGQ +
Sbjct: 206 FLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 89/207 (42%), Gaps = 14/207 (6%)
Query: 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAY----VMQ 182
+G++T I+G +GS K+TL++ I G + +G V + + +K + Y Q
Sbjct: 32 KGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELYHYGIVRTFQ 89
Query: 183 DDLLYSMLTIEETLMFS----AEFRLPRSLSKEKKRKRVDALIDQLG--LRSAAMTIIGD 236
+T+ E L+ E L SL +K + + ++++ L ++ + D
Sbjct: 90 TPQPLKEMTVLENLLIGEINPGESPL-NSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD 148
Query: 237 EQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIM 296
+ ++ +P ++ +DEPI+G+ A ++ + ++ G I +
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG-ITFL 207
Query: 297 SIHQPSHRILSLLDRLIFLSNGQAVCS 323
I +L+ +D L + NGQ +
Sbjct: 208 IIEHRLDIVLNYIDHLYVMFNGQIIAE 234
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG 165
GE ILG +GS KTTL+ AI+G + G + +NG
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLLP---YSGNIFING 64
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 88/200 (44%), Gaps = 18/200 (9%)
Query: 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG----EVLGSKLLKIISAYVMQD 183
G+ A++G +GS KTT+++ + R G + ++G ++ S L I V+QD
Sbjct: 381 GQKVALVGPTGSGKTTIVNLLMRFYDVDR--GQILVDGIDIRKIKRSSLRSSI-GIVLQD 437
Query: 184 DLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXX 243
+L+S T++E L + + + K D I L T++ D
Sbjct: 438 TILFST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLP--EGYETVLTDNGEDLSQ 494
Query: 244 XXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSH 303
+ +P +L LDE S +D+ + ++ + ++ + + +I+ +H
Sbjct: 495 GQRQLLAITRA-FLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIII-----AH 548
Query: 304 RILSL--LDRLIFLSNGQAV 321
R+ ++ D +I L +G+ V
Sbjct: 549 RLNTIKNADLIIVLRDGEIV 568
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 90/209 (43%), Gaps = 14/209 (6%)
Query: 125 ASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAY----V 180
++G++T I+G +GS K+TL++ I G + +G V + + +K + Y
Sbjct: 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELYHYGIVRT 87
Query: 181 MQDDLLYSMLTIEETLMFS----AEFRLPRSLSKEKKRKRVDALIDQLG--LRSAAMTII 234
Q +T+ E L+ E L SL +K + + ++++ L ++ +
Sbjct: 88 FQTPQPLKEMTVLENLLIGEINPGESPL-NSLFYKKWIPKEEEMVEKAFKILEFLKLSHL 146
Query: 235 GDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIV 294
D + ++ +P ++ +D+PI+G+ A ++ + ++ G I
Sbjct: 147 YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKG-IT 205
Query: 295 IMSIHQPSHRILSLLDRLIFLSNGQAVCS 323
+ I +L+ +D L + NGQ +
Sbjct: 206 FLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 130 ITAILGASGSSKTTLMDAIA---GRISKQRLKGTVTLNGEVLGSK-LLKIISAYV 180
+TAI+G +GS K+ ++DAI G SK+ L+ + + GS+ L SAYV
Sbjct: 26 VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYV 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,323,193
Number of Sequences: 62578
Number of extensions: 622762
Number of successful extensions: 1528
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1425
Number of HSP's gapped (non-prelim): 104
length of query: 737
length of database: 14,973,337
effective HSP length: 106
effective length of query: 631
effective length of database: 8,340,069
effective search space: 5262583539
effective search space used: 5262583539
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)