Query 036088
Match_columns 737
No_of_seqs 525 out of 3746
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 3E-108 7E-113 950.7 60.8 587 78-734 21-611 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 1E-104 2E-109 929.4 63.4 576 113-734 36-616 (617)
3 PLN03211 ABC transporter G-25; 100.0 3E-103 7E-108 917.6 66.7 601 78-729 35-656 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 5E-102 1E-106 970.0 65.7 616 81-734 758-1393(1394)
5 PLN03140 ABC transporter G fam 100.0 8E-101 2E-105 955.7 66.5 594 77-732 862-1467(1470)
6 TIGR00956 3a01205 Pleiotropic 100.0 4E-101 9E-106 961.4 61.5 632 79-731 26-694 (1394)
7 KOG0065 Pleiotropic drug resis 100.0 2E-102 4E-107 915.0 42.6 578 113-712 802-1391(1391)
8 PLN03140 ABC transporter G fam 100.0 5.6E-98 1E-102 930.1 59.4 600 80-731 129-789 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 1.7E-90 3.6E-95 814.2 43.2 588 112-731 125-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 8.9E-54 1.9E-58 420.3 24.3 218 82-329 2-223 (240)
11 COG1135 AbcC ABC-type metal io 100.0 4.3E-50 9.4E-55 412.8 22.6 222 82-329 1-229 (339)
12 COG1125 OpuBA ABC-type proline 100.0 9.6E-50 2.1E-54 398.9 20.7 221 82-331 1-225 (309)
13 COG1127 Ttg2A ABC-type transpo 100.0 4.8E-49 1E-53 392.5 23.3 223 80-331 6-235 (263)
14 COG1120 FepC ABC-type cobalami 100.0 7.1E-49 1.5E-53 403.8 21.9 221 82-330 2-227 (258)
15 COG1131 CcmA ABC-type multidru 100.0 3.8E-48 8.2E-53 412.9 26.4 224 82-335 4-230 (293)
16 COG1136 SalX ABC-type antimicr 100.0 5.1E-48 1.1E-52 390.2 24.8 212 82-320 1-220 (226)
17 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.2E-48 1.1E-52 395.5 25.1 220 81-330 3-226 (254)
18 COG3842 PotA ABC-type spermidi 100.0 2E-48 4.4E-53 416.8 22.4 233 81-351 4-238 (352)
19 COG1116 TauB ABC-type nitrate/ 100.0 4.3E-48 9.4E-53 391.0 23.0 204 82-318 3-207 (248)
20 COG3839 MalK ABC-type sugar tr 100.0 4.8E-48 1E-52 411.9 24.3 219 82-331 3-223 (338)
21 COG3638 ABC-type phosphate/pho 100.0 3.6E-48 7.7E-53 385.3 21.0 225 81-332 2-238 (258)
22 COG1118 CysA ABC-type sulfate/ 100.0 1.4E-47 3.1E-52 393.1 20.7 220 82-330 2-226 (345)
23 COG4555 NatA ABC-type Na+ tran 100.0 1.3E-47 2.8E-52 371.6 17.6 221 82-332 1-223 (245)
24 COG2884 FtsE Predicted ATPase 100.0 4.9E-47 1.1E-51 364.8 20.7 214 82-325 1-220 (223)
25 TIGR02314 ABC_MetN D-methionin 100.0 8.4E-46 1.8E-50 402.1 28.1 222 82-330 1-229 (343)
26 PRK13537 nodulation ABC transp 100.0 9.6E-46 2.1E-50 397.5 28.3 220 81-331 6-227 (306)
27 COG1117 PstB ABC-type phosphat 100.0 3.3E-46 7.1E-51 365.2 20.2 235 80-350 5-248 (253)
28 PRK11650 ugpC glycerol-3-phosp 100.0 1.7E-45 3.7E-50 402.5 28.2 219 82-330 3-223 (356)
29 TIGR03265 PhnT2 putative 2-ami 100.0 2.4E-45 5.3E-50 400.9 28.1 218 82-330 4-223 (353)
30 cd03261 ABC_Org_Solvent_Resist 100.0 2.8E-45 6.1E-50 379.7 26.6 217 83-329 1-224 (235)
31 PRK11432 fbpC ferric transport 100.0 3.9E-45 8.4E-50 398.7 28.2 218 82-330 6-225 (351)
32 KOG0058 Peptide exporter, ABC 100.0 3.4E-46 7.4E-51 420.2 19.1 226 80-331 463-691 (716)
33 COG1122 CbiO ABC-type cobalt t 100.0 2.5E-45 5.5E-50 376.9 23.9 219 82-331 3-228 (235)
34 TIGR03258 PhnT 2-aminoethylpho 100.0 5.8E-45 1.3E-49 398.6 28.1 218 82-330 5-227 (362)
35 COG3840 ThiQ ABC-type thiamine 100.0 1.5E-45 3.3E-50 351.8 19.7 216 82-330 1-218 (231)
36 PRK13536 nodulation factor exp 100.0 1.3E-44 2.9E-49 393.2 29.3 221 80-331 39-261 (340)
37 PRK09452 potA putrescine/sperm 100.0 1.3E-44 2.7E-49 397.4 28.7 220 80-330 12-233 (375)
38 PRK10851 sulfate/thiosulfate t 100.0 1.4E-44 3E-49 394.9 28.6 221 82-330 2-225 (353)
39 COG1124 DppF ABC-type dipeptid 100.0 7.6E-45 1.7E-49 364.2 22.8 222 82-331 3-231 (252)
40 TIGR00960 3a0501s02 Type II (G 100.0 1.4E-44 3.1E-49 369.6 25.2 210 82-320 1-216 (216)
41 TIGR01288 nodI ATP-binding ABC 100.0 2.9E-44 6.3E-49 385.9 28.0 220 81-331 3-224 (303)
42 cd03265 ABC_DrrA DrrA is the A 100.0 2.5E-44 5.3E-49 369.0 26.1 216 83-329 1-219 (220)
43 cd03259 ABC_Carb_Solutes_like 100.0 2.1E-44 4.5E-49 367.6 25.4 211 83-324 1-213 (213)
44 PRK11607 potG putrescine trans 100.0 4.4E-44 9.6E-49 393.7 29.8 220 80-330 17-238 (377)
45 PRK11153 metN DL-methionine tr 100.0 3.5E-44 7.6E-49 391.1 28.3 222 82-330 1-229 (343)
46 PRK11000 maltose/maltodextrin 100.0 4.3E-44 9.3E-49 393.8 28.3 218 82-330 3-222 (369)
47 cd03219 ABC_Mj1267_LivG_branch 100.0 3.6E-44 7.8E-49 371.5 26.1 219 83-329 1-230 (236)
48 cd03296 ABC_CysA_sulfate_impor 100.0 5.9E-44 1.3E-48 370.8 27.4 220 82-329 2-224 (239)
49 COG2274 SunT ABC-type bacterio 100.0 5.6E-45 1.2E-49 424.9 21.8 229 77-332 466-697 (709)
50 cd03218 ABC_YhbG The ABC trans 100.0 4.5E-44 9.8E-49 369.7 26.1 216 83-329 1-220 (232)
51 PRK13643 cbiO cobalt transport 100.0 9.3E-44 2E-48 379.3 28.4 234 82-342 1-247 (288)
52 cd03258 ABC_MetN_methionine_tr 100.0 6.5E-44 1.4E-48 368.9 25.7 221 82-329 1-228 (233)
53 cd03266 ABC_NatA_sodium_export 100.0 7.1E-44 1.5E-48 364.9 25.6 216 82-324 1-218 (218)
54 cd03269 ABC_putative_ATPase Th 100.0 6.8E-44 1.5E-48 363.0 25.1 210 83-324 1-210 (210)
55 cd03301 ABC_MalK_N The N-termi 100.0 9.5E-44 2.1E-48 362.6 26.2 211 83-324 1-213 (213)
56 cd03293 ABC_NrtD_SsuB_transpor 100.0 1E-43 2.2E-48 364.4 26.4 215 83-326 1-218 (220)
57 COG0411 LivG ABC-type branched 100.0 1.6E-44 3.5E-49 362.2 19.3 223 81-331 3-239 (250)
58 cd03256 ABC_PhnC_transporter A 100.0 7E-44 1.5E-48 370.3 24.8 220 83-329 1-232 (241)
59 cd03263 ABC_subfamily_A The AB 100.0 9.1E-44 2E-48 364.5 25.2 217 83-329 1-219 (220)
60 COG1137 YhbG ABC-type (unclass 100.0 2.6E-45 5.6E-50 355.3 12.7 221 82-331 4-228 (243)
61 TIGR03522 GldA_ABC_ATP gliding 100.0 1.3E-43 2.9E-48 380.4 27.4 218 82-331 2-221 (301)
62 cd03260 ABC_PstB_phosphate_tra 100.0 8.1E-44 1.7E-48 366.8 24.6 216 83-328 1-226 (227)
63 TIGR01188 drrA daunorubicin re 100.0 8E-44 1.7E-48 382.4 25.2 207 115-332 6-214 (302)
64 PRK09493 glnQ glutamine ABC tr 100.0 2.1E-43 4.5E-48 366.9 27.1 219 82-330 1-224 (240)
65 PRK13637 cbiO cobalt transport 100.0 3.2E-43 7E-48 374.9 28.9 222 82-330 2-233 (287)
66 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.1E-43 2.4E-48 363.4 24.3 210 83-320 1-218 (218)
67 PRK09536 btuD corrinoid ABC tr 100.0 1.5E-43 3.2E-48 391.2 27.0 220 82-329 3-226 (402)
68 cd03224 ABC_TM1139_LivF_branch 100.0 1.4E-43 3E-48 363.6 24.7 214 83-329 1-219 (222)
69 PRK13631 cbiO cobalt transport 100.0 4.4E-43 9.5E-48 378.7 29.8 223 81-330 20-264 (320)
70 PRK11264 putative amino-acid A 100.0 2.5E-43 5.5E-48 368.3 26.9 218 82-329 3-231 (250)
71 TIGR01186 proV glycine betaine 100.0 1.7E-43 3.8E-48 386.2 26.7 206 114-330 5-218 (363)
72 PRK13647 cbiO cobalt transport 100.0 4.1E-43 9E-48 371.8 28.5 218 82-329 4-225 (274)
73 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.5E-43 5.5E-48 366.7 26.4 217 83-329 1-223 (242)
74 PRK11629 lolD lipoprotein tran 100.0 4.6E-43 9.9E-48 362.8 28.0 217 82-326 5-229 (233)
75 COG4988 CydD ABC-type transpor 100.0 3E-44 6.6E-49 397.9 20.2 219 78-331 316-543 (559)
76 PRK13634 cbiO cobalt transport 100.0 4.3E-43 9.4E-48 374.5 28.3 222 82-330 2-234 (290)
77 cd03268 ABC_BcrA_bacitracin_re 100.0 1.8E-43 3.9E-48 359.4 24.0 207 83-324 1-208 (208)
78 TIGR02315 ABC_phnC phosphonate 100.0 1.6E-43 3.4E-48 368.2 24.1 221 82-329 1-233 (243)
79 PRK11831 putative ABC transpor 100.0 4.1E-43 8.9E-48 370.9 27.5 218 82-329 7-231 (269)
80 cd03234 ABCG_White The White s 100.0 4.2E-43 9.1E-48 361.4 26.3 222 82-324 3-226 (226)
81 TIGR02673 FtsE cell division A 100.0 3.5E-43 7.6E-48 358.7 25.2 208 82-319 1-214 (214)
82 PRK13650 cbiO cobalt transport 100.0 6.4E-43 1.4E-47 371.3 27.8 220 82-330 4-228 (279)
83 PRK13651 cobalt transporter AT 100.0 5.4E-43 1.2E-47 375.8 27.1 222 82-330 2-253 (305)
84 PRK10895 lipopolysaccharide AB 100.0 4.7E-43 1E-47 364.5 25.8 218 82-329 3-224 (241)
85 cd03292 ABC_FtsE_transporter F 100.0 4.7E-43 1E-47 357.6 24.9 208 83-320 1-214 (214)
86 cd03226 ABC_cobalt_CbiO_domain 100.0 2.3E-43 4.9E-48 358.0 22.2 203 85-321 2-205 (205)
87 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.2E-42 2.6E-47 360.4 27.6 218 82-331 1-221 (236)
88 PRK13646 cbiO cobalt transport 100.0 9.5E-43 2.1E-47 371.3 27.4 222 82-330 2-234 (286)
89 PRK11614 livF leucine/isoleuci 100.0 6.9E-43 1.5E-47 362.3 25.6 216 82-330 5-225 (237)
90 TIGR00972 3a0107s01c2 phosphat 100.0 1.2E-42 2.6E-47 362.8 27.2 218 82-329 1-230 (247)
91 PRK13636 cbiO cobalt transport 100.0 9.5E-43 2.1E-47 370.7 26.9 221 80-330 3-230 (283)
92 PRK14268 phosphate ABC transpo 100.0 1.5E-42 3.2E-47 364.5 27.9 223 80-329 10-240 (258)
93 PRK15079 oligopeptide ABC tran 100.0 1.4E-42 3.1E-47 376.1 28.6 235 80-330 6-250 (331)
94 PRK13641 cbiO cobalt transport 100.0 1.2E-42 2.5E-47 370.8 27.4 222 82-330 2-233 (287)
95 PRK11124 artP arginine transpo 100.0 1.2E-42 2.6E-47 361.6 26.7 217 82-329 2-228 (242)
96 PRK10619 histidine/lysine/argi 100.0 1.6E-42 3.4E-47 364.0 27.6 219 82-330 5-240 (257)
97 COG0410 LivF ABC-type branched 100.0 4.6E-43 1E-47 349.1 22.1 217 82-330 3-225 (237)
98 PRK11248 tauB taurine transpor 100.0 1.7E-42 3.6E-47 363.4 27.6 213 82-327 1-216 (255)
99 cd03264 ABC_drug_resistance_li 100.0 6.4E-43 1.4E-47 356.1 23.8 209 83-324 1-211 (211)
100 PRK10908 cell division protein 100.0 1.3E-42 2.9E-47 356.6 26.3 210 82-321 1-216 (222)
101 TIGR01257 rim_protein retinal- 100.0 2.8E-40 6E-45 415.2 52.5 226 79-334 925-1152(2272)
102 PRK14247 phosphate ABC transpo 100.0 1.8E-42 4E-47 361.9 27.6 225 82-330 3-233 (250)
103 PRK14267 phosphate ABC transpo 100.0 1.8E-42 4E-47 362.6 27.6 225 82-330 4-236 (253)
104 TIGR02211 LolD_lipo_ex lipopro 100.0 1.3E-42 2.8E-47 356.2 26.0 211 83-321 2-220 (221)
105 PRK14273 phosphate ABC transpo 100.0 1.8E-42 3.9E-47 362.9 27.5 220 81-330 6-237 (254)
106 PRK13638 cbiO cobalt transport 100.0 1.9E-42 4.2E-47 366.2 27.5 218 82-330 1-224 (271)
107 PRK11300 livG leucine/isoleuci 100.0 1.7E-42 3.8E-47 363.1 26.9 220 82-329 5-241 (255)
108 cd03257 ABC_NikE_OppD_transpor 100.0 1.5E-42 3.3E-47 357.2 25.8 217 82-324 1-228 (228)
109 PRK11022 dppD dipeptide transp 100.0 2.7E-42 5.8E-47 373.7 28.9 228 82-330 3-242 (326)
110 TIGR03411 urea_trans_UrtD urea 100.0 2.1E-42 4.5E-47 359.7 26.8 219 82-329 2-229 (242)
111 TIGR01978 sufC FeS assembly AT 100.0 1.8E-42 4E-47 360.1 26.4 223 83-330 1-233 (243)
112 cd03262 ABC_HisP_GlnQ_permease 100.0 1.1E-42 2.4E-47 354.6 24.1 208 83-320 1-213 (213)
113 PRK11174 cysteine/glutathione 100.0 3.6E-43 7.8E-48 410.3 23.1 222 81-331 348-572 (588)
114 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-42 2.3E-47 367.7 24.5 206 114-330 36-249 (269)
115 PRK13644 cbiO cobalt transport 100.0 2E-42 4.3E-47 366.6 26.5 217 82-329 1-222 (274)
116 PRK13635 cbiO cobalt transport 100.0 2.3E-42 4.9E-47 367.0 26.9 219 82-330 5-228 (279)
117 PRK14242 phosphate transporter 100.0 3E-42 6.5E-47 361.0 27.5 224 80-329 4-235 (253)
118 TIGR03005 ectoine_ehuA ectoine 100.0 2.5E-42 5.4E-47 361.4 26.6 217 83-329 1-234 (252)
119 PRK13548 hmuV hemin importer A 100.0 2.7E-42 5.8E-47 362.5 26.8 218 82-330 2-229 (258)
120 KOG0057 Mitochondrial Fe/S clu 100.0 2.9E-43 6.3E-48 384.3 19.9 222 81-331 350-574 (591)
121 PRK10070 glycine betaine trans 100.0 2.8E-42 6.1E-47 380.8 28.0 237 82-330 4-253 (400)
122 PRK09473 oppD oligopeptide tra 100.0 5.2E-42 1.1E-46 371.8 29.5 229 81-330 11-250 (330)
123 PRK09984 phosphonate/organopho 100.0 2.5E-42 5.3E-47 363.6 26.1 222 82-329 4-240 (262)
124 PRK14245 phosphate ABC transpo 100.0 4.3E-42 9.2E-47 359.2 27.7 224 81-330 2-233 (250)
125 PRK13648 cbiO cobalt transport 100.0 5.7E-42 1.2E-46 362.2 28.8 220 80-329 5-229 (269)
126 PRK13632 cbiO cobalt transport 100.0 3.4E-42 7.3E-47 364.3 26.7 221 80-330 5-230 (271)
127 cd03225 ABC_cobalt_CbiO_domain 100.0 1.5E-42 3.3E-47 353.2 23.1 207 84-319 1-211 (211)
128 PRK13649 cbiO cobalt transport 100.0 5.7E-42 1.2E-46 364.3 28.4 221 82-329 2-232 (280)
129 PRK11247 ssuB aliphatic sulfon 100.0 3.3E-42 7.2E-47 361.2 26.3 208 81-327 11-219 (257)
130 PRK13652 cbiO cobalt transport 100.0 4.5E-42 9.8E-47 364.4 27.5 219 82-330 3-226 (277)
131 KOG0055 Multidrug/pheromone ex 100.0 3.1E-43 6.7E-48 416.2 20.5 226 80-331 348-576 (1228)
132 PRK11231 fecE iron-dicitrate t 100.0 3.1E-42 6.7E-47 361.4 25.7 220 82-329 2-225 (255)
133 PRK10575 iron-hydroxamate tran 100.0 3.5E-42 7.6E-47 363.0 26.2 221 81-329 10-235 (265)
134 PRK13639 cbiO cobalt transport 100.0 6.9E-42 1.5E-46 362.7 28.4 218 82-330 1-225 (275)
135 PRK11308 dppF dipeptide transp 100.0 7.2E-42 1.6E-46 370.3 28.8 230 81-330 4-243 (327)
136 PRK15093 antimicrobial peptide 100.0 6.8E-42 1.5E-46 371.5 28.6 230 82-330 3-247 (330)
137 PRK14269 phosphate ABC transpo 100.0 5.6E-42 1.2E-46 357.5 26.8 224 82-330 2-229 (246)
138 COG1132 MdlB ABC-type multidru 100.0 6.7E-43 1.5E-47 406.3 22.1 223 81-331 327-552 (567)
139 cd03235 ABC_Metallic_Cations A 100.0 1.6E-42 3.4E-47 353.7 21.9 209 85-324 2-213 (213)
140 PRK10584 putative ABC transpor 100.0 7.2E-42 1.6E-46 352.5 27.0 214 81-322 5-226 (228)
141 PRK10744 pstB phosphate transp 100.0 8.8E-42 1.9E-46 359.0 27.6 225 80-330 11-243 (260)
142 TIGR02769 nickel_nikE nickel i 100.0 7.4E-42 1.6E-46 360.5 27.1 228 82-330 2-239 (265)
143 PRK13640 cbiO cobalt transport 100.0 6.1E-42 1.3E-46 364.3 26.7 222 81-330 4-231 (282)
144 COG4152 ABC-type uncharacteriz 100.0 8.2E-43 1.8E-47 347.0 18.5 222 82-335 2-223 (300)
145 PRK10253 iron-enterobactin tra 100.0 6.5E-42 1.4E-46 361.0 26.1 222 81-330 6-232 (265)
146 PRK14241 phosphate transporter 100.0 1.1E-41 2.3E-46 358.0 27.5 224 82-330 4-241 (258)
147 COG4987 CydC ABC-type transpor 100.0 3.1E-43 6.8E-48 383.8 16.4 216 82-331 336-561 (573)
148 PRK14235 phosphate transporter 100.0 1.1E-41 2.4E-46 359.6 27.8 223 82-329 19-249 (267)
149 cd03298 ABC_ThiQ_thiamine_tran 100.0 5.9E-42 1.3E-46 349.0 24.8 209 83-324 1-211 (211)
150 TIGR03410 urea_trans_UrtE urea 100.0 5.2E-42 1.1E-46 354.0 24.6 213 83-329 1-219 (230)
151 TIGR03415 ABC_choXWV_ATP choli 100.0 5E-42 1.1E-46 376.4 25.7 237 83-330 1-253 (382)
152 TIGR03740 galliderm_ABC gallid 100.0 5.7E-42 1.2E-46 352.2 24.5 209 83-327 1-209 (223)
153 PRK13633 cobalt transporter AT 100.0 1.1E-41 2.3E-46 362.1 27.4 222 82-330 4-232 (280)
154 PRK14237 phosphate transporter 100.0 1.6E-41 3.4E-46 358.4 28.4 227 78-330 16-250 (267)
155 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.5E-42 3.2E-47 411.8 23.0 214 81-331 450-673 (686)
156 TIGR03873 F420-0_ABC_ATP propo 100.0 6.9E-42 1.5E-46 359.0 25.4 219 83-329 2-224 (256)
157 PRK14256 phosphate ABC transpo 100.0 1.5E-41 3.3E-46 355.5 27.8 223 82-329 4-234 (252)
158 PRK13549 xylose transporter AT 100.0 5.9E-42 1.3E-46 393.0 26.7 222 82-329 5-230 (506)
159 PRK14274 phosphate ABC transpo 100.0 1.8E-41 3.9E-46 356.4 27.6 223 82-330 12-242 (259)
160 TIGR00968 3a0106s01 sulfate AB 100.0 1.5E-41 3.2E-46 352.5 26.5 217 83-330 1-219 (237)
161 PRK14239 phosphate transporter 100.0 2E-41 4.4E-46 354.4 27.7 223 82-330 5-235 (252)
162 PRK10771 thiQ thiamine transpo 100.0 1.5E-41 3.3E-46 351.2 26.1 216 82-330 1-218 (232)
163 PRK11144 modC molybdate transp 100.0 1.2E-41 2.5E-46 372.6 26.5 209 82-330 1-217 (352)
164 PRK13645 cbiO cobalt transport 100.0 1.6E-41 3.4E-46 362.5 26.8 221 82-329 6-238 (289)
165 cd03300 ABC_PotA_N PotA is an 100.0 2.1E-41 4.5E-46 350.2 26.9 217 83-330 1-219 (232)
166 PRK14250 phosphate ABC transpo 100.0 1.1E-41 2.3E-46 354.4 24.8 212 82-329 3-219 (241)
167 COG4559 ABC-type hemin transpo 100.0 3.6E-42 7.8E-47 336.2 19.5 218 82-330 1-229 (259)
168 cd03233 ABC_PDR_domain1 The pl 100.0 1.6E-41 3.5E-46 343.8 25.1 196 82-324 3-202 (202)
169 PRK15112 antimicrobial peptide 100.0 2.4E-41 5.2E-46 357.1 27.4 228 82-330 4-238 (267)
170 COG4525 TauB ABC-type taurine 100.0 1.1E-41 2.3E-46 328.5 22.2 215 82-327 3-220 (259)
171 COG4181 Predicted ABC-type tra 100.0 2.4E-42 5.2E-47 326.6 17.4 213 82-322 6-226 (228)
172 PRK14262 phosphate ABC transpo 100.0 2.8E-41 6.1E-46 353.0 27.4 223 82-330 3-233 (250)
173 TIGR02142 modC_ABC molybdenum 100.0 1.7E-41 3.7E-46 371.7 26.6 198 120-330 15-220 (354)
174 PRK14240 phosphate transporter 100.0 3.6E-41 7.8E-46 352.2 27.6 222 82-329 3-232 (250)
175 PRK14270 phosphate ABC transpo 100.0 3.2E-41 6.8E-46 352.9 27.2 224 81-330 3-234 (251)
176 PRK11176 lipid transporter ATP 100.0 4.6E-42 9.9E-47 400.6 23.0 218 81-331 340-567 (582)
177 cd03299 ABC_ModC_like Archeal 100.0 3.5E-41 7.6E-46 349.2 27.1 216 83-330 1-218 (235)
178 PRK13642 cbiO cobalt transport 100.0 3.1E-41 6.8E-46 358.0 27.0 220 82-330 4-228 (277)
179 PRK14244 phosphate ABC transpo 100.0 3.1E-41 6.8E-46 352.9 26.5 222 83-329 6-235 (251)
180 PRK14253 phosphate ABC transpo 100.0 3.3E-41 7.1E-46 352.3 26.6 222 82-329 3-231 (249)
181 COG4175 ProV ABC-type proline/ 100.0 2.4E-42 5.2E-47 354.8 17.4 240 81-331 3-254 (386)
182 TIGR01277 thiQ thiamine ABC tr 100.0 3.4E-41 7.3E-46 344.1 25.9 210 83-325 1-212 (213)
183 PRK14259 phosphate ABC transpo 100.0 3.1E-41 6.6E-46 356.6 26.4 223 80-330 11-252 (269)
184 PRK14272 phosphate ABC transpo 100.0 4.8E-41 1E-45 351.6 27.5 225 81-330 3-235 (252)
185 TIGR03375 type_I_sec_LssB type 100.0 6.6E-42 1.4E-46 406.8 23.7 220 81-332 462-689 (694)
186 PRK13547 hmuV hemin importer A 100.0 2.2E-41 4.8E-46 357.9 25.1 222 82-329 1-242 (272)
187 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.8E-42 8.2E-47 410.0 21.4 215 81-331 476-700 (710)
188 PRK14236 phosphate transporter 100.0 7.4E-41 1.6E-45 354.3 28.4 223 81-329 24-254 (272)
189 PRK14261 phosphate ABC transpo 100.0 6.4E-41 1.4E-45 351.0 27.6 223 82-330 6-236 (253)
190 PRK10762 D-ribose transporter 100.0 2.4E-41 5.1E-46 387.6 26.6 220 82-329 4-228 (501)
191 cd03267 ABC_NatA_like Similar 100.0 2.5E-41 5.4E-46 350.6 24.1 229 84-324 2-236 (236)
192 PRK14271 phosphate ABC transpo 100.0 9.4E-41 2E-45 354.1 28.6 223 82-330 21-250 (276)
193 PRK14257 phosphate ABC transpo 100.0 8.4E-41 1.8E-45 362.0 28.6 226 80-330 78-312 (329)
194 KOG0055 Multidrug/pheromone ex 100.0 4E-42 8.7E-47 406.7 19.8 227 79-331 984-1213(1228)
195 COG0444 DppD ABC-type dipeptid 100.0 3.1E-41 6.8E-46 352.2 24.0 227 83-330 2-242 (316)
196 PRK11160 cysteine/glutathione 100.0 8.3E-42 1.8E-46 397.2 22.0 217 81-331 337-562 (574)
197 PRK14248 phosphate ABC transpo 100.0 8.7E-41 1.9E-45 353.0 27.6 224 81-330 20-251 (268)
198 PRK11701 phnK phosphonate C-P 100.0 7.9E-41 1.7E-45 351.3 27.1 218 82-329 6-239 (258)
199 PRK14249 phosphate ABC transpo 100.0 1E-40 2.2E-45 349.1 27.7 222 82-329 4-233 (251)
200 cd03297 ABC_ModC_molybdenum_tr 100.0 4.7E-41 1E-45 343.2 24.6 191 120-324 16-214 (214)
201 PRK09700 D-allose transporter 100.0 3.3E-41 7.2E-46 387.2 26.4 220 82-329 5-232 (510)
202 TIGR00958 3a01208 Conjugate Tr 100.0 8.8E-42 1.9E-46 405.9 22.1 216 81-331 477-702 (711)
203 PRK14258 phosphate ABC transpo 100.0 1.1E-40 2.5E-45 350.8 27.9 224 82-330 7-244 (261)
204 cd03252 ABCC_Hemolysin The ABC 100.0 1.6E-41 3.6E-46 351.9 21.0 215 83-331 1-225 (237)
205 PRK10418 nikD nickel transport 100.0 8.1E-41 1.8E-45 350.5 26.4 222 80-330 2-229 (254)
206 PRK10790 putative multidrug tr 100.0 1.6E-41 3.4E-46 396.8 23.1 215 81-331 339-563 (592)
207 TIGR01184 ntrCD nitrate transp 100.0 4.8E-41 1E-45 347.1 23.8 201 118-329 1-202 (230)
208 PRK14238 phosphate transporter 100.0 1.5E-40 3.1E-45 351.8 27.8 224 80-329 22-253 (271)
209 PRK14260 phosphate ABC transpo 100.0 1.2E-40 2.5E-45 350.3 26.8 223 82-330 7-242 (259)
210 PRK14251 phosphate ABC transpo 100.0 1.5E-40 3.2E-45 347.8 27.0 222 82-329 4-233 (251)
211 PRK14255 phosphate ABC transpo 100.0 2.1E-40 4.6E-45 346.8 28.1 223 81-329 4-234 (252)
212 cd03232 ABC_PDR_domain2 The pl 100.0 9.6E-41 2.1E-45 335.5 24.4 189 82-324 3-192 (192)
213 PRK15439 autoinducer 2 ABC tra 100.0 1.1E-40 2.4E-45 382.7 28.1 213 82-329 11-227 (510)
214 TIGR01193 bacteriocin_ABC ABC- 100.0 1.3E-41 2.8E-46 405.2 21.2 217 82-331 473-697 (708)
215 PRK14265 phosphate ABC transpo 100.0 2.3E-40 5E-45 350.8 27.9 223 80-330 18-257 (274)
216 COG4598 HisP ABC-type histidin 100.0 6.2E-42 1.3E-46 325.9 14.2 218 82-329 6-239 (256)
217 TIGR03608 L_ocin_972_ABC putat 100.0 7.2E-41 1.6E-45 339.5 23.1 189 115-315 11-206 (206)
218 TIGR02982 heterocyst_DevA ABC 100.0 1.5E-40 3.2E-45 341.1 25.4 211 83-320 2-219 (220)
219 PRK14254 phosphate ABC transpo 100.0 3.9E-40 8.6E-45 350.8 29.6 222 80-329 37-267 (285)
220 PRK14275 phosphate ABC transpo 100.0 1.9E-40 4.2E-45 353.4 27.2 224 81-330 38-269 (286)
221 TIGR02633 xylG D-xylose ABC tr 100.0 1.2E-40 2.6E-45 381.8 27.2 222 82-329 1-228 (500)
222 cd03213 ABCG_EPDR ABCG transpo 100.0 1.7E-40 3.7E-45 334.2 24.8 190 82-324 3-194 (194)
223 CHL00131 ycf16 sulfate ABC tra 100.0 4.5E-40 9.7E-45 344.2 28.5 223 82-329 7-239 (252)
224 cd03251 ABCC_MsbA MsbA is an e 100.0 5.1E-41 1.1E-45 347.4 20.9 215 83-331 1-225 (234)
225 PRK14263 phosphate ABC transpo 100.0 4.2E-40 9.1E-45 346.4 27.7 223 80-330 6-244 (261)
226 PRK15056 manganese/iron transp 100.0 2.2E-40 4.7E-45 350.7 25.6 220 82-329 6-228 (272)
227 TIGR02770 nickel_nikD nickel i 100.0 2E-40 4.2E-45 342.5 24.3 205 117-330 1-214 (230)
228 PRK14243 phosphate transporter 100.0 2.8E-40 6.2E-45 348.3 25.8 221 82-330 10-247 (264)
229 PRK14266 phosphate ABC transpo 100.0 4.5E-40 9.7E-45 343.9 26.9 223 82-330 3-233 (250)
230 TIGR02323 CP_lyasePhnK phospho 100.0 3.2E-40 6.9E-45 345.7 25.8 219 82-330 3-237 (253)
231 PRK10419 nikE nickel transport 100.0 4.1E-40 8.8E-45 347.9 26.7 228 82-330 3-240 (268)
232 TIGR01842 type_I_sec_PrtD type 100.0 8E-41 1.7E-45 387.0 23.2 218 82-330 316-541 (544)
233 PTZ00265 multidrug resistance 100.0 2.6E-41 5.6E-46 424.2 20.5 227 82-331 1165-1452(1466)
234 PRK13543 cytochrome c biogenes 100.0 2.8E-40 6E-45 337.7 24.2 204 80-317 9-212 (214)
235 PRK13657 cyclic beta-1,2-gluca 100.0 8.7E-41 1.9E-45 390.2 23.2 215 82-331 334-558 (588)
236 PRK11288 araG L-arabinose tran 100.0 3.4E-40 7.4E-45 378.0 27.6 216 82-325 4-223 (501)
237 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 9.1E-41 2E-45 346.5 20.7 217 83-332 1-227 (238)
238 KOG0056 Heavy metal exporter H 100.0 1.2E-41 2.6E-46 363.7 13.7 224 80-331 535-761 (790)
239 PRK09580 sufC cysteine desulfu 100.0 6.7E-40 1.4E-44 342.0 26.2 224 82-330 1-234 (248)
240 cd03254 ABCC_Glucan_exporter_l 100.0 1.4E-40 3E-45 343.1 20.6 214 82-330 2-225 (229)
241 PRK10247 putative ABC transpor 100.0 3E-40 6.6E-45 340.0 23.1 211 81-326 6-222 (225)
242 cd03245 ABCC_bacteriocin_expor 100.0 2.4E-40 5.1E-45 339.3 22.2 210 82-324 2-220 (220)
243 TIGR01846 type_I_sec_HlyB type 100.0 1.4E-40 3E-45 395.4 23.5 219 81-331 454-680 (694)
244 TIGR02203 MsbA_lipidA lipid A 100.0 9.2E-41 2E-45 388.8 21.2 216 82-330 330-555 (571)
245 TIGR01257 rim_protein retinal- 100.0 3.6E-40 7.7E-45 414.2 28.0 225 81-334 1936-2162(2272)
246 PRK14264 phosphate ABC transpo 100.0 1.4E-39 3E-44 349.9 28.6 227 80-330 43-288 (305)
247 PRK13538 cytochrome c biogenes 100.0 5.1E-40 1.1E-44 333.2 23.9 200 82-315 1-202 (204)
248 PRK10982 galactose/methyl gala 100.0 3.4E-40 7.4E-45 377.2 25.2 207 115-329 11-221 (491)
249 COG1123 ATPase components of v 100.0 5.7E-40 1.2E-44 365.4 26.0 229 82-332 5-245 (539)
250 PRK14246 phosphate ABC transpo 100.0 8.6E-40 1.9E-44 343.3 25.9 222 82-330 10-240 (257)
251 PRK14252 phosphate ABC transpo 100.0 1.5E-39 3.2E-44 343.1 27.8 223 80-329 14-247 (265)
252 COG1123 ATPase components of v 100.0 4.8E-40 1E-44 366.0 25.1 233 80-330 278-518 (539)
253 PRK10261 glutathione transport 100.0 1.2E-39 2.5E-44 382.0 28.4 231 81-330 312-552 (623)
254 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.1E-40 1.3E-44 346.8 23.5 215 82-331 2-225 (275)
255 COG4618 ArpD ABC-type protease 100.0 1.5E-40 3.2E-45 359.7 19.0 229 80-334 332-563 (580)
256 cd03230 ABC_DR_subfamily_A Thi 100.0 7E-40 1.5E-44 323.8 22.2 171 83-320 1-173 (173)
257 PRK15134 microcin C ABC transp 100.0 1.2E-39 2.5E-44 376.0 27.6 225 82-330 5-245 (529)
258 cd03231 ABC_CcmA_heme_exporter 100.0 8.1E-40 1.8E-44 331.1 22.9 196 83-315 1-198 (201)
259 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-39 2.6E-44 375.3 26.7 221 83-332 1-259 (520)
260 PRK10261 glutathione transport 100.0 1.3E-39 2.8E-44 381.6 27.4 222 82-329 12-256 (623)
261 PRK13546 teichoic acids export 100.0 2.9E-39 6.3E-44 340.2 27.1 230 81-331 3-232 (264)
262 cd03253 ABCC_ATM1_transporter 100.0 5.6E-40 1.2E-44 340.1 21.0 215 83-330 1-223 (236)
263 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.1E-39 4.6E-44 333.5 24.7 191 114-324 34-224 (224)
264 PRK15134 microcin C ABC transp 100.0 1.6E-39 3.5E-44 374.8 26.0 231 81-330 274-514 (529)
265 COG1129 MglA ABC-type sugar tr 100.0 1.6E-39 3.5E-44 359.7 24.8 218 80-325 6-228 (500)
266 PRK10789 putative multidrug tr 100.0 5.4E-40 1.2E-44 381.8 22.1 216 82-331 313-538 (569)
267 COG4604 CeuD ABC-type enteroch 100.0 6.5E-41 1.4E-45 323.7 11.6 220 82-330 1-224 (252)
268 TIGR03269 met_CoM_red_A2 methy 100.0 2.2E-39 4.8E-44 373.0 26.5 224 81-331 278-517 (520)
269 TIGR02204 MsbA_rel ABC transpo 100.0 5.3E-40 1.1E-44 382.8 21.6 217 81-330 336-562 (576)
270 PRK13539 cytochrome c biogenes 100.0 1.9E-39 4.2E-44 329.8 22.7 199 82-317 2-200 (207)
271 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.4E-39 5.3E-44 327.4 23.2 190 83-333 1-195 (200)
272 PRK03695 vitamin B12-transport 100.0 2.2E-39 4.7E-44 338.6 23.5 200 117-329 11-220 (248)
273 TIGR01192 chvA glucan exporter 100.0 9.5E-40 2.1E-44 380.7 23.1 217 82-331 334-558 (585)
274 PRK13549 xylose transporter AT 100.0 1.6E-39 3.4E-44 373.0 24.1 225 81-329 258-492 (506)
275 PRK09544 znuC high-affinity zi 100.0 4.2E-39 9.1E-44 336.8 24.9 201 82-329 4-207 (251)
276 cd03248 ABCC_TAP TAP, the Tran 100.0 9.6E-40 2.1E-44 336.3 19.2 212 81-320 10-226 (226)
277 TIGR02868 CydC thiol reductant 100.0 6.1E-40 1.3E-44 378.6 19.6 188 81-301 333-529 (529)
278 cd03229 ABC_Class3 This class 100.0 2.4E-39 5.2E-44 321.4 21.0 172 83-319 1-178 (178)
279 cd03244 ABCC_MRP_domain2 Domai 100.0 3E-39 6.5E-44 331.3 22.4 209 82-325 2-220 (221)
280 TIGR02324 CP_lyasePhnL phospho 100.0 5.3E-39 1.2E-43 330.3 24.2 211 82-316 1-223 (224)
281 TIGR01189 ccmA heme ABC export 100.0 4E-39 8.6E-44 325.2 22.8 195 83-314 1-197 (198)
282 PRK09700 D-allose transporter 100.0 2.8E-39 6E-44 371.3 24.0 216 81-326 264-493 (510)
283 cd03215 ABC_Carb_Monos_II This 100.0 4.9E-39 1.1E-43 320.3 22.3 172 82-320 4-182 (182)
284 PRK13540 cytochrome c biogenes 100.0 4.2E-39 9.2E-44 325.5 22.0 195 82-313 1-197 (200)
285 COG4161 ArtP ABC-type arginine 100.0 2.6E-39 5.7E-44 302.9 17.6 217 82-328 2-227 (242)
286 cd03246 ABCC_Protease_Secretio 100.0 4.8E-39 1.1E-43 317.8 20.6 170 83-320 1-173 (173)
287 PRK10938 putative molybdenum t 100.0 3.4E-39 7.4E-44 368.9 22.4 209 82-329 3-222 (490)
288 TIGR02633 xylG D-xylose ABC tr 100.0 4.4E-39 9.5E-44 368.9 23.3 224 81-328 256-489 (500)
289 cd03247 ABCC_cytochrome_bd The 100.0 5.5E-39 1.2E-43 318.8 20.6 176 83-324 1-178 (178)
290 cd03288 ABCC_SUR2 The SUR doma 100.0 8.6E-39 1.9E-43 335.7 23.0 216 81-331 18-243 (257)
291 PRK13545 tagH teichoic acids e 100.0 2.9E-38 6.3E-43 353.1 28.0 214 82-333 21-234 (549)
292 PLN03130 ABC transporter C fam 100.0 3.2E-39 6.8E-44 408.9 22.6 218 81-331 1236-1461(1622)
293 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.9E-38 4.2E-43 322.3 23.8 199 82-326 6-207 (207)
294 PLN03232 ABC transporter C fam 100.0 3.2E-39 6.9E-44 408.4 22.3 216 81-331 1233-1458(1495)
295 TIGR01166 cbiO cobalt transpor 100.0 1.1E-38 2.4E-43 319.7 21.5 177 115-302 5-188 (190)
296 COG4148 ModC ABC-type molybdat 100.0 1.6E-39 3.5E-44 328.8 15.0 195 119-330 15-217 (352)
297 TIGR02857 CydD thiol reductant 100.0 3E-39 6.6E-44 372.7 19.4 200 82-315 320-529 (529)
298 COG4172 ABC-type uncharacteriz 100.0 3.7E-38 8.1E-43 332.1 24.9 236 77-330 271-515 (534)
299 COG0396 sufC Cysteine desulfur 100.0 5.1E-38 1.1E-42 311.7 24.2 234 81-340 2-242 (251)
300 PRK10535 macrolide transporter 100.0 2.2E-37 4.8E-42 364.0 33.4 220 82-329 4-230 (648)
301 COG3845 ABC-type uncharacteriz 100.0 2.2E-38 4.8E-43 343.7 22.9 217 81-325 3-223 (501)
302 PRK10762 D-ribose transporter 100.0 2.9E-38 6.4E-43 362.0 24.3 205 117-329 267-482 (501)
303 TIGR03771 anch_rpt_ABC anchore 100.0 3.7E-38 8E-43 324.1 22.1 196 123-329 1-199 (223)
304 PRK11288 araG L-arabinose tran 100.0 2.6E-38 5.6E-43 362.5 22.4 206 116-329 267-483 (501)
305 cd03214 ABC_Iron-Siderophores_ 100.0 2.1E-38 4.5E-43 315.3 18.6 176 84-324 1-180 (180)
306 TIGR00957 MRP_assoc_pro multi 100.0 1.8E-38 3.8E-43 402.2 21.9 216 81-331 1283-1508(1522)
307 cd03250 ABCC_MRP_domain1 Domai 100.0 8E-38 1.7E-42 317.0 21.3 196 83-319 1-204 (204)
308 PRK15439 autoinducer 2 ABC tra 100.0 7.5E-38 1.6E-42 359.3 23.8 205 117-329 278-490 (510)
309 PTZ00243 ABC transporter; Prov 100.0 2.5E-38 5.5E-43 400.1 21.6 216 81-331 1307-1533(1560)
310 TIGR01187 potA spermidine/putr 100.0 8.9E-38 1.9E-42 338.6 22.7 187 133-330 1-189 (325)
311 PRK13541 cytochrome c biogenes 100.0 1.5E-37 3.2E-42 313.0 22.1 193 82-313 1-193 (195)
312 cd03290 ABCC_SUR1_N The SUR do 100.0 1.7E-37 3.7E-42 317.9 22.7 201 84-319 2-218 (218)
313 PRK10522 multidrug transporter 100.0 1.1E-37 2.3E-42 361.1 23.4 203 82-323 322-530 (547)
314 cd03216 ABC_Carb_Monos_I This 100.0 2.1E-37 4.5E-42 303.3 21.7 158 83-322 1-162 (163)
315 COG5265 ATM1 ABC-type transpor 100.0 1.8E-38 3.9E-43 336.8 14.4 226 79-332 259-487 (497)
316 cd03228 ABCC_MRP_Like The MRP 100.0 1.4E-37 3E-42 306.9 19.5 168 83-319 1-171 (171)
317 COG4619 ABC-type uncharacteriz 100.0 1.8E-38 3.9E-43 299.4 12.0 194 114-320 15-212 (223)
318 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.4E-36 3E-41 322.4 26.7 204 78-330 35-246 (282)
319 TIGR01271 CFTR_protein cystic 100.0 3.8E-37 8.3E-42 389.1 25.3 215 81-331 1216-1440(1490)
320 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.2E-37 9.2E-42 356.5 23.3 211 81-323 336-551 (555)
321 cd03223 ABCD_peroxisomal_ALDP 100.0 6.6E-37 1.4E-41 300.6 21.2 163 83-318 1-163 (166)
322 PRK15064 ABC transporter ATP-b 100.0 6.2E-37 1.3E-41 353.4 24.3 210 82-330 1-241 (530)
323 PTZ00265 multidrug resistance 100.0 1.7E-37 3.7E-42 389.8 21.0 214 82-318 382-655 (1466)
324 PRK10982 galactose/methyl gala 100.0 6.2E-37 1.3E-41 350.3 22.4 217 81-327 249-476 (491)
325 PRK11819 putative ABC transpor 100.0 1.7E-36 3.7E-41 351.3 25.0 210 81-329 5-248 (556)
326 COG4674 Uncharacterized ABC-ty 100.0 3.1E-37 6.8E-42 297.8 15.4 221 81-330 4-234 (249)
327 PRK10938 putative molybdenum t 100.0 8.3E-37 1.8E-41 349.3 21.8 217 80-324 258-485 (490)
328 PRK15177 Vi polysaccharide exp 100.0 1.2E-36 2.6E-41 310.7 20.5 195 117-336 2-197 (213)
329 COG1119 ModF ABC-type molybden 100.0 6.4E-37 1.4E-41 307.4 17.7 219 79-325 28-256 (257)
330 cd03237 ABC_RNaseL_inhibitor_d 100.0 4.4E-36 9.5E-41 313.0 23.6 189 117-329 9-205 (246)
331 PRK15064 ABC transporter ATP-b 100.0 3.4E-36 7.5E-41 347.2 24.4 203 81-330 318-524 (530)
332 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.3E-36 9.4E-41 347.8 24.3 212 81-331 3-248 (552)
333 COG4586 ABC-type uncharacteriz 100.0 9.8E-37 2.1E-41 308.2 15.0 241 82-334 3-249 (325)
334 COG4608 AppF ABC-type oligopep 100.0 7.8E-36 1.7E-40 305.7 20.6 195 81-330 3-198 (268)
335 COG1101 PhnK ABC-type uncharac 100.0 4.8E-36 1E-40 293.9 17.3 203 113-323 17-230 (263)
336 PRK11819 putative ABC transpor 100.0 2.6E-35 5.5E-40 341.5 24.9 205 80-328 322-530 (556)
337 COG4172 ABC-type uncharacteriz 100.0 2.5E-35 5.5E-40 310.8 21.5 227 82-329 6-245 (534)
338 PRK13409 putative ATPase RIL; 100.0 2.8E-35 6.1E-40 341.2 24.1 199 80-326 338-537 (590)
339 PLN03232 ABC transporter C fam 100.0 2.3E-35 5.1E-40 373.4 24.5 207 82-331 614-828 (1495)
340 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.5E-35 9.9E-40 339.3 24.6 203 81-327 321-527 (552)
341 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.7E-35 3.7E-40 309.9 18.5 191 115-324 14-220 (255)
342 PLN03130 ABC transporter C fam 100.0 3.1E-35 6.8E-40 372.6 22.4 206 82-331 614-828 (1622)
343 PRK10636 putative ABC transpor 100.0 1.5E-34 3.2E-39 339.3 25.2 204 80-331 310-517 (638)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.5E-34 5.5E-39 275.7 19.6 144 83-319 1-144 (144)
345 TIGR00954 3a01203 Peroxysomal 100.0 1.6E-34 3.5E-39 340.1 21.7 200 81-317 450-653 (659)
346 PRK11147 ABC transporter ATPas 100.0 3.8E-34 8.2E-39 336.3 24.0 206 80-329 317-526 (635)
347 cd03222 ABC_RNaseL_inhibitor T 100.0 4.9E-34 1.1E-38 282.3 19.4 144 115-327 13-159 (177)
348 PRK10636 putative ABC transpor 100.0 5.8E-34 1.3E-38 334.3 23.3 208 82-329 1-234 (638)
349 PLN03073 ABC transporter F fam 100.0 1.3E-33 2.8E-38 333.1 26.0 206 81-331 507-714 (718)
350 COG4136 ABC-type uncharacteriz 100.0 2.4E-34 5.3E-39 266.8 15.1 192 82-302 2-196 (213)
351 COG1134 TagH ABC-type polysacc 100.0 1.2E-33 2.7E-38 284.1 21.3 235 81-335 2-240 (249)
352 TIGR00957 MRP_assoc_pro multi 100.0 8.5E-34 1.8E-38 359.7 25.1 210 82-331 636-850 (1522)
353 KOG0059 Lipid exporter ABCA1 a 100.0 3.4E-34 7.4E-39 346.2 19.5 225 81-335 563-791 (885)
354 cd03238 ABC_UvrA The excision 100.0 1.4E-33 3E-38 278.8 19.7 159 114-322 7-168 (176)
355 PRK11147 ABC transporter ATPas 100.0 3.2E-33 6.9E-38 328.6 23.7 206 82-329 3-241 (635)
356 COG4167 SapF ABC-type antimicr 100.0 2.2E-33 4.7E-38 268.2 16.9 229 82-330 4-238 (267)
357 cd00267 ABC_ATPase ABC (ATP-bi 100.0 7.7E-33 1.7E-37 269.0 19.8 153 85-319 2-157 (157)
358 COG4133 CcmA ABC-type transpor 100.0 2.5E-33 5.3E-38 270.3 14.8 177 114-303 14-192 (209)
359 KOG0054 Multidrug resistance-a 100.0 1.2E-30 2.6E-35 316.3 40.8 209 80-331 516-731 (1381)
360 TIGR01271 CFTR_protein cystic 100.0 1.5E-32 3.2E-37 347.5 24.9 196 115-330 439-635 (1490)
361 COG4107 PhnK ABC-type phosphon 100.0 6E-33 1.3E-37 263.2 15.1 215 82-330 6-240 (258)
362 PRK13409 putative ATPase RIL; 100.0 6.5E-33 1.4E-37 321.5 17.5 181 115-318 87-287 (590)
363 KOG0054 Multidrug resistance-a 100.0 2.9E-32 6.2E-37 330.3 20.2 230 73-331 1130-1362(1381)
364 PTZ00243 ABC transporter; Prov 100.0 1.7E-31 3.6E-36 338.3 22.2 198 114-330 672-869 (1560)
365 COG0488 Uup ATPase components 100.0 2.8E-31 6.1E-36 301.1 20.1 207 82-328 3-237 (530)
366 PLN03073 ABC transporter F fam 100.0 1.2E-31 2.5E-36 316.5 17.1 221 79-329 174-429 (718)
367 cd03270 ABC_UvrA_I The excisio 100.0 4.2E-30 9.2E-35 264.8 20.8 191 114-324 7-226 (226)
368 PF00005 ABC_tran: ABC transpo 100.0 1.3E-30 2.8E-35 246.9 13.3 134 118-270 1-137 (137)
369 cd03271 ABC_UvrA_II The excisi 100.0 2.2E-29 4.7E-34 263.4 19.7 196 115-326 8-261 (261)
370 COG4778 PhnL ABC-type phosphon 100.0 1.6E-29 3.5E-34 239.3 14.1 215 80-317 2-227 (235)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 7E-29 1.5E-33 250.3 13.1 166 119-317 14-190 (197)
372 COG0488 Uup ATPase components 100.0 1.9E-27 4.1E-32 270.0 23.3 205 79-331 318-525 (530)
373 COG4138 BtuD ABC-type cobalami 100.0 2.9E-29 6.2E-34 238.5 6.9 196 118-330 15-220 (248)
374 COG1129 MglA ABC-type sugar tr 100.0 1.5E-27 3.2E-32 264.7 21.3 201 117-325 274-484 (500)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.4E-26 3.1E-31 240.9 14.2 184 115-316 15-234 (243)
376 COG4615 PvdE ABC-type sideroph 99.9 5.9E-27 1.3E-31 246.8 9.5 205 82-324 322-530 (546)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.9 9.2E-28 2E-32 244.9 2.0 178 114-317 16-204 (212)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.9E-26 4.1E-31 241.4 11.0 184 128-316 25-242 (251)
379 cd03240 ABC_Rad50 The catalyti 99.9 4.9E-26 1.1E-30 230.9 12.9 165 121-317 16-197 (204)
380 cd03279 ABC_sbcCD SbcCD and ot 99.9 5.6E-26 1.2E-30 232.1 12.8 180 119-319 18-210 (213)
381 PRK00635 excinuclease ABC subu 99.9 5.3E-25 1.1E-29 273.9 23.7 206 117-330 610-905 (1809)
382 COG3845 ABC-type uncharacteriz 99.9 8.2E-25 1.8E-29 238.3 21.4 225 79-329 254-490 (501)
383 COG4178 ABC-type uncharacteriz 99.9 2.5E-25 5.3E-30 251.5 17.2 198 80-317 390-588 (604)
384 PRK00349 uvrA excinuclease ABC 99.9 4.8E-24 1E-28 255.8 22.2 125 190-330 792-926 (943)
385 COG4170 SapD ABC-type antimicr 99.9 9E-24 2E-28 206.2 11.0 231 82-331 3-248 (330)
386 TIGR00630 uvra excinuclease AB 99.9 7.9E-23 1.7E-27 244.9 20.9 125 189-329 789-923 (924)
387 KOG0927 Predicted transporter 99.9 1.6E-23 3.6E-28 229.0 10.6 203 80-327 387-592 (614)
388 KOG0927 Predicted transporter 99.9 4.9E-23 1.1E-27 225.3 14.0 215 82-330 75-308 (614)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.2E-22 2.5E-27 205.2 14.7 169 117-319 11-192 (198)
390 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1E-22 2.2E-27 212.8 12.0 178 130-317 24-233 (247)
391 COG1245 Predicted ATPase, RNas 99.9 6.6E-22 1.4E-26 212.3 17.6 174 117-316 356-530 (591)
392 KOG0060 Long-chain acyl-CoA tr 99.9 7.9E-22 1.7E-26 217.3 17.9 204 81-317 432-641 (659)
393 PF01061 ABC2_membrane: ABC-2 99.9 2E-23 4.3E-28 210.0 1.7 208 429-639 1-210 (210)
394 KOG2355 Predicted ABC-type tra 99.8 1.5E-20 3.3E-25 183.4 15.3 212 81-331 12-237 (291)
395 KOG0062 ATPase component of AB 99.8 3.4E-21 7.3E-26 209.9 11.0 203 80-329 78-283 (582)
396 KOG0066 eIF2-interacting prote 99.8 1E-20 2.2E-25 201.1 13.2 192 79-317 583-776 (807)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.8 2.4E-20 5.1E-25 190.5 13.1 169 118-319 14-211 (213)
398 cd03280 ABC_MutS2 MutS2 homolo 99.8 2.8E-20 6.1E-25 188.2 12.5 147 117-324 16-172 (200)
399 KOG0062 ATPase component of AB 99.8 1.3E-19 2.8E-24 197.6 15.4 203 77-322 357-559 (582)
400 cd03283 ABC_MutS-like MutS-lik 99.8 1.2E-19 2.5E-24 183.5 9.9 136 115-303 14-150 (199)
401 cd03239 ABC_SMC_head The struc 99.8 9.2E-19 2E-23 173.9 15.9 74 242-317 95-172 (178)
402 COG1245 Predicted ATPase, RNas 99.8 1.5E-19 3.2E-24 194.3 9.9 171 125-317 97-288 (591)
403 COG2401 ABC-type ATPase fused 99.8 4.6E-19 9.9E-24 188.4 13.1 216 82-321 357-588 (593)
404 COG0178 UvrA Excinuclease ATPa 99.8 3E-18 6.5E-23 195.3 19.5 127 190-331 784-919 (935)
405 PRK00635 excinuclease ABC subu 99.8 1.9E-18 4.1E-23 216.0 18.9 201 116-331 1504-1796(1809)
406 cd03241 ABC_RecN RecN ATPase i 99.8 2.1E-18 4.5E-23 183.2 15.9 76 241-319 170-249 (276)
407 KOG0064 Peroxisomal long-chain 99.8 6.6E-19 1.4E-23 191.7 11.3 181 115-315 495-681 (728)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.8 5.3E-19 1.2E-23 181.6 8.5 153 114-325 16-175 (222)
409 cd03227 ABC_Class2 ABC-type Cl 99.8 2.2E-18 4.9E-23 168.5 10.3 74 242-317 78-155 (162)
410 PRK00349 uvrA excinuclease ABC 99.7 2.8E-17 6.1E-22 197.8 14.7 136 187-330 434-584 (943)
411 TIGR00630 uvra excinuclease AB 99.7 5.8E-17 1.3E-21 194.8 15.4 135 188-330 433-582 (924)
412 cd03242 ABC_RecF RecF is a rec 99.7 2.3E-16 4.9E-21 167.1 17.2 76 240-320 182-269 (270)
413 cd03243 ABC_MutS_homologs The 99.7 1.4E-17 3.1E-22 168.7 7.1 86 241-329 91-177 (202)
414 KOG0066 eIF2-interacting prote 99.7 9E-18 2E-22 178.9 3.3 202 114-326 276-494 (807)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.7 1.7E-16 3.6E-21 161.0 9.7 142 114-309 15-157 (204)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 3E-15 6.6E-20 153.3 11.4 157 115-330 18-180 (216)
417 TIGR02858 spore_III_AA stage I 99.6 5.3E-15 1.1E-19 155.8 11.7 140 129-329 112-267 (270)
418 KOG0063 RNAse L inhibitor, ABC 99.5 1E-13 2.2E-18 148.6 12.7 180 112-316 346-531 (592)
419 PRK00064 recF recombination pr 99.5 1.5E-12 3.3E-17 143.5 20.2 77 240-320 272-359 (361)
420 smart00534 MUTSac ATPase domai 99.5 4.6E-14 9.9E-19 141.2 5.4 80 240-322 60-141 (185)
421 PF02463 SMC_N: RecF/RecN/SMC 99.4 5.4E-14 1.2E-18 144.2 5.1 88 215-316 121-212 (220)
422 TIGR01247 drrB daunorubicin re 99.4 1.7E-11 3.6E-16 127.1 23.6 197 437-637 1-204 (236)
423 cd00820 PEPCK_HprK Phosphoenol 99.4 1.4E-13 3E-18 124.3 6.5 74 115-199 2-78 (107)
424 cd03281 ABC_MSH5_euk MutS5 hom 99.4 1.6E-12 3.6E-17 132.8 12.0 132 116-302 17-155 (213)
425 TIGR01069 mutS2 MutS2 family p 99.4 4.8E-13 1E-17 159.6 9.2 131 121-303 314-447 (771)
426 TIGR03062 pip_yhgE_Cterm YhgE/ 99.3 4.3E-11 9.3E-16 121.6 17.6 118 519-640 58-175 (208)
427 PTZ00132 GTP-binding nuclear p 99.3 1.9E-12 4.1E-17 132.3 7.4 45 245-289 156-205 (215)
428 cd03287 ABC_MSH3_euk MutS3 hom 99.3 1.1E-11 2.3E-16 127.4 12.8 139 115-309 18-160 (222)
429 TIGR00025 Mtu_efflux ABC trans 99.3 4.3E-10 9.3E-15 116.4 23.7 189 443-637 2-196 (232)
430 KOG0063 RNAse L inhibitor, ABC 99.3 6.3E-12 1.4E-16 135.0 9.0 170 126-316 98-287 (592)
431 cd01128 rho_factor Transcripti 99.3 4.2E-13 9E-18 139.9 0.0 174 123-320 11-211 (249)
432 TIGR01291 nodJ ABC-2 type tran 99.3 1.2E-09 2.6E-14 114.8 25.9 203 431-637 7-216 (253)
433 PRK07721 fliI flagellum-specif 99.3 4.7E-11 1E-15 133.7 15.4 172 114-328 145-340 (438)
434 TIGR00634 recN DNA repair prot 99.3 1E-11 2.2E-16 144.7 9.2 77 240-319 439-519 (563)
435 TIGR03861 phenyl_ABC_PedC alco 99.2 1.3E-09 2.8E-14 114.4 22.3 204 428-635 1-218 (253)
436 COG0178 UvrA Excinuclease ATPa 99.2 1.3E-10 2.9E-15 133.7 15.6 138 187-331 426-577 (935)
437 PRK10869 recombination and rep 99.2 2.5E-11 5.4E-16 140.5 10.0 76 241-319 430-509 (553)
438 PRK00409 recombination and DNA 99.2 1.3E-11 2.8E-16 147.8 7.5 81 240-323 389-470 (782)
439 PHA02562 46 endonuclease subun 99.2 1.9E-11 4.1E-16 142.7 8.7 78 239-320 466-555 (562)
440 TIGR00618 sbcc exonuclease Sbc 99.2 5.3E-11 1.2E-15 148.1 11.0 81 237-318 946-1036(1042)
441 PRK08533 flagellar accessory p 99.2 1.7E-10 3.6E-15 119.5 12.3 150 124-316 20-184 (230)
442 cd03286 ABC_MSH6_euk MutS6 hom 99.2 8.7E-11 1.9E-15 120.3 9.1 134 115-302 17-154 (218)
443 PF13304 AAA_21: AAA domain; P 99.2 9.6E-11 2.1E-15 119.8 9.4 63 240-302 235-300 (303)
444 PRK15066 inner membrane transp 99.1 3.4E-08 7.4E-13 103.9 26.8 205 427-635 6-216 (257)
445 PRK13695 putative NTPase; Prov 99.1 9.2E-11 2E-15 116.0 5.8 77 241-323 78-156 (174)
446 TIGR02788 VirB11 P-type DNA tr 99.1 4E-10 8.7E-15 121.7 10.9 141 121-330 137-280 (308)
447 cd01124 KaiC KaiC is a circadi 99.0 1.4E-09 3.1E-14 108.1 12.2 79 238-316 68-163 (187)
448 PRK03918 chromosome segregatio 99.0 5.9E-10 1.3E-14 136.9 9.7 78 238-317 785-868 (880)
449 cd01120 RecA-like_NTPases RecA 99.0 9.4E-10 2E-14 105.8 8.6 62 242-303 68-139 (165)
450 PRK13830 conjugal transfer pro 99.0 5.4E-09 1.2E-13 126.6 16.6 70 257-326 650-728 (818)
451 PRK10246 exonuclease subunit S 99.0 1.3E-09 2.8E-14 135.4 10.7 80 237-317 945-1032(1047)
452 TIGR00606 rad50 rad50. This fa 99.0 9.7E-10 2.1E-14 139.7 9.9 113 187-309 1154-1277(1311)
453 PRK06793 fliI flagellum-specif 99.0 3.2E-09 6.9E-14 118.3 11.6 155 115-325 144-305 (432)
454 COG3910 Predicted ATPase [Gene 98.9 1.4E-08 3.1E-13 99.0 13.2 76 240-318 128-204 (233)
455 PRK01156 chromosome segregatio 98.9 4.2E-09 9E-14 129.7 10.6 77 238-316 798-883 (895)
456 cd01131 PilT Pilus retraction 98.9 1.1E-08 2.3E-13 103.7 11.0 57 251-316 66-122 (198)
457 PRK06067 flagellar accessory p 98.8 3.6E-08 7.8E-13 102.3 12.5 161 117-316 13-186 (234)
458 TIGR02168 SMC_prok_B chromosom 98.8 6.1E-09 1.3E-13 131.4 7.6 76 238-316 1086-1165(1179)
459 TIGR03238 dnd_assoc_3 dnd syst 98.8 5.6E-09 1.2E-13 116.2 5.2 52 115-170 19-71 (504)
460 COG0842 ABC-type multidrug tra 98.7 1.3E-06 2.7E-11 91.6 21.8 134 505-640 116-250 (286)
461 PRK06995 flhF flagellar biosyn 98.7 3E-08 6.5E-13 112.1 9.7 151 116-299 244-400 (484)
462 smart00382 AAA ATPases associa 98.7 4.6E-07 9.9E-12 83.7 15.7 118 127-299 1-124 (148)
463 PRK02224 chromosome segregatio 98.7 2.6E-08 5.6E-13 122.6 9.2 78 239-318 779-869 (880)
464 cd01125 repA Hexameric Replica 98.7 9.9E-08 2.2E-12 99.3 11.7 136 128-302 1-160 (239)
465 TIGR02169 SMC_prok_A chromosom 98.7 2.4E-08 5.3E-13 126.1 8.1 76 239-317 1072-1151(1164)
466 TIGR01248 drrC daunorubicin re 98.6 6.8E-07 1.5E-11 86.7 14.0 131 502-635 14-146 (152)
467 cd01130 VirB11-like_ATPase Typ 98.6 1.3E-07 2.8E-12 94.7 8.1 85 117-203 14-100 (186)
468 PRK13891 conjugal transfer pro 98.6 6.1E-07 1.3E-11 109.4 15.0 69 252-321 680-751 (852)
469 PF06422 PDR_CDR: CDR ABC tran 98.6 6.1E-08 1.3E-12 87.5 4.5 59 667-731 15-74 (103)
470 TIGR02655 circ_KaiC circadian 98.5 5.8E-08 1.2E-12 111.4 3.0 166 117-316 9-190 (484)
471 TIGR00611 recf recF protein. A 98.5 2E-07 4.4E-12 103.0 7.1 59 241-302 275-342 (365)
472 TIGR01420 pilT_fam pilus retra 98.5 7E-07 1.5E-11 98.0 10.8 125 125-316 119-243 (343)
473 PRK14079 recF recombination pr 98.5 3.5E-07 7.6E-12 100.6 8.0 75 241-323 263-346 (349)
474 COG0419 SbcC ATPase involved i 98.4 5.4E-07 1.2E-11 111.1 10.3 78 238-317 812-897 (908)
475 PRK05399 DNA mismatch repair p 98.4 4.8E-07 1E-11 110.1 9.5 138 115-311 595-738 (854)
476 PRK07196 fliI flagellum-specif 98.4 2.8E-07 6.1E-12 103.0 6.8 88 114-202 142-239 (434)
477 TIGR01026 fliI_yscN ATPase Fli 98.4 1.2E-06 2.6E-11 98.6 10.8 176 114-329 150-346 (440)
478 cd02023 UMPK Uridine monophosp 98.4 2.9E-07 6.3E-12 92.9 5.3 113 130-274 1-113 (198)
479 TIGR03881 KaiC_arch_4 KaiC dom 98.4 8.9E-08 1.9E-12 98.8 1.6 47 117-166 8-57 (229)
480 PRK06002 fliI flagellum-specif 98.4 9.4E-07 2E-11 98.9 9.2 84 80-185 137-230 (450)
481 PRK13898 type IV secretion sys 98.3 1.1E-05 2.4E-10 98.3 17.5 49 255-303 638-687 (800)
482 PRK09825 idnK D-gluconate kina 98.3 5.3E-07 1.1E-11 89.6 3.5 66 127-198 2-69 (176)
483 PLN03210 Resistant to P. syrin 98.2 3.1E-06 6.8E-11 106.9 10.1 161 120-336 199-363 (1153)
484 TIGR02680 conserved hypothetic 98.2 2E-06 4.4E-11 109.4 7.4 60 239-301 1245-1316(1353)
485 PRK13873 conjugal transfer ATP 98.1 5.4E-05 1.2E-09 92.4 17.5 47 256-302 632-679 (811)
486 TIGR03518 ABC_perm_GldF glidin 98.1 0.00043 9.4E-09 72.3 21.9 189 432-632 2-208 (240)
487 PRK01889 GTPase RsgA; Reviewed 98.1 5.2E-06 1.1E-10 91.6 7.3 106 118-231 185-290 (356)
488 cd00009 AAA The AAA+ (ATPases 98.0 4.5E-05 9.8E-10 71.1 11.0 55 247-302 72-131 (151)
489 PF13555 AAA_29: P-loop contai 98.0 6.8E-06 1.5E-10 66.9 4.4 37 118-154 12-49 (62)
490 cd01122 GP4d_helicase GP4d_hel 98.0 3.9E-05 8.6E-10 81.2 11.4 38 115-152 17-54 (271)
491 PF13558 SbcCD_C: Putative exo 98.0 1.4E-05 3E-10 70.5 6.5 48 239-286 30-90 (90)
492 COG1682 TagG ABC-type polysacc 98.0 0.004 8.7E-08 65.8 25.7 202 427-640 16-225 (263)
493 TIGR00767 rho transcription te 98.0 1.5E-05 3.2E-10 87.9 7.6 53 82-153 130-193 (415)
494 PRK00454 engB GTP-binding prot 98.0 8.9E-05 1.9E-09 74.0 12.6 67 216-290 126-195 (196)
495 PRK06315 type III secretion sy 98.0 1.6E-05 3.4E-10 89.3 7.6 111 114-227 151-277 (442)
496 PF12679 ABC2_membrane_2: ABC- 97.9 0.0017 3.8E-08 68.3 22.5 95 507-601 88-199 (277)
497 PRK10078 ribose 1,5-bisphospho 97.9 1E-05 2.2E-10 81.0 5.0 38 128-170 2-39 (186)
498 TIGR00235 udk uridine kinase. 97.9 4.3E-06 9.4E-11 85.1 1.8 28 126-153 4-31 (207)
499 PRK08149 ATP synthase SpaL; Va 97.9 1.9E-05 4.1E-10 88.4 7.0 69 114-183 138-214 (428)
500 TIGR02524 dot_icm_DotB Dot/Icm 97.9 4.2E-05 9E-10 84.3 8.8 125 126-315 132-259 (358)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-108 Score=950.66 Aligned_cols=587 Identities=39% Similarity=0.647 Sum_probs=518.2
Q ss_pred CCCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-C
Q 036088 78 NYPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ-R 156 (737)
Q Consensus 78 ~~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~ 156 (737)
..+..++|+|++++.+.+. ++.|++|+|||++++|||++|||||||||||||||+|+|+...+ .
T Consensus 21 ~~~~~~~~~~~~~~~~~~~---------------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~ 85 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEKS---------------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLK 85 (613)
T ss_pred cccceeEEEEEEEEecCCC---------------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCc
Confidence 3456899999999987431 13588999999999999999999999999999999999998763 6
Q ss_pred cceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 157 LKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 157 ~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
.+|+|++||++.....+++.+|||+|||.++++|||+|+|.|++.+|+|...++++++++|++++++|||.+++|+++|+
T Consensus 86 ~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~ 165 (613)
T KOG0061|consen 86 LSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGN 165 (613)
T ss_pred ceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecC
Confidence 79999999998888889999999999999999999999999999999999899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
...||+||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|+
T Consensus 166 ~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs 245 (613)
T KOG0061|consen 166 PGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLS 245 (613)
T ss_pred CCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhc
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeCChhhHHHHHhhcCCCCCCCCChHHHHHHhhhhccCCCCCcchHHHhHHHhhhccccc-CCchhhHHHHHHHh
Q 036088 317 NGQAVCSEAPSNLSQFFGAFGHRIPENENQAEFALDLIRDLEDSPGGVSTLVEFNKSRQYSKRDL-DEPKCELKDAIKAS 395 (737)
Q Consensus 317 ~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 395 (737)
+|+++|+|+++++.+||+..|++||++.||+||++|+++.. +..+...+..+.++...... .....+..+...+.
T Consensus 246 ~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (613)
T KOG0061|consen 246 EGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVD----SGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKS 321 (613)
T ss_pred CCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccC----CCchhHHhHHHHHHHhhhccccchhhhhHHHHhhh
Confidence 99999999999999999999999999999999999998743 11122222223332221111 00000000001100
Q ss_pred hhcCccccccCCCCCCCCCCCcCCCC-CcCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 036088 396 IVKGKLVTTGTASNDDIGSDLTSSVQ-TYANPFWIEMMILSKRLMINSRRMPELFVVRFATVFAAAVITAGLYWQLDNSP 474 (737)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~ 474 (737)
... ....+ ....+||.|+++|++|.+++.+|||.+...|+++.+++|+++|.+||+++++.
T Consensus 322 ~~~------------------~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~ 383 (613)
T KOG0061|consen 322 LST------------------SKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDA 383 (613)
T ss_pred ccc------------------ccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCch
Confidence 000 00011 11679999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHH-HHhhhHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 036088 475 RGTQGRIGFFGFGITLIFF-QCSREIPVFLQERQIFIRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLA 553 (737)
Q Consensus 475 ~~~~~r~g~lf~~~~~~~~-~~~~~v~~~~~eR~vf~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~ 553 (737)
.++++|.|++|+.+.++.+ .++.+++.|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+||+
T Consensus 384 ~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~ 463 (613)
T KOG0061|consen 384 KGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLN 463 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999888855 455689999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCcchHHHHH
Q 036088 554 GGFSGFLFFFIIICISFWVGSSFIALISGLVSHVMVGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQS 633 (737)
Q Consensus 554 ~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~ 633 (737)
++..+|++|++++++..++++++|+++++++||..+|.++++++++++++|+||+++.++||.||+|++|+|+++|++|+
T Consensus 464 ~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~ 543 (613)
T KOG0061|consen 464 PGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEA 543 (613)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCcccccccccccccccccccCchhHHHHHHhhccccccccccCCccccChHHHHhhcCCCcCCchhhHHHHH
Q 036088 634 ILQNEYGDDSTKCFVRGVQFFEDTIFVHLPESVKIKLLKSMGHVLGKNITGSSCLATGGKILEHSGATDISKWNCFGLPL 713 (737)
Q Consensus 634 l~~nef~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~C~~~G~~~L~~~g~~~~~~w~~~~il~ 713 (737)
++.|||++....|... .+..|..+|+++++.+++++.++|.|+++++
T Consensus 544 l~~n~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~ 590 (613)
T KOG0061|consen 544 LLINQFSGGSSRCFLS---------------------------------GNLCCESTGEDVLKQLGFEDSSFWLDLLVLL 590 (613)
T ss_pred HHHHHhhccccccccC---------------------------------cCCcccccHHHHHHhcCCcccccchhHHHHH
Confidence 9999999423366310 0135778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 036088 714 GLGSSLGFCFTSFCCLAARIR 734 (737)
Q Consensus 714 ~~~~~~~~l~~~~l~~~~r~r 734 (737)
+++++||+++|++|++..|.+
T Consensus 591 ~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 591 AFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999776654
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=9.7e-105 Score=929.44 Aligned_cols=576 Identities=33% Similarity=0.509 Sum_probs=498.9
Q ss_pred ccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CcceEEEECCEeCCcccccceEEEEecCCCCCCCCC
Q 036088 113 KTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ-RLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLT 191 (737)
Q Consensus 113 ~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lT 191 (737)
+++.+|+|+|+++++||++||+|||||||||||++|+|+.+++ ..+|+|.+||++++....++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3578999999999999999999999999999999999998653 247999999999876667788999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 036088 192 IEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ-HRGVSGGERRRVSIGVDIIHDPILLFLDEPIS 270 (737)
Q Consensus 192 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~-~~~LSGGqrqRvsiA~aL~~~p~illLDEPTs 270 (737)
|+|||.|++.++.+...++++++++++++++.+||.+++|+.+|++. .++|||||||||+||++|+++|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999998887777777888899999999999999999999753 68999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHHHHHhhcCCCCCCCCChHHHH
Q 036088 271 GLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLSQFFGAFGHRIPENENQAEFA 350 (737)
Q Consensus 271 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 350 (737)
|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|++++.|+++++.+||+++|++||++.||+||+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999988999999999998789999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCCCCc-chHHHhHHHhhhcccccCCchhhHHHHHHHhhhcCccccccCCCCCCCCCCCcCCCCCcCCcHHH
Q 036088 351 LDLIRDLEDSPGGV-STLVEFNKSRQYSKRDLDEPKCELKDAIKASIVKGKLVTTGTASNDDIGSDLTSSVQTYANPFWI 429 (737)
Q Consensus 351 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 429 (737)
+++++...+.+... ....++.+.|+.+....+ ..+.........+ +.. ..........+..+||.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-----~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~ 341 (617)
T TIGR00955 276 VQVLAVIPGSENESRERIEKICDSFAVSDIGRD-----MLVNTNLWSGKAG---GLV------KDSENMEGIGYNASWWT 341 (617)
T ss_pred HHHhhcCcccccchHHHHHHHHHHHhcchhhHH-----HHHHhhhhhcccc---ccc------cccccccccccCCCHHH
Confidence 99987533222111 112233344433322111 1111110000000 000 00001122356789999
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHHHHHH-HhhhHHHHHHHhHH
Q 036088 430 EMMILSKRLMINSRRMPELFVVRFATVFAAAVITAGLYWQLDNSPRGTQGRIGFFGFGITLIFFQ-CSREIPVFLQERQI 508 (737)
Q Consensus 430 Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~r~g~lf~~~~~~~~~-~~~~v~~~~~eR~v 508 (737)
|+++|++|+++..+|||.++.+|+++++++|+++|++||++++++.++++|.|++|+.+.++.+. ++..++.|+.||++
T Consensus 342 q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v 421 (617)
T TIGR00955 342 QFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPV 421 (617)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877665 45778999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Q 036088 509 FIRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSFIALISGLVSHVM 588 (737)
Q Consensus 509 f~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~ 588 (737)
|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|++++++..++++++|+++++++|+..
T Consensus 422 ~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~ 501 (617)
T TIGR00955 422 FLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTS 501 (617)
T ss_pred HHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCcchHHHHHHHHhHhcCCcc-cccccccccccccccccCchhHH
Q 036088 589 VGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQSILQNEYGDDST-KCFVRGVQFFEDTIFVHLPESVK 667 (737)
Q Consensus 589 ~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~-~C~~~~~~~~~~~~~~~~~~~~~ 667 (737)
+|..+++++++++++|+||+++.++||+||+|++|+||++|++++++.|||++... +|.. +
T Consensus 502 ~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~-------~----------- 563 (617)
T TIGR00955 502 MALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTS-------A----------- 563 (617)
T ss_pred HHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccC-------c-----------
Confidence 99999999999999999999999999999999999999999999999999984333 5621 0
Q ss_pred HHHHhhccccccccccCCccccChHHHHhhcCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036088 668 IKLLKSMGHVLGKNITGSSCLATGGKILEHSGATDISKWNCFGLPLGLGSSLGFCFTSFCCLAARIR 734 (737)
Q Consensus 668 ~~~~~~~~~~~g~~~~~~~C~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~r~r 734 (737)
+ .++.|+.+|+++|+.+|++.++.|.+++++++++++|++++|++|++..|-|
T Consensus 564 -------------~-~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 564 -------------N-TTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred -------------C-cCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0 1235888999999999999999999999999999999999999999765544
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=3.2e-103 Score=917.57 Aligned_cols=601 Identities=28% Similarity=0.450 Sum_probs=485.8
Q ss_pred CCCceEEEEeEEEEEecCccc--CCCC--------CccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHH
Q 036088 78 NYPLLLSFNNLSYSVKVGQKL--LPDL--------PFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDA 147 (737)
Q Consensus 78 ~~~~~l~~~nls~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~ 147 (737)
..++.++|.|++|+++..... ...+ ......+.. +++.+|+|||+++++||++||+||||||||||||+
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQI-QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccccccccccccccccccccC-CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 346789999999998754210 0000 000011112 24679999999999999999999999999999999
Q ss_pred HHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc
Q 036088 148 IAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR 227 (737)
Q Consensus 148 L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 227 (737)
|+|+.+++..+|+|.+||+++... .++.+|||+|++.+++.+||+||+.|++.++.+...++++++++++++++.+||.
T Consensus 114 LaG~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~ 192 (659)
T PLN03211 114 LAGRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT 192 (659)
T ss_pred HhCCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh
Confidence 999987544589999999987543 3456899999999999999999999988777655556667778899999999999
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHh
Q 036088 228 SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILS 307 (737)
Q Consensus 228 ~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 307 (737)
+++|+.+|+...++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++
T Consensus 193 ~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~ 272 (659)
T PLN03211 193 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQ 272 (659)
T ss_pred hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH
Confidence 99999999988999999999999999999999999999999999999999999999999998899999999999877899
Q ss_pred hcceEEEecCCEEEeeCChhhHHHHHhhcCCCCCCCCChHHHHHHhhhhccCCC-----CCcchHHHhHHHhhhcccccC
Q 036088 308 LLDRLIFLSNGQAVCSEAPSNLSQFFGAFGHRIPENENQAEFALDLIRDLEDSP-----GGVSTLVEFNKSRQYSKRDLD 382 (737)
Q Consensus 308 ~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 382 (737)
+||++++|++|++++.|+++++.+||+++|++||.+.|||||++|+++...... +.........+.|+.....
T Consensus 273 ~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 350 (659)
T PLN03211 273 MFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAP-- 350 (659)
T ss_pred hhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccH--
Confidence 999999999999999999999999999999999999999999999987432110 0000111122233211100
Q ss_pred CchhhHHHHHHHhhhcCccccccCCCCCCCCCCCcCCCCCcCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 036088 383 EPKCELKDAIKASIVKGKLVTTGTASNDDIGSDLTSSVQTYANPFWIEMMILSKRLMINSRRMPELFVVRFATVFAAAVI 462 (737)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll 462 (737)
...+.................. ...........+..+||+|+++|++|++++ |||+.+..+|+++++++|++
T Consensus 351 ----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll 422 (659)
T PLN03211 351 ----KVKAAIEMSHFPQANARFVGSA---STKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALL 422 (659)
T ss_pred ----HHHHHHhhhhhhcchhhhhhcc---cccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHH
Confidence 0001110000000000000000 000000011234578999999999999988 89999999999999999999
Q ss_pred HHHHhcCCCCCcccchhhhHHHHHHHHHHH-HHHhhhHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 036088 463 TAGLYWQLDNSPRGTQGRIGFFGFGITLIF-FQCSREIPVFLQERQIFIRETAYNAYRVSSYLLAHSLVPIPSMIILSLV 541 (737)
Q Consensus 463 ~G~~f~~~~~~~~~~~~r~g~lf~~~~~~~-~~~~~~v~~~~~eR~vf~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~i 541 (737)
+|++||+++ +.++++|.|++||++.+++ +.++.+++.|+.||++|+||+.+|+|++++|++||+++|+|+.++.+++
T Consensus 423 ~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 423 AGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999985 5789999999999877754 4567899999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccccCCCCccchhhhh
Q 036088 542 FAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSFIALISGLVSHVMVGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLL 621 (737)
Q Consensus 542 f~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl 621 (737)
|++|+|||+||++++.+||+|++++++..++++++|+++++++|+..+|+.+++++++++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hccCcchHHHHHHHHhHhcCCcc-----cccccccccccccccccCchhHHHHHHhhccccccccccCCccccChHHHHh
Q 036088 622 HYTSLVKYPFQSILQNEYGDDST-----KCFVRGVQFFEDTIFVHLPESVKIKLLKSMGHVLGKNITGSSCLATGGKILE 696 (737)
Q Consensus 622 ~yiSp~~y~~~~l~~nef~~~~~-----~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~C~~~G~~~L~ 696 (737)
+|+||++|+||+++.|||++.+. +|.. +.+ .....|...++.+++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~---------~~~---------------------~~~~~c~~~~~~~~~ 628 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSL---------PHG---------------------SDRASCKFVEEDVAG 628 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCC---------ccc---------------------CCCCCCccchhhhhc
Confidence 99999999999999999984332 3521 000 011246555554443
Q ss_pred hcCCCcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 036088 697 HSGATDISKWNCFGLPLGLGSSLGFCFTSFCCL 729 (737)
Q Consensus 697 ~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~ 729 (737)
+.+.|.|+++|++++++||+++|++|++
T Consensus 629 -----~~~~~~~~~~l~~~~~~~~~l~~~~L~~ 656 (659)
T PLN03211 629 -----QISPATSVSVLIFMFVGYRLLAYLALRR 656 (659)
T ss_pred -----ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999864
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.5e-102 Score=969.99 Aligned_cols=616 Identities=25% Similarity=0.426 Sum_probs=526.8
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-Ccce
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ-RLKG 159 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G 159 (737)
.+++|+||+|+++.+ ++++.+|+|||+++++||++||+||||||||||||+|+|+.+++ +.+|
T Consensus 758 ~~l~~~nl~~~~~~~----------------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G 821 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIK----------------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGG 821 (1394)
T ss_pred ceEEEEeeEEEecCC----------------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCccee
Confidence 468999999998632 12467999999999999999999999999999999999998642 3479
Q ss_pred EEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
+|.+||+++.. ..++.+|||+|+|.+++.+||+|||.|++.++.+...++++++++++++++.+||.+++|+.+|+. .
T Consensus 822 ~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~ 899 (1394)
T TIGR00956 822 DRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-G 899 (1394)
T ss_pred EEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-C
Confidence 99999999853 467789999999999999999999999998887666667777889999999999999999999854 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPI-LLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~-illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
.+|||||||||+||++|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++|
T Consensus 900 ~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~G 979 (1394)
T TIGR00956 900 EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979 (1394)
T ss_pred CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCC
Confidence 4899999999999999999997 999999999999999999999999999889999999999997678899999999997
Q ss_pred -EEEeeCCh----hhHHHHHhhcCC-CCCCCCChHHHHHHhhhhccCCCCCcchHHHhHHHhhhcccccCCchhhHHHHH
Q 036088 319 -QAVCSEAP----SNLSQFFGAFGH-RIPENENQAEFALDLIRDLEDSPGGVSTLVEFNKSRQYSKRDLDEPKCELKDAI 392 (737)
Q Consensus 319 -~iv~~G~~----~~~~~~f~~~g~-~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (737)
++++.|++ +++.+||+..|+ +||++.|||||++|+++...... ...++.+.|+.+....+ ..+.+
T Consensus 980 G~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~----~~~~~~~~~~~s~~~~~-----~~~~~ 1050 (1394)
T TIGR00956 980 GQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH----ANQDYHEVWRNSSEYQA-----VKNEL 1050 (1394)
T ss_pred CEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc----hhccHHHHHhcCHHHHH-----HHHHH
Confidence 99999997 578999999996 99999999999999987422211 11345566765443221 11111
Q ss_pred HHhhhcCccccccCCCCCCCCCCCcCCCCCcCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 036088 393 KASIVKGKLVTTGTASNDDIGSDLTSSVQTYANPFWIEMMILSKRLMINSRRMPELFVVRFATVFAAAVITAGLYWQLDN 472 (737)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~ 472 (737)
..... . ....+ .........+++.|+|+|+++|++|+++++||||.++.+|+++++++|+++|++||++++
T Consensus 1051 ~~~~~-~--~~~~~------~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~ 1121 (1394)
T TIGR00956 1051 DRLEA-E--LSKAE------DDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT 1121 (1394)
T ss_pred HHhhc-c--cccCc------cccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 11100 0 00000 000111224678999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhhHHHHHHHHHHHHHHhhhHHHHHHHhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 036088 473 SPRGTQGRIGFFGFGITLIFFQCSREIPVFLQERQIF-IRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVG 551 (737)
Q Consensus 473 ~~~~~~~r~g~lf~~~~~~~~~~~~~v~~~~~eR~vf-~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~g 551 (737)
++.++|+|+|++|+.+.+..+.....+|.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|
T Consensus 1122 ~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~G 1201 (1394)
T TIGR00956 1122 SLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVG 1201 (1394)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeeccc
Confidence 9999999999999888777666677899999999886 999999999999999999999999999999999999999999
Q ss_pred CCCcHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhcc
Q 036088 552 LAGGFSG-------FLFFFIIICISFWVGSSFIALISGLVSHVMVGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYT 624 (737)
Q Consensus 552 l~~~~~~-------f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yi 624 (737)
|++++.. |++|++++++..++++++|+++++++|+..+|..+++++++++++|+||+++.++||.||+|++|+
T Consensus 1202 l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~ 1281 (1394)
T TIGR00956 1202 FYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRC 1281 (1394)
T ss_pred ccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhc
Confidence 9988766 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhHhcCCcccccccccccccccccccCchhHHHHHHhhccccccccccCCcc---c-cChHHHHhhcCC
Q 036088 625 SLVKYPFQSILQNEYGDDSTKCFVRGVQFFEDTIFVHLPESVKIKLLKSMGHVLGKNITGSSC---L-ATGGKILEHSGA 700 (737)
Q Consensus 625 Sp~~y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~C---~-~~G~~~L~~~g~ 700 (737)
||++|+++|++.|||++...+|...+...+++ |.++.|..+...|....|++.-.+.++..| + .+|+++|+.+|+
T Consensus 1282 sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~p-p~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~ 1360 (1394)
T TIGR00956 1282 SPFTYLVQALLSTGLADVPVTCKVKELLTFNP-PSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISS 1360 (1394)
T ss_pred CHHHHHHHHHHHHHcCCCeeecCccccceecC-CCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCC
Confidence 99999999999999995444898777777754 445677777778888888876555444445 4 799999999999
Q ss_pred CcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036088 701 TDISKWNCFGLPLGLGSSLGFCFTSFCCLAARIR 734 (737)
Q Consensus 701 ~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~r~r 734 (737)
+.+++|+|++|+++|++++ +++++.|.+..|+|
T Consensus 1361 ~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1361 KYSGRWRNFGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred cccccccchhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 9999999999999999988 77888888876665
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=7.7e-101 Score=955.71 Aligned_cols=594 Identities=26% Similarity=0.418 Sum_probs=504.5
Q ss_pred CCCCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 036088 77 PNYPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR 156 (737)
Q Consensus 77 ~~~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~ 156 (737)
+..|..++|+||+|.++.+.... ......+++.+|+|||+++++|+++|||||||||||||||+|+|+.+++.
T Consensus 862 ~~~~~~~~~~~v~y~v~~~~~~~-------~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~ 934 (1470)
T PLN03140 862 PFTPLAMSFDDVNYFVDMPAEMK-------EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 934 (1470)
T ss_pred CCCcceEEEEEEEEEEccCcccc-------ccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCc
Confidence 45567899999999997542110 00011234579999999999999999999999999999999999976555
Q ss_pred cceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 157 LKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 157 ~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
.+|+|.+||++......++.+|||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.+||.+++|+.+|+
T Consensus 935 ~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~ 1014 (1470)
T PLN03140 935 IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGL 1014 (1470)
T ss_pred ccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCC
Confidence 78999999998765556677899999999999999999999998877766666677778899999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
..+++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+
T Consensus 1015 ~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred CCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence 77789999999999999999999999999999999999999999999999998899999999999877899999999999
Q ss_pred C-CEEEeeCCh----hhHHHHHhhc-CC-CCCCCCChHHHHHHhhhhccCCCCCcchHHHhHHHhhhcccccCCchhhHH
Q 036088 317 N-GQAVCSEAP----SNLSQFFGAF-GH-RIPENENQAEFALDLIRDLEDSPGGVSTLVEFNKSRQYSKRDLDEPKCELK 389 (737)
Q Consensus 317 ~-G~iv~~G~~----~~~~~~f~~~-g~-~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (737)
+ |+++|+|++ +++.+||+++ |. +||++.|||||++|+++...+. ....++.+.|+.+..+.. ..
T Consensus 1095 ~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~----~~~~d~~~~~~~s~~~~~-----~~ 1165 (1470)
T PLN03140 1095 RGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV----KLGIDFAEHYKSSSLYQR-----NK 1165 (1470)
T ss_pred CCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc----cccchHHHHHhccHHHHH-----HH
Confidence 6 899999996 5899999997 66 4999999999999998642211 122367778877654432 11
Q ss_pred HHHHHhhhcCccccccCCCCCCCCCCCcCCCCCcCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcC
Q 036088 390 DAIKASIVKGKLVTTGTASNDDIGSDLTSSVQTYANPFWIEMMILSKRLMINSRRMPELFVVRFATVFAAAVITAGLYWQ 469 (737)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~ 469 (737)
+.+.+ ..... . ..........++.++|+|+++|++|+++++||||.++.+|+++++++|+++|++||+
T Consensus 1166 ~~~~~-~~~~~-----~------~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~ 1233 (1470)
T PLN03140 1166 ALVKE-LSTPP-----P------GASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWK 1233 (1470)
T ss_pred HHHHH-hccCC-----C------CccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 11111 11000 0 000111124678899999999999999999999999999999999999999999999
Q ss_pred CCCCc---ccchhhhHHHHHHHHHHHHH-HhhhHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036088 470 LDNSP---RGTQGRIGFFGFGITLIFFQ-CSREIPVFLQERQIFIRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAAT 545 (737)
Q Consensus 470 ~~~~~---~~~~~r~g~lf~~~~~~~~~-~~~~v~~~~~eR~vf~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i 545 (737)
++++. .+++++.|++|+++.++.+. +.+.+|.|..||++|+||+++|+|++++|++|++++|+|+.++.+++|++|
T Consensus 1234 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i 1313 (1470)
T PLN03140 1234 VGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLI 1313 (1470)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99875 46778899999888887664 456789999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccC
Q 036088 546 TFWAVGLAGGFSGFLFFFIIICISFWVGSSFIALISGLVSHVMVGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYTS 625 (737)
Q Consensus 546 ~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiS 625 (737)
+|||+||++++.+||+|+++++++.++++++|+++++++||..+|..+++++++++++|+||++|.++||+||+|++|+|
T Consensus 1314 ~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~is 1393 (1470)
T PLN03140 1314 VYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWIC 1393 (1470)
T ss_pred HHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhHhcCCcccccccccccccccccccCchhHHHHHHhhccccccccccCCccccChHHH-HhhcCCCcCC
Q 036088 626 LVKYPFQSILQNEYGDDSTKCFVRGVQFFEDTIFVHLPESVKIKLLKSMGHVLGKNITGSSCLATGGKI-LEHSGATDIS 704 (737)
Q Consensus 626 p~~y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~C~~~G~~~-L~~~g~~~~~ 704 (737)
|++|+++|++.|||++...+|.. +..+ ...+++++ ++.|||++++
T Consensus 1394 p~~y~~~~l~~~~f~~~~~~~~~------~~~~----------------------------~~~~~~~~~~~~~g~~~~~ 1439 (1470)
T PLN03140 1394 PVAWTVYGLIVSQYGDVEDTIKV------PGGA----------------------------PDPTIKWYIQDHYGYDPDF 1439 (1470)
T ss_pred HHHHHHhhhHHHHhCCCCCcccC------CCCC----------------------------CCCcHHHHHHHhcCcCccc
Confidence 99999999999999943334521 1000 00245777 4789999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036088 705 KWNCFGLPLGLGSSLGFCFTSFCCLAAR 732 (737)
Q Consensus 705 ~w~~~~il~~~~~~~~~l~~~~l~~~~r 732 (737)
+|++++|+++|+++|+++++++++...-
T Consensus 1440 ~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1440 MGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998876543
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4e-101 Score=961.44 Aligned_cols=632 Identities=24% Similarity=0.351 Sum_probs=520.8
Q ss_pred CCceEEEEeEEEEEecCccc-CCCCC------cc----Cc-cccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHH
Q 036088 79 YPLLLSFNNLSYSVKVGQKL-LPDLP------FV----GS-QDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMD 146 (737)
Q Consensus 79 ~~~~l~~~nls~~~~~~~~~-~~~~~------~~----~~-~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~ 146 (737)
+...+.|+||++........ .+.+. .. .. .+++++++++|+|||+++++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 35679999999987432211 11110 00 00 122334578999999999999999999999999999999
Q ss_pred HHHcCCCC--CCcceEEEECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCC----CCcHHHHHHH-H
Q 036088 147 AIAGRISK--QRLKGTVTLNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPR----SLSKEKKRKR-V 217 (737)
Q Consensus 147 ~L~G~~~~--~~~~G~I~~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~----~~~~~~~~~~-v 217 (737)
+|+|+.++ .+.+|+|.+||+++.. ...++.++||+|+|.+++.+||+|||.|+++++.+. ..++++..++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99999642 2468999999998753 234566899999999999999999999998876543 2344444434 5
Q ss_pred HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEE
Q 036088 218 DALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIM 296 (737)
Q Consensus 218 ~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~ 296 (737)
+++++.+||++++|+.+|++.+++|||||||||+||++|+.+|+|++|||||+|||+.++.++++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7799999999999999999999999999999999999999999999999999999999999999999999875 999999
Q ss_pred EecCCcHHHHhhcceEEEecCCEEEeeCChhhHHHHHhhcCCCCCCCCChHHHHHHhhhhccCC------CCCcchHHHh
Q 036088 297 SIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLSQFFGAFGHRIPENENQAEFALDLIRDLEDS------PGGVSTLVEF 370 (737)
Q Consensus 297 ~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~------~~~~~~~~~~ 370 (737)
++|||+.+++++||+|++|++|+++++|+++++.+||+++|++||++.||+||++++++..++. ........++
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~ 345 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEF 345 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHHH
Confidence 9999988899999999999999999999999999999999999999999999999998743221 1112345567
Q ss_pred HHHhhhcccccCCchhhHHHHHHHhhhcCc-------cccccCCCCCCCCCCCcCCCCCcCCcHHHHHHHHHHHHHHHHh
Q 036088 371 NKSRQYSKRDLDEPKCELKDAIKASIVKGK-------LVTTGTASNDDIGSDLTSSVQTYANPFWIEMMILSKRLMINSR 443 (737)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~ 443 (737)
.+.|+.+..++. +.+.+.....+.. ....... ...........+..|+|+|+++|++|++++.|
T Consensus 346 ~~~~~~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~ 416 (1394)
T TIGR00956 346 ETYWRNSPEYAQ-----LMKEIDEYLDRCSESDTKEAYRESHVA----KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMK 416 (1394)
T ss_pred HHHHHcCHHHHH-----HHHHHHHHhhhccchhhHHHHHHHHHh----hhcccccCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 778877654332 1111111100000 0000000 00001122335778999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHhcCCCCChHHH
Q 036088 444 RMPELFVVRFATVFAAAVITAGLYWQLDNSPRGTQGRIGFFGFGITLIFFQCSREIPVFLQERQIFIRETAYNAYRVSSY 523 (737)
Q Consensus 444 Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~v~~~~~eR~vf~RE~~~g~Y~~~~y 523 (737)
|||.++.+|+++++++|+++|++||++++++.++++|.|++||++.+..+.++..++.++.||+||+||+.+++|++++|
T Consensus 417 Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay 496 (1394)
T TIGR00956 417 GNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSAD 496 (1394)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999888888889989999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 036088 524 LLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSFIALISGLVSHVMVGFIIVACLLGYFLV 603 (737)
Q Consensus 524 ~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~a~~~~~~~~~~~~l 603 (737)
++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++++++++++||..+|+.+++++++++++
T Consensus 497 ~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~l 576 (1394)
T TIGR00956 497 AIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSI 576 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCccchhhhhhccCcchHHHHHHHHhHhcCCcccccccccccccccccccCchh-HHHHHHhhccccccccc
Q 036088 604 FSGAYIPRDQMRSFWVLLHYTSLVKYPFQSILQNEYGDDSTKCFVRGVQFFEDTIFVHLPES-VKIKLLKSMGHVLGKNI 682 (737)
Q Consensus 604 fsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~ 682 (737)
|+||+||.++||+||+|++|+||++|+|||++.|||++...+|.. ..|.+| +|+.. ..++.|+..|+.+|.
T Consensus 577 f~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~----~~p~g~--~y~~~~~~~~~C~~~g~~~g~-- 648 (1394)
T TIGR00956 577 YTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQ----YVPSGG--GYDNLGVTNKVCTVVGAEPGQ-- 648 (1394)
T ss_pred HcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccc----cccCCC--CCCCCCccCccccCCCCcCCc--
Confidence 999999999999999999999999999999999999943348942 112221 11110 013457766666554
Q ss_pred cCCccccChHHHHh-hcCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036088 683 TGSSCLATGGKILE-HSGATDISKWNCFGLPLGLGSSLGFCFTSFCCLAA 731 (737)
Q Consensus 683 ~~~~C~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~ 731 (737)
|.++|+++|+ .||++++++|+|++|+++|+++|++++++++.+..
T Consensus 649 ----~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 649 ----DYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred ----ccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4589999998 59999999999999999999999999999887654
No 7
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-102 Score=915.03 Aligned_cols=578 Identities=27% Similarity=0.461 Sum_probs=505.9
Q ss_pred ccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCH
Q 036088 113 KTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTI 192 (737)
Q Consensus 113 ~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV 192 (737)
+++++|+||++.++||-++||||+||||||||||+|+||...+.++|+|++||.|.++..++|.+|||.|+|.|.+.+||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 56889999999999999999999999999999999999988888899999999999888899999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-cEEEEeCCCCC
Q 036088 193 EETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDP-ILLFLDEPISG 271 (737)
Q Consensus 193 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p-~illLDEPTsg 271 (737)
||.|.|+|.+|++.+++.+++.+.||++++.|+|++++|.+||.++ .|||.+||||++||.+|+.+| .||||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 9999999999999999999999999999999999999999999877 999999999999999999999 99999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC-CEEEeeCChh----hHHHHHhhcC-CCCCCCCC
Q 036088 272 LDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN-GQAVCSEAPS----NLSQFFGAFG-HRIPENEN 345 (737)
Q Consensus 272 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv~~G~~~----~~~~~f~~~g-~~~p~~~n 345 (737)
||+.++..|++.+|+++++|+||+||+|||+.++++.||++++|++ |++||.|+.. .+++||++.| .+||+..|
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~N 1040 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDEN 1040 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCC
Confidence 9999999999999999999999999999999999999999999987 7999999975 4678999986 89999999
Q ss_pred hHHHHHHhhhhccCCCCCcchHHHhHHHhhhcccccCCchhhHHHHHHHhhhcCccccccCCCCCCCCCCCcCCCCCcCC
Q 036088 346 QAEFALDLIRDLEDSPGGVSTLVEFNKSRQYSKRDLDEPKCELKDAIKASIVKGKLVTTGTASNDDIGSDLTSSVQTYAN 425 (737)
Q Consensus 346 ~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (737)
||||++|+++...+. ..-.||++.|+.|.+++. ..+.+.+-... .++ .........+|+.
T Consensus 1041 PA~~mLevi~~~~~~----~~~~D~a~~w~~S~e~k~-----~~e~v~~l~~~---~~~--------~~~~~~~~~~fa~ 1100 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEA----SLSVDFAEIWKNSEEYKR-----NKELVKELSQP---PPG--------FSTDLEFKTRFAQ 1100 (1391)
T ss_pred hHHHHHhhccccccc----ccCccHHHHHhccHHHHH-----HHHHHHHHhcC---Ccc--------CCcccccccccch
Confidence 999999999754332 122478999999887654 22222221110 000 0111233446899
Q ss_pred cHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHHHHHHHhh-hHHHHHH
Q 036088 426 PFWIEMMILSKRLMINSRRMPELFVVRFATVFAAAVITAGLYWQLDNSPRGTQGRIGFFGFGITLIFFQCSR-EIPVFLQ 504 (737)
Q Consensus 426 s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~-~v~~~~~ 504 (737)
|+|.|++.+++|++..+||+|.++.+|+++.++.||++|+.||+++++..++||.+|++|+.+.+......+ ..+.+..
T Consensus 1101 s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~ 1180 (1391)
T KOG0065|consen 1101 SLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVAT 1180 (1391)
T ss_pred hHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999998887766555 4455677
Q ss_pred HhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036088 505 ERQIFIRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSFIALISGLV 584 (737)
Q Consensus 505 eR~vf~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~ 584 (737)
||.+++||+++|+||+.+|++|++++|+|+.++++++|.+|+|+|+|+.+++.+|++|++.+++..++.+++|+++.+++
T Consensus 1181 e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~t 1260 (1391)
T KOG0065|consen 1181 ERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLT 1260 (1391)
T ss_pred hhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCcchHHHHHHHHhHhcCCcccccccccccccccccccCch
Q 036088 585 SHVMVGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQSILQNEYGDDSTKCFVRGVQFFEDTIFVHLPE 664 (737)
Q Consensus 585 p~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~~~ 664 (737)
||.++|..+.++++.++.+||||++|++.||.||+|+||+||+.|..++++..+++|-...|...+...+++ |.+..+.
T Consensus 1261 Pn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~p-p~g~tcg 1339 (1391)
T KOG0065|consen 1261 PNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDP-PSGQTCG 1339 (1391)
T ss_pred CChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCC-CCCcCHH
Confidence 999999999999999999999999999999999999999999999999999999995555998776555543 3344444
Q ss_pred hHHHHHHhhccccccccccCC---ccc-cChHHHHhhcCCCcCCchhhHHHH
Q 036088 665 SVKIKLLKSMGHVLGKNITGS---SCL-ATGGKILEHSGATDISKWNCFGLP 712 (737)
Q Consensus 665 ~~~~~~~~~~~~~~g~~~~~~---~C~-~~G~~~L~~~g~~~~~~w~~~~il 712 (737)
.....+....+++.-...+.. .|+ ..++++|..++++..+.|+|+||.
T Consensus 1340 e~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrnfgi~ 1391 (1391)
T KOG0065|consen 1340 EFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRNFGIF 1391 (1391)
T ss_pred HHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHhhccC
Confidence 443444443233322222223 354 679999999999999999999873
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.6e-98 Score=930.11 Aligned_cols=600 Identities=24% Similarity=0.378 Sum_probs=499.3
Q ss_pred CceEEEEeEEEEEecCcc--cCCCCCc---------c---CccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHH
Q 036088 80 PLLLSFNNLSYSVKVGQK--LLPDLPF---------V---GSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLM 145 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~--~~~~~~~---------~---~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL 145 (737)
...+.|+||++.-..... ..+.+.. . .....++.++.||+|||+.++|||+++|+|||||||||||
T Consensus 129 ~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLL 208 (1470)
T PLN03140 129 TVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLL 208 (1470)
T ss_pred CCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHH
Confidence 457999999997752211 1121100 0 0001223457899999999999999999999999999999
Q ss_pred HHHHcCCCCC-CcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCC-------CCcHHHH----
Q 036088 146 DAIAGRISKQ-RLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPR-------SLSKEKK---- 213 (737)
Q Consensus 146 ~~L~G~~~~~-~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~-------~~~~~~~---- 213 (737)
|+|+|++++. ..+|+|.+||+++.....++.++||+|+|.+++++||+|||.|+++++.+. +..+.++
T Consensus 209 k~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~ 288 (1470)
T PLN03140 209 LALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGI 288 (1470)
T ss_pred HHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccC
Confidence 9999998653 348999999999865445677899999999999999999999998765321 1111111
Q ss_pred --------------------HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 036088 214 --------------------RKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLD 273 (737)
Q Consensus 214 --------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD 273 (737)
+..++++++.+||++++||.||++..++|||||||||+||++|+.+|++|||||||+|||
T Consensus 289 ~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLD 368 (1470)
T PLN03140 289 FPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 368 (1470)
T ss_pred CCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCcc
Confidence 124678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHHHHHhhcCCCCCCCCChHHHHHH
Q 036088 274 STSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLSQFFGAFGHRIPENENQAEFALD 352 (737)
Q Consensus 274 ~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~ 352 (737)
+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++|+++|+|+++++.+||+++|++||++.|||||+++
T Consensus 369 s~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~ 448 (1470)
T PLN03140 369 SSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQE 448 (1470)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHH
Confidence 9999999999999987 489999999999888999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCC-----C---CcchHHHhHHHhhhcccccCCchhhHHHHHHHhhhcCccccccCCCCCCCCCCCcCCCCCcC
Q 036088 353 LIRDLEDSP-----G---GVSTLVEFNKSRQYSKRDLDEPKCELKDAIKASIVKGKLVTTGTASNDDIGSDLTSSVQTYA 424 (737)
Q Consensus 353 ~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (737)
+++..+... . ......++.+.|+.+..+.. +.+.+.....+.+ . .........|.
T Consensus 449 v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~-----~~~~~~~~~~~~~---~---------~~~~~~~~~y~ 511 (1470)
T PLN03140 449 VTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQ-----LENELSVPFDKSQ---S---------HKAALVFSKYS 511 (1470)
T ss_pred hcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHH-----HHHHHhhhhhhhh---c---------ccccccCCCCc
Confidence 987533210 0 11234556667766543321 2222211110000 0 00111234588
Q ss_pred CcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCc---ccchhhhHHHHHHHHHHHHHHhhhHHH
Q 036088 425 NPFWIEMMILSKRLMINSRRMPELFVVRFATVFAAAVITAGLYWQLDNSP---RGTQGRIGFFGFGITLIFFQCSREIPV 501 (737)
Q Consensus 425 ~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~---~~~~~r~g~lf~~~~~~~~~~~~~v~~ 501 (737)
.++|.|++.|++|+++..+||+.+++.|+++.+++|+++|++||+++.++ .+.+.+.|.+||++.+.+++++..++.
T Consensus 512 ~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~ 591 (1470)
T PLN03140 512 VPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELAL 591 (1470)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999997553 345667899999988888888899999
Q ss_pred HHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036088 502 FLQERQIFIRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSFIALIS 581 (737)
Q Consensus 502 ~~~eR~vf~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~ 581 (737)
++.||+||+|||..++|++++|++|++++++|+.++.+++|++|+|||+||++++.+||+|+++++++.+++++++++++
T Consensus 592 ~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~ 671 (1470)
T PLN03140 592 MIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIA 671 (1470)
T ss_pred HHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCchHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCcchHHHHHHHHhHhcCCccc-ccccccccccccccc
Q 036088 582 GLVSHVMVGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQSILQNEYGDDSTK-CFVRGVQFFEDTIFV 660 (737)
Q Consensus 582 a~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~~-C~~~~~~~~~~~~~~ 660 (737)
+++|++.+|+.+++++++++++|+||+|+.++||+||+|++|+||++|+|+|++.|||.+.... |. ++
T Consensus 672 a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~------~~----- 740 (1470)
T PLN03140 672 SVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKM------AS----- 740 (1470)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcc------cC-----
Confidence 9999999999999999999999999999999999999999999999999999999999722111 10 00
Q ss_pred cCchhHHHHHHhhccccccccccCCccccChHHHHhhcCCCcCC--chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036088 661 HLPESVKIKLLKSMGHVLGKNITGSSCLATGGKILEHSGATDIS--KWNCFGLPLGLGSSLGFCFTSFCCLAA 731 (737)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~g~~~~~~~C~~~G~~~L~~~g~~~~~--~w~~~~il~~~~~~~~~l~~~~l~~~~ 731 (737)
+.|..+|+++|+.+|+.+.+ .|+|+++|++|+++|++++|++|.+..
T Consensus 741 ------------------------~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 741 ------------------------DNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ------------------------CCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 01236899999999997654 599999999999999999999998754
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-90 Score=814.21 Aligned_cols=588 Identities=28% Similarity=0.473 Sum_probs=514.4
Q ss_pred cccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CcceEEEECCEeCCcccccceEEEEecCCCCCCCC
Q 036088 112 KKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ-RLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSML 190 (737)
Q Consensus 112 ~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~l 190 (737)
+...++|+|+|+-++||+++.++||.||||||||++|+|-.+.. ..+|+|.+||.+.+....++.++|.+|+|.|+|+|
T Consensus 125 ~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 125 KKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred cccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccccee
Confidence 34568999999999999999999999999999999999997642 23689999999987655577889999999999999
Q ss_pred CHHHHHHHhhhhcCCCC----CcHHHHH-HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 036088 191 TIEETLMFSAEFRLPRS----LSKEKKR-KRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFL 265 (737)
Q Consensus 191 TV~e~l~~~~~~~~~~~----~~~~~~~-~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illL 265 (737)
||+|+|.|+++++.+.. ..+.++. +..+.+++.+||++|+||+||++..||+||||||||++|.+++.+++++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 99999999999987732 2333322 267899999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHHHHHhhcCCCCCCCC
Q 036088 266 DEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLSQFFGAFGHRIPENE 344 (737)
Q Consensus 266 DEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~ 344 (737)
||+|.|||+.++.++++.|+++++. +.|+++++|||+.+++++||+|++|.+|+++|+||.+++.+||+++|+.||+..
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~ 364 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRK 364 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCcc
Confidence 9999999999999999999999974 889999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhhhhccCC--------CCCcchHHHhHHHhhhcccccCCchhhHHHHHHHhhhcCccccccCCCCCCCCCCC
Q 036088 345 NQAEFALDLIRDLEDS--------PGGVSTLVEFNKSRQYSKRDLDEPKCELKDAIKASIVKGKLVTTGTASNDDIGSDL 416 (737)
Q Consensus 345 n~ad~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (737)
++|||+.+++++.... +.......++.+.|..++.+.+ +...+.....+.+ ....
T Consensus 365 ~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~-----l~~~l~~~~~~~k------------~~~~ 427 (1391)
T KOG0065|consen 365 GTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAK-----LKKELSKPYDKSK------------KHKA 427 (1391)
T ss_pred CHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHH-----HHHHhcchhhhhh------------ccch
Confidence 9999999999832211 1111223567777877766543 2222222221111 0112
Q ss_pred cCCCCCcCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCC-CCcccchhhhHHHHHHHHHHHHHH
Q 036088 417 TSSVQTYANPFWIEMMILSKRLMINSRRMPELFVVRFATVFAAAVITAGLYWQLD-NSPRGTQGRIGFFGFGITLIFFQC 495 (737)
Q Consensus 417 ~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~-~~~~~~~~r~g~lf~~~~~~~~~~ 495 (737)
....++|..|.|.|++.|++|.+..+.||..++..++++.+++|+++|++|++++ .+..+.+.|.|++||++.+.++..
T Consensus 428 al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~ 507 (1391)
T KOG0065|consen 428 ALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG 507 (1391)
T ss_pred hhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh
Confidence 3445678999999999999999999999999999999999999999999999999 778889999999999999999999
Q ss_pred hhhHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHH
Q 036088 496 SREIPVFLQERQIFIRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSS 575 (737)
Q Consensus 496 ~~~v~~~~~eR~vf~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~ 575 (737)
++.++...+.|+||+|||...+|++++|.++.++.++|+.++..++|.+|+||++||.+++++||.|++++++...|+++
T Consensus 508 laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~ 587 (1391)
T KOG0065|consen 508 LAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSG 587 (1391)
T ss_pred HHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCcchHHHHHHHHhHhcCCccccccccccccc
Q 036088 576 FIALISGLVSHVMVGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQSILQNEYGDDSTKCFVRGVQFFE 655 (737)
Q Consensus 576 ~g~~i~a~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~~C~~~~~~~~~ 655 (737)
+++++++++++...|+.++++.++...+++||+||.++||+||+|++|+||+.|+||+++.|||++.+-.|. |
T Consensus 588 lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~-------p 660 (1391)
T KOG0065|consen 588 LFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCS-------P 660 (1391)
T ss_pred HHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCC-------C
Confidence 999999999999999999999999999999999999999999999999999999999999999994444894 2
Q ss_pred ccc-cccCchhHHHHHHhhccccccccccCCccccChHHHHh-hcCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036088 656 DTI-FVHLPESVKIKLLKSMGHVLGKNITGSSCLATGGKILE-HSGATDISKWNCFGLPLGLGSSLGFCFTSFCCLAA 731 (737)
Q Consensus 656 ~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~C~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~ 731 (737)
.+| +.+.+ ..++.|+..|+.+|+.+ +.|+++++ +|++++.+.|+|+||++||.++|.++..+++.+..
T Consensus 661 ~gp~y~n~~--~~~~~c~~~~~~~G~~~------v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 661 SGPAYDNIS--IENKVCAATGATLGNDY------VSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred CCCcccccc--cccccchhhccccCceE------EecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 222 11222 23677888888888775 78899994 59999999999999999999999999888877654
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-54 Score=420.31 Aligned_cols=218 Identities=30% Similarity=0.491 Sum_probs=199.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|. ...+|+|||+++++||+++|+|||||||||||+||.|+..++ +|+|
T Consensus 2 mi~i~~l~K~fg--------------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~--~G~I 59 (240)
T COG1126 2 MIEIKNLSKSFG--------------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD--SGSI 59 (240)
T ss_pred eEEEEeeeEEeC--------------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC--CceE
Confidence 689999999996 467999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGS----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.++|+++.. ...|+.+|+|||+..|||++||.||+.++...- ...++++.++++.++|+++||.+.+|..
T Consensus 60 ~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y---- 133 (240)
T COG1126 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY---- 133 (240)
T ss_pred EECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC----
Confidence 999987743 347788999999999999999999999975432 3567888899999999999999988654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
+..|||||||||+|||||+.+|+++|+|||||+|||+...++++.+++|+++|.|.||+||+.. .+.+.+|||++|++
T Consensus 134 -P~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd~ 211 (240)
T COG1126 134 -PAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMDQ 211 (240)
T ss_pred -ccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEeeC
Confidence 5579999999999999999999999999999999999999999999999999999999999987 48899999999999
Q ss_pred CEEEeeCChhhH
Q 036088 318 GQAVCSEAPSNL 329 (737)
Q Consensus 318 G~iv~~G~~~~~ 329 (737)
|+++..|+++++
T Consensus 212 G~iie~g~p~~~ 223 (240)
T COG1126 212 GKIIEEGPPEEF 223 (240)
T ss_pred CEEEEecCHHHH
Confidence 999999988876
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-50 Score=412.78 Aligned_cols=222 Identities=27% Similarity=0.414 Sum_probs=200.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|... ..+...+|+|||++|++||+.+|+|.||||||||+++|.++..|+ +|+|
T Consensus 1 mI~l~~vsK~~~~~---------------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt--sG~v 63 (339)
T COG1135 1 MIELENVSKTFGQT---------------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT--SGSV 63 (339)
T ss_pred CeEEEeeeeeeccC---------------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC--CceE
Confidence 58999999999742 112456999999999999999999999999999999999997754 9999
Q ss_pred EECCEeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLGS------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|+++.. ...|+.+|++||+..|+...||.||++|..++. +.++++.++|+.++|+.+||++.++.
T Consensus 64 ~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~--- 137 (339)
T COG1135 64 FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR--- 137 (339)
T ss_pred EEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc---
Confidence 999988764 246778999999999999999999999998775 47789999999999999999987754
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
++.+|||||||||+|||||+.+|+|||+|||||+|||.+...|+++|+++.++ |.||+++||++. -+.++||||.+
T Consensus 138 --yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVav 214 (339)
T COG1135 138 --YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAV 214 (339)
T ss_pred --CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheE
Confidence 45679999999999999999999999999999999999999999999999875 999999999986 58999999999
Q ss_pred ecCCEEEeeCChhhH
Q 036088 315 LSNGQAVCSEAPSNL 329 (737)
Q Consensus 315 L~~G~iv~~G~~~~~ 329 (737)
|++|++++.|+..++
T Consensus 215 m~~G~lvE~G~v~~v 229 (339)
T COG1135 215 LDQGRLVEEGTVSEV 229 (339)
T ss_pred eeCCEEEEeccHHHh
Confidence 999999999998876
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-50 Score=398.89 Aligned_cols=221 Identities=29% Similarity=0.493 Sum_probs=201.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+|+|||+.|. .+.+++|+|++|++||+++++|||||||||+||+|.+++.|+ +|+|
T Consensus 1 MI~~~nvsk~y~--------------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept--~G~I 58 (309)
T COG1125 1 MIEFENVSKRYG--------------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT--SGEI 58 (309)
T ss_pred CceeeeeehhcC--------------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC--CceE
Confidence 589999999996 367999999999999999999999999999999999999855 9999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
++||+++.. ..+|+.+|||-|+-.|||++||.||+.+...+. ++++++.+++++|+|+.+||+.. ...++.
T Consensus 59 ~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred EECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 999999875 357888999999999999999999999987765 56788899999999999999752 122566
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
+++|||||+|||.+||||+.+|+|||||||+++|||.++.++.+.++++.++ |+|||++|||.. ++++++|||.+|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC
Confidence 7889999999999999999999999999999999999999999999999875 999999999986 68999999999999
Q ss_pred CEEEeeCChhhHHH
Q 036088 318 GQAVCSEAPSNLSQ 331 (737)
Q Consensus 318 G~iv~~G~~~~~~~ 331 (737)
|+++..++|+++..
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999854
No 13
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.8e-49 Score=392.50 Aligned_cols=223 Identities=33% Similarity=0.504 Sum_probs=201.1
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
...|++++|++++. .+.|++|||++|++||+++||||||+|||||||+|.|+++|+ +|
T Consensus 6 ~~~I~vr~v~~~fG--------------------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~--~G 63 (263)
T COG1127 6 EPLIEVRGVTKSFG--------------------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD--KG 63 (263)
T ss_pred cceEEEeeeeeecC--------------------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC--CC
Confidence 34799999999996 467999999999999999999999999999999999999865 89
Q ss_pred EEEECCEeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 160 TVTLNGEVLGS------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 160 ~I~~~G~~~~~------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
+|.++|+++.. ...++++|++||+..||..|||+||+.|..+-. ..++++..++.+..-|+.+||....
T Consensus 64 eI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~--- 138 (263)
T COG1127 64 EILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAA--- 138 (263)
T ss_pred eEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhh---
Confidence 99999999853 146778999999999999999999999976433 3578888899999999999998652
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.+..+.+||||||||++||||++.||+|||+||||+||||.++..+.+++++|.+. |.|+|++|||.. +++.+|||+
T Consensus 139 -~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv 216 (263)
T COG1127 139 -ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRV 216 (263)
T ss_pred -hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceE
Confidence 24567789999999999999999999999999999999999999999999999876 999999999987 589999999
Q ss_pred EEecCCEEEeeCChhhHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~ 331 (737)
++|.+|++++.|+++++.+
T Consensus 217 ~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 217 AVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEeCCEEEEeCCHHHHHh
Confidence 9999999999999998854
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=7.1e-49 Score=403.80 Aligned_cols=221 Identities=33% Similarity=0.480 Sum_probs=196.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|
T Consensus 2 ~L~~~~ls~~y~--------------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~--~G~V 59 (258)
T COG1120 2 MLEVENLSFGYG--------------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK--SGEV 59 (258)
T ss_pred eeEEEEEEEEEC--------------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC--CCEE
Confidence 689999999997 467999999999999999999999999999999999998855 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcC-CCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRL-PRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.++|+++.. +...+.++||||.......+||+|.+.++..-.. ......+++++.+++.|+.+|+.+.+++.+.
T Consensus 60 ~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-- 137 (258)
T COG1120 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-- 137 (258)
T ss_pred EECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc--
Confidence 999999864 3466789999999888888999999999853211 1112234556689999999999999987765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.|||||||||.|||||+++|+||+||||||.||...+.+++++++++++ +|+|||+++||++. +.++||++++|+
T Consensus 138 ---~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk 213 (258)
T COG1120 138 ---ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLK 213 (258)
T ss_pred ---ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEE
Confidence 5999999999999999999999999999999999999999999999995 59999999999975 899999999999
Q ss_pred CCEEEeeCChhhHH
Q 036088 317 NGQAVCSEAPSNLS 330 (737)
Q Consensus 317 ~G~iv~~G~~~~~~ 330 (737)
+|++++.|+|+++.
T Consensus 214 ~G~i~a~G~p~evl 227 (258)
T COG1120 214 DGKIVAQGTPEEVL 227 (258)
T ss_pred CCeEEeecCcchhc
Confidence 99999999998763
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.8e-48 Score=412.93 Aligned_cols=224 Identities=33% Similarity=0.535 Sum_probs=200.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.++++||++.|+. .+.+|+||||++++|+++||+||||||||||+|+|+|+..| .+|+|
T Consensus 4 ~i~~~~l~k~~~~-------------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i 62 (293)
T COG1131 4 VIEVRNLTKKYGG-------------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEI 62 (293)
T ss_pred eeeecceEEEeCC-------------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEE
Confidence 5788999999962 25799999999999999999999999999999999999885 48999
Q ss_pred EECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 162 TLNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 162 ~~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
.++|.+... ...++.+|||+|++.+++.+||+|||.|.+.++... ....+++++++++.+||.+.+++++
T Consensus 63 ~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~----- 134 (293)
T COG1131 63 LVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKV----- 134 (293)
T ss_pred EEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcch-----
Confidence 999998865 456778999999999999999999999999887532 2456789999999999998554444
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-cEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSG-SIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
++||+|||||++||+||+++|++|||||||+||||.++.++++.|++++++| +||+++||+++ ++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCC
Confidence 4799999999999999999999999999999999999999999999999987 89999999986 588999999999999
Q ss_pred EEEeeCChhhHHHHHhh
Q 036088 319 QAVCSEAPSNLSQFFGA 335 (737)
Q Consensus 319 ~iv~~G~~~~~~~~f~~ 335 (737)
++++.|+++++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999988766543
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.1e-48 Score=390.21 Aligned_cols=212 Identities=29% Similarity=0.486 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+++++||++.|..+. ....+|++||++|++||++||+|||||||||||++|.|+..| ++|+|
T Consensus 1 ~i~~~~v~k~y~~~~----------------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v 62 (226)
T COG1136 1 MIELKNVSKIYGLGG----------------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEV 62 (226)
T ss_pred CcEEeeeEEEeccCC----------------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceE
Confidence 367899999997442 125799999999999999999999999999999999999875 49999
Q ss_pred EECCEeCCcc-------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 162 TLNGEVLGSK-------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 162 ~~~G~~~~~~-------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
.++|+++... ..++.+|||||+..|+|++||.||+.+.+.+.. .+....+++++++++.+||.+..+
T Consensus 63 ~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~--- 136 (226)
T COG1136 63 LINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLL--- 136 (226)
T ss_pred EECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhc---
Confidence 9999988642 134568999999999999999999998776542 233356788999999999986654
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
+..+..|||||||||+|||||+.+|+|||.||||.+||+.++..|+++|++++++ |+|||++|||+. +..+|||++
T Consensus 137 -~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i 213 (226)
T COG1136 137 -KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVI 213 (226)
T ss_pred -cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEE
Confidence 1335579999999999999999999999999999999999999999999999876 999999999974 789999999
Q ss_pred EecCCEE
Q 036088 314 FLSNGQA 320 (737)
Q Consensus 314 lL~~G~i 320 (737)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999984
No 17
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-48 Score=395.46 Aligned_cols=220 Identities=27% Similarity=0.504 Sum_probs=192.5
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++|+++.|.. +++|+||||++++|++++|+||||||||||+|+|+|+++|. +|+
T Consensus 3 ~~i~v~nl~v~y~~--------------------~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~--~G~ 60 (254)
T COG1121 3 PMIEVENLTVSYGN--------------------RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS--SGE 60 (254)
T ss_pred cEEEEeeeEEEECC--------------------EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC--cce
Confidence 47999999999962 25999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcccccceEEEEecC---CCCCCCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQD---DLLYSMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~---~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
|.++|++......+.++|||||. |.-|| +||+|.+..+...+.. .....+++++.+++.|+.+|+.+.+|+.+|
T Consensus 61 i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~- 138 (254)
T COG1121 61 IKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG- 138 (254)
T ss_pred EEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-
Confidence 99999988765556789999995 45577 5999999987543321 111234457899999999999999998888
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.|||||+|||-|||||+.+|++|+|||||+|+|+.++..++++|++++++|+||++++||+. .+.++||+|+.|
T Consensus 139 ----~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~L- 212 (254)
T COG1121 139 ----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICL- 212 (254)
T ss_pred ----ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEE-
Confidence 49999999999999999999999999999999999999999999999999999999999997 489999999999
Q ss_pred CCEEEeeCChhhHH
Q 036088 317 NGQAVCSEAPSNLS 330 (737)
Q Consensus 317 ~G~iv~~G~~~~~~ 330 (737)
++++++.|+++++.
T Consensus 213 n~~~~~~G~~~~~~ 226 (254)
T COG1121 213 NRHLIASGPPEEVL 226 (254)
T ss_pred cCeeEeccChhhcc
Confidence 56788999998764
No 18
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-48 Score=416.82 Aligned_cols=233 Identities=29% Similarity=0.446 Sum_probs=206.2
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+++|. ...+|+|+|++|++||+++|+|||||||||||++|+|+..|+ +|+
T Consensus 4 ~~l~i~~v~k~yg--------------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~--~G~ 61 (352)
T COG3842 4 PALEIRNVSKSFG--------------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS--SGE 61 (352)
T ss_pred ceEEEEeeeeecC--------------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--Cce
Confidence 4799999999996 367999999999999999999999999999999999998755 899
Q ss_pred EEECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 161 VTLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 161 I~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
|.++|++++.. ..++.+|+|||+-.|||+|||+||+.|+.+.+ ....+++.+++++++++.++|++.+++. +
T Consensus 62 I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p 134 (352)
T COG3842 62 ILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK-----P 134 (352)
T ss_pred EEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC-----h
Confidence 99999999763 45778999999999999999999999998743 3345677889999999999999887554 5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
.+|||||||||+|||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||.. +.+.++|||.+|++|
T Consensus 135 ~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G 213 (352)
T COG3842 135 HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDG 213 (352)
T ss_pred hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCC
Confidence 579999999999999999999999999999999999999999999999765 999999999976 689999999999999
Q ss_pred EEEeeCChhhHHHHHhhcCCCCCCCCChHHHHH
Q 036088 319 QAVCSEAPSNLSQFFGAFGHRIPENENQAEFAL 351 (737)
Q Consensus 319 ~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 351 (737)
+|...|+|+++-. .|.+.-.|+|+-
T Consensus 214 ~I~Q~gtP~eiY~--------~P~~~fVA~FiG 238 (352)
T COG3842 214 RIEQVGTPEEIYE--------RPATRFVADFIG 238 (352)
T ss_pred ceeecCCHHHHhh--------CcchHHHHHHhC
Confidence 9999999998832 344444555554
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-48 Score=390.99 Aligned_cols=204 Identities=32% Similarity=0.452 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.+++++++++|. ...+|+|||++|.+||+++|+||||||||||||+|+|+.+|. +|+|
T Consensus 3 ~l~i~~v~~~f~--------------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~--~G~V 60 (248)
T COG1116 3 LLEIEGVSKSFG--------------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT--SGEV 60 (248)
T ss_pred eEEEEeeEEEeC--------------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceE
Confidence 689999999996 256999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
.++|+++. .....++||||++.|+|.+||.||+.|+...+. .++++.++++++.|+.+||.+..| ..+++
T Consensus 61 ~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~-----~~P~q 130 (248)
T COG1116 61 LLDGRPVT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFED-----KYPHQ 130 (248)
T ss_pred EECCcccC--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhh-----cCccc
Confidence 99999983 334567999999999999999999999987652 456777789999999999998875 45668
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
|||||||||+|||||+.+|+||+||||+++||+.|+..+.+.|.++.+ .++||+++|||.. |+..++|||++|+++
T Consensus 131 LSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred cChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 999999999999999999999999999999999999999999999865 5899999999986 578899999999984
No 20
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-48 Score=411.93 Aligned_cols=219 Identities=27% Similarity=0.437 Sum_probs=200.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|.. ..+|+|+|++|+.||+++|+||||||||||||+|||+.+++ +|+|
T Consensus 3 ~i~l~~v~K~yg~--------------------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~--~G~I 60 (338)
T COG3839 3 ELELKNVRKSFGS--------------------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT--SGEI 60 (338)
T ss_pred EEEEeeeEEEcCC--------------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceE
Confidence 6899999999962 12999999999999999999999999999999999998754 9999
Q ss_pred EECCEeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGS-KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~-~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
.++|++++. ...++.+++|||+..|||+|||+||+.|+.+.+ ..++++.+++|+++.+.|+|++..|++ ++
T Consensus 61 ~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~ 132 (338)
T COG3839 61 LIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PL 132 (338)
T ss_pred EECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cc
Confidence 999999987 445677999999999999999999999998775 467888999999999999999988665 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
+|||||||||+|||||+++|+++|||||.|+||+..+..+...|+++.++ |.|+|.+|||.. ++..++|||++|++|+
T Consensus 133 ~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~ 211 (338)
T COG3839 133 QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGR 211 (338)
T ss_pred cCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCe
Confidence 79999999999999999999999999999999999999999999999765 899999999975 6899999999999999
Q ss_pred EEeeCChhhHHH
Q 036088 320 AVCSEAPSNLSQ 331 (737)
Q Consensus 320 iv~~G~~~~~~~ 331 (737)
+...|+|.++.+
T Consensus 212 i~Q~g~p~ely~ 223 (338)
T COG3839 212 IQQVGTPLELYE 223 (338)
T ss_pred eeecCChHHHhh
Confidence 999999998843
No 21
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-48 Score=385.32 Aligned_cols=225 Identities=26% Similarity=0.414 Sum_probs=198.3
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||++.|+. ++++|+|||++|++||++||+|||||||||||++|.|+.++ .+|+
T Consensus 2 ~~i~~~nl~k~yp~-------------------~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~--t~G~ 60 (258)
T COG3638 2 MMIEVKNLSKTYPG-------------------GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP--TSGE 60 (258)
T ss_pred ceEEEeeeeeecCC-------------------CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC--Ccce
Confidence 37999999999973 46799999999999999999999999999999999999775 4899
Q ss_pred EEECCEeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC-----CCCcHHHHHHHHHHHHHHcCCccc
Q 036088 161 VTLNGEVLGS------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP-----RSLSKEKKRKRVDALIDQLGLRSA 229 (737)
Q Consensus 161 I~~~G~~~~~------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~ 229 (737)
|++||.++.. ..+|+.+||++|++.|.+.+||.+|+..+..-+.+ -++..++.+.++-+.|+++|+.+.
T Consensus 61 i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~ 140 (258)
T COG3638 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK 140 (258)
T ss_pred EEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH
Confidence 9999988753 24677899999999999999999999987543221 123345567788899999999998
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhh
Q 036088 230 AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSL 308 (737)
Q Consensus 230 ~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~ 308 (737)
+.++.+ .|||||+|||+|||||+.+|+|+|.|||+++|||.++.++|+.|+++++ +|.|||++.|+... +.++
T Consensus 141 A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y 214 (258)
T COG3638 141 AYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKY 214 (258)
T ss_pred HHHHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHH
Confidence 877765 5999999999999999999999999999999999999999999999986 59999999999874 8999
Q ss_pred cceEEEecCCEEEeeCChhhHHHH
Q 036088 309 LDRLIFLSNGQAVCSEAPSNLSQF 332 (737)
Q Consensus 309 ~D~v~lL~~G~iv~~G~~~~~~~~ 332 (737)
||||+-|++|+++|.|+++++.+.
T Consensus 215 ~~Riigl~~G~ivfDg~~~el~~~ 238 (258)
T COG3638 215 ADRIIGLKAGRIVFDGPASELTDE 238 (258)
T ss_pred HhhheEecCCcEEEeCChhhhhHH
Confidence 999999999999999999887543
No 22
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-47 Score=393.14 Aligned_cols=220 Identities=28% Similarity=0.450 Sum_probs=196.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|+++.++ ...+++|||++|+.||++|++|||||||||||++|+|+..|+ +|+|
T Consensus 2 ~i~i~~~~~~~~--------------------~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~--~G~I 59 (345)
T COG1118 2 SIRINNVKKRFG--------------------AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRI 59 (345)
T ss_pred ceeehhhhhhcc--------------------cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC--CceE
Confidence 577888888775 356899999999999999999999999999999999998855 8999
Q ss_pred EECCE---eCCc-ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGE---VLGS-KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~---~~~~-~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.+||+ |.+. ....+.+|||+|+..||++|||.|||.|+.+.+ ....++.+.+.+++++|+.+.|++..+ .
T Consensus 60 ~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~-----r 133 (345)
T COG1118 60 RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLAD-----R 133 (345)
T ss_pred EECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhh-----c
Confidence 99999 5544 234467899999999999999999999998776 233456788899999999999988764 5
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEec
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
++.+|||||||||++||||+.+|++||||||+++||..-+.++.+-|+++.++ |.|++++|||+. +++++||||++|+
T Consensus 134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~ 212 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLN 212 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEec
Confidence 56789999999999999999999999999999999999999999999999876 999999999986 6999999999999
Q ss_pred CCEEEeeCChhhHH
Q 036088 317 NGQAVCSEAPSNLS 330 (737)
Q Consensus 317 ~G~iv~~G~~~~~~ 330 (737)
+|+|...|+++++.
T Consensus 213 ~G~Ieqvg~p~ev~ 226 (345)
T COG1118 213 QGRIEQVGPPDEVY 226 (345)
T ss_pred CCeeeeeCCHHHHh
Confidence 99999999999884
No 23
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-47 Score=371.62 Aligned_cols=221 Identities=31% Similarity=0.445 Sum_probs=203.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|++.+++++|+. ..++++||||+++.||+++|+|||||||||+|++|++++.|+ +|.|
T Consensus 1 Ml~v~~l~K~y~~-------------------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~--~G~v 59 (245)
T COG4555 1 MLEVTDLTKSYGS-------------------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKV 59 (245)
T ss_pred CeeeeehhhhccC-------------------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC--CceE
Confidence 5788999999973 245899999999999999999999999999999999999865 8999
Q ss_pred EECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 162 TLNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 162 ~~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
+++|.+... ...|+.+|.++.+..++..||++|||.|.+++. ++...+.+++++++.+.|+|.+++|+.+|
T Consensus 60 ~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~---- 132 (245)
T COG4555 60 TIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG---- 132 (245)
T ss_pred EEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh----
Confidence 999998753 457888999998889999999999999988875 56778889999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
++|.|+||||+|||||+++|++++|||||||||..+...+.+.++++.++|++||++||.+. ++.++||+|++|++|+
T Consensus 133 -~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Ge 210 (245)
T COG4555 133 -EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGE 210 (245)
T ss_pred -hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCc
Confidence 59999999999999999999999999999999999999999999999989999999999975 6899999999999999
Q ss_pred EEeeCChhhHHHH
Q 036088 320 AVCSEAPSNLSQF 332 (737)
Q Consensus 320 iv~~G~~~~~~~~ 332 (737)
+++.|+.+++...
T Consensus 211 vv~~gs~~~l~~r 223 (245)
T COG4555 211 VVLEGSIEALDAR 223 (245)
T ss_pred EEEcCCHHHHHHH
Confidence 9999999887543
No 24
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.9e-47 Score=364.81 Aligned_cols=214 Identities=28% Similarity=0.467 Sum_probs=193.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+|+||++.|+.+ +++|+||||+|++||++-|+||||||||||||+|.+...|+ +|+|
T Consensus 1 mI~f~~V~k~Y~~g-------------------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt--~G~i 59 (223)
T COG2884 1 MIRFENVSKAYPGG-------------------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT--RGKI 59 (223)
T ss_pred CeeehhhhhhcCCC-------------------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC--CceE
Confidence 58899999999743 66999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLGS------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|++++. ..+|+.+|+|+||..|.++.||.||++|+.+.. +.+..+.++++.++|+.+||.+.++.
T Consensus 60 ~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~--- 133 (223)
T COG2884 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA--- 133 (223)
T ss_pred EECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc---
Confidence 999999864 246888999999999999999999999998765 45778889999999999999987754
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
.+..|||||||||+||||++.+|++|+.||||.+|||..+.+|++++.++.+.|.||++.||+.. .+..+-.|++.|
T Consensus 134 --lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l 210 (223)
T COG2884 134 --LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLAL 210 (223)
T ss_pred --CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999964 466777899999
Q ss_pred cCCEEEeeCC
Q 036088 316 SNGQAVCSEA 325 (737)
Q Consensus 316 ~~G~iv~~G~ 325 (737)
++|+++....
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987643
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=8.4e-46 Score=402.14 Aligned_cols=222 Identities=23% Similarity=0.388 Sum_probs=194.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+.+. +.+.+|+||||++++||+++|+||||||||||+++|+|+.+|+ +|+|
T Consensus 1 mI~~~~lsk~y~~~~----------------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~--~G~I 62 (343)
T TIGR02314 1 MIKLSNITKVFHQGT----------------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--SGSV 62 (343)
T ss_pred CEEEEEEEEEECCCC----------------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEE
Confidence 489999999996321 1246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLGSK------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~~------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|+++... ..++.+|||||+..+++.+||+||+.+..... ..++++.++++.++++.+||.+..|..+
T Consensus 63 ~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~- 138 (343)
T TIGR02314 63 IVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP- 138 (343)
T ss_pred EECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-
Confidence 9999998642 23567999999999999999999999976532 2455667788999999999988776554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+.|||||||||+|||||+.+|++|+||||||+||+.++..+++.|++++++ |.|||++||++. .+.++||++++
T Consensus 139 ----~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~v 213 (343)
T TIGR02314 139 ----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAV 213 (343)
T ss_pred ----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 579999999999999999999999999999999999999999999999875 999999999986 57899999999
Q ss_pred ecCCEEEeeCChhhHH
Q 036088 315 LSNGQAVCSEAPSNLS 330 (737)
Q Consensus 315 L~~G~iv~~G~~~~~~ 330 (737)
|++|++++.|+++++.
T Consensus 214 l~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 214 ISNGELIEQGTVSEIF 229 (343)
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999988763
No 26
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=9.6e-46 Score=397.53 Aligned_cols=220 Identities=28% Similarity=0.430 Sum_probs=196.4
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+ .+.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+
T Consensus 6 ~~i~i~~l~k~~~--------------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~--~G~ 63 (306)
T PRK13537 6 APIDFRNVEKRYG--------------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGS 63 (306)
T ss_pred ceEEEEeEEEEEC--------------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--ceE
Confidence 3799999999995 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 161 VTLNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 161 I~~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
|.++|+++.. ...++.+|||||++.+++.+||+||+.|.+..+ ..+..+..++++++++.++|.+..++.++
T Consensus 64 v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 137 (306)
T PRK13537 64 ISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG--- 137 (306)
T ss_pred EEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh---
Confidence 9999999854 235677999999999999999999999866543 23445556788999999999988877665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
+||||||||++||+||+++|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|
T Consensus 138 --~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G 214 (306)
T PRK13537 138 --ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEG 214 (306)
T ss_pred --hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999878999999999986 588999999999999
Q ss_pred EEEeeCChhhHHH
Q 036088 319 QAVCSEAPSNLSQ 331 (737)
Q Consensus 319 ~iv~~G~~~~~~~ 331 (737)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~l~~ 227 (306)
T PRK13537 215 RKIAEGAPHALIE 227 (306)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998754
No 27
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-46 Score=365.25 Aligned_cols=235 Identities=20% Similarity=0.341 Sum_probs=201.5
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC---CC
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK---QR 156 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~---~~ 156 (737)
...++++||++.|. .+.+|+|||+.|++++++|+||||||||||||+++....+. -.
T Consensus 5 ~~~~~~~~l~~yYg--------------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r 64 (253)
T COG1117 5 IPAIEVRDLNLYYG--------------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64 (253)
T ss_pred cceeEecceeEEEC--------------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCce
Confidence 34689999999996 46799999999999999999999999999999999998663 24
Q ss_pred cceEEEECCEeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-cc
Q 036088 157 LKGTVTLNGEVLGSK-----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-AA 230 (737)
Q Consensus 157 ~~G~I~~~G~~~~~~-----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~ 230 (737)
.+|+|.++|+++... .+|+.+|+|||.+.-|| +|++||+.|+.++.. +..++.++.|+..|+...|.+ ..
T Consensus 65 ~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVK 140 (253)
T COG1117 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVK 140 (253)
T ss_pred EEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhH
Confidence 579999999998643 47888999999999999 799999999987753 333667788999999888853 44
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
|.+ +....+||||||||++|||||+.+|+|||||||||+|||.+..+|-+++.+|++ .-|||++||.+. .+.+..|
T Consensus 141 DrL--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD 216 (253)
T COG1117 141 DRL--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSD 216 (253)
T ss_pred HHh--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhH
Confidence 444 345667999999999999999999999999999999999999999999999985 689999999986 5899999
Q ss_pred eEEEecCCEEEeeCChhhHHHHHhhcCCCCCCCCChHHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQFFGAFGHRIPENENQAEFA 350 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 350 (737)
+..++..|+++++|+.+++. .-|.++...||+
T Consensus 217 ~taFf~~G~LvE~g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 217 YTAFFYLGELVEFGPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred hhhhhcccEEEEEcCHHhhh--------cCccHHHHHHHh
Confidence 99999999999999998872 235555555554
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=402.54 Aligned_cols=219 Identities=23% Similarity=0.398 Sum_probs=194.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+. .+.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|
T Consensus 3 ~l~i~~l~~~~~~-------------------~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~--~G~I 61 (356)
T PRK11650 3 GLKLQAVRKSYDG-------------------KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT--SGEI 61 (356)
T ss_pred EEEEEeEEEEeCC-------------------CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC--ceEE
Confidence 5899999999941 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
.++|+++... ..++.+|||+|++.+|+++||+||+.|+.+.+ ..++.+.+++++++++.+||.+..++.+ +
T Consensus 62 ~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 133 (356)
T PRK11650 62 WIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----R 133 (356)
T ss_pred EECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----h
Confidence 9999998642 23567899999999999999999999986543 2455666788999999999988776554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.|||||||||+|||||+.+|++||||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.+++|++++|++|+
T Consensus 134 ~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 134 ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGV 212 (356)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCE
Confidence 79999999999999999999999999999999999999999999999875 899999999986 5899999999999999
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
++..|+++++.
T Consensus 213 i~~~g~~~~~~ 223 (356)
T PRK11650 213 AEQIGTPVEVY 223 (356)
T ss_pred EEEECCHHHHH
Confidence 99999998873
No 29
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.4e-45 Score=400.86 Aligned_cols=218 Identities=28% Similarity=0.446 Sum_probs=195.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ .+.+|+|+||++++||+++|+|||||||||||++|+|+.+++ +|+|
T Consensus 4 ~l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~--~G~I 61 (353)
T TIGR03265 4 YLSIDNIRKRFG--------------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT--AGTI 61 (353)
T ss_pred EEEEEEEEEEeC--------------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC--ceEE
Confidence 699999999996 245899999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGS-KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~-~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
.++|+++.. ...++.+|||+|+..+||++||+||+.|+...+ ..++.+.+++++++++.+||++..++. ++
T Consensus 62 ~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~ 133 (353)
T TIGR03265 62 YQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PG 133 (353)
T ss_pred EECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hh
Confidence 999999864 234567899999999999999999999986543 345666778999999999999877654 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.|||||||||+|||||+.+|++|||||||++||+.++.++.+.|+++.++ |.|+|++||++. ++.+++|++++|++|+
T Consensus 134 ~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~ 212 (353)
T TIGR03265 134 QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGV 212 (353)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999775 899999999986 5899999999999999
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
++..|+++++.
T Consensus 213 i~~~g~~~~~~ 223 (353)
T TIGR03265 213 IEQVGTPQEIY 223 (353)
T ss_pred EEEEcCHHHHH
Confidence 99999998874
No 30
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-45 Score=379.71 Aligned_cols=217 Identities=29% Similarity=0.464 Sum_probs=188.5
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||+++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|++++. +|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~ 58 (235)
T cd03261 1 IELRGLTKSFG--------------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD--SGEVL 58 (235)
T ss_pred CeEEEEEEEEC--------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEE
Confidence 46899999995 245999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 163 LNGEVLGSK------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 163 ~~G~~~~~~------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
++|+++... ..++.++||+|++.+++.+||+||+.+...... ..+..+..++++++++.+||.+..++.+
T Consensus 59 ~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (235)
T cd03261 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-- 134 (235)
T ss_pred ECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh--
Confidence 999987532 245678999999999999999999998753221 2334455678899999999987665554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEe
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
+.|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. ++.++||++++|
T Consensus 135 ---~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l 210 (235)
T cd03261 135 ---AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVL 210 (235)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEE
Confidence 469999999999999999999999999999999999999999999999874 899999999986 578899999999
Q ss_pred cCCEEEeeCChhhH
Q 036088 316 SNGQAVCSEAPSNL 329 (737)
Q Consensus 316 ~~G~iv~~G~~~~~ 329 (737)
++|++++.|+++++
T Consensus 211 ~~G~i~~~g~~~~~ 224 (235)
T cd03261 211 YDGKIVAEGTPEEL 224 (235)
T ss_pred ECCeEEEecCHHHH
Confidence 99999999988765
No 31
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-45 Score=398.73 Aligned_cols=218 Identities=21% Similarity=0.422 Sum_probs=195.5
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+++ +|+|
T Consensus 6 ~l~~~~l~~~~~--------------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I 63 (351)
T PRK11432 6 FVVLKNITKRFG--------------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT--EGQI 63 (351)
T ss_pred EEEEEeEEEEEC--------------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC--ceEE
Confidence 799999999995 245899999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
.++|+++... ..++.+|||+|+..+|+++||+||+.|+.+.+ ..++.+.+++++++++.+||.+..++. ++
T Consensus 64 ~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~ 135 (351)
T PRK11432 64 FIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY-----VD 135 (351)
T ss_pred EECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 9999998643 23467899999999999999999999987543 245566778999999999998877554 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|+|++||++. ++.+++|+|++|++|+
T Consensus 136 ~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~ 214 (351)
T PRK11432 136 QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGK 214 (351)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999765 899999999986 5889999999999999
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
++..|+++++.
T Consensus 215 i~~~g~~~~~~ 225 (351)
T PRK11432 215 IMQIGSPQELY 225 (351)
T ss_pred EEEEcCHHHHH
Confidence 99999998873
No 32
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-46 Score=420.25 Aligned_cols=226 Identities=23% Similarity=0.416 Sum_probs=198.6
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
...|+|+||+|.|+.+. ..+||+|+||+|+|||++||+||||+||||+.++|..+++|. +|
T Consensus 463 ~G~IeF~~VsFaYP~Rp-----------------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt--sG 523 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRP-----------------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT--SG 523 (716)
T ss_pred cceEEEEEeeeecCCCC-----------------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--CC
Confidence 34799999999998653 467999999999999999999999999999999999998855 99
Q ss_pred EEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 160 TVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 160 ~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
+|.+||+|+.+ ..+|+.+|+|.|+|.||.. ||+|||.|+..-...+++..+.+.+.+++.+..+ ++..||.||+
T Consensus 524 ~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~--p~gY~T~VGE 600 (716)
T KOG0058|consen 524 RILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNF--PDGYNTVVGE 600 (716)
T ss_pred eEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--ccccccccCC
Confidence 99999999865 4578899999999999998 9999999997632222233344566778888765 7779999985
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
++..||||||||++|||||++||+||||||.||+||++++..|.+.|.++.+ ++|||++.|+.+ ..+.+|+|++++
T Consensus 601 -kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 601 -KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVID 676 (716)
T ss_pred -ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEc
Confidence 5567999999999999999999999999999999999999999999999876 699999999987 489999999999
Q ss_pred CCEEEeeCChhhHHH
Q 036088 317 NGQAVCSEAPSNLSQ 331 (737)
Q Consensus 317 ~G~iv~~G~~~~~~~ 331 (737)
+|++++.|+++|+.+
T Consensus 677 ~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 677 KGRVVEMGTHDELLS 691 (716)
T ss_pred CCeEEecccHHHHhh
Confidence 999999999998864
No 33
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-45 Score=376.89 Aligned_cols=219 Identities=27% Similarity=0.460 Sum_probs=196.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+++++|++|+|+.+ +.+|+|+|+++++|+.++|+||||||||||+++|+|+++|. +|+|
T Consensus 3 ~i~~~~l~~~y~~~-------------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~--~G~v 61 (235)
T COG1122 3 MIEAENLSFRYPGR-------------------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT--SGEV 61 (235)
T ss_pred eEEEEEEEEEcCCC-------------------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC--CCEE
Confidence 68999999999732 46999999999999999999999999999999999999855 8999
Q ss_pred EECCEeCC----cccccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLG----SKLLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~----~~~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|.++. ....++.+|||+|++ .++. -||.|.++|+.... .++.++.++++++.++.+|+.+.++.
T Consensus 62 ~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r--- 134 (235)
T COG1122 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR--- 134 (235)
T ss_pred EECCeeccchhhHHHhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC---
Confidence 99999976 345788899999996 4555 59999999997653 46677789999999999999988754
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
.+..|||||||||+||.+|+.+|++|+|||||||||+..+.++++.+++|.++ |+|+|++|||.. .+.+++|++++
T Consensus 135 --~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~v 211 (235)
T COG1122 135 --PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVV 211 (235)
T ss_pred --CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEE
Confidence 45579999999999999999999999999999999999999999999999987 689999999986 58999999999
Q ss_pred ecCCEEEeeCChhhHHH
Q 036088 315 LSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 315 L~~G~iv~~G~~~~~~~ 331 (737)
|++|+++++|++.++.+
T Consensus 212 l~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 212 LDDGKILADGDPAEIFN 228 (235)
T ss_pred EECCEEeecCCHHHHhh
Confidence 99999999999877643
No 34
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.8e-45 Score=398.63 Aligned_cols=218 Identities=27% Similarity=0.413 Sum_probs=195.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcc--e
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLK--G 159 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~--G 159 (737)
.|+++||+++|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+++ + |
T Consensus 5 ~l~~~~l~~~~~--------------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~~~G 62 (362)
T TIGR03258 5 GIRIDHLRVAYG--------------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA--GLTG 62 (362)
T ss_pred EEEEEEEEEEEC--------------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCCE
Confidence 589999999995 245999999999999999999999999999999999998755 7 9
Q ss_pred EEEECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 160 TVTLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 160 ~I~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
+|.++|+++... ..++.+|||+|+..+|+++||+||+.|+...+ ..++.+.+++++++++.+||++..++.+
T Consensus 63 ~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~---- 135 (362)
T TIGR03258 63 RIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP---- 135 (362)
T ss_pred EEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh----
Confidence 999999998542 23567899999999999999999999987543 2455666788999999999998776655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CcEEEEEecCCcHHHHhhcceEEEec
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS--GSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
+.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++||++. ++.+++|+|++|+
T Consensus 136 -~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~ 213 (362)
T TIGR03258 136 -AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMK 213 (362)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 479999999999999999999999999999999999999999999999876 799999999986 5889999999999
Q ss_pred CCEEEeeCChhhHH
Q 036088 317 NGQAVCSEAPSNLS 330 (737)
Q Consensus 317 ~G~iv~~G~~~~~~ 330 (737)
+|+++..|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 214 DGRLAAHGEPQALY 227 (362)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999998874
No 35
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-45 Score=351.75 Aligned_cols=216 Identities=26% Similarity=0.447 Sum_probs=188.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|.+++|.++|.. .=-..+++|++||++||+||||||||||||+|+|+..|. +|+|
T Consensus 1 ~l~L~~V~~~y~~----------------------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~--~G~i 56 (231)
T COG3840 1 MLALDDVRFSYGH----------------------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEI 56 (231)
T ss_pred CccccceEEeeCc----------------------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC--CceE
Confidence 3567889999863 224678889999999999999999999999999998755 8999
Q ss_pred EECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
.+||++.+.. ...+-++++||+..||.+|||++|+.++..-. -.-.++.+++++.++.++||..+.+++.+
T Consensus 57 ~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~---LkL~a~~r~~v~~aa~~vGl~~~~~RLP~----- 128 (231)
T COG3840 57 LINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG---LKLNAEQREKVEAAAAQVGLAGFLKRLPG----- 128 (231)
T ss_pred EEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc---cccCHHHHHHHHHHHHHhChhhHhhhCcc-----
Confidence 9999998653 45667899999999999999999999875321 11235667889999999999998866554
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
+|||||||||++||+|+++-+||+||||+|.|||.-+.++..++.++++ ++.|++++||+|+ ++.+++|+++++++|+
T Consensus 129 ~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gr 207 (231)
T COG3840 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGR 207 (231)
T ss_pred ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCE
Confidence 6999999999999999999999999999999999999999999999986 4899999999997 5899999999999999
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
|.+.|+.++..
T Consensus 208 i~~~g~~~~~~ 218 (231)
T COG3840 208 IAAQGSTQELL 218 (231)
T ss_pred EEeeccHHHHh
Confidence 99999988763
No 36
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.3e-44 Score=393.20 Aligned_cols=221 Identities=26% Similarity=0.410 Sum_probs=196.1
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
..+|+++||+++|+ .+.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|
T Consensus 39 ~~~i~i~nl~k~y~--------------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~--~G 96 (340)
T PRK13536 39 TVAIDLAGVSKSYG--------------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AG 96 (340)
T ss_pred ceeEEEEEEEEEEC--------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--ce
Confidence 34799999999996 246999999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 160 TVTLNGEVLGSK--LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 160 ~I~~~G~~~~~~--~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
+|.++|+++... ..++.+||+||++.+++.+||.||+.+..... ..+..+..++++++++.+||.+..++.++
T Consensus 97 ~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-- 171 (340)
T PRK13536 97 KITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-- 171 (340)
T ss_pred EEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh--
Confidence 999999997532 34667999999999999999999999765443 22344456678899999999988777665
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
+||||||||++||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++.++||+|++|++
T Consensus 172 ---~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~ 247 (340)
T PRK13536 172 ---DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA 247 (340)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999999888999999999986 58899999999999
Q ss_pred CEEEeeCChhhHHH
Q 036088 318 GQAVCSEAPSNLSQ 331 (737)
Q Consensus 318 G~iv~~G~~~~~~~ 331 (737)
|++++.|+++++..
T Consensus 248 G~i~~~g~~~~l~~ 261 (340)
T PRK13536 248 GRKIAEGRPHALID 261 (340)
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999998854
No 37
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.3e-44 Score=397.40 Aligned_cols=220 Identities=24% Similarity=0.386 Sum_probs=195.5
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
+.+|+++||+++|+ .+.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|
T Consensus 12 ~~~L~l~~l~~~~~--------------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~--~G 69 (375)
T PRK09452 12 SPLVELRGISKSFD--------------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD--SG 69 (375)
T ss_pred CceEEEEEEEEEEC--------------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ce
Confidence 34699999999995 245999999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 160 TVTLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 160 ~I~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
+|.++|+++... ..++.+|||+|++.+||++||+||+.|+...+ ..++.+.+++++++++.+||.+..++.+
T Consensus 70 ~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p---- 142 (375)
T PRK09452 70 RIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP---- 142 (375)
T ss_pred EEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh----
Confidence 999999998642 24567899999999999999999999986533 2455566778999999999998776554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++.+++|+|++|++
T Consensus 143 -~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~ 220 (375)
T PRK09452 143 -HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD 220 (375)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 479999999999999999999999999999999999999999999999875 899999999986 58999999999999
Q ss_pred CEEEeeCChhhHH
Q 036088 318 GQAVCSEAPSNLS 330 (737)
Q Consensus 318 G~iv~~G~~~~~~ 330 (737)
|+++..|+++++.
T Consensus 221 G~i~~~g~~~~i~ 233 (375)
T PRK09452 221 GRIEQDGTPREIY 233 (375)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998873
No 38
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=394.88 Aligned_cols=221 Identities=24% Similarity=0.383 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||++.|. .+.+|+|+||++++||+++|+|||||||||||++|+|+.+++ +|+|
T Consensus 2 ~L~i~~l~~~~~--------------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I 59 (353)
T PRK10851 2 SIEIANIKKSFG--------------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT--SGHI 59 (353)
T ss_pred EEEEEEEEEEeC--------------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEE
Confidence 589999999995 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 162 TLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 162 ~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
+++|+++... ..++.++||+|++.+++++||+||+.|+...... ...++++.+++++++++.++|.+..++.+
T Consensus 60 ~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~----- 134 (353)
T PRK10851 60 RFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP----- 134 (353)
T ss_pred EECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----
Confidence 9999998542 2345789999999999999999999998653211 12345566788999999999987776554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++.++||+|++|++|
T Consensus 135 ~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G 213 (353)
T PRK10851 135 AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQG 213 (353)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999876 899999999986 589999999999999
Q ss_pred EEEeeCChhhHH
Q 036088 319 QAVCSEAPSNLS 330 (737)
Q Consensus 319 ~iv~~G~~~~~~ 330 (737)
++++.|+++++.
T Consensus 214 ~i~~~g~~~~i~ 225 (353)
T PRK10851 214 NIEQAGTPDQVW 225 (353)
T ss_pred EEEEEcCHHHHH
Confidence 999999998874
No 39
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-45 Score=364.17 Aligned_cols=222 Identities=32% Similarity=0.442 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+.+.. ..++|+||||++.+||.++|+|+||||||||.++|+|+.++. +|+|
T Consensus 3 ~l~v~nl~~~y~~~~~----------------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~--~G~I 64 (252)
T COG1124 3 LLSVRNLSIVYGGGKF----------------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS--SGSI 64 (252)
T ss_pred eEEEeceEEEecCCcc----------------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC--CceE
Confidence 7999999999985421 236999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc----cccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLGSK----LLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~~----~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|++.... .+++.+.+||||+ .+.|..||++.|.-+... .+.++. ++++.++++.+||.+..-
T Consensus 65 ~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l---- 135 (252)
T COG1124 65 LLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFL---- 135 (252)
T ss_pred EECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHH----
Confidence 9999887653 3566789999997 588999999999876543 233333 344999999999975432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
++.+.+||||||||++|||||..+|++||||||||+||+..+.+|+++|.++.++ +.|.|+++||.. .+..+||||++
T Consensus 136 ~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~V 214 (252)
T COG1124 136 DRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAV 214 (252)
T ss_pred hcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheee
Confidence 3456789999999999999999999999999999999999999999999999875 789999999986 58899999999
Q ss_pred ecCCEEEeeCChhhHHH
Q 036088 315 LSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 315 L~~G~iv~~G~~~~~~~ 331 (737)
|++|++++.++.+++..
T Consensus 215 m~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 215 MDNGQIVEIGPTEELLS 231 (252)
T ss_pred eeCCeEEEeechhhhhc
Confidence 99999999999988754
No 40
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.4e-44 Score=369.56 Aligned_cols=210 Identities=27% Similarity=0.468 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++|+.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 1 ~l~~~~l~~~~~~~------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i 60 (216)
T TIGR00960 1 MIRFEQVSKAYPGG------------------HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT--RGKI 60 (216)
T ss_pred CeEEEEEEEEecCC------------------CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEE
Confidence 47899999999521 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLGSK------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~~------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|+++... ..++.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.+||.+..++.+
T Consensus 61 ~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 136 (216)
T TIGR00960 61 RFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP- 136 (216)
T ss_pred EECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-
Confidence 9999987431 24567899999999999999999999875432 1233445678899999999987766554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|
T Consensus 137 ----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l 211 (216)
T TIGR00960 137 ----MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTL 211 (216)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999999877999999999986 477899999999
Q ss_pred cCCEE
Q 036088 316 SNGQA 320 (737)
Q Consensus 316 ~~G~i 320 (737)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
No 41
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.9e-44 Score=385.94 Aligned_cols=220 Identities=28% Similarity=0.445 Sum_probs=192.9
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+ .+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+
T Consensus 3 ~~i~~~~l~~~~~--------------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~ 60 (303)
T TIGR01288 3 VAIDLVGVSKSYG--------------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGK 60 (303)
T ss_pred cEEEEEeEEEEeC--------------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceE
Confidence 3699999999995 245999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 161 VTLNGEVLGSK--LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 161 I~~~G~~~~~~--~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
|.++|+++... ..++.+||++|++.+++.+||+||+.+..... ..+..+..++++++++.++|.+..++.++
T Consensus 61 i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~--- 134 (303)
T TIGR01288 61 ITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA--- 134 (303)
T ss_pred EEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh---
Confidence 99999987432 24567899999999999999999998754432 23344445678899999999887766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|
T Consensus 135 --~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G 211 (303)
T TIGR01288 135 --LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESG 211 (303)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999888999999999986 588899999999999
Q ss_pred EEEeeCChhhHHH
Q 036088 319 QAVCSEAPSNLSQ 331 (737)
Q Consensus 319 ~iv~~G~~~~~~~ 331 (737)
++++.|+++++..
T Consensus 212 ~i~~~g~~~~~~~ 224 (303)
T TIGR01288 212 RKIAEGRPHALID 224 (303)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999988754
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-44 Score=368.96 Aligned_cols=216 Identities=27% Similarity=0.429 Sum_probs=187.8
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.
T Consensus 1 i~~~~~~~~~~--------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~ 58 (220)
T cd03265 1 IEVENLVKKYG--------------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT--SGRAT 58 (220)
T ss_pred CEEEEEEEEEC--------------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEE
Confidence 47899999985 246999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 163 LNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 163 ~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
++|.++.. ...++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.++
T Consensus 59 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 130 (220)
T cd03265 59 VAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVK----- 130 (220)
T ss_pred ECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----
Confidence 99998753 233556899999999999999999999875432 22334456678999999999877666554
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCE
Confidence 69999999999999999999999999999999999999999999999876 899999999986 5788999999999999
Q ss_pred EEeeCChhhH
Q 036088 320 AVCSEAPSNL 329 (737)
Q Consensus 320 iv~~G~~~~~ 329 (737)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9998887653
No 43
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-44 Score=367.58 Aligned_cols=211 Identities=31% Similarity=0.478 Sum_probs=182.9
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~ 58 (213)
T cd03259 1 LELKGLSKTYG--------------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD--SGEIL 58 (213)
T ss_pred CeeeeeEEEeC--------------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEE
Confidence 46889999985 246999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 163 LNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 163 ~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
++|+++... ..++.++||+|++.+++.+||+||+.+..... .......+++++++++.+|+.+..++.+ ..
T Consensus 59 ~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (213)
T cd03259 59 IDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HE 130 (213)
T ss_pred ECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 999987532 23456899999999999999999998875432 1234445567899999999987766555 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
||||||||++|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. ++.++||++++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999864 899999999986 57889999999999999
Q ss_pred EeeC
Q 036088 321 VCSE 324 (737)
Q Consensus 321 v~~G 324 (737)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
No 44
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-44 Score=393.66 Aligned_cols=220 Identities=27% Similarity=0.420 Sum_probs=195.3
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
..+|+++|+++.|. .+.+|+|+||++++||+++|+|||||||||||++|+|+.+++ +|
T Consensus 17 ~~~l~l~~v~~~~~--------------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G 74 (377)
T PRK11607 17 TPLLEIRNLTKSFD--------------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT--AG 74 (377)
T ss_pred CceEEEEeEEEEEC--------------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ce
Confidence 34799999999995 245999999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 160 TVTLNGEVLGS-KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 160 ~I~~~G~~~~~-~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
+|.++|+++.. ...++.+|||+|++.+|+++||.||+.|+.+.+ ..++.+.+++++++++.+||.+..++.
T Consensus 75 ~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~----- 146 (377)
T PRK11607 75 QIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK----- 146 (377)
T ss_pred EEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----
Confidence 99999999854 234667999999999999999999999986543 235566678899999999998776554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
+.+|||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++
T Consensus 147 ~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~ 225 (377)
T PRK11607 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR 225 (377)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC
Confidence 4579999999999999999999999999999999999999999999998764 899999999986 58999999999999
Q ss_pred CEEEeeCChhhHH
Q 036088 318 GQAVCSEAPSNLS 330 (737)
Q Consensus 318 G~iv~~G~~~~~~ 330 (737)
|+++..|+++++.
T Consensus 226 G~i~~~g~~~~~~ 238 (377)
T PRK11607 226 GKFVQIGEPEEIY 238 (377)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
No 45
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-44 Score=391.14 Aligned_cols=222 Identities=25% Similarity=0.385 Sum_probs=192.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+.+. ..+.+|+|+||++++||+++|+||||||||||+|+|+|+++|. +|+|
T Consensus 1 mi~i~~l~~~y~~~~----------------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~--~G~I 62 (343)
T PRK11153 1 MIELKNISKVFPQGG----------------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT--SGRV 62 (343)
T ss_pred CEEEEeEEEEeCCCC----------------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEE
Confidence 488999999996211 1256999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLGSK------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~~------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|+++... ..++.+|||+|++.+++.+||+||+.+..... ..+..+.+++++++++.+||.+..++.+
T Consensus 63 ~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~- 138 (343)
T PRK11153 63 LVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP- 138 (343)
T ss_pred EECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-
Confidence 9999988532 23567899999999999999999999876543 2344555678999999999987766554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+.|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||++++
T Consensus 139 ----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~ 213 (343)
T PRK11153 139 ----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAV 213 (343)
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999999765 899999999986 57889999999
Q ss_pred ecCCEEEeeCChhhHH
Q 036088 315 LSNGQAVCSEAPSNLS 330 (737)
Q Consensus 315 L~~G~iv~~G~~~~~~ 330 (737)
|++|++++.|+++++.
T Consensus 214 l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 214 IDAGRLVEQGTVSEVF 229 (343)
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999988764
No 46
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-44 Score=393.77 Aligned_cols=218 Identities=25% Similarity=0.418 Sum_probs=192.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+++|+ .+.+|+|+||++++||+++|+|||||||||||++|+|+++++ +|+|
T Consensus 3 ~l~i~~l~~~~~--------------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~--~G~I 60 (369)
T PRK11000 3 SVTLRNVTKAYG--------------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT--SGDL 60 (369)
T ss_pred EEEEEEEEEEeC--------------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEE
Confidence 589999999995 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
.++|+++... ..++.++||+|+..+++++||+||+.|+...+ ..+..+.+++++++++.+||.+..++.+ .
T Consensus 61 ~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~ 132 (369)
T PRK11000 61 FIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----K 132 (369)
T ss_pred EECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----h
Confidence 9999998542 23456899999999999999999999986543 2344556678999999999987776554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++.++||++++|++|+
T Consensus 133 ~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~ 211 (369)
T PRK11000 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 211 (369)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999765 899999999986 5889999999999999
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
++..|+++++.
T Consensus 212 i~~~g~~~~i~ 222 (369)
T PRK11000 212 VAQVGKPLELY 222 (369)
T ss_pred EEEEcCHHHHH
Confidence 99999998774
No 47
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.6e-44 Score=371.45 Aligned_cols=219 Identities=27% Similarity=0.464 Sum_probs=187.7
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||++.|+ .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~ 58 (236)
T cd03219 1 LEVRGLTKRFG--------------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT--SGSVL 58 (236)
T ss_pred CeeeeeEEEEC--------------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CceEE
Confidence 46889999985 245999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCC-------CcHHHHHHHHHHHHHHcCCccccc
Q 036088 163 LNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRS-------LSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 163 ~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
++|+++.... .+..++|++|++.+++.+||+||+.+......... ....+..++++++++.+|+.+..+
T Consensus 59 ~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 138 (236)
T cd03219 59 FDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLAD 138 (236)
T ss_pred ECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhh
Confidence 9999875421 23458999999999999999999998754321110 013344567899999999987665
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
+.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+
T Consensus 139 ~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~ 212 (236)
T cd03219 139 RPA-----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADR 212 (236)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 554 469999999999999999999999999999999999999999999999878999999999986 57889999
Q ss_pred EEEecCCEEEeeCChhhH
Q 036088 312 LIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~ 329 (737)
+++|++|++++.|+++++
T Consensus 213 i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 213 VTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred EEEEeCCEEEeecCHHHh
Confidence 999999999999988765
No 48
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-44 Score=370.83 Aligned_cols=220 Identities=25% Similarity=0.393 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|
T Consensus 2 ~l~~~~l~~~~~--------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i 59 (239)
T cd03296 2 SIEVRNVSKRFG--------------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTI 59 (239)
T ss_pred EEEEEeEEEEEC--------------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEE
Confidence 589999999995 24599999999999999999999999999999999999875 48999
Q ss_pred EECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 162 TLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 162 ~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
.++|+++... ..++.++||+|++.+++.+||+||+.+....... ......+..++++++++.+||.+..++.+
T Consensus 60 ~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 134 (239)
T cd03296 60 LFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP----- 134 (239)
T ss_pred EECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----
Confidence 9999987532 2245689999999999989999999987543211 00123344567889999999987665554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|
T Consensus 135 ~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G 213 (239)
T cd03296 135 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKG 213 (239)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999999875 899999999986 478899999999999
Q ss_pred EEEeeCChhhH
Q 036088 319 QAVCSEAPSNL 329 (737)
Q Consensus 319 ~iv~~G~~~~~ 329 (737)
++++.|+++++
T Consensus 214 ~i~~~~~~~~~ 224 (239)
T cd03296 214 RIEQVGTPDEV 224 (239)
T ss_pred eEEEecCHHHH
Confidence 99999988765
No 49
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.6e-45 Score=424.87 Aligned_cols=229 Identities=29% Similarity=0.432 Sum_probs=198.3
Q ss_pred CCCCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 036088 77 PNYPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR 156 (737)
Q Consensus 77 ~~~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~ 156 (737)
+.....++++||+|+|... ...+|+|+|++|++||.+||+|+||||||||+|+|+|+++|.
T Consensus 466 ~~~~g~I~~~nvsf~y~~~------------------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~- 526 (709)
T COG2274 466 PKLQGEIEFENVSFRYGPD------------------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ- 526 (709)
T ss_pred cccCceEEEEEEEEEeCCC------------------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-
Confidence 3445689999999999743 246999999999999999999999999999999999998854
Q ss_pred cceEEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 157 LKGTVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 157 ~~G~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
+|+|++||.|++. ...|+.+|||+||+.+|.. ||+||+.++......+++-++.+.+.+++.+..+ +...||.
T Consensus 527 -~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~l--P~gy~t~ 602 (709)
T COG2274 527 -QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENL--PMGYDTP 602 (709)
T ss_pred -CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhc--ccccccc
Confidence 8999999999864 4688999999999999998 9999999976533222233334455677777766 4558899
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
+| +.+.+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|.++.+ |+|+|+++|+++ ..+.||||+
T Consensus 603 v~-E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIi 678 (709)
T COG2274 603 VG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRII 678 (709)
T ss_pred cc-cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEE
Confidence 98 56778999999999999999999999999999999999999999999999975 799999999986 589999999
Q ss_pred EecCCEEEeeCChhhHHHH
Q 036088 314 FLSNGQAVCSEAPSNLSQF 332 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~~~ 332 (737)
+|++|+++.+|+++++.+.
T Consensus 679 Vl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 679 VLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred EccCCceeccCCHHHHHHh
Confidence 9999999999999998764
No 50
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.5e-44 Score=369.75 Aligned_cols=216 Identities=27% Similarity=0.501 Sum_probs=187.6
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||++.|+ .+.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~ 58 (232)
T cd03218 1 LRAENLSKRYG--------------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD--SGKIL 58 (232)
T ss_pred CeEEEEEEEeC--------------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEE
Confidence 46899999985 246999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 163 LNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 163 ~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
++|+++.... .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++.+
T Consensus 59 ~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 131 (232)
T cd03218 59 LDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA---- 131 (232)
T ss_pred ECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 9999875321 2346899999999999999999999865432 1233445567899999999987665554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|
T Consensus 132 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G 209 (232)
T cd03218 132 -SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEG 209 (232)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999999877999999999986 588999999999999
Q ss_pred EEEeeCChhhH
Q 036088 319 QAVCSEAPSNL 329 (737)
Q Consensus 319 ~iv~~G~~~~~ 329 (737)
++++.|+++++
T Consensus 210 ~i~~~~~~~~~ 220 (232)
T cd03218 210 KVLAEGTPEEI 220 (232)
T ss_pred eEEEEeCHHHh
Confidence 99999987765
No 51
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-44 Score=379.32 Aligned_cols=234 Identities=26% Similarity=0.429 Sum_probs=195.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+... ...+.+|+|||++|++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 1 mi~~~~v~~~y~~~~---------------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i 63 (288)
T PRK13643 1 MIKFEKVNYTYQPNS---------------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT--EGKV 63 (288)
T ss_pred CEEEEEEEEEeCCCC---------------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC--CcEE
Confidence 489999999996321 01245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc-------ccccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccc
Q 036088 162 TLNGEVLGS-------KLLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAM 231 (737)
Q Consensus 162 ~~~G~~~~~-------~~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 231 (737)
+++|+++.. ...++.+|||+|++ .+++ .||.||+.|+.... ..+..+.++++.++++.+||. +..+
T Consensus 64 ~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 139 (288)
T PRK13643 64 TVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWE 139 (288)
T ss_pred EECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhcc
Confidence 999999742 13456789999986 5666 59999999876432 234556677899999999996 3444
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
+ .++.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+
T Consensus 140 ~-----~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dr 213 (288)
T PRK13643 140 K-----SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADY 213 (288)
T ss_pred C-----CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 3 34579999999999999999999999999999999999999999999999877999999999986 57789999
Q ss_pred EEEecCCEEEeeCChhhHHH---HHhhcCCCCCC
Q 036088 312 LIFLSNGQAVCSEAPSNLSQ---FFGAFGHRIPE 342 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~p~ 342 (737)
|++|++|++++.|+++++.. .+...|..+|.
T Consensus 214 i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 214 VYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred EEEEECCEEEEECCHHHHHcCHHHHHHcCCCCCh
Confidence 99999999999999988632 33445555543
No 52
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-44 Score=368.92 Aligned_cols=221 Identities=25% Similarity=0.377 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|+++.|+... +.+++|+|+||++++||+++|+||||||||||+++|+|++++ .+|+|
T Consensus 1 ~i~~~~l~~~~~~~~----------------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i 62 (233)
T cd03258 1 MIELKNVSKVFGDTG----------------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSV 62 (233)
T ss_pred CeEEecceEEccCCC----------------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceE
Confidence 478999999996210 013699999999999999999999999999999999999875 48999
Q ss_pred EECCEeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLGSK------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~~------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|+++... ..++.++|++|++.+++.+||+||+.+....+ ........+.++++++.+||.+..++.+
T Consensus 63 ~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 138 (233)
T cd03258 63 LVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP- 138 (233)
T ss_pred EECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-
Confidence 9999987532 13566899999999999999999998875432 1234445667899999999987665544
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~ 213 (233)
T cd03258 139 ----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAV 213 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999999875 899999999986 57889999999
Q ss_pred ecCCEEEeeCChhhH
Q 036088 315 LSNGQAVCSEAPSNL 329 (737)
Q Consensus 315 L~~G~iv~~G~~~~~ 329 (737)
|++|++++.|+++++
T Consensus 214 l~~G~i~~~~~~~~~ 228 (233)
T cd03258 214 MEKGEVVEEGTVEEV 228 (233)
T ss_pred EECCEEEEecCHHHH
Confidence 999999999987765
No 53
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=7.1e-44 Score=364.87 Aligned_cols=216 Identities=28% Similarity=0.456 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|+++.|+... +..++|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|
T Consensus 1 ~l~~~~v~~~~~~~~----------------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i 62 (218)
T cd03266 1 MITADALTKRFRDVK----------------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFA 62 (218)
T ss_pred CeEEEEEEEecCCCC----------------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--CceE
Confidence 478999999996310 1126999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 162 TLNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 162 ~~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
.++|+++.. ...++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++.++
T Consensus 63 ~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 135 (218)
T cd03266 63 TVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG---- 135 (218)
T ss_pred EECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhh----
Confidence 999998753 234567899999999999999999998865432 23344556788999999999877766554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|+
T Consensus 136 -~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 213 (218)
T cd03266 136 -GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGR 213 (218)
T ss_pred -hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999877999999999986 5788999999999999
Q ss_pred EEeeC
Q 036088 320 AVCSE 324 (737)
Q Consensus 320 iv~~G 324 (737)
+++.|
T Consensus 214 i~~~~ 218 (218)
T cd03266 214 VVYEG 218 (218)
T ss_pred EeecC
Confidence 98754
No 54
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-44 Score=363.03 Aligned_cols=210 Identities=33% Similarity=0.516 Sum_probs=183.4
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|+ ++.+|+|+||++++||+++|+|||||||||||++|+|+.++ .+|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~ 58 (210)
T cd03269 1 LEVENVTKRFG--------------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVL 58 (210)
T ss_pred CEEEEEEEEEC--------------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEE
Confidence 46899999985 24599999999999999999999999999999999999875 489999
Q ss_pred ECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 036088 163 LNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGV 242 (737)
Q Consensus 163 ~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 242 (737)
++|+++.. ..++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++.+ +.|
T Consensus 59 ~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 129 (210)
T cd03269 59 FDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EEL 129 (210)
T ss_pred ECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhC
Confidence 99998754 34567899999999999999999998865443 2233445678899999999987666554 469
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEe
Q 036088 243 SGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVC 322 (737)
Q Consensus 243 SGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 322 (737)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEe
Confidence 999999999999999999999999999999999999999999999877899999999986 4778999999999999987
Q ss_pred eC
Q 036088 323 SE 324 (737)
Q Consensus 323 ~G 324 (737)
.|
T Consensus 209 ~~ 210 (210)
T cd03269 209 YG 210 (210)
T ss_pred cC
Confidence 54
No 55
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=9.5e-44 Score=362.61 Aligned_cols=211 Identities=26% Similarity=0.437 Sum_probs=183.4
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.
T Consensus 1 i~~~~l~~~~~--------------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~v~ 58 (213)
T cd03301 1 VELENVTKRFG--------------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT--SGRIY 58 (213)
T ss_pred CEEEeeEEEEC--------------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEE
Confidence 46899999985 245999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 163 LNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 163 ~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
++|+++... ..++.++|++|++.+++.+||+||+.+..... .....+.+++++++++.+|+.+..++.+ +.
T Consensus 59 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (213)
T cd03301 59 IGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQ 130 (213)
T ss_pred ECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hh
Confidence 999987532 23456899999999999899999998875432 2334455667899999999987766555 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874 899999999986 57889999999999999
Q ss_pred EeeC
Q 036088 321 VCSE 324 (737)
Q Consensus 321 v~~G 324 (737)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
No 56
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-43 Score=364.38 Aligned_cols=215 Identities=31% Similarity=0.461 Sum_probs=184.5
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|+... ..+.+|+|+||+|++||+++|+||||||||||+++|+|+.++ .+|+|.
T Consensus 1 l~~~~l~~~~~~~~----------------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~ 62 (220)
T cd03293 1 LEVRNVSKTYGGGG----------------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVL 62 (220)
T ss_pred CeEEEEEEEcCCCC----------------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEE
Confidence 46899999996310 125699999999999999999999999999999999999875 489999
Q ss_pred ECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 036088 163 LNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGV 242 (737)
Q Consensus 163 ~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 242 (737)
++|+++.. .++.++||+|++.+++.+||+||+.+....+ ........++++++++.+||.+..++.+ ..|
T Consensus 63 ~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 63 VDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred ECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99998753 3567899999999999899999999875432 1233445678899999999987665554 469
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEec--CCE
Q 036088 243 SGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLS--NGQ 319 (737)
Q Consensus 243 SGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~--~G~ 319 (737)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.++||++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCE
Confidence 99999999999999999999999999999999999999999999965 4899999999986 4788999999999 799
Q ss_pred EEeeCCh
Q 036088 320 AVCSEAP 326 (737)
Q Consensus 320 iv~~G~~ 326 (737)
++..++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9987764
No 57
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-44 Score=362.16 Aligned_cols=223 Identities=27% Similarity=0.453 Sum_probs=197.7
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..++++||++++. ...+++||||++++||+++|+||||||||||+|+|+|+++|+ +|+
T Consensus 3 ~lL~v~~l~k~FG--------------------Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~--~G~ 60 (250)
T COG0411 3 PLLEVRGLSKRFG--------------------GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS--SGT 60 (250)
T ss_pred ceeeeccceeecC--------------------CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC--Cce
Confidence 4688999999986 467999999999999999999999999999999999999865 899
Q ss_pred EEECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcC--------CC-CCcHHHHHHHHHHHHHHcCCc
Q 036088 161 VTLNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRL--------PR-SLSKEKKRKRVDALIDQLGLR 227 (737)
Q Consensus 161 I~~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~ 227 (737)
|.++|++++... .+.-++..||...+|++|||.||+..++..+. +. ....++..+++.++|+.+||.
T Consensus 61 v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~ 140 (250)
T COG0411 61 VIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG 140 (250)
T ss_pred EEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc
Confidence 999999997532 34456789999999999999999998865331 11 113455678899999999999
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHH
Q 036088 228 SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRIL 306 (737)
Q Consensus 228 ~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 306 (737)
+.+|+..| .||+|||||+.|||||+++|++|+||||.+||.+..+.++.+.|+++.++ |.||+++-|++. .++
T Consensus 141 ~~a~~~A~-----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm 214 (250)
T COG0411 141 ELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVM 214 (250)
T ss_pred hhhcchhh-----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHh
Confidence 99988877 49999999999999999999999999999999999999999999999984 699999999987 599
Q ss_pred hhcceEEEecCCEEEeeCChhhHHH
Q 036088 307 SLLDRLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 307 ~~~D~v~lL~~G~iv~~G~~~~~~~ 331 (737)
.+||||++|+.|++++.|+|+++.+
T Consensus 215 ~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 215 GLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred hhccEEEeccCCcCcccCCHHHHhc
Confidence 9999999999999999999998753
No 58
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-44 Score=370.33 Aligned_cols=220 Identities=29% Similarity=0.442 Sum_probs=185.6
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||+++|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.
T Consensus 1 l~~~~l~~~~~~-------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~ 59 (241)
T cd03256 1 IEVENLSKTYPN-------------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVL 59 (241)
T ss_pred CEEeeEEEecCC-------------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEE
Confidence 468899998852 14599999999999999999999999999999999999874 489999
Q ss_pred ECCEeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcC-----CCCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 163 LNGEVLGSK------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRL-----PRSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 163 ~~G~~~~~~------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
++|+++... ..++.++|++|++.+++.+||+||+.+...... ..........++++++++.+||.+..+
T Consensus 60 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 139 (241)
T cd03256 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY 139 (241)
T ss_pred ECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC
Confidence 999987532 235668999999999999999999987542110 001112334567889999999987665
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcc
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 310 (737)
+. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||
T Consensus 140 ~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d 213 (241)
T cd03256 140 QR-----ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYAD 213 (241)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCC
Confidence 54 4579999999999999999999999999999999999999999999999864 899999999986 4778999
Q ss_pred eEEEecCCEEEeeCChhhH
Q 036088 311 RLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~ 329 (737)
++++|++|++++.|+++++
T Consensus 214 ~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 214 RIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred EEEEEECCEEEeecCHHHh
Confidence 9999999999999988775
No 59
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=9.1e-44 Score=364.54 Aligned_cols=217 Identities=33% Similarity=0.537 Sum_probs=187.1
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||++.|+.. .+++|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.
T Consensus 1 l~~~~l~~~~~~~------------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~ 60 (220)
T cd03263 1 LQIRNLTKTYKKG------------------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT--SGTAY 60 (220)
T ss_pred CEEEeeEEEeCCC------------------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEE
Confidence 4789999998521 146999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 163 LNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 163 ~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
++|+++.. ...++.++||+|++.+++.+||+||+.+..... ..+..+..++++++++.+||.+..++.++
T Consensus 61 ~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (220)
T cd03263 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR----- 132 (220)
T ss_pred ECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhh-----
Confidence 99998753 234566899999999999999999999865433 12334445678999999999877766554
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i 210 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKL 210 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEE
Confidence 6999999999999999999999999999999999999999999999976 599999999986 47789999999999999
Q ss_pred EeeCChhhH
Q 036088 321 VCSEAPSNL 329 (737)
Q Consensus 321 v~~G~~~~~ 329 (737)
++.|+++++
T Consensus 211 ~~~~~~~~~ 219 (220)
T cd03263 211 RCIGSPQEL 219 (220)
T ss_pred EecCCHHHc
Confidence 999987653
No 60
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-45 Score=355.28 Aligned_cols=221 Identities=27% Similarity=0.497 Sum_probs=198.5
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|..+||.++|+ +++++++||+++++||+++++|||||||||.+.++.|+.+++ +|+|
T Consensus 4 ~L~a~~l~K~y~--------------------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d--~G~i 61 (243)
T COG1137 4 TLVAENLAKSYK--------------------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD--SGKI 61 (243)
T ss_pred EEEehhhhHhhC--------------------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC--CceE
Confidence 688899999996 467999999999999999999999999999999999998865 8999
Q ss_pred EECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.+||.+++... .|.-+||+||++..|..|||+|||+...+.+.. ...+.+++++++++|+++++.+.++++-
T Consensus 62 ~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a--- 137 (243)
T COG1137 62 LLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA--- 137 (243)
T ss_pred EECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc---
Confidence 99999998643 234479999999999999999999988877632 2233566778999999999999987654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
..||||||+|+.|||||+.+|+.++||||++|.||-+..+|.++++.|++.|.-|++|-|... +.+.+|||.+++++
T Consensus 138 --~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~ 214 (243)
T COG1137 138 --YSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD 214 (243)
T ss_pred --cccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec
Confidence 469999999999999999999999999999999999999999999999999999999999987 58999999999999
Q ss_pred CEEEeeCChhhHHH
Q 036088 318 GQAVCSEAPSNLSQ 331 (737)
Q Consensus 318 G~iv~~G~~~~~~~ 331 (737)
|++.++|+++++.+
T Consensus 215 G~vla~G~p~ei~~ 228 (243)
T COG1137 215 GKVLAEGSPEEIVN 228 (243)
T ss_pred CeEEecCCHHHHhc
Confidence 99999999998753
No 61
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.3e-43 Score=380.42 Aligned_cols=218 Identities=30% Similarity=0.494 Sum_probs=193.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.++++|++++|+ .+.+|+|+||++++||+++|+|||||||||||++|+|++++. +|+|
T Consensus 2 ~l~~~~l~~~~~--------------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~--~G~i 59 (301)
T TIGR03522 2 SIRVSSLTKLYG--------------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD--SGSV 59 (301)
T ss_pred EEEEEEEEEEEC--------------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--ceEE
Confidence 488999999995 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 162 TLNGEVLGSK--LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 162 ~~~G~~~~~~--~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
.++|+++... ..++.+||++|++.+++.+||.||+.+.+.++ ..+.++..++++++++.+||.+..++.++
T Consensus 60 ~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 132 (301)
T TIGR03522 60 QVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIG---- 132 (301)
T ss_pred EECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchh----
Confidence 9999987542 34567899999999999999999999876543 23345556678999999999988766654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.||||||||++||+||+++|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++|||+++|++|+
T Consensus 133 -~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 133 -QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGK 209 (301)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999965 799999999986 5889999999999999
Q ss_pred EEeeCChhhHHH
Q 036088 320 AVCSEAPSNLSQ 331 (737)
Q Consensus 320 iv~~G~~~~~~~ 331 (737)
+++.|+++++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998755
No 62
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=8.1e-44 Score=366.79 Aligned_cols=216 Identities=25% Similarity=0.364 Sum_probs=184.0
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCCc
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRI-----SKQRL 157 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~-----~~~~~ 157 (737)
|+++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+. + +.
T Consensus 1 i~~~~l~~~~~--------------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~ 58 (227)
T cd03260 1 IELRDLNVYYG--------------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PD 58 (227)
T ss_pred CEEEEEEEEcC--------------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CC
Confidence 46899999985 246999999999999999999999999999999999998 5 44
Q ss_pred ceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc
Q 036088 158 KGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 158 ~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 232 (737)
+|+|.++|+++.. ...++.++|++|++.++ .+||+||+.++...+. .....+.+++++++++.+|+.+..+.
T Consensus 59 ~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKD 135 (227)
T ss_pred CeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhc
Confidence 8999999998753 22456789999999888 7899999998754321 11222345778999999999876554
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.+. +..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+.++||++
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i 210 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRT 210 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEE
Confidence 420 3579999999999999999999999999999999999999999999999877 99999999986 578899999
Q ss_pred EEecCCEEEeeCChhh
Q 036088 313 IFLSNGQAVCSEAPSN 328 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~ 328 (737)
++|++|++++.|++++
T Consensus 211 ~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEeCCEEEEecCccc
Confidence 9999999999998765
No 63
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=8e-44 Score=382.36 Aligned_cols=207 Identities=26% Similarity=0.414 Sum_probs=184.1
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc--cccceEEEEecCCCCCCCCCH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK--LLKIISAYVMQDDLLYSMLTI 192 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yV~Q~~~l~~~lTV 192 (737)
+.+|+|+||++++||+++|+||||||||||+|+|+|+++|. +|+|.++|+++... ..++.+||++|++.+++.+||
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT--SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 56999999999999999999999999999999999998754 89999999987532 345678999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 036088 193 EETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGL 272 (737)
Q Consensus 193 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgL 272 (737)
+||+.+.+..+ ..+..+.+++++++++.+||.+..++.++ .|||||||||+||+||+.+|++|||||||+||
T Consensus 84 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 84 RENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 99999876543 23344556789999999999887766654 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHHHH
Q 036088 273 DSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLSQF 332 (737)
Q Consensus 273 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 332 (737)
|+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+.
T Consensus 156 D~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999878999999999986 58889999999999999999999887553
No 64
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.1e-43 Score=366.90 Aligned_cols=219 Identities=29% Similarity=0.459 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|++++ .+|+|
T Consensus 1 ~l~~~~l~~~~~--------------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i 58 (240)
T PRK09493 1 MIEFKNVSKHFG--------------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDL 58 (240)
T ss_pred CEEEEeEEEEEC--------------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEE
Confidence 478999999985 24599999999999999999999999999999999999874 48999
Q ss_pred EECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 162 TLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 162 ~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
.++|+++.. ...++.++|++|++.+++.+||+||+.++.... ......+..++++++++.+||.+..+..+
T Consensus 59 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 134 (240)
T PRK09493 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP-- 134 (240)
T ss_pred EECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh--
Confidence 999998753 123567899999999999999999998864211 12234445677899999999987665544
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|+
T Consensus 135 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~ 210 (240)
T PRK09493 135 ---SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFID 210 (240)
T ss_pred ---hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999999877999999999986 4778999999999
Q ss_pred CCEEEeeCChhhHH
Q 036088 317 NGQAVCSEAPSNLS 330 (737)
Q Consensus 317 ~G~iv~~G~~~~~~ 330 (737)
+|++++.|+++++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (240)
T PRK09493 211 KGRIAEDGDPQVLI 224 (240)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999887653
No 65
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-43 Score=374.95 Aligned_cols=222 Identities=26% Similarity=0.426 Sum_probs=188.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||++.|+... ...+.+|+||||+|++||++||+||||||||||+++|+|++++. +|+|
T Consensus 2 ~l~~~~l~~~y~~~~---------------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~--~G~i 64 (287)
T PRK13637 2 SIKIENLTHIYMEGT---------------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT--SGKI 64 (287)
T ss_pred EEEEEEEEEECCCCC---------------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ccEE
Confidence 489999999996321 01246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc-----cccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc--ccccc
Q 036088 162 TLNGEVLGSK-----LLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR--SAAMT 232 (737)
Q Consensus 162 ~~~G~~~~~~-----~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~ 232 (737)
.++|+++... ..++.+|||+|++ .++ ..||+||+.|+.... ..++++..++++++++.+||. +..++
T Consensus 65 ~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 140 (287)
T PRK13637 65 IIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK 140 (287)
T ss_pred EECCEECCCcCccHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC
Confidence 9999998541 3456789999986 344 469999999875432 345566677899999999996 44444
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcce
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 311 (737)
.++.||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. ++.++||+
T Consensus 141 -----~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dr 214 (287)
T PRK13637 141 -----SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADR 214 (287)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 44579999999999999999999999999999999999999999999999875 899999999976 47789999
Q ss_pred EEEecCCEEEeeCChhhHH
Q 036088 312 LIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~ 330 (737)
|++|++|++++.|+++++.
T Consensus 215 v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 215 IIVMNKGKCELQGTPREVF 233 (287)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
No 66
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.1e-43 Score=363.36 Aligned_cols=210 Identities=28% Similarity=0.457 Sum_probs=178.8
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||+++|+... +.+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.
T Consensus 1 l~~~~l~~~~~~~~----------------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~ 62 (218)
T cd03255 1 IELKNLSKTYGGGG----------------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT--SGEVR 62 (218)
T ss_pred CeEeeeEEEecCCC----------------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC--ceeEE
Confidence 46899999996310 1156999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCccc-------ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 163 LNGEVLGSKL-------LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 163 ~~G~~~~~~~-------~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
++|+++.... .++.++|++|++.+++.+||+||+.+....+ .......+++++++++.+||.+..++.+
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 63 VDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred ECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-
Confidence 9999875321 2456899999999999999999999876543 1233445567899999999987665554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++.. +. .||++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEE
Confidence 46999999999999999999999999999999999999999999999987 58999999999864 54 9999999
Q ss_pred ecCCEE
Q 036088 315 LSNGQA 320 (737)
Q Consensus 315 L~~G~i 320 (737)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
No 67
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.5e-43 Score=391.21 Aligned_cols=220 Identities=23% Similarity=0.402 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|++++. +|+|
T Consensus 3 ~L~~~nls~~y~--------------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~--sG~I 60 (402)
T PRK09536 3 MIDVSDLSVEFG--------------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTV 60 (402)
T ss_pred eEEEeeEEEEEC--------------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC--CcEE
Confidence 689999999996 356999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.++|+++.. ...++.+|||+|++.+++.+||+||+.++...... ........+++++++++.+|+.+..++.+
T Consensus 61 ~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~--- 137 (402)
T PRK09536 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV--- 137 (402)
T ss_pred EECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh---
Confidence 999998754 24566789999999998889999999986431110 01112345678999999999988776655
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
+.||||||||++|||+|+++|++|||||||+|||+.++.++++.|++++++|+|||+++|+++ ++.++|||+++|++
T Consensus 138 --~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~ 214 (402)
T PRK09536 138 --TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD 214 (402)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999877999999999986 58899999999999
Q ss_pred CEEEeeCChhhH
Q 036088 318 GQAVCSEAPSNL 329 (737)
Q Consensus 318 G~iv~~G~~~~~ 329 (737)
|++++.|+++++
T Consensus 215 G~iv~~G~~~ev 226 (402)
T PRK09536 215 GRVRAAGPPADV 226 (402)
T ss_pred CEEEEecCHHHH
Confidence 999999999874
No 68
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.4e-43 Score=363.59 Aligned_cols=214 Identities=26% Similarity=0.454 Sum_probs=183.5
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||+++|+ .+++|+|+||++++||+++|+|||||||||||++|+|++++. +|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~ 58 (222)
T cd03224 1 LEVENLNAGYG--------------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR--SGSIR 58 (222)
T ss_pred CEEeeEEeecC--------------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CceEE
Confidence 46899999885 245999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHc-CCcccccccccCC
Q 036088 163 LNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQL-GLRSAAMTIIGDE 237 (737)
Q Consensus 163 ~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~ 237 (737)
++|+++.... .++.++|++|++.+++.+||+||+.+...... ..+..++++++++.+ ++.+..++.+
T Consensus 59 ~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~--- 130 (222)
T cd03224 59 FDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA--- 130 (222)
T ss_pred ECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch---
Confidence 9999875321 24568999999999999999999998754321 123345677888888 5766555544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++
T Consensus 131 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 207 (222)
T cd03224 131 --GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER 207 (222)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC
Confidence 469999999999999999999999999999999999999999999999877899999999986 57899999999999
Q ss_pred CEEEeeCChhhH
Q 036088 318 GQAVCSEAPSNL 329 (737)
Q Consensus 318 G~iv~~G~~~~~ 329 (737)
|+++..|+++++
T Consensus 208 G~i~~~~~~~~~ 219 (222)
T cd03224 208 GRVVLEGTAAEL 219 (222)
T ss_pred CeEEEeCCHHHH
Confidence 999999987765
No 69
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-43 Score=378.68 Aligned_cols=223 Identities=26% Similarity=0.424 Sum_probs=189.3
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||++.|+... ...+.+|+|||++|++||++||+||||||||||+++|+|++++. +|+
T Consensus 20 ~~l~~~nl~~~y~~~~---------------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~--~G~ 82 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ---------------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK--YGT 82 (320)
T ss_pred ceEEEEeEEEEeCCCC---------------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCe
Confidence 4799999999996321 01246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcc-------------------cccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHH
Q 036088 161 VTLNGEVLGSK-------------------LLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDA 219 (737)
Q Consensus 161 I~~~G~~~~~~-------------------~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~ 219 (737)
|.++|+++... ..++.++||+|++ .+++. ||+||+.|+.... ..+..+..+++++
T Consensus 83 I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~ 158 (320)
T PRK13631 83 IQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL---GVKKSEAKKLAKF 158 (320)
T ss_pred EEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc---CCCHHHHHHHHHH
Confidence 99999887431 3456789999986 57765 9999998875321 2344555678899
Q ss_pred HHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEe
Q 036088 220 LIDQLGLR-SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSI 298 (737)
Q Consensus 220 ~l~~lgL~-~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~ 298 (737)
+++.+||. +..++ .+..||||||||++|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++|
T Consensus 159 ~l~~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~Tiiivt 233 (320)
T PRK13631 159 YLNKMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVIT 233 (320)
T ss_pred HHHHcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 99999996 44433 4457999999999999999999999999999999999999999999999987899999999
Q ss_pred cCCcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 299 HQPSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 299 H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
|+++ .+.+.||++++|++|++++.|+++++.
T Consensus 234 Hd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 234 HTME-HVLEVADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred cCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9986 477899999999999999999998763
No 70
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.5e-43 Score=368.33 Aligned_cols=218 Identities=26% Similarity=0.392 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|++++ .+|+|
T Consensus 3 ~l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i 60 (250)
T PRK11264 3 AIEVKNLVKKFH--------------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTI 60 (250)
T ss_pred cEEEeceEEEEC--------------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEE
Confidence 589999999995 24599999999999999999999999999999999999875 48999
Q ss_pred EECCEeCCc-----------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccc
Q 036088 162 TLNGEVLGS-----------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAA 230 (737)
Q Consensus 162 ~~~G~~~~~-----------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 230 (737)
.++|+++.. ...++.++||+|++.+++.+||+||+.++..... ........++++++++.+||.+..
T Consensus 61 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~ 138 (250)
T PRK11264 61 RVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKE 138 (250)
T ss_pred EECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchh
Confidence 999998752 1235568999999999998999999987542111 123344566789999999998766
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
++.+ +.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||
T Consensus 139 ~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d 212 (250)
T PRK11264 139 TSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVAD 212 (250)
T ss_pred hCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 5544 469999999999999999999999999999999999999999999999877999999999986 5788999
Q ss_pred eEEEecCCEEEeeCChhhH
Q 036088 311 RLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~ 329 (737)
++++|++|++++.|+++++
T Consensus 213 ~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999988765
No 71
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.7e-43 Score=386.15 Aligned_cols=206 Identities=22% Similarity=0.368 Sum_probs=184.2
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc---cc----cceEEEEecCCCC
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK---LL----KIISAYVMQDDLL 186 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~---~~----~~~~~yV~Q~~~l 186 (737)
.+.+|+|+||+|++||+++|+|||||||||||++|+|+.+|. +|+|.++|+++... .. ++.++||+|++.+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~--~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT--AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC--ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 456999999999999999999999999999999999998754 89999999998642 22 5679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 036088 187 YSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLD 266 (737)
Q Consensus 187 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLD 266 (737)
|+++||+||+.|+.... ..++++..+++.++++.+||.+..++.+ ..|||||||||+|||||+.+|+|||||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999986543 3455667788999999999987765554 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 267 EPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 267 EPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
|||+|||+.++..+.+.|+++.++ |+|||++||++. ++.++||+|++|++|+++..|+++++.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999999999764 899999999986 588999999999999999999998874
No 72
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-43 Score=371.77 Aligned_cols=218 Identities=24% Similarity=0.352 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+. .+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 4 ~l~~~~l~~~~~~-------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i 62 (274)
T PRK13647 4 IIEVEDLHFRYKD-------------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRV 62 (274)
T ss_pred eEEEEEEEEEeCC-------------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ceEE
Confidence 6899999999952 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGSK---LLKIISAYVMQDDL-LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~~---~~~~~~~yV~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.++|+++... ..++.++||+|++. .+...||.||+.|+.... .....+.+++++++++.+||.+..++.+
T Consensus 63 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~--- 136 (274)
T PRK13647 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP--- 136 (274)
T ss_pred EECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh---
Confidence 9999988532 23556899999962 344579999999875422 2344455677899999999987766554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
..||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++|++
T Consensus 137 --~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~ 213 (274)
T PRK13647 137 --YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE 213 (274)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999877999999999986 47789999999999
Q ss_pred CEEEeeCChhhH
Q 036088 318 GQAVCSEAPSNL 329 (737)
Q Consensus 318 G~iv~~G~~~~~ 329 (737)
|++++.|+++++
T Consensus 214 G~i~~~g~~~~~ 225 (274)
T PRK13647 214 GRVLAEGDKSLL 225 (274)
T ss_pred CEEEEECCHHHh
Confidence 999999998654
No 73
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-43 Score=366.75 Aligned_cols=217 Identities=28% Similarity=0.467 Sum_probs=187.2
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||+++|+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.
T Consensus 1 l~~~~l~~~~~~-------------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~ 59 (242)
T cd03295 1 IEFENVTKRYGG-------------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT--SGEIF 59 (242)
T ss_pred CEEEEEEEEeCC-------------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEE
Confidence 468899999862 145999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc--cccccccCC
Q 036088 163 LNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS--AAMTIIGDE 237 (737)
Q Consensus 163 ~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~ 237 (737)
++|+++.. ...++.++|++|++.+++.+||+||+.+..... .....+..++++++++.+||.+ ..++.
T Consensus 60 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~---- 132 (242)
T cd03295 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY---- 132 (242)
T ss_pred ECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC----
Confidence 99998753 234557899999999999999999999875432 2234455678899999999985 44444
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEec
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|+
T Consensus 133 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~ 210 (242)
T cd03295 133 -PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK 210 (242)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 4579999999999999999999999999999999999999999999999875 899999999986 5788999999999
Q ss_pred CCEEEeeCChhhH
Q 036088 317 NGQAVCSEAPSNL 329 (737)
Q Consensus 317 ~G~iv~~G~~~~~ 329 (737)
+|++++.|+++++
T Consensus 211 ~G~i~~~~~~~~~ 223 (242)
T cd03295 211 NGEIVQVGTPDEI 223 (242)
T ss_pred CCEEEEecCHHHH
Confidence 9999999987765
No 74
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-43 Score=362.76 Aligned_cols=217 Identities=25% Similarity=0.376 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+.+. ..+.+|+|+||++++||+++|+||||||||||+++|+|++++ .+|+|
T Consensus 5 ~l~~~~l~~~~~~~~----------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i 66 (233)
T PRK11629 5 LLQCDNLCKRYQEGS----------------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDV 66 (233)
T ss_pred eEEEEeEEEEcCCCC----------------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEE
Confidence 699999999996321 124699999999999999999999999999999999999875 48999
Q ss_pred EECCEeCCccc------c-cceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 162 TLNGEVLGSKL------L-KIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 162 ~~~G~~~~~~~------~-~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
.++|+++.... . ++.++|++|++.+++.+||+||+.+..... .....+.+++++++++.+||.+..++.+
T Consensus 67 ~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 143 (233)
T PRK11629 67 IFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP 143 (233)
T ss_pred EECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh
Confidence 99999875421 1 256899999999999999999999865432 2233445678899999999987665544
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
+.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++.. +. .+|+++
T Consensus 144 -----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~-~~~~~~ 216 (233)
T PRK11629 144 -----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AK-RMSRQL 216 (233)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HH-hhCEEE
Confidence 46999999999999999999999999999999999999999999999976 58999999999864 44 468999
Q ss_pred EecCCEEEeeCCh
Q 036088 314 FLSNGQAVCSEAP 326 (737)
Q Consensus 314 lL~~G~iv~~G~~ 326 (737)
+|++|+++..|+.
T Consensus 217 ~l~~G~i~~~~~~ 229 (233)
T PRK11629 217 EMRDGRLTAELSL 229 (233)
T ss_pred EEECCEEEEEecc
Confidence 9999999987753
No 75
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-44 Score=397.87 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=190.4
Q ss_pred CCCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 036088 78 NYPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRL 157 (737)
Q Consensus 78 ~~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~ 157 (737)
..+..++.+|+++.|+++ +++++|+|+++++|+.+||+|+||||||||+++|+|+.++ +
T Consensus 316 ~~~~ei~~~~l~~~y~~g-------------------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~ 374 (559)
T COG4988 316 EPPIEISLENLSFRYPDG-------------------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--T 374 (559)
T ss_pred CCCceeeecceEEecCCC-------------------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--C
Confidence 345678888999999853 4799999999999999999999999999999999999875 4
Q ss_pred ceEEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc------c
Q 036088 158 KGTVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR------S 228 (737)
Q Consensus 158 ~G~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~------~ 228 (737)
+|+|.+||.+..+ ..+++.++||+|++++|+. |++|||.++... .+ ++.+.+++++.||. +
T Consensus 375 ~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~-----~s----~e~i~~al~~a~l~~~v~~p~ 444 (559)
T COG4988 375 QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD-----AS----DEEIIAALDQAGLLEFVPKPD 444 (559)
T ss_pred CceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc-----CC----HHHHHHHHHHhcHHHhhcCCC
Confidence 8999999988754 5688999999999999998 999999987432 12 33455666665554 3
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhh
Q 036088 229 AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSL 308 (737)
Q Consensus 229 ~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 308 (737)
..|+.+| +.+++|||||+|||++||||+.+++++++||||++||.++++.|++.|.++++ ++|+|++||++. ....
T Consensus 445 GLdt~ig-e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~ 520 (559)
T COG4988 445 GLDTVIG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAAD 520 (559)
T ss_pred cccchhc-cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhc
Confidence 5678887 57788999999999999999999999999999999999999999999999987 599999999975 4788
Q ss_pred cceEEEecCCEEEeeCChhhHHH
Q 036088 309 LDRLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 309 ~D~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|+|++|++|++++.|.++++.+
T Consensus 521 ~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 521 ADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred CCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999998854
No 76
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-43 Score=374.53 Aligned_cols=222 Identities=24% Similarity=0.393 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+++|+... ...+++|+|||++|++||+++|+||||||||||+++|+|+.++. +|+|
T Consensus 2 ~l~~~~l~~~y~~~~---------------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i 64 (290)
T PRK13634 2 DITFQKVEHRYQYKT---------------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT--SGTV 64 (290)
T ss_pred EEEEEEEEEEECCCC---------------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEE
Confidence 389999999996321 01246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc-------ccccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccc
Q 036088 162 TLNGEVLGS-------KLLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAM 231 (737)
Q Consensus 162 ~~~G~~~~~-------~~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 231 (737)
.++|+++.. ...++.+|||+|++ .+++ .||+||+.|+.... ..+..+.+++++++++.+||. +..+
T Consensus 65 ~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~ 140 (290)
T PRK13634 65 TIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLA 140 (290)
T ss_pred EECCEECccccccchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhh
Confidence 999998742 13456789999986 4564 69999999875432 234555567899999999996 4455
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcc
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 310 (737)
+. ++.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||
T Consensus 141 ~~-----~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~d 214 (290)
T PRK13634 141 RS-----PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYAD 214 (290)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCC
Confidence 44 4579999999999999999999999999999999999999999999999765 899999999986 5888999
Q ss_pred eEEEecCCEEEeeCChhhHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~ 330 (737)
||++|++|++++.|+++++.
T Consensus 215 rv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 215 QIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred EEEEEECCEEEEECCHHHHh
Confidence 99999999999999988763
No 77
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.8e-43 Score=359.37 Aligned_cols=207 Identities=30% Similarity=0.459 Sum_probs=180.5
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+ .+++|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~ 58 (208)
T cd03268 1 LKTNDLTKTYG--------------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEIT 58 (208)
T ss_pred CEEEEEEEEEC--------------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEE
Confidence 46899999985 24699999999999999999999999999999999999874 489999
Q ss_pred ECCEeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 163 LNGEVLGS-KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 163 ~~G~~~~~-~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
++|+++.. ...++.++||+|++.+++.+||+||+.+..... .. .+++++++++.+|+.+..++.++ .
T Consensus 59 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (208)
T cd03268 59 FDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVK-----G 126 (208)
T ss_pred ECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHh-----h
Confidence 99998753 233556899999999999999999998875432 11 24568899999999877766554 6
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAV 321 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 321 (737)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+++|++++|++|+++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLI 205 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999878899999999986 477899999999999998
Q ss_pred eeC
Q 036088 322 CSE 324 (737)
Q Consensus 322 ~~G 324 (737)
+.|
T Consensus 206 ~~g 208 (208)
T cd03268 206 EEG 208 (208)
T ss_pred ecC
Confidence 765
No 78
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.6e-43 Score=368.23 Aligned_cols=221 Identities=29% Similarity=0.406 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|
T Consensus 1 ~l~~~~l~~~~~~-------------------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i 59 (243)
T TIGR02315 1 MLEVENLSKVYPN-------------------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSI 59 (243)
T ss_pred CeEEEeeeeecCC-------------------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEE
Confidence 4789999998851 24599999999999999999999999999999999999875 48999
Q ss_pred EECCEeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcC-----CCCCcHHHHHHHHHHHHHHcCCcccc
Q 036088 162 TLNGEVLGSK------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRL-----PRSLSKEKKRKRVDALIDQLGLRSAA 230 (737)
Q Consensus 162 ~~~G~~~~~~------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~ 230 (737)
.++|+++... ..++.++||+|++.+++.+||+||+.++..... .......+.+++++++++.+||.+..
T Consensus 60 ~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 139 (243)
T TIGR02315 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA 139 (243)
T ss_pred EECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh
Confidence 9999987531 235678999999999999999999987532100 00111233456789999999998766
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 309 (737)
+..+ ..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++|
T Consensus 140 ~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~ 213 (243)
T TIGR02315 140 YQRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYA 213 (243)
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhc
Confidence 5544 469999999999999999999999999999999999999999999999764 899999999986 477899
Q ss_pred ceEEEecCCEEEeeCChhhH
Q 036088 310 DRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~~~ 329 (737)
|++++|++|++++.|+++++
T Consensus 214 d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 214 DRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred CeEEEEECCEEEecCCHHHh
Confidence 99999999999999988764
No 79
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.1e-43 Score=370.93 Aligned_cols=218 Identities=25% Similarity=0.438 Sum_probs=188.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+ ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|. +|+|
T Consensus 7 ~l~~~~l~~~~~--------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i 64 (269)
T PRK11831 7 LVDMRGVSFTRG--------------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD--HGEI 64 (269)
T ss_pred eEEEeCeEEEEC--------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceE
Confidence 799999999985 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLGSK------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~~------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|+++... ..++.++|++|+..+++.+||.||+.+...... .......++++.++++.+||.+..++.+
T Consensus 65 ~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~- 141 (269)
T PRK11831 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP- 141 (269)
T ss_pred EECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-
Confidence 9999987531 134568999999999999999999988643211 1234445567889999999987776554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++
T Consensus 142 ----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~ 216 (269)
T PRK11831 142 ----SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYI 216 (269)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEE
Confidence 469999999999999999999999999999999999999999999999765 899999999976 57889999999
Q ss_pred ecCCEEEeeCChhhH
Q 036088 315 LSNGQAVCSEAPSNL 329 (737)
Q Consensus 315 L~~G~iv~~G~~~~~ 329 (737)
|++|++++.|+++++
T Consensus 217 l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 217 VADKKIVAHGSAQAL 231 (269)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999988765
No 80
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=4.2e-43 Score=361.38 Aligned_cols=222 Identities=43% Similarity=0.679 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCcceE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK-QRLKGT 160 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~-~~~~G~ 160 (737)
.+.|+|+++.++... ..+++|+|+||++++||+++|+||||||||||+++|+|++++ .+.+|+
T Consensus 3 ~~~~~~~~~~~~~~~----------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~ 66 (226)
T cd03234 3 VLPWWDVGLKAKNWN----------------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQ 66 (226)
T ss_pred cceeecceeeeecCc----------------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceE
Confidence 467999999996321 136799999999999999999999999999999999999861 134899
Q ss_pred EEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHH-HHHHcCCcccccccccCCCC
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDA-LIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~ 239 (737)
|.++|+++.....++.++|++|++.+++.+||+||+.++.....+.........+++++ .++.+++.+..++. +
T Consensus 67 i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 141 (226)
T cd03234 67 ILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----V 141 (226)
T ss_pred EEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----c
Confidence 99999988654566778999999999999999999998765432222222333345566 89999987666544 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++..++.++||++++|++|+
T Consensus 142 ~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~ 221 (226)
T cd03234 142 KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGE 221 (226)
T ss_pred cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCE
Confidence 46999999999999999999999999999999999999999999999987789999999998546899999999999999
Q ss_pred EEeeC
Q 036088 320 AVCSE 324 (737)
Q Consensus 320 iv~~G 324 (737)
+++.|
T Consensus 222 i~~~g 226 (226)
T cd03234 222 IVYSG 226 (226)
T ss_pred EEecC
Confidence 98765
No 81
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.5e-43 Score=358.68 Aligned_cols=208 Identities=31% Similarity=0.468 Sum_probs=180.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++|+. ++.+|+|+||++++||+++|+||||||||||+++|+|++++ .+|+|
T Consensus 1 ~l~~~~l~~~~~~-------------------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i 59 (214)
T TIGR02673 1 MIEFHNVSKAYPG-------------------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQV 59 (214)
T ss_pred CEEEEeeeEEeCC-------------------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceE
Confidence 4789999999841 24599999999999999999999999999999999999875 48999
Q ss_pred EECCEeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLGSK------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~~------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|+++... ..++.++|++|++.+++.+||+||+.+....+ .......+++++++++.+||.+..++.+
T Consensus 60 ~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 135 (214)
T TIGR02673 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP- 135 (214)
T ss_pred EECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-
Confidence 9999987531 23567899999999999999999999875432 1233445678899999999987665554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|
T Consensus 136 ----~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l 210 (214)
T TIGR02673 136 ----EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIIL 210 (214)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEe
Confidence 469999999999999999999999999999999999999999999999877999999999986 578899999999
Q ss_pred cCCE
Q 036088 316 SNGQ 319 (737)
Q Consensus 316 ~~G~ 319 (737)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9885
No 82
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-43 Score=371.27 Aligned_cols=220 Identities=26% Similarity=0.450 Sum_probs=189.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+.. +.+.+|+|+|++|++||++||+||||||||||+++|+|+++|. +|+|
T Consensus 4 ~l~~~~l~~~~~~~-----------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i 64 (279)
T PRK13650 4 IIEVKNLTFKYKED-----------------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE--SGQI 64 (279)
T ss_pred eEEEEeEEEEcCCC-----------------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEE
Confidence 68999999999631 1245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDD-LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.++|+++.. ...++.++||+|++ .+++..||+||+.|+.... ..+.++..++++++++.+||.+..+..+
T Consensus 65 ~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~--- 138 (279)
T PRK13650 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP--- 138 (279)
T ss_pred EECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 999999853 23456789999997 4667789999999875432 3455566678999999999987765554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEec
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
..||||||||++|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++.. + ..||++++|+
T Consensus 139 --~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~ 214 (279)
T PRK13650 139 --ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMK 214 (279)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999999875 9999999999864 5 6899999999
Q ss_pred CCEEEeeCChhhHH
Q 036088 317 NGQAVCSEAPSNLS 330 (737)
Q Consensus 317 ~G~iv~~G~~~~~~ 330 (737)
+|+++..|+++++.
T Consensus 215 ~G~i~~~g~~~~~~ 228 (279)
T PRK13650 215 NGQVESTSTPRELF 228 (279)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999988764
No 83
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-43 Score=375.77 Aligned_cols=222 Identities=25% Similarity=0.394 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+++|+... .....+|+||||+|++||++||+||||||||||+++|+|++++. +|+|
T Consensus 2 ~i~~~~l~~~y~~~~---------------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~--~G~i 64 (305)
T PRK13651 2 QIKVKNIVKIFNKKL---------------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD--TGTI 64 (305)
T ss_pred EEEEEEEEEEECCCC---------------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEE
Confidence 489999999996321 01246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---------------------------ccccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHH
Q 036088 162 TLNGEVLGS---------------------------KLLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEK 212 (737)
Q Consensus 162 ~~~G~~~~~---------------------------~~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~ 212 (737)
+++|++... ...++.+|||+|++ .++ ..||+|||.|+.... ..++.+
T Consensus 65 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~ 140 (305)
T PRK13651 65 EWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEE 140 (305)
T ss_pred EEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHH
Confidence 999876521 12456789999985 455 469999999875432 345556
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 036088 213 KRKRVDALIDQLGLR-SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSG 291 (737)
Q Consensus 213 ~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g 291 (737)
..++++++++.+||. +..++. +..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|
T Consensus 141 ~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g 215 (305)
T PRK13651 141 AKKRAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQG 215 (305)
T ss_pred HHHHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 677899999999996 555544 45799999999999999999999999999999999999999999999998779
Q ss_pred cEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 292 SIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 292 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
+|||++||++. .+.++||||++|++|++++.|+++++.
T Consensus 216 ~tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999976 478999999999999999999988763
No 84
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-43 Score=364.46 Aligned_cols=218 Identities=25% Similarity=0.486 Sum_probs=188.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|
T Consensus 3 ~l~~~~l~~~~~--------------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i 60 (241)
T PRK10895 3 TLTAKNLAKAYK--------------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD--AGNI 60 (241)
T ss_pred eEEEeCcEEEeC--------------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEE
Confidence 689999999985 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGSK----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~~----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.++|+++... ..++.++|++|++.+++.+||.||+.+...... .....+.+.+++++++.+|+.+..+..+
T Consensus 61 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 135 (241)
T PRK10895 61 IIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG--- 135 (241)
T ss_pred EECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch---
Confidence 9999987532 134568999999999999999999987643221 1233445678899999999986655444
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
+.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++
T Consensus 136 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~ 212 (241)
T PRK10895 136 --QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ 212 (241)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC
Confidence 479999999999999999999999999999999999999999999999877999999999985 58899999999999
Q ss_pred CEEEeeCChhhH
Q 036088 318 GQAVCSEAPSNL 329 (737)
Q Consensus 318 G~iv~~G~~~~~ 329 (737)
|++++.|+++++
T Consensus 213 G~i~~~~~~~~~ 224 (241)
T PRK10895 213 GHLIAHGTPTEI 224 (241)
T ss_pred CeEEeeCCHHHH
Confidence 999999988765
No 85
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.7e-43 Score=357.61 Aligned_cols=208 Identities=29% Similarity=0.451 Sum_probs=179.8
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.
T Consensus 1 l~~~~l~~~~~~-------------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~ 59 (214)
T cd03292 1 IEFINVTKTYPN-------------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT--SGTIR 59 (214)
T ss_pred CEEEEEEEEeCC-------------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEE
Confidence 468999999852 146999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 163 LNGEVLGSK------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 163 ~~G~~~~~~------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
++|+++... ..++.++||+|++.+++.+||+||+.+....+ ....++..++++++++.+|+.+..++.+
T Consensus 60 ~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (214)
T cd03292 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP-- 134 (214)
T ss_pred ECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh--
Confidence 999987531 24566899999999999999999999875432 1234445667899999999987665554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|+
T Consensus 135 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~ 210 (214)
T cd03292 135 ---AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALE 210 (214)
T ss_pred ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 469999999999999999999999999999999999999999999999877999999999986 4778899999999
Q ss_pred CCEE
Q 036088 317 NGQA 320 (737)
Q Consensus 317 ~G~i 320 (737)
+|++
T Consensus 211 ~G~~ 214 (214)
T cd03292 211 RGKL 214 (214)
T ss_pred CCcC
Confidence 9974
No 86
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.3e-43 Score=357.95 Aligned_cols=203 Identities=30% Similarity=0.449 Sum_probs=173.8
Q ss_pred EEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEEC
Q 036088 85 FNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLN 164 (737)
Q Consensus 85 ~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~ 164 (737)
++||+++|+. .+.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++
T Consensus 2 ~~~l~~~~~~-------------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 60 (205)
T cd03226 2 IENISFSYKK-------------------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES--SGSILLN 60 (205)
T ss_pred cccEEEEeCC-------------------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEEC
Confidence 6788888852 146999999999999999999999999999999999998754 8999999
Q ss_pred CEeCCcccccceEEEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 036088 165 GEVLGSKLLKIISAYVMQDDL-LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVS 243 (737)
Q Consensus 165 G~~~~~~~~~~~~~yV~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 243 (737)
|+++.....++.++|++|++. .+..+||+||+.+..... . ...++++++++.+||.+..++.+ ..||
T Consensus 61 g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 128 (205)
T cd03226 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL---D----AGNEQAETVLKDLDLYALKERHP-----LSLS 128 (205)
T ss_pred CEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc---C----ccHHHHHHHHHHcCCchhcCCCc-----hhCC
Confidence 998754445567899999974 334579999998865322 1 11356889999999987766554 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEE
Q 036088 244 GGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAV 321 (737)
Q Consensus 244 GGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 321 (737)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++
T Consensus 129 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 129 GGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999999999999999878999999999986 477899999999999875
No 87
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.2e-42 Score=360.37 Aligned_cols=218 Identities=31% Similarity=0.485 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|
T Consensus 1 ~l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i 58 (236)
T TIGR03864 1 ALEVAGLSFAYG--------------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQI 58 (236)
T ss_pred CEEEEeeEEEEC--------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ceEE
Confidence 478999999985 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 162 TLNGEVLGSK--LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 162 ~~~G~~~~~~--~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
.++|.++... ..++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.++
T Consensus 59 ~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 131 (236)
T TIGR03864 59 SVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR---- 131 (236)
T ss_pred EECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh----
Confidence 9999987532 22346899999998888899999998765432 23344455678999999999876665544
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
.||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +|+|+|++||++.. +. .+|++++|++|
T Consensus 132 -~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G 208 (236)
T TIGR03864 132 -ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRG 208 (236)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCC
Confidence 6999999999999999999999999999999999999999999999985 58999999999864 54 59999999999
Q ss_pred EEEeeCChhhHHH
Q 036088 319 QAVCSEAPSNLSQ 331 (737)
Q Consensus 319 ~iv~~G~~~~~~~ 331 (737)
++++.|+++++.+
T Consensus 209 ~i~~~~~~~~~~~ 221 (236)
T TIGR03864 209 RVLADGAAAELRG 221 (236)
T ss_pred eEEEeCCHHHHHH
Confidence 9999998877643
No 88
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-43 Score=371.26 Aligned_cols=222 Identities=24% Similarity=0.423 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+++|+.+. ...+.+|+|||++|++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 2 ~l~~~~l~~~y~~~~---------------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~--~G~i 64 (286)
T PRK13646 2 TIRFDNVSYTYQKGT---------------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT--TGTV 64 (286)
T ss_pred EEEEEEEEEEECCCC---------------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEE
Confidence 489999999996321 01246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc-------ccccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccc
Q 036088 162 TLNGEVLGS-------KLLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAM 231 (737)
Q Consensus 162 ~~~G~~~~~-------~~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 231 (737)
.++|+++.. ...++.+|||+|++ .+++ .||.||+.|+.... ..+..+..++++++++.+||. +..+
T Consensus 65 ~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~ 140 (286)
T PRK13646 65 TVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMS 140 (286)
T ss_pred EECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 999998743 13466789999986 5666 49999999875432 234555667899999999996 4554
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcc
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D 310 (737)
+. ++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||
T Consensus 141 ~~-----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~d 214 (286)
T PRK13646 141 QS-----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYAD 214 (286)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCC
Confidence 44 457999999999999999999999999999999999999999999999986 4899999999986 4788999
Q ss_pred eEEEecCCEEEeeCChhhHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~ 330 (737)
++++|++|++++.|+++++.
T Consensus 215 ri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 215 EVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999988764
No 89
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-43 Score=362.28 Aligned_cols=216 Identities=25% Similarity=0.443 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ .+.+|+++||++++||+++|+||||||||||+++|+|+.++. +|+|
T Consensus 5 ~l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i 62 (237)
T PRK11614 5 MLSFDKVSAHYG--------------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT--SGRI 62 (237)
T ss_pred EEEEEeEEEeeC--------------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CceE
Confidence 799999999985 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHc-CCcccccccccC
Q 036088 162 TLNGEVLGSK----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQL-GLRSAAMTIIGD 236 (737)
Q Consensus 162 ~~~G~~~~~~----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~ 236 (737)
.++|+++... ..++.++|++|++.+++.+||.||+.++.... ...+..++++++++.+ ++.+..++.
T Consensus 63 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~--- 134 (237)
T PRK11614 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR--- 134 (237)
T ss_pred EECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc---
Confidence 9999987542 13556899999999999999999998864321 1222345677778887 476555443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|+
T Consensus 135 --~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~ 211 (237)
T PRK11614 135 --AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLE 211 (237)
T ss_pred --hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEe
Confidence 4579999999999999999999999999999999999999999999999878999999999986 5889999999999
Q ss_pred CCEEEeeCChhhHH
Q 036088 317 NGQAVCSEAPSNLS 330 (737)
Q Consensus 317 ~G~iv~~G~~~~~~ 330 (737)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988763
No 90
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.2e-42 Score=362.82 Aligned_cols=218 Identities=21% Similarity=0.347 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---cc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR---LK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~---~~ 158 (737)
+|+++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|.+ .+
T Consensus 1 ~l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~ 60 (247)
T TIGR00972 1 AIEIENLNLFYG--------------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60 (247)
T ss_pred CEEEEEEEEEEC--------------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCc
Confidence 478999999995 2359999999999999999999999999999999999987431 28
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc----cc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR----SA 229 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~ 229 (737)
|+|.++|+++.. ...++.++|++|++.+++ +||.||+.+....+. ..+..+..++++++++.+||. +.
T Consensus 61 G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 137 (247)
T TIGR00972 61 GKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDR 137 (247)
T ss_pred eEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhH
Confidence 999999998753 123567899999999998 899999998754321 123445567789999999997 44
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhc
Q 036088 230 AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 230 ~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 309 (737)
.++ .++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++|
T Consensus 138 ~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~ 210 (247)
T TIGR00972 138 LHD-----SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARIS 210 (247)
T ss_pred hhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhC
Confidence 443 3457999999999999999999999999999999999999999999999987 489999999986 478899
Q ss_pred ceEEEecCCEEEeeCChhhH
Q 036088 310 DRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~~~ 329 (737)
|++++|++|++++.|+++++
T Consensus 211 d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 211 DRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred CEEEEEECCEEEEeCCHHHH
Confidence 99999999999999988775
No 91
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-43 Score=370.70 Aligned_cols=221 Identities=25% Similarity=0.411 Sum_probs=189.2
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
|.+|+++|+++.|+. ++.+|+|+||+|++||+++|+||||||||||+++|+|++++. +|
T Consensus 3 ~~~l~~~~l~~~~~~-------------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~--~G 61 (283)
T PRK13636 3 DYILKVEELNYNYSD-------------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS--SG 61 (283)
T ss_pred CceEEEEeEEEEeCC-------------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--cc
Confidence 347999999999952 245999999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCc-----ccccceEEEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 160 TVTLNGEVLGS-----KLLKIISAYVMQDDL-LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 160 ~I~~~G~~~~~-----~~~~~~~~yV~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
+|.++|+++.. ...++.+||++|++. .+...||+||+.+..... ..+..+..++++++++.+||.+..++.
T Consensus 62 ~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~ 138 (283)
T PRK13636 62 RILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP 138 (283)
T ss_pred EEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC
Confidence 99999998741 234567899999963 233469999998865422 234555567899999999998776555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 312 (737)
+ +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++
T Consensus 139 ~-----~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri 212 (283)
T PRK13636 139 T-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNV 212 (283)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEE
Confidence 4 469999999999999999999999999999999999999999999999875 899999999986 477899999
Q ss_pred EEecCCEEEeeCChhhHH
Q 036088 313 IFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~ 330 (737)
++|++|++++.|+++++.
T Consensus 213 ~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 213 FVMKEGRVILQGNPKEVF 230 (283)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 92
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=364.50 Aligned_cols=223 Identities=19% Similarity=0.313 Sum_probs=186.5
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---C
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---R 156 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~ 156 (737)
..+|+++|+++.|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+.++. +
T Consensus 10 ~~~l~~~~l~~~~~--------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~ 69 (258)
T PRK14268 10 QPQIKVENLNLWYG--------------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCR 69 (258)
T ss_pred ceeEEEeeeEEEeC--------------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCC
Confidence 34799999999985 245999999999999999999999999999999999998642 3
Q ss_pred cceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 157 LKGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 157 ~~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
.+|+|.++|+++.. ...++.++|++|++.+++ +||+||+.+..... ..+.....++++++++.+|+.....
T Consensus 70 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~ 145 (258)
T PRK14268 70 IEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETS 145 (258)
T ss_pred cceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchh
Confidence 58999999998742 124566899999998888 89999999875432 2234444567889999999842211
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
... +..++.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. .+.++||+
T Consensus 146 ~~~-~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~ 222 (258)
T PRK14268 146 DRL-KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDY 222 (258)
T ss_pred hhh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCE
Confidence 111 234457999999999999999999999999999999999999999999999965 799999999986 47789999
Q ss_pred EEEecCCEEEeeCChhhH
Q 036088 312 LIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~ 329 (737)
+++|++|++++.|+++++
T Consensus 223 i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 223 TGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999998776
No 93
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.4e-42 Score=376.13 Aligned_cols=235 Identities=26% Similarity=0.333 Sum_probs=193.8
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
+.+|+++||+++|+.+.+... .....+...+|+||||+|++||+++|+|+||||||||+++|+|++++. +|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~-------~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~--~G 76 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQW-------FWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT--DG 76 (331)
T ss_pred CceEEEeCeEEEECCCCcccc-------ccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC--Cc
Confidence 347999999999964211000 000112356999999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-ccc
Q 036088 160 TVTLNGEVLGSK------LLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAA 230 (737)
Q Consensus 160 ~I~~~G~~~~~~------~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 230 (737)
+|.++|+++... ..++.++||+|++ .+++.+||.||+.+...... ...++.+.+++++++++.+||. +..
T Consensus 77 ~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~ 155 (331)
T PRK15079 77 EVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLI 155 (331)
T ss_pred EEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHh
Confidence 999999998532 2356789999997 68889999999998654321 1245566677899999999995 334
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 309 (737)
+ ..+..|||||||||+|||||+.+|++||+||||+|||..++.++++.|+++.++ |.|+|++|||+. .+.++|
T Consensus 156 ~-----~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~ 229 (331)
T PRK15079 156 N-----RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHIS 229 (331)
T ss_pred c-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhC
Confidence 3 445679999999999999999999999999999999999999999999999875 899999999986 477899
Q ss_pred ceEEEecCCEEEeeCChhhHH
Q 036088 310 DRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~~~~ 330 (737)
|+|++|.+|++++.|+++++.
T Consensus 230 dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 230 DRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999988764
No 94
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=370.78 Aligned_cols=222 Identities=27% Similarity=0.416 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||++.|+... ...+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|
T Consensus 2 ~i~~~~l~~~~~~~~---------------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~--~G~i 64 (287)
T PRK13641 2 SIKFENVDYIYSPGT---------------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS--SGTI 64 (287)
T ss_pred EEEEEEEEEEcCCCC---------------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEE
Confidence 588999999996210 00246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc-------ccccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccc
Q 036088 162 TLNGEVLGS-------KLLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAM 231 (737)
Q Consensus 162 ~~~G~~~~~-------~~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 231 (737)
.++|+++.. ...++.++|++|++ .++ .+||.||+.++.... ....++..++++++++.+||. +..+
T Consensus 65 ~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~ 140 (287)
T PRK13641 65 TIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLIS 140 (287)
T ss_pred EECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhh
Confidence 999998742 12345689999996 455 479999999865432 234455667899999999996 4555
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
+.+ +.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+
T Consensus 141 ~~~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~ 214 (287)
T PRK13641 141 KSP-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADD 214 (287)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 544 469999999999999999999999999999999999999999999999877999999999986 57899999
Q ss_pred EEEecCCEEEeeCChhhHH
Q 036088 312 LIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~ 330 (737)
+++|++|++++.|+++++.
T Consensus 215 v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 215 VLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988764
No 95
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=361.58 Aligned_cols=217 Identities=24% Similarity=0.400 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|
T Consensus 2 ~l~~~~l~~~~~--------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i 59 (242)
T PRK11124 2 SIQLNGINCFYG--------------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTL 59 (242)
T ss_pred EEEEEeeEEEEC--------------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEE
Confidence 589999999995 24599999999999999999999999999999999999875 48999
Q ss_pred EECCEeCCc---------ccccceEEEEecCCCCCCCCCHHHHHHHh-hhhcCCCCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 162 TLNGEVLGS---------KLLKIISAYVMQDDLLYSMLTIEETLMFS-AEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 162 ~~~G~~~~~---------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
.++|+++.. ...++.++|++|++.+++.+||.||+.+. .... .....+..++++++++.+|+.+..+
T Consensus 60 ~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 136 (242)
T PRK11124 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYAD 136 (242)
T ss_pred EECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhh
Confidence 999998631 12355689999999999999999999753 2221 1233444567899999999987665
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
+.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+++|+
T Consensus 137 ~~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~ 210 (242)
T PRK11124 137 RFP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASR 210 (242)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 554 469999999999999999999999999999999999999999999999877999999999986 47789999
Q ss_pred EEEecCCEEEeeCChhhH
Q 036088 312 LIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~ 329 (737)
+++|++|++++.|+++++
T Consensus 211 i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 211 VVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999987654
No 96
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.6e-42 Score=364.01 Aligned_cols=219 Identities=28% Similarity=0.420 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 5 ~l~~~~l~~~~~--------------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i 62 (257)
T PRK10619 5 KLNVIDLHKRYG--------------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGSI 62 (257)
T ss_pred cEEEeeeEEEEC--------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEE
Confidence 589999999995 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc----------------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcC
Q 036088 162 TLNGEVLGS----------------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLG 225 (737)
Q Consensus 162 ~~~G~~~~~----------------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 225 (737)
.++|+++.. ...++.++||+|++.+++.+||+||+.++..... .....+.++++.++++.+|
T Consensus 63 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~g 140 (257)
T PRK10619 63 VVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVG 140 (257)
T ss_pred EECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcC
Confidence 999998742 1235668999999999999999999987542111 1234455678899999999
Q ss_pred Ccccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHH
Q 036088 226 LRSAA-MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHR 304 (737)
Q Consensus 226 L~~~~-~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 304 (737)
+.+.. +. .++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .
T Consensus 141 l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~ 214 (257)
T PRK10619 141 IDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-F 214 (257)
T ss_pred CChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H
Confidence 97643 33 34579999999999999999999999999999999999999999999999877999999999986 5
Q ss_pred HHhhcceEEEecCCEEEeeCChhhHH
Q 036088 305 ILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 305 i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
+.++||++++|++|++++.|+++++.
T Consensus 215 ~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 215 ARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 77889999999999999999887653
No 97
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-43 Score=349.14 Aligned_cols=217 Identities=29% Similarity=0.450 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+..|. ..++|++|||++++||+++|+||||||||||||+|+|+.++. +|+|
T Consensus 3 mL~v~~l~~~YG--------------------~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~--~G~I 60 (237)
T COG0410 3 MLEVENLSAGYG--------------------KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR--SGRI 60 (237)
T ss_pred ceeEEeEeeccc--------------------ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeeE
Confidence 789999999996 357999999999999999999999999999999999998744 8999
Q ss_pred EECCEeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcC-CcccccccccC
Q 036088 162 TLNGEVLGSK----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLG-LRSAAMTIIGD 236 (737)
Q Consensus 162 ~~~G~~~~~~----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~ 236 (737)
.++|++++.. ..+.-++||||...+|+.|||+|||..++..+.. +...+..++++.+.+. |.+.++++-|
T Consensus 61 ~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG- 135 (237)
T COG0410 61 IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG- 135 (237)
T ss_pred EECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-
Confidence 9999999753 3456689999999999999999999988654321 1122223777888774 5666655555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEe
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
.|||||||-++|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++-++.. .+.+++||.++|
T Consensus 136 ----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvl 210 (237)
T COG0410 136 ----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVL 210 (237)
T ss_pred ----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEE
Confidence 69999999999999999999999999999999999999999999999976 778999888865 589999999999
Q ss_pred cCCEEEeeCChhhHH
Q 036088 316 SNGQAVCSEAPSNLS 330 (737)
Q Consensus 316 ~~G~iv~~G~~~~~~ 330 (737)
.+|+++++|+.+++.
T Consensus 211 e~Griv~~G~~~eL~ 225 (237)
T COG0410 211 ENGRIVLSGTAAELL 225 (237)
T ss_pred eCCEEEEecCHHHHh
Confidence 999999999998875
No 98
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=363.41 Aligned_cols=213 Identities=27% Similarity=0.445 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|+++.|+ ++.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|
T Consensus 1 ml~~~~l~~~~~--------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i 58 (255)
T PRK11248 1 MLQISHLYADYG--------------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HGSI 58 (255)
T ss_pred CEEEEEEEEEeC--------------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEE
Confidence 478999999995 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
.++|+++.. .+..++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+ ..
T Consensus 59 ~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 128 (255)
T PRK11248 59 TLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQ 128 (255)
T ss_pred EECCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hh
Confidence 999998753 2335799999999999899999998865432 2334445678999999999987665544 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEec--CC
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLS--NG 318 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~--~G 318 (737)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.++||++++|+ +|
T Consensus 129 LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G 207 (255)
T PRK11248 129 LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPG 207 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCc
Confidence 999999999999999999999999999999999999999999999864 5899999999986 5788999999998 59
Q ss_pred EEEeeCChh
Q 036088 319 QAVCSEAPS 327 (737)
Q Consensus 319 ~iv~~G~~~ 327 (737)
+++..++.+
T Consensus 208 ~i~~~~~~~ 216 (255)
T PRK11248 208 RVVERLPLN 216 (255)
T ss_pred EEEEEecCC
Confidence 999877653
No 99
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-43 Score=356.14 Aligned_cols=209 Identities=30% Similarity=0.471 Sum_probs=180.9
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|+ .+.+|+|+||++++| +++|+||||||||||+++|+|++++. +|+|.
T Consensus 1 i~~~~~~~~~~--------------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~ 57 (211)
T cd03264 1 LQLENLTKRYG--------------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS--SGTIR 57 (211)
T ss_pred CEEEEEEEEEC--------------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC--ccEEE
Confidence 47899999985 245999999999999 99999999999999999999998754 89999
Q ss_pred ECCEeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 163 LNGEVLGSK--LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 163 ~~G~~~~~~--~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
++|+++... ..++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+ .
T Consensus 58 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 129 (211)
T cd03264 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----G 129 (211)
T ss_pred ECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----h
Confidence 999887532 34567899999999999999999999865443 1233444567899999999987766555 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+++|++++|++|++
T Consensus 130 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKL 207 (211)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEE
Confidence 6999999999999999999999999999999999999999999999986 589999999986 47789999999999999
Q ss_pred EeeC
Q 036088 321 VCSE 324 (737)
Q Consensus 321 v~~G 324 (737)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
No 100
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.3e-42 Score=356.61 Aligned_cols=210 Identities=25% Similarity=0.393 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|+++.|+. .+.+|+|+||++++||+++|+||||||||||+++|+|++++ .+|+|
T Consensus 1 ~l~~~~l~~~~~~-------------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i 59 (222)
T PRK10908 1 MIRFEHVSKAYLG-------------------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKI 59 (222)
T ss_pred CEEEEeeEEEecC-------------------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEE
Confidence 4789999999941 24699999999999999999999999999999999999874 48999
Q ss_pred EECCEeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLGSK------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~~------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|+++... ..++.++|++|++.+++.+||+||+.+..... .....+..++++++++.+|+.+..++.+
T Consensus 60 ~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 135 (222)
T PRK10908 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP- 135 (222)
T ss_pred EECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-
Confidence 9999987531 13567899999998888899999999865432 2334445567889999999987665544
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. ++.+.||++++|
T Consensus 136 ----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 210 (222)
T PRK10908 136 ----IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTL 210 (222)
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999999877899999999986 477889999999
Q ss_pred cCCEEE
Q 036088 316 SNGQAV 321 (737)
Q Consensus 316 ~~G~iv 321 (737)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
No 101
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.8e-40 Score=415.18 Aligned_cols=226 Identities=27% Similarity=0.434 Sum_probs=199.3
Q ss_pred CCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 036088 79 YPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLK 158 (737)
Q Consensus 79 ~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~ 158 (737)
....|+++||++.|+.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +
T Consensus 925 ~~~~L~I~nLsK~y~~~------------------~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt--s 984 (2272)
T TIGR01257 925 LVPGVCVKNLVKIFEPS------------------GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT--S 984 (2272)
T ss_pred CCceEEEEeEEEEecCC------------------CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC--c
Confidence 34579999999999521 356999999999999999999999999999999999998754 8
Q ss_pred eEEEECCEeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 159 GTVTLNGEVLGSK--LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 159 G~I~~~G~~~~~~--~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
|+|.++|+++... ..++.+|||+|++.+++.+||+|||.|.++++ +.+.++.+++++++++.+||.+.+++.++
T Consensus 985 G~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~- 1060 (2272)
T TIGR01257 985 GTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQ- 1060 (2272)
T ss_pred eEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-
Confidence 9999999998532 34667899999999999999999999987654 23344556789999999999887766554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.|||||||||+||+||+.+|++|||||||+|||+.+++.+++.|++++ +|+|||++||++. ++..++|||++|+
T Consensus 1061 ----~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~ 1134 (2272)
T TIGR01257 1061 ----DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIIS 1134 (2272)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 699999999999999999999999999999999999999999999995 5999999999986 5788999999999
Q ss_pred CCEEEeeCChhhHHHHHh
Q 036088 317 NGQAVCSEAPSNLSQFFG 334 (737)
Q Consensus 317 ~G~iv~~G~~~~~~~~f~ 334 (737)
+|++++.|+++++.+.|+
T Consensus 1135 ~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1135 QGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred CCEEEEecCHHHHHHhcC
Confidence 999999999999887665
No 102
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=361.93 Aligned_cols=225 Identities=24% Similarity=0.325 Sum_probs=188.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~ 158 (737)
.|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+
T Consensus 3 ~l~~~~l~~~~~--------------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~ 62 (250)
T PRK14247 3 KIEIRDLKVSFG--------------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVS 62 (250)
T ss_pred eEEEEeeEEEEC--------------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCc
Confidence 589999999985 245999999999999999999999999999999999998642 358
Q ss_pred eEEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 159 GTVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 159 G~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
|+|.++|+++.. ...++.++|++|++.+++.+||+||+.++...+.. .....+..++++++++.+||.+..+...
T Consensus 63 G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 140 (250)
T PRK14247 63 GEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRL- 140 (250)
T ss_pred eEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhh-
Confidence 999999998753 23456789999999888889999999987543211 1123445567899999999864211111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
+..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|+|++||++. .+.+.||++++|
T Consensus 141 ~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 218 (250)
T PRK14247 141 DAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFL 218 (250)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 234557999999999999999999999999999999999999999999999965 899999999986 477899999999
Q ss_pred cCCEEEeeCChhhHH
Q 036088 316 SNGQAVCSEAPSNLS 330 (737)
Q Consensus 316 ~~G~iv~~G~~~~~~ 330 (737)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 219 YKGQIVEWGPTREVF 233 (250)
T ss_pred ECCeEEEECCHHHHH
Confidence 999999999987763
No 103
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=362.58 Aligned_cols=225 Identities=20% Similarity=0.316 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~ 158 (737)
+|+++||+++|+ .+++|+|+||++++||+++|+||||||||||+++|+|++++. +.+
T Consensus 4 ~l~~~~l~~~~~--------------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~ 63 (253)
T PRK14267 4 AIETVNLRVYYG--------------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVE 63 (253)
T ss_pred eEEEEeEEEEeC--------------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCc
Confidence 689999999995 245999999999999999999999999999999999998753 358
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|+++.. ...++.++|++|++.+++.+||.||+.++...+.. ........++++++++.+|+.......
T Consensus 64 G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~ 142 (253)
T PRK14267 64 GEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDR 142 (253)
T ss_pred eEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhh
Confidence 999999998751 13456789999999999999999999987543210 112334456788999999985321111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+++
T Consensus 143 ~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~ 219 (253)
T PRK14267 143 L-NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVA 219 (253)
T ss_pred h-ccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEE
Confidence 1 234567999999999999999999999999999999999999999999999975 699999999986 4788999999
Q ss_pred EecCCEEEeeCChhhHH
Q 036088 314 FLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~ 330 (737)
+|++|++++.|+++++.
T Consensus 220 ~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 220 FLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999987763
No 104
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.3e-42 Score=356.24 Aligned_cols=211 Identities=26% Similarity=0.407 Sum_probs=178.5
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||+++|+.+. +.+++|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.
T Consensus 2 l~~~~v~~~~~~~~----------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~ 63 (221)
T TIGR02211 2 LKCENLGKRYQEGK----------------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT--SGEVL 63 (221)
T ss_pred EEEEeeeEEccCCC----------------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEE
Confidence 78999999996321 1246999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCccc------cc-ceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 163 LNGEVLGSKL------LK-IISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 163 ~~G~~~~~~~------~~-~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
++|+++.... .+ +.++||+|++.+++.+||+||+.+....+ .....+..+++.++++.+|+.+..++.+
T Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 64 FNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred ECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-
Confidence 9999875321 12 56899999999999999999999865432 1233344567889999999987665544
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + +.+|++++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~-~~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-A-KKLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hhcCEEEE
Confidence 469999999999999999999999999999999999999999999999864 8999999999863 4 55899999
Q ss_pred ecCCEEE
Q 036088 315 LSNGQAV 321 (737)
Q Consensus 315 L~~G~iv 321 (737)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999975
No 105
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=362.89 Aligned_cols=220 Identities=21% Similarity=0.310 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Cc
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RL 157 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~ 157 (737)
.+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|++++. +.
T Consensus 6 ~~l~~~~l~~~~~--------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~ 65 (254)
T PRK14273 6 AIIETENLNLFYT--------------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKI 65 (254)
T ss_pred ceEEEeeeEEEeC--------------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCC
Confidence 3799999999995 245999999999999999999999999999999999998753 35
Q ss_pred ceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc----c
Q 036088 158 KGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR----S 228 (737)
Q Consensus 158 ~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~ 228 (737)
+|+|.++|+++.. ...++.++|++|++.+++ +||+||+.+...... .......++++++.++.+++. +
T Consensus 66 ~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~ 142 (254)
T PRK14273 66 EGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKD 142 (254)
T ss_pred ceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHH
Confidence 8999999998742 134567899999988885 899999998754321 112334456788999999874 2
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhh
Q 036088 229 AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSL 308 (737)
Q Consensus 229 ~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 308 (737)
..++ .++.||||||||++|||+|+.+|++|||||||+|||+.++..+++.|+++++ +.|||+++|++. .+.++
T Consensus 143 ~~~~-----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~ 215 (254)
T PRK14273 143 KLNT-----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRI 215 (254)
T ss_pred HHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHh
Confidence 3333 4557999999999999999999999999999999999999999999999964 789999999986 47889
Q ss_pred cceEEEecCCEEEeeCChhhHH
Q 036088 309 LDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 309 ~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
+|++++|++|+++..|+++++.
T Consensus 216 ~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 216 SDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988763
No 106
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-42 Score=366.17 Aligned_cols=218 Identities=26% Similarity=0.392 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ ++.+|+|+||++++||+++|+|||||||||||++|+|++++. +|+|
T Consensus 1 ml~~~~l~~~~~--------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i 58 (271)
T PRK13638 1 MLATSDLWFRYQ--------------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ--KGAV 58 (271)
T ss_pred CeEEEEEEEEcC--------------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--ccEE
Confidence 488999999995 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc-----ccccceEEEEecCCCC-CCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLGS-----KLLKIISAYVMQDDLL-YSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~-----~~~~~~~~yV~Q~~~l-~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|+++.. ...++.++||+|++.+ +...|+.||+.+..... .....+..++++++++.+||.+..++.+
T Consensus 59 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 134 (271)
T PRK13638 59 LWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI- 134 (271)
T ss_pred EECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-
Confidence 999998742 1235668999999752 34458999998864332 2334445567889999999987766554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|
T Consensus 135 ----~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l 209 (271)
T PRK13638 135 ----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVL 209 (271)
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999999877999999999986 477899999999
Q ss_pred cCCEEEeeCChhhHH
Q 036088 316 SNGQAVCSEAPSNLS 330 (737)
Q Consensus 316 ~~G~iv~~G~~~~~~ 330 (737)
++|++++.|+++++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999987763
No 107
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=363.07 Aligned_cols=220 Identities=21% Similarity=0.397 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|+++.|+ .+++|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|
T Consensus 5 ~l~~~~l~~~~~--------------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i 62 (255)
T PRK11300 5 LLSVSGLMMRFG--------------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT--GGTI 62 (255)
T ss_pred eEEEeeEEEEEC--------------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC--cceE
Confidence 799999999985 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC----------CCC--cHHHHHHHHHHHHHHcC
Q 036088 162 TLNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP----------RSL--SKEKKRKRVDALIDQLG 225 (737)
Q Consensus 162 ~~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lg 225 (737)
.++|+++.... .+..++|++|++.+++.+||+||+.++...... ... ...+..++++++++.+|
T Consensus 63 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 142 (255)
T PRK11300 63 LLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVG 142 (255)
T ss_pred EECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCC
Confidence 99999875321 234578999999999999999999986431110 000 11233457889999999
Q ss_pred CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHH
Q 036088 226 LRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHR 304 (737)
Q Consensus 226 L~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~ 304 (737)
+.+..++.+ +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. +
T Consensus 143 l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~ 216 (255)
T PRK11300 143 LLEHANRQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-L 216 (255)
T ss_pred hhhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-H
Confidence 987665554 469999999999999999999999999999999999999999999999875 899999999986 5
Q ss_pred HHhhcceEEEecCCEEEeeCChhhH
Q 036088 305 ILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 305 i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
+.++||++++|++|++++.|+++++
T Consensus 217 ~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 217 VMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred HHHhCCEEEEEECCeEEecCCHHHH
Confidence 7889999999999999999988765
No 108
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.5e-42 Score=357.19 Aligned_cols=217 Identities=30% Similarity=0.422 Sum_probs=178.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+... ....+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|
T Consensus 1 ~l~~~~v~~~~~~~~----------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i 62 (228)
T cd03257 1 LLEVKNLSVSFPTGG----------------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT--SGSI 62 (228)
T ss_pred CeEEEeeeEeccCCC----------------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceE
Confidence 478999999995210 0136999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHH-HHHHHHHcCCc-cccc
Q 036088 162 TLNGEVLGSK------LLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKR-VDALIDQLGLR-SAAM 231 (737)
Q Consensus 162 ~~~G~~~~~~------~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~ 231 (737)
.++|+++... ..++.++|++|++ .+++.+||+||+.+....... .......+. ++++++.+++. +..+
T Consensus 63 ~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 140 (228)
T cd03257 63 IFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLN 140 (228)
T ss_pred EECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhh
Confidence 9999987532 3456789999998 567789999999886543211 111222222 36889999995 4454
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcc
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 310 (737)
.. +..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||
T Consensus 141 ~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d 214 (228)
T cd03257 141 RY-----PHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIAD 214 (228)
T ss_pred CC-----chhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcC
Confidence 44 4469999999999999999999999999999999999999999999999876 899999999986 4777999
Q ss_pred eEEEecCCEEEeeC
Q 036088 311 RLIFLSNGQAVCSE 324 (737)
Q Consensus 311 ~v~lL~~G~iv~~G 324 (737)
++++|++|+++..|
T Consensus 215 ~i~~l~~G~i~~~g 228 (228)
T cd03257 215 RVAVMYAGKIVEEG 228 (228)
T ss_pred eEEEEeCCEEEecC
Confidence 99999999998754
No 109
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-42 Score=373.67 Aligned_cols=228 Identities=25% Similarity=0.344 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC--Ccce
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ--RLKG 159 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~--~~~G 159 (737)
+|+++||++.|+.+. +...+|+||||+|++||++||+|+||||||||+++|+|++++. +.+|
T Consensus 3 ~L~v~~l~~~~~~~~----------------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G 66 (326)
T PRK11022 3 LLNVDKLSVHFGDES----------------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAE 66 (326)
T ss_pred eEEEeCeEEEECCCC----------------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcce
Confidence 589999999996321 1246999999999999999999999999999999999998632 3589
Q ss_pred EEEECCEeCCcc---cc----cceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccc
Q 036088 160 TVTLNGEVLGSK---LL----KIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAA 230 (737)
Q Consensus 160 ~I~~~G~~~~~~---~~----~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 230 (737)
+|.++|+++... .. ++.++||+|++ .+.+.+||.+++........ ....++.++++.++++.+||.+..
T Consensus 67 ~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~ 144 (326)
T PRK11022 67 KLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPA 144 (326)
T ss_pred EEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChH
Confidence 999999997532 11 23589999997 58899999999876554321 234556678899999999997422
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~ 309 (737)
+. . +..+++|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++++ .|.|+|++|||+. .+.+++
T Consensus 145 ~~-l-~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~a 221 (326)
T PRK11022 145 SR-L-DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAA 221 (326)
T ss_pred HH-H-hCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhC
Confidence 11 1 345668999999999999999999999999999999999999999999999986 4899999999986 477899
Q ss_pred ceEEEecCCEEEeeCChhhHH
Q 036088 310 DRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~~~~ 330 (737)
|+|++|++|++++.|+++++.
T Consensus 222 dri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 222 HKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred CEEEEEECCEEEEECCHHHHh
Confidence 999999999999999998874
No 110
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.1e-42 Score=359.75 Aligned_cols=219 Identities=25% Similarity=0.399 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|+++.|+ .+++|+|+||++++||+++|+|||||||||||++|+|++++. +|+|
T Consensus 2 ~i~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i 59 (242)
T TIGR03411 2 ILYLEGLSVSFD--------------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD--EGSV 59 (242)
T ss_pred eEEEEeeEEEcC--------------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCeE
Confidence 588999999985 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC-----CCCcHHHHHHHHHHHHHHcCCcccccc
Q 036088 162 TLNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP-----RSLSKEKKRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 162 ~~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~~ 232 (737)
.++|+++.... .++.++|++|++.+++.+||+||+.+....... .....++.+++++++++.+|+.+..++
T Consensus 60 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 139 (242)
T TIGR03411 60 LFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADR 139 (242)
T ss_pred EECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcC
Confidence 99999875321 234689999999999999999999886432100 001223445678999999999876655
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++
T Consensus 140 ~~-----~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i 212 (242)
T TIGR03411 140 LA-----GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKV 212 (242)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEE
Confidence 54 46999999999999999999999999999999999999999999999976 789999999986 578899999
Q ss_pred EEecCCEEEeeCChhhH
Q 036088 313 IFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~ 329 (737)
++|++|+++..|+++++
T Consensus 213 ~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 213 TVLHQGSVLAEGSLDQV 229 (242)
T ss_pred EEEECCeEEeeCCHHHH
Confidence 99999999999987765
No 111
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.8e-42 Score=360.14 Aligned_cols=223 Identities=26% Similarity=0.258 Sum_probs=184.1
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||+++|+ ++.+|+|+||++++||+++|+|||||||||||++|+|+.+..+.+|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~ 60 (243)
T TIGR01978 1 LKIKDLHVSVE--------------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTIL 60 (243)
T ss_pred CeEeeEEEEEC--------------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEE
Confidence 47899999995 2469999999999999999999999999999999999952124589999
Q ss_pred ECCEeCCcc---c-ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC----CCCcHHHHHHHHHHHHHHcCCcc-ccccc
Q 036088 163 LNGEVLGSK---L-LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP----RSLSKEKKRKRVDALIDQLGLRS-AAMTI 233 (737)
Q Consensus 163 ~~G~~~~~~---~-~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ 233 (737)
++|+++... . .+..++||+|++.+++.+|++|++.+....... ......+..++++++++.+||.+ ..++.
T Consensus 61 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 140 (243)
T TIGR01978 61 FKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS 140 (243)
T ss_pred ECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc
Confidence 999987532 1 233479999999999999999999886542211 01122334567899999999973 44443
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhh-cceE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSL-LDRL 312 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v 312 (737)
++ ..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+. ||++
T Consensus 141 ~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i 215 (243)
T TIGR01978 141 VN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYV 215 (243)
T ss_pred cc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeE
Confidence 32 249999999999999999999999999999999999999999999999877899999999986 46677 8999
Q ss_pred EEecCCEEEeeCChhhHH
Q 036088 313 IFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~ 330 (737)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 216 HVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEEeCCEEEEecCHHHhc
Confidence 999999999999887543
No 112
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.1e-42 Score=354.61 Aligned_cols=208 Identities=28% Similarity=0.430 Sum_probs=179.2
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+ .+.+|+++||++++||+++|+|||||||||||++|+|++++. +|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~ 58 (213)
T cd03262 1 IEIKNLHKSFG--------------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD--SGTII 58 (213)
T ss_pred CEEEEEEEEEC--------------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEE
Confidence 46899999985 245999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 163 LNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 163 ~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
++|+++.. ...++.++|++|++.+++.+||+||+.+...... .....+..++++++++.+|+.+..++.+
T Consensus 59 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 133 (213)
T cd03262 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP--- 133 (213)
T ss_pred ECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc---
Confidence 99998742 2345678999999999999999999988643111 2234445667899999999987665554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++
T Consensus 134 --~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~ 210 (213)
T cd03262 134 --AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD 210 (213)
T ss_pred --cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 469999999999999999999999999999999999999999999999877899999999986 47889999999999
Q ss_pred CEE
Q 036088 318 GQA 320 (737)
Q Consensus 318 G~i 320 (737)
|++
T Consensus 211 g~i 213 (213)
T cd03262 211 GRI 213 (213)
T ss_pred CcC
Confidence 974
No 113
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.6e-43 Score=410.34 Aligned_cols=222 Identities=24% Similarity=0.337 Sum_probs=184.9
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||++.|.. ++++|+|+|+++++|+.+||+||||||||||+++|+|++ |. +|+
T Consensus 348 ~~i~~~~vsf~~~~-------------------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~--~G~ 405 (588)
T PRK11174 348 VTIEAEDLEILSPD-------------------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY--QGS 405 (588)
T ss_pred ceEEEEeeEEeccC-------------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC--CcE
Confidence 36999999986642 246999999999999999999999999999999999998 54 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
|.+||+++.+ ..+|+.++||+|++.+|+. |++|||.++.....++++.+..+...+++.++.+ ++..||.+|+.
T Consensus 406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~l--p~G~dT~vge~ 482 (588)
T PRK11174 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLL--PQGLDTPIGDQ 482 (588)
T ss_pred EEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhc--ccccccccccC
Confidence 9999998864 4577889999999999997 9999999974211111111112223344555544 45578999854
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
+..||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++. +++|+|+++|+++ ..+.||+|++|++
T Consensus 483 -G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 -AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 56799999999999999999999999999999999999999999999986 4899999999985 4678999999999
Q ss_pred CEEEeeCChhhHHH
Q 036088 318 GQAVCSEAPSNLSQ 331 (737)
Q Consensus 318 G~iv~~G~~~~~~~ 331 (737)
|++++.|+++++.+
T Consensus 559 G~i~e~G~~~eL~~ 572 (588)
T PRK11174 559 GQIVQQGDYAELSQ 572 (588)
T ss_pred CeEeecCCHHHHHh
Confidence 99999999998854
No 114
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-42 Score=367.67 Aligned_cols=206 Identities=25% Similarity=0.382 Sum_probs=179.1
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc---c----ccceEEEEecCCCC
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK---L----LKIISAYVMQDDLL 186 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~---~----~~~~~~yV~Q~~~l 186 (737)
.+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.++|+++... . .++.++|++|++.+
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~--~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT--SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 456999999999999999999999999999999999998754 89999999987531 1 13568999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 036088 187 YSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLD 266 (737)
Q Consensus 187 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLD 266 (737)
++.+||+||+.+..... ........++++++++.+||.+..++.++ .||||||||++|||+|+.+|++||||
T Consensus 114 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 114 LPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred CCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999875432 12334455678999999999877766554 69999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 267 EPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 267 EPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
|||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999764 899999999986 578899999999999999999887763
No 115
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-42 Score=366.61 Aligned_cols=217 Identities=28% Similarity=0.421 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+. .+.+|+||||+|++||+++|+|||||||||||++|+|++++ .+|+|
T Consensus 1 ml~~~~l~~~~~~-------------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i 59 (274)
T PRK13644 1 MIRLENVSYSYPD-------------------GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKV 59 (274)
T ss_pred CEEEEEEEEEcCC-------------------CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceE
Confidence 4789999999952 24599999999999999999999999999999999999875 48999
Q ss_pred EECCEeCCc----ccccceEEEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 162 TLNGEVLGS----KLLKIISAYVMQDDL-LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 162 ~~~G~~~~~----~~~~~~~~yV~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
.++|.++.. ...++.++||+|++. .+...||.||+.+..... ..+..+..++++++++.+||.+..++.+
T Consensus 60 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 134 (274)
T PRK13644 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-- 134 (274)
T ss_pred EECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc--
Confidence 999998753 234567899999975 355679999998865432 2344555677899999999987766554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
+.||||||||++||+||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++.. + +.||++++|+
T Consensus 135 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~ 209 (274)
T PRK13644 135 ---KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMD 209 (274)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999998779999999999864 5 6799999999
Q ss_pred CCEEEeeCChhhH
Q 036088 317 NGQAVCSEAPSNL 329 (737)
Q Consensus 317 ~G~iv~~G~~~~~ 329 (737)
+|++++.|+++++
T Consensus 210 ~G~i~~~g~~~~~ 222 (274)
T PRK13644 210 RGKIVLEGEPENV 222 (274)
T ss_pred CCEEEEECCHHHH
Confidence 9999999998876
No 116
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-42 Score=367.01 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+.. .+.+|+|+|++|++||+++|+||||||||||+++|+|+.++. +|+|
T Consensus 5 ~l~~~~l~~~~~~~------------------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~--~G~i 64 (279)
T PRK13635 5 IIRVEHISFRYPDA------------------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE--AGTI 64 (279)
T ss_pred eEEEEEEEEEeCCC------------------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEE
Confidence 69999999999521 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc---cccceEEEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGSK---LLKIISAYVMQDD-LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~~---~~~~~~~yV~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.++|+++... ..++.++|++|++ .++...||.||+.+..... ..+.++..++++++++.+||.+..++.+
T Consensus 65 ~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~--- 138 (279)
T PRK13635 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP--- 138 (279)
T ss_pred EECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc---
Confidence 9999998642 3456789999997 3666789999999875432 2344555678999999999987776555
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEec
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
..||||||||++|||+|+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++.. +. .||++++|+
T Consensus 139 --~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~ 214 (279)
T PRK13635 139 --HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMN 214 (279)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEE
Confidence 469999999999999999999999999999999999999999999999876 8999999999864 54 699999999
Q ss_pred CCEEEeeCChhhHH
Q 036088 317 NGQAVCSEAPSNLS 330 (737)
Q Consensus 317 ~G~iv~~G~~~~~~ 330 (737)
+|++++.|+++++.
T Consensus 215 ~G~i~~~g~~~~~~ 228 (279)
T PRK13635 215 KGEILEEGTPEEIF 228 (279)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988764
No 117
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-42 Score=360.97 Aligned_cols=224 Identities=21% Similarity=0.331 Sum_probs=186.4
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--C-CC
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRIS--K-QR 156 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~-~~ 156 (737)
|..|+++||+++|+ .+.+|+|+||++++||+++|+|||||||||||++|+|+.. + .+
T Consensus 4 ~~~l~~~~l~~~~~--------------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~ 63 (253)
T PRK14242 4 PPKMEARGLSFFYG--------------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63 (253)
T ss_pred CcEEEEeeeEEEEC--------------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCC
Confidence 55799999999995 2459999999999999999999999999999999999864 1 23
Q ss_pred cceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 157 LKGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 157 ~~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
.+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.++...+. .......+++++++++.+|+.+...
T Consensus 64 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~ 140 (253)
T PRK14242 64 VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVK 140 (253)
T ss_pred CceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhh
Confidence 58999999998753 1235678999999988884 99999998754321 1123344567889999999854222
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
... +..++.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||+
T Consensus 141 ~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~ 217 (253)
T PRK14242 141 DRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDV 217 (253)
T ss_pred HHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCE
Confidence 222 234567999999999999999999999999999999999999999999999964 799999999986 47789999
Q ss_pred EEEecCCEEEeeCChhhH
Q 036088 312 LIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~ 329 (737)
+++|++|+++..|+++++
T Consensus 218 v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 218 TAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999988765
No 118
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.5e-42 Score=361.43 Aligned_cols=217 Identities=23% Similarity=0.373 Sum_probs=186.8
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.
T Consensus 1 i~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~ 58 (252)
T TIGR03005 1 VRFSDVTKRFG--------------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID--EGQIQ 58 (252)
T ss_pred CEEEEEEEEeC--------------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEE
Confidence 47899999995 245999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcc----------------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC
Q 036088 163 LNGEVLGSK----------------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL 226 (737)
Q Consensus 163 ~~G~~~~~~----------------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 226 (737)
++|+++... ..++.++|++|++.+++.+||.||+.++.... ......+..++++++++.+|+
T Consensus 59 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl 136 (252)
T TIGR03005 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGL 136 (252)
T ss_pred ECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCC
Confidence 999987421 23567899999999999999999998864211 122344456678999999999
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHH
Q 036088 227 RSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRI 305 (737)
Q Consensus 227 ~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 305 (737)
.+..+.. ++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. ++
T Consensus 137 ~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~ 210 (252)
T TIGR03005 137 ADKADHM-----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FA 210 (252)
T ss_pred hhHhhcC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HH
Confidence 8766544 4579999999999999999999999999999999999999999999999875 899999999986 47
Q ss_pred HhhcceEEEecCCEEEeeCChhhH
Q 036088 306 LSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 306 ~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
.+++|++++|++|++++.|+++++
T Consensus 211 ~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 211 REFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHH
Confidence 789999999999999999987765
No 119
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-42 Score=362.52 Aligned_cols=218 Identities=32% Similarity=0.453 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+ ++.+|+|+||++++|++++|+|||||||||||++|+|+.++ .+|+|
T Consensus 2 ~l~~~~l~~~~~--------------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i 59 (258)
T PRK13548 2 MLEARNLSVRLG--------------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEV 59 (258)
T ss_pred eEEEEeEEEEeC--------------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEE
Confidence 589999999995 24599999999999999999999999999999999999874 48999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
.++|.++.. ...++.++|++|++.+++.+||+||+.+..... ........++++++++.+||.+..++.+
T Consensus 60 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (258)
T PRK13548 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY---- 132 (258)
T ss_pred EECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc----
Confidence 999998753 223456899999998878889999998864321 1122334567889999999987666555
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCcEEEEEecCCcHHHHhhcce
Q 036088 239 HRGVSGGERRRVSIGVDII------HDPILLFLDEPISGLDSTSAFNVVKVLKQIA-KSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
..||||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.++||+
T Consensus 133 -~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 210 (258)
T PRK13548 133 -PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADR 210 (258)
T ss_pred -ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCE
Confidence 469999999999999999 5999999999999999999999999999998 56899999999986 47789999
Q ss_pred EEEecCCEEEeeCChhhHH
Q 036088 312 LIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~ 330 (737)
+++|++|++++.|+++++.
T Consensus 211 i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 211 IVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEEECCEEEeeCCHHHHh
Confidence 9999999999999877653
No 120
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-43 Score=384.30 Aligned_cols=222 Identities=26% Similarity=0.423 Sum_probs=190.8
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+|+||+++|.+ +++||+++||+|++||.+||+|+|||||||++|+|.++.+ .+|+
T Consensus 350 ~~I~F~dV~f~y~~-------------------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~ 407 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGP-------------------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGS 407 (591)
T ss_pred CcEEEEeeEEEeCC-------------------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCc
Confidence 35999999999973 3569999999999999999999999999999999999986 3899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
|++||+++.. ...|+.+||||||..||.+ ||.+||.|+..-...+++-+..++..+++.+..+ ++..+|.||+
T Consensus 408 I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l--~~GY~T~VGe- 483 (591)
T KOG0057|consen 408 ILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISRL--PDGYQTLVGE- 483 (591)
T ss_pred EEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhc--cccchhhHhh-
Confidence 9999999864 5688899999999999997 9999999987543222222223344455666554 5667899985
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
.+..|||||||||+||||+++||+|+++|||||.||..++.++++.+++.. .++|+|++.|+.+ ..+.||+|++|++
T Consensus 484 rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~--ll~~~DkI~~l~n 560 (591)
T KOG0057|consen 484 RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLD--LLKDFDKIIVLDN 560 (591)
T ss_pred cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecch--hHhcCCEEEEEEC
Confidence 455699999999999999999999999999999999999999999999944 5899999999975 6899999999999
Q ss_pred CEEEeeCChhhHHH
Q 036088 318 GQAVCSEAPSNLSQ 331 (737)
Q Consensus 318 G~iv~~G~~~~~~~ 331 (737)
|++...|+++++..
T Consensus 561 G~v~e~gth~ell~ 574 (591)
T KOG0057|consen 561 GTVKEYGTHSELLA 574 (591)
T ss_pred CeeEEeccHHHHhh
Confidence 99999999999875
No 121
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-42 Score=380.85 Aligned_cols=237 Identities=24% Similarity=0.328 Sum_probs=195.4
Q ss_pred eEEEEeEEEEEecCcccC-----CCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 036088 82 LLSFNNLSYSVKVGQKLL-----PDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR 156 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~-----~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~ 156 (737)
.|+++||++.|....... ..+......+.. +...+|+|+||+|++||+++|+|||||||||||++|+|+++|.
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~- 81 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKT-GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT- 81 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhc-CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC-
Confidence 699999999997532100 001111111222 2345899999999999999999999999999999999998754
Q ss_pred cceEEEECCEeCCccc-------ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc
Q 036088 157 LKGTVTLNGEVLGSKL-------LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA 229 (737)
Q Consensus 157 ~~G~I~~~G~~~~~~~-------~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 229 (737)
+|+|.++|+++.... .++.++||+|+..+++++||+||+.+....+ ..+..+..++++++++.+||.+.
T Consensus 82 -sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~ 157 (400)
T PRK10070 82 -RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENY 157 (400)
T ss_pred -CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChh
Confidence 899999999985321 1346899999999999999999999976543 23445556789999999999877
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhh
Q 036088 230 AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSL 308 (737)
Q Consensus 230 ~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~ 308 (737)
.++.+ +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++
T Consensus 158 ~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~ 231 (400)
T PRK10070 158 AHSYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRI 231 (400)
T ss_pred hhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHh
Confidence 65554 46999999999999999999999999999999999999999999999976 4899999999986 57899
Q ss_pred cceEEEecCCEEEeeCChhhHH
Q 036088 309 LDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 309 ~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
||++++|++|+++..|+++++.
T Consensus 232 ~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 232 GDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999988763
No 122
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.2e-42 Score=371.82 Aligned_cols=229 Identities=23% Similarity=0.357 Sum_probs=193.4
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-Ccce
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ-RLKG 159 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G 159 (737)
..|+++||++.|..+. +...+|+||||+|++||+++|+|+||||||||+++|+|++++. ..+|
T Consensus 11 ~~L~i~~l~~~~~~~~----------------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG 74 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD----------------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG 74 (330)
T ss_pred ceEEEeCeEEEEecCC----------------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCe
Confidence 3799999999996321 1356999999999999999999999999999999999998752 1389
Q ss_pred EEEECCEeCCcc---c---cc-ceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccc
Q 036088 160 TVTLNGEVLGSK---L---LK-IISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAA 230 (737)
Q Consensus 160 ~I~~~G~~~~~~---~---~~-~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 230 (737)
+|.++|+++... . .+ +.++||+|++ .+.+.+||.+++........ .....+..+++.++++.+||.+..
T Consensus 75 ~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~ 152 (330)
T PRK09473 75 SATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEAR 152 (330)
T ss_pred EEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChH
Confidence 999999998532 1 22 4689999997 68899999999987654321 234556667899999999997533
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 309 (737)
+. + +..+++|||||||||+|||||+.+|++||+||||+|||+.++.++++.|++++++ |.|+|++|||+. .+.+++
T Consensus 153 ~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~ 229 (330)
T PRK09473 153 KR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGIC 229 (330)
T ss_pred HH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhC
Confidence 22 2 3567789999999999999999999999999999999999999999999999875 899999999986 477899
Q ss_pred ceEEEecCCEEEeeCChhhHH
Q 036088 310 DRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~~~~ 330 (737)
|++++|++|++++.|+++++.
T Consensus 230 Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 230 DKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred CEEEEEECCEEEEECCHHHHH
Confidence 999999999999999998874
No 123
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=363.56 Aligned_cols=222 Identities=24% Similarity=0.407 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CcceE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ-RLKGT 160 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~ 160 (737)
+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|++++. ..+|+
T Consensus 4 ~l~~~nl~~~~~--------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~ 63 (262)
T PRK09984 4 IIRVEKLAKTFN--------------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSH 63 (262)
T ss_pred EEEEeeEEEEeC--------------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceE
Confidence 799999999995 246999999999999999999999999999999999998764 24699
Q ss_pred EEECCEeCCc--------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCC-----CCcHHHHHHHHHHHHHHcCCc
Q 036088 161 VTLNGEVLGS--------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPR-----SLSKEKKRKRVDALIDQLGLR 227 (737)
Q Consensus 161 I~~~G~~~~~--------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~ 227 (737)
|.++|+++.. ...++.++|++|++.+++.+||.||+.+......+. .....+.+++++++++.+|+.
T Consensus 64 i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 143 (262)
T PRK09984 64 IELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV 143 (262)
T ss_pred EEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH
Confidence 9999998743 123456899999999999999999998764211000 011233456889999999998
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHH
Q 036088 228 SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRIL 306 (737)
Q Consensus 228 ~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 306 (737)
+..++.+ ..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.
T Consensus 144 ~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~ 217 (262)
T PRK09984 144 HFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YAL 217 (262)
T ss_pred HHHhCCc-----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH
Confidence 7666554 469999999999999999999999999999999999999999999999864 899999999986 478
Q ss_pred hhcceEEEecCCEEEeeCChhhH
Q 036088 307 SLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 307 ~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
++||++++|++|++++.|+++++
T Consensus 218 ~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 218 RYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HhCCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999987654
No 124
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-42 Score=359.25 Aligned_cols=224 Identities=20% Similarity=0.307 Sum_probs=185.8
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC---CCCCc
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRI---SKQRL 157 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~---~~~~~ 157 (737)
++|+++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+.
T Consensus 2 ~~l~~~~~~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~ 61 (250)
T PRK14245 2 VKIDARDVNFWYG--------------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRL 61 (250)
T ss_pred cEEEEEEEEEEEC--------------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCC
Confidence 4789999999995 245999999999999999999999999999999999973 32224
Q ss_pred ceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc
Q 036088 158 KGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 158 ~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 232 (737)
+|+|.++|+++.. ...++.++|++|++.+++ .||.||+.+....+. ........+.++++++.+||.+....
T Consensus 62 ~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 138 (250)
T PRK14245 62 EGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKD 138 (250)
T ss_pred ceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhh
Confidence 8999999998753 134566899999998887 599999988754321 11223345678899999998643222
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.. +..+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++ +++|||++||++. .+.+.||++
T Consensus 139 ~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v 215 (250)
T PRK14245 139 KL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKT 215 (250)
T ss_pred hh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEE
Confidence 22 23456799999999999999999999999999999999999999999999995 4799999999986 478899999
Q ss_pred EEecCCEEEeeCChhhHH
Q 036088 313 IFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~ 330 (737)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 216 AFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999988774
No 125
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-42 Score=362.19 Aligned_cols=220 Identities=21% Similarity=0.358 Sum_probs=188.0
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
+.+|+++|+++.|+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|
T Consensus 5 ~~~l~i~~l~~~~~~~------------------~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~--~G 64 (269)
T PRK13648 5 NSIIVFKNVSFQYQSD------------------ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK--SG 64 (269)
T ss_pred CceEEEEEEEEEcCCC------------------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ce
Confidence 3479999999999631 245999999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCc---ccccceEEEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 160 TVTLNGEVLGS---KLLKIISAYVMQDDL-LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 160 ~I~~~G~~~~~---~~~~~~~~yV~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
+|.++|+++.. ...++.++|++|++. +++..|+++|+.+..... ........++++++++.+|+.+..++.+
T Consensus 65 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 140 (269)
T PRK13648 65 EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP- 140 (269)
T ss_pred EEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-
Confidence 99999998753 234567899999974 677789999998875432 2234445567889999999987665544
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .+|++++
T Consensus 141 ----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~ 214 (269)
T PRK13648 141 ----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIV 214 (269)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEE
Confidence 479999999999999999999999999999999999999999999999765 8999999999864 55 4999999
Q ss_pred ecCCEEEeeCChhhH
Q 036088 315 LSNGQAVCSEAPSNL 329 (737)
Q Consensus 315 L~~G~iv~~G~~~~~ 329 (737)
|++|++++.|+++++
T Consensus 215 l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 215 MNKGTVYKEGTPTEI 229 (269)
T ss_pred EECCEEEEecCHHHH
Confidence 999999999998876
No 126
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-42 Score=364.34 Aligned_cols=221 Identities=24% Similarity=0.412 Sum_probs=188.6
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
..+|+++|+++.|+.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|
T Consensus 5 ~~~l~~~nl~~~~~~~------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G 64 (271)
T PRK13632 5 SVMIKVENVSFSYPNS------------------ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ--SG 64 (271)
T ss_pred ceEEEEEeEEEEcCCC------------------CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--Cc
Confidence 3479999999999521 256999999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCc---ccccceEEEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 160 TVTLNGEVLGS---KLLKIISAYVMQDDL-LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 160 ~I~~~G~~~~~---~~~~~~~~yV~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
+|.++|+++.. ...++.++|++|++. .++.+||+||+.+..... .....+.+++++++++.+||.+..++.+
T Consensus 65 ~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 140 (271)
T PRK13632 65 EIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP- 140 (271)
T ss_pred eEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-
Confidence 99999999853 234667899999973 666789999999865422 2334445667899999999987766554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|++.. + ..||++++
T Consensus 141 ----~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~ 214 (271)
T PRK13632 141 ----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIV 214 (271)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEE
Confidence 469999999999999999999999999999999999999999999999876 5899999999864 4 57999999
Q ss_pred ecCCEEEeeCChhhHH
Q 036088 315 LSNGQAVCSEAPSNLS 330 (737)
Q Consensus 315 L~~G~iv~~G~~~~~~ 330 (737)
|++|+++..|+++++.
T Consensus 215 l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 215 FSEGKLIAQGKPKEIL 230 (271)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999887653
No 127
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.5e-42 Score=353.24 Aligned_cols=207 Identities=32% Similarity=0.506 Sum_probs=174.8
Q ss_pred EEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEE
Q 036088 84 SFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTL 163 (737)
Q Consensus 84 ~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~ 163 (737)
+++|+++.|+.. .+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.+
T Consensus 1 ~~~~l~~~~~~~------------------~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~ 60 (211)
T cd03225 1 ELKNLSFSYPDG------------------ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT--SGEVLV 60 (211)
T ss_pred CceeEEEecCCC------------------CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEE
Confidence 367888888521 146999999999999999999999999999999999998754 899999
Q ss_pred CCEeCCc---ccccceEEEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 164 NGEVLGS---KLLKIISAYVMQDDL-LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 164 ~G~~~~~---~~~~~~~~yV~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
+|+++.. ...++.++|++|++. .++.+||+||+.+..... .......+++++++++.+||.+..++.+
T Consensus 61 ~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 132 (211)
T cd03225 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP----- 132 (211)
T ss_pred CCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9998753 234567899999974 356789999998865432 1233444567899999999987665544
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 133 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 133 FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 469999999999999999999999999999999999999999999999877999999999986 5778899999999885
No 128
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-42 Score=364.28 Aligned_cols=221 Identities=24% Similarity=0.391 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+++|+... ...+++|+|+||++++||+++|+|||||||||||++|+|++++. +|+|
T Consensus 2 ~l~~~~l~~~~~~~~---------------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~--~G~i 64 (280)
T PRK13649 2 GINLQNVSYTYQAGT---------------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT--QGSV 64 (280)
T ss_pred eEEEEEEEEEcCCCC---------------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEE
Confidence 488999999996321 00146999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc-------ccccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-ccc
Q 036088 162 TLNGEVLGS-------KLLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-AAM 231 (737)
Q Consensus 162 ~~~G~~~~~-------~~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~ 231 (737)
.++|+++.. ...++.++|++|++ .+++ .||+||+.+..... ....++..++++++++.+||.+ ..+
T Consensus 65 ~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~ 140 (280)
T PRK13649 65 RVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFE 140 (280)
T ss_pred EECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 999998753 12456689999996 4565 59999998865332 1234445567889999999973 444
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
+. ++.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+
T Consensus 141 ~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~ 214 (280)
T PRK13649 141 KN-----PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADF 214 (280)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCE
Confidence 44 4469999999999999999999999999999999999999999999999877899999999986 57789999
Q ss_pred EEEecCCEEEeeCChhhH
Q 036088 312 LIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~ 329 (737)
+++|++|++++.|+++++
T Consensus 215 i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 215 VYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999998776
No 129
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-42 Score=361.22 Aligned_cols=208 Identities=22% Similarity=0.364 Sum_probs=181.8
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+
T Consensus 11 ~~l~i~~l~~~~~--------------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~--~G~ 68 (257)
T PRK11247 11 TPLLLNAVSKRYG--------------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS--AGE 68 (257)
T ss_pred CcEEEEEEEEEEC--------------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeE
Confidence 3699999999995 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
|.++|.++. ..++.++|++|++.+++.+||+||+.+... . ..+++++++++.+||.+..+..+ .
T Consensus 69 i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~~~-----~ 132 (257)
T PRK11247 69 LLAGTAPLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------G--QWRDAALQALAAVGLADRANEWP-----A 132 (257)
T ss_pred EEECCEEHH--HhhCceEEEecCccCCCCCcHHHHHHhccc-------c--hHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 999998764 345678999999999998999999987531 0 12456889999999987665544 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||++++|++|+
T Consensus 133 ~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~ 211 (257)
T PRK11247 133 ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGK 211 (257)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999865 4899999999986 4778999999999999
Q ss_pred EEeeCChh
Q 036088 320 AVCSEAPS 327 (737)
Q Consensus 320 iv~~G~~~ 327 (737)
+++.|+.+
T Consensus 212 i~~~~~~~ 219 (257)
T PRK11247 212 IGLDLTVD 219 (257)
T ss_pred EEeecccc
Confidence 99887653
No 130
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-42 Score=364.45 Aligned_cols=219 Identities=26% Similarity=0.425 Sum_probs=188.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+. .+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 3 ~l~~~~l~~~~~~-------------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~--~G~i 61 (277)
T PRK13652 3 LIETRDLCYSYSG-------------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT--SGSV 61 (277)
T ss_pred eEEEEEEEEEeCC-------------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEE
Confidence 5899999999952 235999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDL-LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.++|+++.. ...++.++||+|++. .+...||.||+.+..... ........++++++++.+||.+..++.+
T Consensus 62 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 135 (277)
T PRK13652 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP--- 135 (277)
T ss_pred EECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc---
Confidence 999998753 234566899999963 233579999998765421 2344555678899999999987766554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEec
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
+.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+
T Consensus 136 --~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~ 212 (277)
T PRK13652 136 --HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMD 212 (277)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999999875 899999999986 5788999999999
Q ss_pred CCEEEeeCChhhHH
Q 036088 317 NGQAVCSEAPSNLS 330 (737)
Q Consensus 317 ~G~iv~~G~~~~~~ 330 (737)
+|++++.|+++++.
T Consensus 213 ~G~i~~~g~~~~~~ 226 (277)
T PRK13652 213 KGRIVAYGTVEEIF 226 (277)
T ss_pred CCeEEEECCHHHHh
Confidence 99999999988774
No 131
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-43 Score=416.15 Aligned_cols=226 Identities=25% Similarity=0.394 Sum_probs=194.5
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
...++|+||+|+|+.+. +..||+|+|+.|++|+.+||+|||||||||++++|.++++|. +|
T Consensus 348 ~g~ief~nV~FsYPsRp-----------------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~--~G 408 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRP-----------------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT--SG 408 (1228)
T ss_pred ccceEEEEEEecCCCCC-----------------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--Cc
Confidence 44799999999998542 357999999999999999999999999999999999998855 89
Q ss_pred EEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 160 TVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 160 ~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
+|++||.++.. +.+|..+|.|.|+|.||.. ||+|||.|+.......++.++.+.+.+.+.+..| .+..||.+|+
T Consensus 409 ~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~l--p~g~~T~vge 485 (1228)
T KOG0055|consen 409 EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKPDATREEIEEAAKAANAHDFILKL--PDGYDTLVGE 485 (1228)
T ss_pred eEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhh--HHhhcccccC
Confidence 99999999865 4567889999999999985 9999999986443222233334444566666655 6678999997
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
..+ +||||||||++|||||+.+|+|||||||||+||++++..+.+.|.+.. .|+|.|+++|+++. .+.+|+|++|+
T Consensus 486 ~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt--IrnaD~I~v~~ 561 (1228)
T KOG0055|consen 486 RGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST--IRNADKIAVME 561 (1228)
T ss_pred CCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh--hhccCEEEEEE
Confidence 555 499999999999999999999999999999999999999999998876 49999999999874 56699999999
Q ss_pred CCEEEeeCChhhHHH
Q 036088 317 NGQAVCSEAPSNLSQ 331 (737)
Q Consensus 317 ~G~iv~~G~~~~~~~ 331 (737)
+|++++.|+++|+..
T Consensus 562 ~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 562 EGKIVEQGTHDELIA 576 (1228)
T ss_pred CCEEEEecCHHHHHh
Confidence 999999999999875
No 132
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-42 Score=361.40 Aligned_cols=220 Identities=25% Similarity=0.399 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|++++ .+|+|
T Consensus 2 ~l~~~~l~~~~~--------------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i 59 (255)
T PRK11231 2 TLRTENLTVGYG--------------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTV 59 (255)
T ss_pred EEEEEeEEEEEC--------------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEE
Confidence 589999999995 24699999999999999999999999999999999999875 48999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.++|+++.. ...++.++|++|+..+++.+||.||+.++...... .........++++++++.+||.+..++.+
T Consensus 60 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 136 (255)
T PRK11231 60 FLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL--- 136 (255)
T ss_pred EECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc---
Confidence 999998743 23445689999999888889999999886321000 01112334567889999999987666554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
+.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++
T Consensus 137 --~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~ 213 (255)
T PRK11231 137 --TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN 213 (255)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999877999999999986 58899999999999
Q ss_pred CEEEeeCChhhH
Q 036088 318 GQAVCSEAPSNL 329 (737)
Q Consensus 318 G~iv~~G~~~~~ 329 (737)
|+++..|+++++
T Consensus 214 G~i~~~~~~~~~ 225 (255)
T PRK11231 214 GHVMAQGTPEEV 225 (255)
T ss_pred CeEEEEcCHHHh
Confidence 999999987765
No 133
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-42 Score=363.03 Aligned_cols=221 Identities=26% Similarity=0.400 Sum_probs=187.5
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+
T Consensus 10 ~~l~i~~l~~~~~--------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~ 67 (265)
T PRK10575 10 TTFALRNVSFRVP--------------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS--EGE 67 (265)
T ss_pred ceEEEeeEEEEEC--------------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCE
Confidence 4799999999995 246999999999999999999999999999999999998744 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
|.++|+++.. ...++.++|++|+..+++.+||.||+.+....... .........++++++++.+|+.+..++.++
T Consensus 68 i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 146 (265)
T PRK10575 68 ILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD- 146 (265)
T ss_pred EEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-
Confidence 9999998743 23455689999998888889999999876421100 001122345678999999999876665554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEe
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. ++.+.||++++|
T Consensus 147 ----~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l 221 (265)
T PRK10575 147 ----SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVAL 221 (265)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 69999999999999999999999999999999999999999999999865 899999999986 578899999999
Q ss_pred cCCEEEeeCChhhH
Q 036088 316 SNGQAVCSEAPSNL 329 (737)
Q Consensus 316 ~~G~iv~~G~~~~~ 329 (737)
++|+++..|+++++
T Consensus 222 ~~G~i~~~~~~~~~ 235 (265)
T PRK10575 222 RGGEMIAQGTPAEL 235 (265)
T ss_pred ECCeEEEecCHHHh
Confidence 99999999987765
No 134
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-42 Score=362.65 Aligned_cols=218 Identities=29% Similarity=0.451 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+. .+.+|+|+||+|++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 1 ~l~~~~l~~~~~~-------------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i 59 (275)
T PRK13639 1 ILETRDLKYSYPD-------------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT--SGEV 59 (275)
T ss_pred CEEEEEEEEEeCC-------------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ccEE
Confidence 4789999999952 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc-----cccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 162 TLNGEVLGSK-----LLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 162 ~~~G~~~~~~-----~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
.++|+++... ..++.++|++|++ .+++ .||.||+.+..... .....+..+++.++++.+||.+..++.+
T Consensus 60 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 135 (275)
T PRK13639 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP 135 (275)
T ss_pred EECCEECccccchHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh
Confidence 9999987421 2356789999996 3454 69999998864321 2334455677899999999987776655
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++
T Consensus 136 -----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~ 209 (275)
T PRK13639 136 -----HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYV 209 (275)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999999877999999999976 47789999999
Q ss_pred ecCCEEEeeCChhhHH
Q 036088 315 LSNGQAVCSEAPSNLS 330 (737)
Q Consensus 315 L~~G~iv~~G~~~~~~ 330 (737)
|++|++++.|+++++.
T Consensus 210 l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 210 MSDGKIIKEGTPKEVF 225 (275)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
No 135
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-42 Score=370.31 Aligned_cols=230 Identities=23% Similarity=0.315 Sum_probs=192.8
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||++.|+...+.+ ...+.+.+|+||||+|++||++||+|+||||||||+++|+|++++ .+|+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~----------~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~ 71 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLF----------KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGE 71 (327)
T ss_pred ceEEEeeeEEEEcCCCCcc----------ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcE
Confidence 3799999999996421100 001135699999999999999999999999999999999999875 4899
Q ss_pred EEECCEeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-ccc
Q 036088 161 VTLNGEVLGSK------LLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-AAM 231 (737)
Q Consensus 161 I~~~G~~~~~~------~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~ 231 (737)
|.++|+++... ..++.++||+|++ .+.+.+||.+++........ ...+.+.++++.++++.+||.+ ..+
T Consensus 72 i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~ 149 (327)
T PRK11308 72 LYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYD 149 (327)
T ss_pred EEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhc
Confidence 99999998532 2456789999997 68999999999987654321 2345566788999999999963 444
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcc
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 310 (737)
+ .++.|||||||||+|||||+.+|++||+||||+|||..++.+|+++|+++.++ |.|+|++|||+. .+.++||
T Consensus 150 ~-----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~ad 223 (327)
T PRK11308 150 R-----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIAD 223 (327)
T ss_pred C-----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCC
Confidence 3 45679999999999999999999999999999999999999999999999874 999999999986 4778999
Q ss_pred eEEEecCCEEEeeCChhhHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~ 330 (737)
+|++|++|++++.|+++++.
T Consensus 224 rv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 224 EVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEEEECCEEEEECCHHHHh
Confidence 99999999999999988774
No 136
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-42 Score=371.46 Aligned_cols=230 Identities=20% Similarity=0.290 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCcce
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK--QRLKG 159 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~--~~~~G 159 (737)
+|+++||++.|+.+. +.+.+|+||||+|++||+++|+|+||||||||+++|+|++++ .+.+|
T Consensus 3 ~L~v~~l~~~y~~~~----------------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G 66 (330)
T PRK15093 3 LLDIRNLTIEFKTSD----------------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTAD 66 (330)
T ss_pred eEEEeeeEEEEeCCC----------------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcce
Confidence 689999999996321 135699999999999999999999999999999999999863 24589
Q ss_pred EEEECCEeCCcc---c----ccceEEEEecCCC--CCCCCCHHHHHHHhhhhcCCCC---CcHHHHHHHHHHHHHHcCCc
Q 036088 160 TVTLNGEVLGSK---L----LKIISAYVMQDDL--LYSMLTIEETLMFSAEFRLPRS---LSKEKKRKRVDALIDQLGLR 227 (737)
Q Consensus 160 ~I~~~G~~~~~~---~----~~~~~~yV~Q~~~--l~~~lTV~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~ 227 (737)
+|.++|+++... . .++.++||+|++. +.+.+||.+++.+......... ....+.++++.++++.+||.
T Consensus 67 ~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~ 146 (330)
T PRK15093 67 RMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIK 146 (330)
T ss_pred EEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCC
Confidence 999999987531 1 1246899999975 6788999999976432110000 11234456889999999997
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHH
Q 036088 228 SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRIL 306 (737)
Q Consensus 228 ~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 306 (737)
+..+. -+..+..|||||||||+||+||+.+|+||||||||+|||+.++.++++.|+++.++ |.|||++|||+. .+.
T Consensus 147 ~~~~~--~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~ 223 (330)
T PRK15093 147 DHKDA--MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLS 223 (330)
T ss_pred ChHHH--HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHH
Confidence 53211 13456689999999999999999999999999999999999999999999999875 899999999986 578
Q ss_pred hhcceEEEecCCEEEeeCChhhHH
Q 036088 307 SLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 307 ~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
++||+|++|++|++++.|+++++.
T Consensus 224 ~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 224 QWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred HhCCEEEEEECCEEEEECCHHHHH
Confidence 899999999999999999988764
No 137
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-42 Score=357.54 Aligned_cols=224 Identities=23% Similarity=0.333 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCcceE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK-QRLKGT 160 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~-~~~~G~ 160 (737)
+++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+.+|+
T Consensus 2 ~~~~~~l~~~~~--------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~ 61 (246)
T PRK14269 2 IAKTTNLNLFYG--------------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL 61 (246)
T ss_pred ceeeeeeEEEEC--------------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceE
Confidence 578999999995 24699999999999999999999999999999999999753 346899
Q ss_pred EEECCEeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 161 VTLNGEVLGSK---LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 161 I~~~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
|.++|+++... ..++.++|++|++.+++ .||+||+.++...+... ......+++++++++.++|.+...... +.
T Consensus 62 i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 138 (246)
T PRK14269 62 VEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKL-KQ 138 (246)
T ss_pred EEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHh-cC
Confidence 99999988542 34567899999998887 59999999875432110 012344567889999999953221222 23
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
.++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||++. ++.+.+|++++|++
T Consensus 139 ~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~ 216 (246)
T PRK14269 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL 216 (246)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC
Confidence 4567999999999999999999999999999999999999999999999965 899999999986 47889999999999
Q ss_pred CEEEeeCChhhHH
Q 036088 318 GQAVCSEAPSNLS 330 (737)
Q Consensus 318 G~iv~~G~~~~~~ 330 (737)
|++++.|+++++.
T Consensus 217 G~i~~~g~~~~~~ 229 (246)
T PRK14269 217 GELIEFGESKEFF 229 (246)
T ss_pred CEEEEECCHHHHH
Confidence 9999999887753
No 138
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=6.7e-43 Score=406.26 Aligned_cols=223 Identities=30% Similarity=0.418 Sum_probs=193.0
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+|+|++|.|+. ++++|+|+||++++||.+||+||||||||||+++|.|++++. +|+
T Consensus 327 ~~I~f~~vsf~y~~-------------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~--~G~ 385 (567)
T COG1132 327 GSIEFENVSFSYPG-------------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT--SGE 385 (567)
T ss_pred CeEEEEEEEEEcCC-------------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCe
Confidence 35999999999973 357999999999999999999999999999999999998854 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
|.+||++++. ..+|+.++||+|++.+|.. ||+|||.++.....++++.++.+.+.+++.++.+ ++..||.+| +
T Consensus 386 I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vg-e 461 (567)
T COG1132 386 ILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVG-E 461 (567)
T ss_pred EEECCEehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceec-C
Confidence 9999999865 4578889999999999995 9999999986432222233333444566777766 567899998 5
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
.+..||||||||++||||++++|+||+||||||+||+.++..|.+.++++. +++|+|+++|+++. .+.||+|++|++
T Consensus 462 ~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl~~ 538 (567)
T COG1132 462 RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVLDN 538 (567)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEEEC
Confidence 667799999999999999999999999999999999999999999999887 57899999999864 556999999999
Q ss_pred CEEEeeCChhhHHH
Q 036088 318 GQAVCSEAPSNLSQ 331 (737)
Q Consensus 318 G~iv~~G~~~~~~~ 331 (737)
|++++.|+++++..
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999865
No 139
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.6e-42 Score=353.72 Aligned_cols=209 Identities=25% Similarity=0.440 Sum_probs=173.9
Q ss_pred EEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEEC
Q 036088 85 FNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLN 164 (737)
Q Consensus 85 ~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~ 164 (737)
++||+++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++
T Consensus 2 ~~~l~~~~~--------------------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~ 59 (213)
T cd03235 2 VEDLTVSYG--------------------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT--SGSIRVF 59 (213)
T ss_pred cccceeEEC--------------------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCEEEEC
Confidence 578888885 245999999999999999999999999999999999998754 8999999
Q ss_pred CEeCCcccccceEEEEecCCCCC--CCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 165 GEVLGSKLLKIISAYVMQDDLLY--SMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 165 G~~~~~~~~~~~~~yV~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
|+++. ..++.++||+|++.+. ..+||+||+.+....... .........++++++++.+|+.+..++.+ ..
T Consensus 60 g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 132 (213)
T cd03235 60 GKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GE 132 (213)
T ss_pred CccHH--HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----cc
Confidence 98764 3456789999998763 337999999886432110 00112334567899999999987665554 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAV 321 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 321 (737)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++| ++
T Consensus 133 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~ 210 (213)
T cd03235 133 LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VV 210 (213)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-Ee
Confidence 9999999999999999999999999999999999999999999999877899999999986 578899999999876 55
Q ss_pred eeC
Q 036088 322 CSE 324 (737)
Q Consensus 322 ~~G 324 (737)
+.|
T Consensus 211 ~~g 213 (213)
T cd03235 211 ASG 213 (213)
T ss_pred ecC
Confidence 554
No 140
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=7.2e-42 Score=352.53 Aligned_cols=214 Identities=29% Similarity=0.409 Sum_probs=181.5
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+... ..+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+
T Consensus 5 ~~l~~~~l~~~~~~~~----------------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~--~G~ 66 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE----------------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGE 66 (228)
T ss_pred ceEEEeeeEEEccCCC----------------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--Cee
Confidence 4799999999996320 0135999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCccc------c-cceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 161 VTLNGEVLGSKL------L-KIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 161 I~~~G~~~~~~~------~-~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|.++|+++.... . ++.++|++|++.+++.+||.||+.+....+ .....+.+++++++++.+|+.+..++.
T Consensus 67 i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~ 143 (228)
T PRK10584 67 VSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL 143 (228)
T ss_pred EEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC
Confidence 999999875321 1 246899999999999999999998865332 123345567899999999998766555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 312 (737)
+ ..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++.. + +.+|++
T Consensus 144 ~-----~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~i 216 (228)
T PRK10584 144 P-----AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDRR 216 (228)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEE
Confidence 4 469999999999999999999999999999999999999999999999765 8999999999863 4 569999
Q ss_pred EEecCCEEEe
Q 036088 313 IFLSNGQAVC 322 (737)
Q Consensus 313 ~lL~~G~iv~ 322 (737)
++|++|++++
T Consensus 217 ~~l~~g~i~~ 226 (228)
T PRK10584 217 LRLVNGQLQE 226 (228)
T ss_pred EEEECCEEEe
Confidence 9999999875
No 141
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-42 Score=358.98 Aligned_cols=225 Identities=23% Similarity=0.354 Sum_probs=187.2
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC---CC
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK---QR 156 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~---~~ 156 (737)
...|+++|+++.|+ .+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+
T Consensus 11 ~~~l~~~~l~~~~~--------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p 70 (260)
T PRK10744 11 PSKIQVRNLNFYYG--------------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQR 70 (260)
T ss_pred CceEEEEEEEEEeC--------------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCC
Confidence 44799999999995 24599999999999999999999999999999999999852 13
Q ss_pred cceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 157 LKGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 157 ~~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
.+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+...... ..+..+..++++++++.+++.+...
T Consensus 71 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~ 147 (260)
T PRK10744 71 AEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVK 147 (260)
T ss_pred cceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhH
Confidence 58999999998742 134567899999998888 799999988654321 2334445567899999999853211
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
... +..+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|+
T Consensus 148 ~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~ 224 (260)
T PRK10744 148 DKL-HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDY 224 (260)
T ss_pred HHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCE
Confidence 111 234557999999999999999999999999999999999999999999999964 789999999986 47789999
Q ss_pred EEEecCCEEEeeCChhhHH
Q 036088 312 LIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~ 330 (737)
+++|++|+++..|+++++.
T Consensus 225 i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 225 TAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999887763
No 142
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.4e-42 Score=360.55 Aligned_cols=228 Identities=25% Similarity=0.395 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+.... ....+.+.+|+|+||++++||+++|+|||||||||||++|+|++++. +|+|
T Consensus 2 ~l~~~~l~~~~~~~~~-----------~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i 68 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGL-----------FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTV 68 (265)
T ss_pred eEEEEeEEEEeccCcc-----------ccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEE
Confidence 5899999999963100 00011356999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-ccccc
Q 036088 162 TLNGEVLGSK------LLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAMT 232 (737)
Q Consensus 162 ~~~G~~~~~~------~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 232 (737)
.++|+++... ..++.++||+|++ .+++.+||+||+.+..... ........+++++++++.+|+. ...+.
T Consensus 69 ~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 69 SFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred EECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 9999987532 1355689999996 4677899999998764321 1223344567789999999996 45554
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcce
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 311 (737)
. ++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||+
T Consensus 147 ~-----~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~ 220 (265)
T TIGR02769 147 L-----PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQR 220 (265)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcE
Confidence 4 4479999999999999999999999999999999999999999999999875 899999999986 47789999
Q ss_pred EEEecCCEEEeeCChhhHH
Q 036088 312 LIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~ 330 (737)
+++|++|++++.|+++++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999988764
No 143
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-42 Score=364.30 Aligned_cols=222 Identities=23% Similarity=0.383 Sum_probs=189.2
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-cce
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR-LKG 159 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~-~~G 159 (737)
.+|+++|+++.|+.. .+.+|+|+||+|++||+++|+||||||||||+++|+|++++.. .+|
T Consensus 4 ~~l~i~~l~~~~~~~------------------~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G 65 (282)
T PRK13640 4 NIVEFKHVSFTYPDS------------------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65 (282)
T ss_pred ceEEEEEEEEEcCCC------------------CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCc
Confidence 479999999999521 2459999999999999999999999999999999999987541 139
Q ss_pred EEEECCEeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 160 TVTLNGEVLGSK---LLKIISAYVMQDDL-LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 160 ~I~~~G~~~~~~---~~~~~~~yV~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
+|.++|+++... ..++.+|||+|++. +++..||.||+.|..... ..+.++..++++++++.+||.+..++.
T Consensus 66 ~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-- 140 (282)
T PRK13640 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-- 140 (282)
T ss_pred EEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC--
Confidence 999999998542 34567899999974 666789999998864332 234556667899999999998766554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
++.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++
T Consensus 141 ---~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~ 215 (282)
T PRK13640 141 ---PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLV 215 (282)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEE
Confidence 4579999999999999999999999999999999999999999999999865 8999999999864 4 58999999
Q ss_pred ecCCEEEeeCChhhHH
Q 036088 315 LSNGQAVCSEAPSNLS 330 (737)
Q Consensus 315 L~~G~iv~~G~~~~~~ 330 (737)
|++|++++.|+++++.
T Consensus 216 l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 216 LDDGKLLAQGSPVEIF 231 (282)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
No 144
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.2e-43 Score=347.03 Aligned_cols=222 Identities=30% Similarity=0.497 Sum_probs=205.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|++++|++++. .+.+++|+||++++|++.+++|||||||||.+++|.|++.++ +|+|
T Consensus 2 ~L~ie~vtK~Fg--------------------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~--~G~I 59 (300)
T COG4152 2 ALEIEGVTKSFG--------------------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT--EGEI 59 (300)
T ss_pred ceEEecchhccC--------------------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc--CceE
Confidence 588999999986 477999999999999999999999999999999999999854 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
.++|++++. ..+.++||+|.+.-|++.+||.|.|.|-++++ ++++++.+++++.+|+++++......+| ..
T Consensus 60 ~~~g~~~~~-~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~ 130 (300)
T COG4152 60 TWNGGPLSQ-EIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KE 130 (300)
T ss_pred EEcCcchhh-hhhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HH
Confidence 999999875 35667899999999999999999999999887 6888999999999999999988776555 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAV 321 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 321 (737)
||.|++|++.+-.+++++|++++||||+|||||.+.+.+-+.+.+++++|.|||+++|++.. +.++||++++|++|+.|
T Consensus 131 LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~-vEeLCD~llmL~kG~~V 209 (300)
T COG4152 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH-VEELCDRLLMLKKGQTV 209 (300)
T ss_pred hhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHH-HHHHhhhhheecCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999864 89999999999999999
Q ss_pred eeCChhhHHHHHhh
Q 036088 322 CSEAPSNLSQFFGA 335 (737)
Q Consensus 322 ~~G~~~~~~~~f~~ 335 (737)
.+|+.+++...|+.
T Consensus 210 ~~G~v~~ir~~~Gk 223 (300)
T COG4152 210 LYGTVEDIRRSFGK 223 (300)
T ss_pred EeccHHHHHHhcCC
Confidence 99999999876653
No 145
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-42 Score=361.01 Aligned_cols=222 Identities=21% Similarity=0.341 Sum_probs=188.2
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+ .+.+|+|+||++++||+++|+|||||||||||++|+|++++. +|+
T Consensus 6 ~~l~i~~l~~~~~--------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~ 63 (265)
T PRK10253 6 ARLRGEQLTLGYG--------------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA--HGH 63 (265)
T ss_pred cEEEEEEEEEEEC--------------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CcE
Confidence 4799999999996 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
|.++|+++.. ...++.++|++|++.+++.+||+||+.+......+ .....+...++++++++.+||.+..++.+
T Consensus 64 i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 141 (265)
T PRK10253 64 VWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-- 141 (265)
T ss_pred EEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc--
Confidence 9999998753 22345689999999999889999999875311100 00011234567899999999987665544
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEe
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.++||++++|
T Consensus 142 ---~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l 217 (265)
T PRK10253 142 ---DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIAL 217 (265)
T ss_pred ---ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 579999999999999999999999999999999999999999999999874 899999999986 588999999999
Q ss_pred cCCEEEeeCChhhHH
Q 036088 316 SNGQAVCSEAPSNLS 330 (737)
Q Consensus 316 ~~G~iv~~G~~~~~~ 330 (737)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 218 REGKIVAQGAPKEIV 232 (265)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999887753
No 146
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=357.95 Aligned_cols=224 Identities=20% Similarity=0.331 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~ 158 (737)
.|+++|++++|+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +.+
T Consensus 4 ~l~i~~v~~~~~--------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~ 63 (258)
T PRK14241 4 RIDVKDLNIYYG--------------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVE 63 (258)
T ss_pred cEEEeeEEEEEC--------------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcc
Confidence 689999999995 245999999999999999999999999999999999998643 258
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|+++.. ...++.++|++|++.+++.+||+||+.++...+. .....+.+++++++++.+|+.......
T Consensus 64 G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 141 (258)
T PRK14241 64 GEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDR 141 (258)
T ss_pred eEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhH
Confidence 999999998742 2345678999999999999999999988754321 113344566789999999984211111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..+..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||+++
T Consensus 142 ~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~ 218 (258)
T PRK14241 142 L-DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTA 218 (258)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEE
Confidence 1 234457999999999999999999999999999999999999999999999964 689999999986 4788999999
Q ss_pred Eec------CCEEEeeCChhhHH
Q 036088 314 FLS------NGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~------~G~iv~~G~~~~~~ 330 (737)
+|+ +|++++.|+++++.
T Consensus 219 ~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 219 FFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEecccCCCCceEEecCCHHHHH
Confidence 996 79999999987763
No 147
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-43 Score=383.82 Aligned_cols=216 Identities=33% Similarity=0.491 Sum_probs=189.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.++++||+|+|+.. ..++|+|+||++++||.+||+|+||||||||+++|+|-++++ +|+|
T Consensus 336 ~l~~~~vsF~y~~~------------------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~--~G~i 395 (573)
T COG4987 336 ALELRNVSFTYPGQ------------------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ--QGSI 395 (573)
T ss_pred eeeeccceeecCCC------------------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC--CCee
Confidence 79999999999854 346999999999999999999999999999999999998865 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-------ccc
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-------AAM 231 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~ 231 (737)
.+||.++.. ...++.+++++|..++|.+ |+++||.++.... + ++.+.+.++++||++ ..|
T Consensus 396 ~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~A-----s----DEel~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 396 TLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPDA-----S----DEELWAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred eECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCCC-----C----HHHHHHHHHHcCHHHHHHhChhhhh
Confidence 999998754 3467788999999999998 9999999875432 2 234556666666653 456
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
|.+| +.++.||||||||++|||+|++|.++++|||||.|||+.+++++++.|.+-++ |+|+|++||+... .+.|||
T Consensus 466 t~lg-e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~dr 541 (573)
T COG4987 466 TWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDR 541 (573)
T ss_pred chhc-cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCE
Confidence 6786 56778999999999999999999999999999999999999999999999875 8999999999875 789999
Q ss_pred EEEecCCEEEeeCChhhHHH
Q 036088 312 LIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~~ 331 (737)
|++|++|++++.|.++++..
T Consensus 542 Iivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 542 IIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEECCeeeecCCHHhhhc
Confidence 99999999999999998864
No 148
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=359.55 Aligned_cols=223 Identities=22% Similarity=0.331 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~ 158 (737)
.|+++||++.|+ .+.+|+|+|++|++||+++|+|||||||||||++|+|+.++. +.+
T Consensus 19 ~l~~~nl~~~~~--------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~ 78 (267)
T PRK14235 19 KMRARDVSVFYG--------------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVT 78 (267)
T ss_pred eEEEEeEEEEEC--------------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCc
Confidence 799999999995 245999999999999999999999999999999999998641 358
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|+++|+++.. ...++.++|++|++.+++. ||.||+.++...+.. .....+..++++++++.+|+.+.....
T Consensus 79 G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~ 156 (267)
T PRK14235 79 GKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDR 156 (267)
T ss_pred eEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHH
Confidence 999999998752 1245678999999988885 999999987543210 012334456789999999996421111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||+++
T Consensus 157 ~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~ 233 (267)
T PRK14235 157 L-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTA 233 (267)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEE
Confidence 1 234567999999999999999999999999999999999999999999999975 789999999986 4778999999
Q ss_pred EecCCEEEeeCChhhH
Q 036088 314 FLSNGQAVCSEAPSNL 329 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~ 329 (737)
+|++|+++..|+++++
T Consensus 234 ~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 234 FFHLGNLVEVGDTEKM 249 (267)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999988766
No 149
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-42 Score=349.00 Aligned_cols=209 Identities=28% Similarity=0.458 Sum_probs=177.6
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+. +. .|+||++++||+++|+||||||||||+++|+|+.++. +|+|.
T Consensus 1 i~~~~l~~~~~~--------------------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~--~G~i~ 56 (211)
T cd03298 1 VRLDKIRFSYGE--------------------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVL 56 (211)
T ss_pred CEEEeEEEEeCC--------------------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEE
Confidence 468999998851 22 2999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 163 LNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 163 ~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
++|+++... ..++.++|++|++.+++.+||+||+.+...... .. ..+.+++++++++.+||.+..++.+ ..
T Consensus 57 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 128 (211)
T cd03298 57 INGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GE 128 (211)
T ss_pred ECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----cc
Confidence 999987532 234568999999999999999999988643211 11 2234567899999999987666554 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++
T Consensus 129 LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i 207 (211)
T cd03298 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRI 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999764 899999999986 47789999999999999
Q ss_pred EeeC
Q 036088 321 VCSE 324 (737)
Q Consensus 321 v~~G 324 (737)
+..|
T Consensus 208 ~~~~ 211 (211)
T cd03298 208 AAQG 211 (211)
T ss_pred eecC
Confidence 8654
No 150
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.2e-42 Score=354.02 Aligned_cols=213 Identities=26% Similarity=0.406 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~ 58 (230)
T TIGR03410 1 LEVSNLNVYYG--------------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK--SGSIR 58 (230)
T ss_pred CEEEeEEEEeC--------------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEE
Confidence 46899999985 246999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcC-CcccccccccCC
Q 036088 163 LNGEVLGSK----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLG-LRSAAMTIIGDE 237 (737)
Q Consensus 163 ~~G~~~~~~----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~ 237 (737)
++|+++... ..++.++|++|++.+++.+||.||+.++..... .. ..+.++++++.++ +.+..++.
T Consensus 59 ~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~---- 128 (230)
T TIGR03410 59 LDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR---- 128 (230)
T ss_pred ECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC----
Confidence 999987532 124568999999999999999999988754321 11 2234577777776 45544444
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEec
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|+
T Consensus 129 -~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~ 206 (230)
T TIGR03410 129 -GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVME 206 (230)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 4579999999999999999999999999999999999999999999999875 899999999986 5778999999999
Q ss_pred CCEEEeeCChhhH
Q 036088 317 NGQAVCSEAPSNL 329 (737)
Q Consensus 317 ~G~iv~~G~~~~~ 329 (737)
+|++++.|+++++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998776
No 151
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5e-42 Score=376.36 Aligned_cols=237 Identities=25% Similarity=0.361 Sum_probs=194.1
Q ss_pred EEEEeEEEEEecCcccCCCCCccCcc----ccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQ----DDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLK 158 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~----~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~ 158 (737)
|+++||.+-+.......-.+...+.+ .++.+...+|+|+||++++||+++|+||||||||||+++|+|++++. +
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~--~ 78 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS--R 78 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--C
Confidence 47889998886433210000000111 11234567999999999999999999999999999999999998754 8
Q ss_pred eEEEECCE----eCCc---cc---c-cceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc
Q 036088 159 GTVTLNGE----VLGS---KL---L-KIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR 227 (737)
Q Consensus 159 G~I~~~G~----~~~~---~~---~-~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 227 (737)
|+|+++|+ ++.. .. . ++.++||+|++.+++++||+||+.|+...+ ..++.+.+++++++++.+||.
T Consensus 79 G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~ 155 (382)
T TIGR03415 79 GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLA 155 (382)
T ss_pred cEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCc
Confidence 99999997 3322 11 1 246899999999999999999999986543 245566678899999999998
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHH
Q 036088 228 SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRIL 306 (737)
Q Consensus 228 ~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 306 (737)
+..++.++ .|||||||||+|||+|+.+|+||||||||+|||+.++.++.+.|++++++ |+|||++||+++ ++.
T Consensus 156 ~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~ 229 (382)
T TIGR03415 156 QWADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EAL 229 (382)
T ss_pred hhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH
Confidence 87766554 69999999999999999999999999999999999999999999999875 899999999986 588
Q ss_pred hhcceEEEecCCEEEeeCChhhHH
Q 036088 307 SLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 307 ~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
+++|++++|++|+++..|+++++.
T Consensus 230 ~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 230 KIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999998774
No 152
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=5.7e-42 Score=352.16 Aligned_cols=209 Identities=24% Similarity=0.384 Sum_probs=182.4
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+ .+.+|+|+||++++||+++|+|||||||||||++|+|++++ .+|+|.
T Consensus 1 l~l~~v~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~ 58 (223)
T TIGR03740 1 LETKNLSKRFG--------------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEII 58 (223)
T ss_pred CEEEeEEEEEC--------------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEE
Confidence 46899999885 24699999999999999999999999999999999999874 489999
Q ss_pred ECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 036088 163 LNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGV 242 (737)
Q Consensus 163 ~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 242 (737)
++|+++.... ++.++|++|++.+++.+||+||+.+....+. .. ..++.++++.+|+.+..+..+ ..|
T Consensus 59 ~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~L 125 (223)
T TIGR03740 59 FDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQF 125 (223)
T ss_pred ECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhC
Confidence 9999875432 2468999999999998999999988654321 11 246788999999987766554 469
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEe
Q 036088 243 SGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVC 322 (737)
Q Consensus 243 SGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 322 (737)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGY 204 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999986 4788999999999999999
Q ss_pred eCChh
Q 036088 323 SEAPS 327 (737)
Q Consensus 323 ~G~~~ 327 (737)
.|++.
T Consensus 205 ~~~~~ 209 (223)
T TIGR03740 205 QGKIN 209 (223)
T ss_pred ecChh
Confidence 98865
No 153
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=362.13 Aligned_cols=222 Identities=26% Similarity=0.412 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+.... ...+.+|+|+||+|++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 4 ~l~~~~l~~~~~~~~~--------------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i 67 (280)
T PRK13633 4 MIKCKNVSYKYESNEE--------------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS--EGKV 67 (280)
T ss_pred eEEEeeeEEEcCCCCC--------------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceE
Confidence 7999999999963210 01356999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc----ccccceEEEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLGS----KLLKIISAYVMQDDL--LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~----~~~~~~~~yV~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|+++.. ...++.+|||+|++. ++ ..||.||+.|..... ..+..+.+++++++++.+||.+..++.+
T Consensus 68 ~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~- 142 (280)
T PRK13633 68 YVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP- 142 (280)
T ss_pred EECCEeccccccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-
Confidence 999998853 234567899999973 44 469999999875432 2344555678999999999988776655
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||++++
T Consensus 143 ----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~ 216 (280)
T PRK13633 143 ----HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIV 216 (280)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEE
Confidence 469999999999999999999999999999999999999999999999764 9999999999874 54 4999999
Q ss_pred ecCCEEEeeCChhhHH
Q 036088 315 LSNGQAVCSEAPSNLS 330 (737)
Q Consensus 315 L~~G~iv~~G~~~~~~ 330 (737)
|++|++++.|+++++.
T Consensus 217 l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 217 MDSGKVVMEGTPKEIF 232 (280)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999988764
No 154
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=358.45 Aligned_cols=227 Identities=22% Similarity=0.288 Sum_probs=189.8
Q ss_pred CCCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC--
Q 036088 78 NYPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ-- 155 (737)
Q Consensus 78 ~~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-- 155 (737)
..+.+|+++||+++|+ .+++|+|+|+++++||+++|+|||||||||||++|+|++++.
T Consensus 16 ~~~~~l~~~nl~~~~~--------------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~ 75 (267)
T PRK14237 16 EEEIALSTKDLHVYYG--------------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDI 75 (267)
T ss_pred CCCeEEEEeeEEEEEC--------------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCC
Confidence 3455899999999995 256999999999999999999999999999999999998641
Q ss_pred -CcceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc
Q 036088 156 -RLKGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA 229 (737)
Q Consensus 156 -~~~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 229 (737)
+.+|+|.++|+++.. ...++.++||+|++.+++ .||+||+.++.... ....+...++++.++++.++|.+.
T Consensus 76 ~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~ 152 (267)
T PRK14237 76 ARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQ 152 (267)
T ss_pred CCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCch
Confidence 468999999998742 123567899999998888 59999999875422 112334455778899999998643
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhc
Q 036088 230 AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 230 ~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 309 (737)
.+... +..++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.++|
T Consensus 153 i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~ 229 (267)
T PRK14237 153 VKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARAS 229 (267)
T ss_pred hhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhc
Confidence 22222 345668999999999999999999999999999999999999999999999964 789999999986 578999
Q ss_pred ceEEEecCCEEEeeCChhhHH
Q 036088 310 DRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~~~~ 330 (737)
|++++|++|++++.|+++++.
T Consensus 230 d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 230 DYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988763
No 155
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.5e-42 Score=411.82 Aligned_cols=214 Identities=27% Similarity=0.373 Sum_probs=183.9
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+|+|+.. .+++|+|+|+++++||.+||+||||||||||+|+|+|+++|. +|+
T Consensus 450 ~~I~~~nvsf~Y~~~------------------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--~G~ 509 (686)
T TIGR03797 450 GAIEVDRVTFRYRPD------------------GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGS 509 (686)
T ss_pred ceEEEEEEEEEcCCC------------------CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCE
Confidence 369999999999632 356999999999999999999999999999999999998854 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-------ccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-------SAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~ 230 (737)
|.+||+++.. ..+|+.+|||+|++.+|++ |++|||.++.. .++ +++.+.++..|+. +..
T Consensus 510 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~ 578 (686)
T TIGR03797 510 VFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGM 578 (686)
T ss_pred EEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhccccc
Confidence 9999999864 4578889999999999997 99999998642 122 2344445554443 456
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
||.+|+ .+..||||||||++|||||+++|+||+||||||+||+.++.++.+.|+++ ++|+|+++|+++ ..+.+|
T Consensus 579 dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D 652 (686)
T TIGR03797 579 HTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNAD 652 (686)
T ss_pred cccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCC
Confidence 888875 45779999999999999999999999999999999999999999999886 589999999985 467899
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++|++++.|+++++.+
T Consensus 653 ~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 653 RIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999998753
No 156
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=6.9e-42 Score=358.95 Aligned_cols=219 Identities=27% Similarity=0.417 Sum_probs=185.5
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.
T Consensus 2 l~~~~l~~~~~--------------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~ 59 (256)
T TIGR03873 2 LRLSRVSWSAG--------------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD--AGTVD 59 (256)
T ss_pred ceEEeEEEEEC--------------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CCEEE
Confidence 67899999985 246999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 163 LNGEVLGSK---LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 163 ~~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
++|+++... ..++.++|++|++.+++.+||+||+.++...... ......+..++++++++.+|+.+..++.+
T Consensus 60 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 135 (256)
T TIGR03873 60 LAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM---- 135 (256)
T ss_pred ECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 999987532 2345689999998777888999999885321000 01112234467899999999987666554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|++++++|.|||+++|++. .+.++||++++|++|
T Consensus 136 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 136 -STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGG 213 (256)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 469999999999999999999999999999999999999999999999877899999999986 578899999999999
Q ss_pred EEEeeCChhhH
Q 036088 319 QAVCSEAPSNL 329 (737)
Q Consensus 319 ~iv~~G~~~~~ 329 (737)
+++..|+.+++
T Consensus 214 ~i~~~g~~~~~ 224 (256)
T TIGR03873 214 RVVAAGPPREV 224 (256)
T ss_pred CEEEecCHHHh
Confidence 99999987765
No 157
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=355.53 Aligned_cols=223 Identities=18% Similarity=0.330 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--CC-Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRIS--KQ-RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~~-~~~ 158 (737)
.|+++|++++|+ .+.+|+|+|++|++||+++|+||||||||||+++|+|+.+ +. +.+
T Consensus 4 ~l~~~nl~~~~~--------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~ 63 (252)
T PRK14256 4 KVKLEQLNVHFG--------------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVT 63 (252)
T ss_pred EEEEEEEEEEeC--------------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCc
Confidence 589999999996 2459999999999999999999999999999999999975 21 258
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+..... ......+.+++++++++.+|+.......
T Consensus 64 G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 141 (252)
T PRK14256 64 GKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDR 141 (252)
T ss_pred eEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHH
Confidence 999999998742 234667899999999999999999998765432 1122334456789999999986422111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||+++
T Consensus 142 ~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~ 218 (252)
T PRK14256 142 L-KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTA 218 (252)
T ss_pred h-hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEE
Confidence 1 234567999999999999999999999999999999999999999999999976 689999999986 5788999999
Q ss_pred EecCCEEEeeCChhhH
Q 036088 314 FLSNGQAVCSEAPSNL 329 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~ 329 (737)
+|++|+++..|+++++
T Consensus 219 ~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 219 FFYMGDLVECGETKKI 234 (252)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998775
No 158
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-42 Score=393.03 Aligned_cols=222 Identities=22% Similarity=0.358 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ ++.+|+||||++++||+++|+||||||||||+|+|+|++++++.+|+|
T Consensus 5 ~l~~~nl~~~~~--------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i 64 (506)
T PRK13549 5 LLEMKNITKTFG--------------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI 64 (506)
T ss_pred eEEEeeeEEEeC--------------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE
Confidence 699999999995 246999999999999999999999999999999999998753358999
Q ss_pred EECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.++|+++.... .++.++||+|++.+++.+||+||+.++...+........+..++++++++.+|+.+..++.++
T Consensus 65 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 142 (506)
T PRK13549 65 IFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-- 142 (506)
T ss_pred EECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh--
Confidence 99999885422 245689999999999999999999987543211112334455678999999999877766554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++|++
T Consensus 143 ---~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~ 218 (506)
T PRK13549 143 ---NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD 218 (506)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC
Confidence 69999999999999999999999999999999999999999999999878999999999986 57889999999999
Q ss_pred CEEEeeCChhhH
Q 036088 318 GQAVCSEAPSNL 329 (737)
Q Consensus 318 G~iv~~G~~~~~ 329 (737)
|++++.|+++++
T Consensus 219 G~i~~~~~~~~~ 230 (506)
T PRK13549 219 GRHIGTRPAAGM 230 (506)
T ss_pred CEEeeecccccC
Confidence 999999988765
No 159
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=356.44 Aligned_cols=223 Identities=21% Similarity=0.339 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--C-Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK--Q-RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~--~-~~~ 158 (737)
+|+++|+++.|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+.++ . +.+
T Consensus 12 ~l~i~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~ 71 (259)
T PRK14274 12 VYQINGMNLWYG--------------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLT 71 (259)
T ss_pred eEEEeeEEEEEC--------------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCc
Confidence 799999999995 24599999999999999999999999999999999999763 1 148
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+...... ...+.+..++++++++.+++.+.....
T Consensus 72 G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 148 (259)
T PRK14274 72 GEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDR 148 (259)
T ss_pred eEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhh
Confidence 999999998742 1345678999999988886 99999988653321 112344456788999999985421111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++||++. .+.++||+++
T Consensus 149 l-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~ 225 (259)
T PRK14274 149 L-HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTA 225 (259)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEE
Confidence 1 234567999999999999999999999999999999999999999999999965 789999999986 5788999999
Q ss_pred EecCCEEEeeCChhhHH
Q 036088 314 FLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~ 330 (737)
+|++|+++..|+++++.
T Consensus 226 ~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 226 FFYMGELVECNDTNKMF 242 (259)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999988763
No 160
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.5e-41 Score=352.46 Aligned_cols=217 Identities=27% Similarity=0.441 Sum_probs=188.4
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+ .+.+|+|+|+++.+||+++|+||||||||||+++|+|++++. +|+|.
T Consensus 1 i~i~~l~~~~~--------------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~ 58 (237)
T TIGR00968 1 IEIANISKRFG--------------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIR 58 (237)
T ss_pred CEEEEEEEEEC--------------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEE
Confidence 46899999986 246999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 163 LNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 163 ~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
++|.++... ..++.++|++|++.+++.+|+.||+.+....+ ........+.++++++.+++.+..++.+ +.
T Consensus 59 i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (237)
T TIGR00968 59 LNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQ 130 (237)
T ss_pred ECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 999987542 23456899999999999999999999875432 1233444567899999999987666554 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
|||||+||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876 899999999986 57889999999999999
Q ss_pred EeeCChhhHH
Q 036088 321 VCSEAPSNLS 330 (737)
Q Consensus 321 v~~G~~~~~~ 330 (737)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999987763
No 161
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=354.39 Aligned_cols=223 Identities=23% Similarity=0.327 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---cc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR---LK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~---~~ 158 (737)
+|+++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.+..+ .+
T Consensus 5 ~l~~~~l~~~~~--------------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~ 64 (252)
T PRK14239 5 ILQVSDLSVYYN--------------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64 (252)
T ss_pred eEEEEeeEEEEC--------------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCcc
Confidence 689999999995 2459999999999999999999999999999999999854212 48
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|+++.. ...++.++||+|++.+++ +||+||+.+....+. .......+++++++++.+++.+.....
T Consensus 65 G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 141 (252)
T PRK14239 65 GSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDR 141 (252)
T ss_pred ceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHH
Confidence 999999998742 124567899999998888 799999998754321 112233456788899999875321111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||+++
T Consensus 142 ~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~ 218 (252)
T PRK14239 142 L-HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTG 218 (252)
T ss_pred H-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEE
Confidence 1 234567999999999999999999999999999999999999999999999975 689999999986 5788999999
Q ss_pred EecCCEEEeeCChhhHH
Q 036088 314 FLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~ 330 (737)
+|++|++++.|+++++.
T Consensus 219 ~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 219 FFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988763
No 162
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=351.20 Aligned_cols=216 Identities=24% Similarity=0.411 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+. + ..|+||++++||+++|+||||||||||+++|+|+.++. +|+|
T Consensus 1 ~l~~~~l~~~~~~--------------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i 56 (232)
T PRK10771 1 MLKLTDITWLYHH--------------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSL 56 (232)
T ss_pred CeEEEEEEEEECC--------------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceE
Confidence 4789999999952 1 13899999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
.++|+++... ..++.++|++|++.+++.+||.||+.+...... .. .+..+++++++++.+||.+..++.+ +
T Consensus 57 ~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 128 (232)
T PRK10771 57 TLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----G 128 (232)
T ss_pred EECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----c
Confidence 9999987532 224568999999999999999999987532111 11 2234567899999999987776655 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|+
T Consensus 129 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 207 (232)
T PRK10771 129 QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGR 207 (232)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999764 899999999986 5788999999999999
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
+++.|+++++.
T Consensus 208 i~~~g~~~~~~ 218 (232)
T PRK10771 208 IAWDGPTDELL 218 (232)
T ss_pred EEEeCCHHHHH
Confidence 99999887664
No 163
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=372.61 Aligned_cols=209 Identities=29% Similarity=0.447 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|++ ||+++|+. + .+ |+||++++||+++|+|||||||||||++|+|++++. +|+|
T Consensus 1 ~l~~-~l~k~~~~--------------------~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I 55 (352)
T PRK11144 1 MLEL-NFKQQLGD--------------------L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ--KGRI 55 (352)
T ss_pred CeEE-EEEEEeCC--------------------E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEE
Confidence 4677 89988851 2 23 899999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc-------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 162 TLNGEVLGS-------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 162 ~~~G~~~~~-------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
.++|+++.. ...++.++||+|+..+++++||+||+.|+.. ....++++++++.+||.+..++.+
T Consensus 56 ~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~ 126 (352)
T PRK11144 56 VLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP 126 (352)
T ss_pred EECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc
Confidence 999998743 1235678999999999999999999998642 123457899999999987776554
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
+.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.++||+++
T Consensus 127 -----~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~ 200 (352)
T PRK11144 127 -----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVV 200 (352)
T ss_pred -----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEE
Confidence 479999999999999999999999999999999999999999999999875 899999999986 5889999999
Q ss_pred EecCCEEEeeCChhhHH
Q 036088 314 FLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~ 330 (737)
+|++|+++..|+++++.
T Consensus 201 ~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 201 VLEQGKVKAFGPLEEVW 217 (352)
T ss_pred EEeCCEEEEecCHHHHH
Confidence 99999999999998874
No 164
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=362.49 Aligned_cols=221 Identities=24% Similarity=0.366 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+++|+.+. ...+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 6 ~l~i~nl~~~~~~~~---------------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i 68 (289)
T PRK13645 6 DIILDNVSYTYAKKT---------------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE--TGQT 68 (289)
T ss_pred eEEEEEEEEEeCCCC---------------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceE
Confidence 589999999996320 00135999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc--------ccccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-ccc
Q 036088 162 TLNGEVLGS--------KLLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAA 230 (737)
Q Consensus 162 ~~~G~~~~~--------~~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 230 (737)
.++|+++.. ...++.++||+|++ .+++ .||+||+.|..... .....+..++++++++.++|. +..
T Consensus 69 ~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~ 144 (289)
T PRK13645 69 IVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYV 144 (289)
T ss_pred EECCEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHh
Confidence 999998741 23456789999997 3454 59999999865322 123444456788999999994 455
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 309 (737)
++. ++.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++|
T Consensus 145 ~~~-----~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~ 218 (289)
T PRK13645 145 KRS-----PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIA 218 (289)
T ss_pred cCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhC
Confidence 444 4479999999999999999999999999999999999999999999999764 899999999986 578899
Q ss_pred ceEEEecCCEEEeeCChhhH
Q 036088 310 DRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~~~ 329 (737)
|++++|++|++++.|+++++
T Consensus 219 d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 219 DEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred CEEEEEECCEEEEeCCHHHH
Confidence 99999999999999988776
No 165
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-41 Score=350.19 Aligned_cols=217 Identities=28% Similarity=0.425 Sum_probs=188.1
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~--~G~i~ 58 (232)
T cd03300 1 IELENVSKFYG--------------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEIL 58 (232)
T ss_pred CEEEeEEEEeC--------------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEE
Confidence 46899999985 246999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 163 LNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 163 ~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
++|+++... ..++.++|++|++.+++.+|++||+.+....+ ........++++++++.+|+.+..++.+ ..
T Consensus 59 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (232)
T cd03300 59 LDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQ 130 (232)
T ss_pred ECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999988542 23457899999999999899999998876543 1233445567889999999987765554 47
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 899999999986 47889999999999999
Q ss_pred EeeCChhhHH
Q 036088 321 VCSEAPSNLS 330 (737)
Q Consensus 321 v~~G~~~~~~ 330 (737)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999876653
No 166
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=354.43 Aligned_cols=212 Identities=28% Similarity=0.409 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++|++++|+ .+.+|+|+||++.+||+++|+||||||||||+++|+|+.++. +|+|
T Consensus 3 ~l~~~~l~~~~~--------------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i 60 (241)
T PRK14250 3 EIEFKEVSYSSF--------------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT--EGSI 60 (241)
T ss_pred eEEEEeEEEEeC--------------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEE
Confidence 589999999985 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCC
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~ 237 (737)
.++|+++.. ...++.++|++|++.+++ .||+||+.+....+ . ...++++++++.+||. +..++
T Consensus 61 ~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~----- 127 (241)
T PRK14250 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR----- 127 (241)
T ss_pred EECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----
Confidence 999998753 234567899999998887 59999998754321 1 1235688999999996 34443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEec
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|+
T Consensus 128 ~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~ 206 (241)
T PRK14250 128 DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLN 206 (241)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEe
Confidence 34579999999999999999999999999999999999999999999999874 899999999986 4788999999999
Q ss_pred CCEEEeeCChhhH
Q 036088 317 NGQAVCSEAPSNL 329 (737)
Q Consensus 317 ~G~iv~~G~~~~~ 329 (737)
+|+++..|+++++
T Consensus 207 ~G~i~~~~~~~~~ 219 (241)
T PRK14250 207 KGILVEYAKTYDF 219 (241)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999988775
No 167
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-42 Score=336.21 Aligned_cols=218 Identities=31% Similarity=0.462 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+.+||+|+.. +|.+|++||++++|||++||+||||||||||||.|+|.+.|+ +|++
T Consensus 1 mi~a~nls~~~~--------------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~--~G~v 58 (259)
T COG4559 1 MIRAENLSYSLA--------------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEV 58 (259)
T ss_pred CeeeeeeEEEee--------------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC--CCeE
Confidence 578999999986 467999999999999999999999999999999999998765 8999
Q ss_pred EECCEeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCC--cHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 162 TLNGEVLGSK---LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSL--SKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 162 ~~~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
.+||.+++.. ...+..+.+||+..+-...||+|-+.++.. |... ...+..+.+++.|+..++.+.+.+.+
T Consensus 59 ~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-- 133 (259)
T COG4559 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRDY-- 133 (259)
T ss_pred eeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccch--
Confidence 9999998653 345567899999776333599999999853 3222 22245566889999999988775443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 237 EQHRGVSGGERRRVSIGVDIIH------DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
+.|||||||||.+||.|+. ++++||||||||.||...+..++++.++++++|..|+++.||.+. ...+||
T Consensus 134 ---~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaD 209 (259)
T COG4559 134 ---RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYAD 209 (259)
T ss_pred ---hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhh
Confidence 4699999999999999985 456999999999999999999999999999999999999999974 788999
Q ss_pred eEEEecCCEEEeeCChhhHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~ 330 (737)
||++|++||++..|+|+++.
T Consensus 210 rivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 210 RIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeeeCCeEeecCCHHHhc
Confidence 99999999999999998864
No 168
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-41 Score=343.78 Aligned_cols=196 Identities=32% Similarity=0.533 Sum_probs=167.5
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CcceE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ-RLKGT 160 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~ 160 (737)
.++|+||+|.|+.+. +++.+|+|+||++++||+++|+||||||||||+++|+|++++. +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~----------------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~ 66 (202)
T cd03233 3 TLSWRNISFTTGKGR----------------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD 66 (202)
T ss_pred eEEEEccEEEeccCC----------------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceE
Confidence 589999999998531 2467999999999999999999999999999999999998732 45899
Q ss_pred EEECCEeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 161 VTLNGEVLGSK--LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 161 I~~~G~~~~~~--~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
|.++|+++... ..++.++|++|++.+++.+||+||+.++.... . +..
T Consensus 67 i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~-----~~~ 115 (202)
T cd03233 67 IHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------G-----NEF 115 (202)
T ss_pred EEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------c-----ccc
Confidence 99999987542 34567899999999999999999998764210 1 233
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++
T Consensus 116 ~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 4579999999999999999999999999999999999999999999999875 677777776654568899999999999
Q ss_pred CEEEeeC
Q 036088 318 GQAVCSE 324 (737)
Q Consensus 318 G~iv~~G 324 (737)
|++++.|
T Consensus 196 G~i~~~g 202 (202)
T cd03233 196 GRQIYYG 202 (202)
T ss_pred CEEEecC
Confidence 9998764
No 169
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.4e-41 Score=357.08 Aligned_cols=228 Identities=21% Similarity=0.312 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|..+.. ....+.+++|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|
T Consensus 4 ~l~~~~l~~~~~~~~~-----------~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~--~G~i 70 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG-----------WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGEL 70 (267)
T ss_pred eEEEeceEEEecCCCC-----------cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--CCEE
Confidence 6999999999953110 00011346999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc---cccceEEEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccccccc
Q 036088 162 TLNGEVLGSK---LLKIISAYVMQDDL--LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~~---~~~~~~~yV~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 235 (737)
.++|.++... ..++.++||+|++. +++.+||.|++.+...... .....+..++++++++.+||. +..+..
T Consensus 71 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 146 (267)
T PRK15112 71 LIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-- 146 (267)
T ss_pred EECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC--
Confidence 9999987532 22346899999974 6788899999988654321 123344556789999999994 445443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++
T Consensus 147 ---~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~ 222 (267)
T PRK15112 147 ---PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLV 222 (267)
T ss_pred ---chhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEE
Confidence 3469999999999999999999999999999999999999999999999875 899999999986 57889999999
Q ss_pred ecCCEEEeeCChhhHH
Q 036088 315 LSNGQAVCSEAPSNLS 330 (737)
Q Consensus 315 L~~G~iv~~G~~~~~~ 330 (737)
|++|++++.|+++++.
T Consensus 223 l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 223 MHQGEVVERGSTADVL 238 (267)
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999877653
No 170
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=328.53 Aligned_cols=215 Identities=30% Similarity=0.490 Sum_probs=192.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
++.+++++.+|+.. .+.+|+|+|++|.+||.++++||||||||||||+++|+.+|. .|+|
T Consensus 3 ~l~~~~~sl~y~g~------------------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~--~G~i 62 (259)
T COG4525 3 MLNVSHLSLSYEGK------------------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS--RGSI 62 (259)
T ss_pred eeehhheEEecCCc------------------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc--cceE
Confidence 56778899999742 256999999999999999999999999999999999998855 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
.+||++++...-. .|.|+|++.|+|.+||.||+.|+.+++ .+.+.++.+++.+++..+||.+..+..| -+
T Consensus 63 ~l~~r~i~gPgae--rgvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~q 132 (259)
T COG4525 63 QLNGRRIEGPGAE--RGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQ 132 (259)
T ss_pred EECCEeccCCCcc--ceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----Ee
Confidence 9999999754333 489999999999999999999999887 6788999999999999999998775554 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecC--C
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSN--G 318 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--G 318 (737)
|||||||||.|||||+.+|++|+||||+++||.-+++++.++|-++.+ .|+.++++||+.. +..-+++++++|+. |
T Consensus 133 LSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pg 211 (259)
T COG4525 133 LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPG 211 (259)
T ss_pred ecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCc
Confidence 999999999999999999999999999999999999999999999875 5999999999986 46779999999985 7
Q ss_pred EEEeeCChh
Q 036088 319 QAVCSEAPS 327 (737)
Q Consensus 319 ~iv~~G~~~ 327 (737)
+++..-+++
T Consensus 212 Rvv~~~~~d 220 (259)
T COG4525 212 RVVERLPLD 220 (259)
T ss_pred eeeEecCCC
Confidence 999876665
No 171
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-42 Score=326.60 Aligned_cols=213 Identities=29% Similarity=0.421 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++++++++.... +...||++|++.+++||.+||+|||||||||||-+++|+..++ +|+|
T Consensus 6 ii~~~~l~ktvg~~~----------------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s--sGeV 67 (228)
T COG4181 6 IIEVHHLSKTVGQGE----------------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEV 67 (228)
T ss_pred eeehhhhhhhhcCCC----------------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC--CceE
Confidence 688899999887543 3567999999999999999999999999999999999997754 9999
Q ss_pred EECCEeCCcc------c-ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 162 TLNGEVLGSK------L-LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 162 ~~~G~~~~~~------~-~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
.+.|+++... . ..+.+|+|||...|+|+||..||++..+.++.. ...+..+...++|+.+||.+..+.
T Consensus 68 ~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-- 142 (228)
T COG4181 68 RLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-- 142 (228)
T ss_pred EEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc--
Confidence 9999998541 1 235689999999999999999999999887642 234456678999999999987644
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
.+.+|||||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.++ |.|.|++||||. +...|||.+
T Consensus 143 ---yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~ 217 (228)
T COG4181 143 ---YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQL 217 (228)
T ss_pred ---CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhhee
Confidence 45679999999999999999999999999999999999999999999999864 999999999985 678999999
Q ss_pred EecCCEEEe
Q 036088 314 FLSNGQAVC 322 (737)
Q Consensus 314 lL~~G~iv~ 322 (737)
-|.+|+++.
T Consensus 218 r~~~G~l~~ 226 (228)
T COG4181 218 RLRSGRLVE 226 (228)
T ss_pred eeecceecc
Confidence 999999874
No 172
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=352.98 Aligned_cols=223 Identities=21% Similarity=0.366 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~ 158 (737)
+|+++|+++.|+ .+.+|+|+||++++||+++|+|||||||||||++|+|+.++. +.+
T Consensus 3 ~l~~~~l~~~~~--------------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~ 62 (250)
T PRK14262 3 IIEIENFSAYYG--------------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62 (250)
T ss_pred eEEEEeeEEEeC--------------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcc
Confidence 689999999995 245999999999999999999999999999999999997631 258
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|.++.. ...++.++|++|++.+++ .||+||+.+...... .......++.+++.++.+|+.+..+..
T Consensus 63 G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 139 (250)
T PRK14262 63 GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE 139 (250)
T ss_pred eEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH
Confidence 999999998753 124567899999999888 799999998754321 112333456688899999986432111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..+++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|+++
T Consensus 140 ~-~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~ 216 (250)
T PRK14262 140 L-NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIA 216 (250)
T ss_pred H-hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEE
Confidence 1 345567999999999999999999999999999999999999999999999975 789999999986 4788999999
Q ss_pred EecCCEEEeeCChhhHH
Q 036088 314 FLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~ 330 (737)
+|++|+++..|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 217 FMYRGELIEYGPTREIV 233 (250)
T ss_pred EEECCEEEEecCHHHHH
Confidence 99999999999987764
No 173
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.7e-41 Score=371.72 Aligned_cols=198 Identities=28% Similarity=0.480 Sum_probs=175.0
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc-------cccceEEEEecCCCCCCCCCH
Q 036088 120 DISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK-------LLKIISAYVMQDDLLYSMLTI 192 (737)
Q Consensus 120 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yV~Q~~~l~~~lTV 192 (737)
|+||++++||+++|+|||||||||||++|+|++++. +|+|.++|+++... ..++.++||+|++.+++++||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD--EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 999999999999999999999999999999998754 89999999987431 235668999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 036088 193 EETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGL 272 (737)
Q Consensus 193 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgL 272 (737)
+||+.|+.... ...+.+++++++++.+||.+..++.+ +.|||||||||+|||||+.+|++|||||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875421 22344567899999999987776554 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 273 DSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 273 D~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
|+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|+++..|+++++.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999999999999999875 899999999986 578899999999999999999988764
No 174
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-41 Score=352.18 Aligned_cols=222 Identities=21% Similarity=0.343 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---cc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR---LK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~---~~ 158 (737)
.|+++||++.|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+.++.+ .+
T Consensus 3 ~l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~ 62 (250)
T PRK14240 3 KISVKDLDLFYG--------------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIE 62 (250)
T ss_pred eEEEEEEEEEEC--------------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCc
Confidence 589999999995 2459999999999999999999999999999999999875322 48
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|+++.. ...++.++||+|++.+++ +||+||+.+...... .....+.+++++++++.+++.+.....
T Consensus 63 G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~ 139 (250)
T PRK14240 63 GEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDR 139 (250)
T ss_pred eEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHH
Confidence 999999998753 124567899999998888 899999998754321 112334556788899999875321111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|+++
T Consensus 140 ~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~ 216 (250)
T PRK14240 140 L-KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTA 216 (250)
T ss_pred H-hcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEE
Confidence 1 234557999999999999999999999999999999999999999999999964 799999999976 5788999999
Q ss_pred EecCCEEEeeCChhhH
Q 036088 314 FLSNGQAVCSEAPSNL 329 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~ 329 (737)
+|++|+++..|+++++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 217 FFLNGEIVEFGDTVDL 232 (250)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999988775
No 175
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=352.90 Aligned_cols=224 Identities=21% Similarity=0.320 Sum_probs=186.3
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Cc
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RL 157 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~ 157 (737)
++|+++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.
T Consensus 3 ~~l~~~~l~~~~~--------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~ 62 (251)
T PRK14270 3 IKMESKNLNLWYG--------------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI 62 (251)
T ss_pred cEEEEEEeEEEEC--------------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCC
Confidence 4789999999985 245999999999999999999999999999999999997642 25
Q ss_pred ceEEEECCEeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc
Q 036088 158 KGTVTLNGEVLGSK-----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 158 ~G~I~~~G~~~~~~-----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 232 (737)
+|+|.++|+++... ..++.++|++|++.+++ +||+||+.|...... .....+..++++++++.+|+.+....
T Consensus 63 ~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 139 (251)
T PRK14270 63 EGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKD 139 (251)
T ss_pred ccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhh
Confidence 89999999987531 23566899999999888 799999998754321 11233445678889999988531111
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.. +..++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++
T Consensus 140 ~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v 216 (251)
T PRK14270 140 DL-KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYT 216 (251)
T ss_pred Hh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEE
Confidence 11 234567999999999999999999999999999999999999999999999976 689999999986 578899999
Q ss_pred EEecCCEEEeeCChhhHH
Q 036088 313 IFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~ 330 (737)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 217 AFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEECCeEEEeCCHHHHh
Confidence 999999999999988763
No 176
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4.6e-42 Score=400.61 Aligned_cols=218 Identities=23% Similarity=0.360 Sum_probs=185.5
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+|+|+.. .+++|+|+|+++++||.+||+||||||||||+++|+|+++|. +|+
T Consensus 340 ~~i~~~~vsf~y~~~------------------~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~--~G~ 399 (582)
T PRK11176 340 GDIEFRNVTFTYPGK------------------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID--EGE 399 (582)
T ss_pred CeEEEEEEEEecCCC------------------CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC--Cce
Confidence 369999999999632 256999999999999999999999999999999999998854 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcC-------Ccccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLG-------LRSAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~ 230 (737)
|.+||++++. ..+++.++||||++.+|+. |++|||.++.. ...++ +++++.++..| |++..
T Consensus 400 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~~----~~i~~al~~~~l~~~i~~lp~Gl 470 (582)
T PRK11176 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYART----EQYSR----EQIEEAARMAYAMDFINKMDNGL 470 (582)
T ss_pred EEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCC----CCCCH----HHHHHHHHHhCcHHHHHhccccc
Confidence 9999999864 3567889999999999996 99999988631 11222 23444444443 34557
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
||.+|+ .+..||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.||
T Consensus 471 dt~ig~-~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D 546 (582)
T PRK11176 471 DTVIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKAD 546 (582)
T ss_pred CceeCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCC
Confidence 899985 4567999999999999999999999999999999999999999999999854 799999999985 578899
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++|++++.|+++++.+
T Consensus 547 ~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 547 EILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999988753
No 177
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-41 Score=349.21 Aligned_cols=216 Identities=29% Similarity=0.436 Sum_probs=186.7
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|. .+ +|+|+|++|++||+++|+||||||||||+++|+|++++. +|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~--~G~v~ 57 (235)
T cd03299 1 LKVENLSKDWK--------------------EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD--SGKIL 57 (235)
T ss_pred CeeEeEEEEeC--------------------Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEE
Confidence 46889999885 12 799999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 163 LNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 163 ~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
++|.++... ..++.++|++|++.+++.+||.||+.+..... .....+..+.+.++++.+||.+..++.+ +.
T Consensus 58 i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 129 (235)
T cd03299 58 LNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ET 129 (235)
T ss_pred ECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----cc
Confidence 999987542 23557899999999999999999998875332 2234455567889999999987776554 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.||++++|++|++
T Consensus 130 LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i 208 (235)
T cd03299 130 LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKL 208 (235)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999765 899999999986 47889999999999999
Q ss_pred EeeCChhhHH
Q 036088 321 VCSEAPSNLS 330 (737)
Q Consensus 321 v~~G~~~~~~ 330 (737)
++.|+++++.
T Consensus 209 ~~~~~~~~~~ 218 (235)
T cd03299 209 IQVGKPEEVF 218 (235)
T ss_pred EEecCHHHHH
Confidence 9999877653
No 178
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-41 Score=358.02 Aligned_cols=220 Identities=26% Similarity=0.381 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+.++. +|+|
T Consensus 4 ~l~~~~l~~~~~~~-----------------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~--~G~i 64 (277)
T PRK13642 4 ILEVENLVFKYEKE-----------------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF--EGKV 64 (277)
T ss_pred eEEEEEEEEEcCCC-----------------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CCEE
Confidence 69999999999621 1245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDL-LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.++|+++.. ...++.++|++|++. .++..||.||+.+..... .....+..++++++++.+||.+..++.+
T Consensus 65 ~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (277)
T PRK13642 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP--- 138 (277)
T ss_pred EECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 999998753 234567899999974 566689999998865422 2334445567899999999987665544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEec
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..+|++++|+
T Consensus 139 --~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~ 214 (277)
T PRK13642 139 --ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMK 214 (277)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999999875 9999999999874 4 4699999999
Q ss_pred CCEEEeeCChhhHH
Q 036088 317 NGQAVCSEAPSNLS 330 (737)
Q Consensus 317 ~G~iv~~G~~~~~~ 330 (737)
+|+++..|+++++.
T Consensus 215 ~G~i~~~g~~~~~~ 228 (277)
T PRK13642 215 AGEIIKEAAPSELF 228 (277)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999987763
No 179
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=352.93 Aligned_cols=222 Identities=23% Similarity=0.353 Sum_probs=183.5
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--C-Ccce
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK--Q-RLKG 159 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~--~-~~~G 159 (737)
-+++||++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.++ . +.+|
T Consensus 6 ~~~~~l~~~~~--------------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G 65 (251)
T PRK14244 6 ASVKNLNLWYG--------------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG 65 (251)
T ss_pred EEeeeEEEEEC--------------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcce
Confidence 46889999885 24699999999999999999999999999999999999752 1 3589
Q ss_pred EEEECCEeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 160 TVTLNGEVLGSK-----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 160 ~I~~~G~~~~~~-----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
+|.++|+++... ..++.++||+|++.+++. ||.||+.+....+. ........++.++++++.+||.+...+.+
T Consensus 66 ~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 143 (251)
T PRK14244 66 ELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL 143 (251)
T ss_pred EEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh
Confidence 999999987431 245678999999988886 99999988743321 11122334567889999999965322222
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+..++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. .+.+.||++++
T Consensus 144 -~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~ 220 (251)
T PRK14244 144 -KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAF 220 (251)
T ss_pred -hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEE
Confidence 234567999999999999999999999999999999999999999999999964 899999999986 57889999999
Q ss_pred ecCCEEEeeCChhhH
Q 036088 315 LSNGQAVCSEAPSNL 329 (737)
Q Consensus 315 L~~G~iv~~G~~~~~ 329 (737)
|++|++++.|+++++
T Consensus 221 l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 221 FQSGRIVEYNTTQEI 235 (251)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999988765
No 180
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-41 Score=352.30 Aligned_cols=222 Identities=21% Similarity=0.340 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~ 158 (737)
+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+
T Consensus 3 ~l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~ 62 (249)
T PRK14253 3 KFNIENLDLFYG--------------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKIT 62 (249)
T ss_pred eEEEeccEEEEC--------------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCc
Confidence 589999999995 245999999999999999999999999999999999998643 358
Q ss_pred eEEEECCEeCCc----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 159 GTVTLNGEVLGS----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 159 G~I~~~G~~~~~----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
|+|.++|.++.. ...++.++|++|++.+++ .||.||+.+...... ...+...++++.+.++.+++.+......
T Consensus 63 G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 139 (249)
T PRK14253 63 GKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRL 139 (249)
T ss_pred eEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 999999998742 234567899999999888 799999988653221 1123344567888899888754221111
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+..+..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++
T Consensus 140 -~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~ 216 (249)
T PRK14253 140 -KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAF 216 (249)
T ss_pred -hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEE
Confidence 234567999999999999999999999999999999999999999999999976 689999999986 58889999999
Q ss_pred ecCCEEEeeCChhhH
Q 036088 315 LSNGQAVCSEAPSNL 329 (737)
Q Consensus 315 L~~G~iv~~G~~~~~ 329 (737)
|++|+++..|+++++
T Consensus 217 l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 217 FLMGELVEHDDTQVI 231 (249)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999987765
No 181
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-42 Score=354.78 Aligned_cols=240 Identities=23% Similarity=0.314 Sum_probs=202.7
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccc----cccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQD----DVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR 156 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~----~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~ 156 (737)
..|+++||++-+.......-.....+..+ .+.+...-++|+||+++.||+..|||-||||||||+++|.++++|+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept- 81 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT- 81 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC-
Confidence 46899999998864322100000000011 1122344689999999999999999999999999999999998854
Q ss_pred cceEEEECCEeCCcc------c-ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc
Q 036088 157 LKGTVTLNGEVLGSK------L-LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA 229 (737)
Q Consensus 157 ~~G~I~~~G~~~~~~------~-~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 229 (737)
+|+|+++|+++... . .++.+++|||+..|+|+.||.||..|+.+.+ +++++++++++.++|+.+||...
T Consensus 82 -~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 82 -RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred -CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence 89999999998541 2 3456899999999999999999999998876 67899999999999999999998
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhh
Q 036088 230 AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSL 308 (737)
Q Consensus 230 ~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 308 (737)
.+..+ .+|||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.+|.++ ++|||++|||.. +++++
T Consensus 158 ~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlri 231 (386)
T COG4175 158 ADKYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRI 231 (386)
T ss_pred hhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhc
Confidence 86654 579999999999999999999999999999999999999999999999765 899999999986 68999
Q ss_pred cceEEEecCCEEEeeCChhhHHH
Q 036088 309 LDRLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 309 ~D~v~lL~~G~iv~~G~~~~~~~ 331 (737)
-|||.+|++|+++..|+|+|+..
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHc
Confidence 99999999999999999999853
No 182
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=3.4e-41 Score=344.11 Aligned_cols=210 Identities=23% Similarity=0.395 Sum_probs=179.3
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
++++||++.|+. +++|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.
T Consensus 1 ~~~~~l~~~~~~----------------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~ 56 (213)
T TIGR01277 1 LALDKVRYEYEH----------------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA--SGSIK 56 (213)
T ss_pred CeEEeeeEEeCC----------------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEE
Confidence 468999998841 457999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 163 LNGEVLGS-KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 163 ~~G~~~~~-~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
++|+++.. ...++.++||+|++.+++.+|+.||+.+...... . .....+++++++++.+||.+..++.+ +.
T Consensus 57 ~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 128 (213)
T TIGR01277 57 VNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQ 128 (213)
T ss_pred ECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----cc
Confidence 99998753 2345668999999999999999999987543211 1 12233567889999999987665544 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.++||++++|++|++
T Consensus 129 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i 207 (213)
T TIGR01277 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKI 207 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999764 899999999976 47789999999999999
Q ss_pred EeeCC
Q 036088 321 VCSEA 325 (737)
Q Consensus 321 v~~G~ 325 (737)
+..|.
T Consensus 208 ~~~~~ 212 (213)
T TIGR01277 208 KVVSD 212 (213)
T ss_pred EEecC
Confidence 98875
No 183
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=356.62 Aligned_cols=223 Identities=21% Similarity=0.344 Sum_probs=184.5
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---C
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---R 156 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~ 156 (737)
+.+|+++||+++|+ .+.+|+|+||+|++||+++|+|||||||||||++|+|++++. +
T Consensus 11 ~~~l~i~nl~~~~~--------------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p 70 (269)
T PRK14259 11 NIIISLQNVTISYG--------------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70 (269)
T ss_pred CceEEEEeEEEEEC--------------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCC
Confidence 45899999999995 245999999999999999999999999999999999997631 3
Q ss_pred cceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 157 LKGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 157 ~~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
.+|+|.++|+++.. ...++.++||+|++.+++. ||+||+.+.+..+ .... ..+++++++++.+++....+
T Consensus 71 ~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~ 145 (269)
T PRK14259 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECK 145 (269)
T ss_pred CceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhh
Confidence 58999999998742 2345668999999998885 9999999876432 1222 23456788889888743211
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
... +..+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+
T Consensus 146 ~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~ 222 (269)
T PRK14259 146 DKL-NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDM 222 (269)
T ss_pred hhh-CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCE
Confidence 111 334567999999999999999999999999999999999999999999999965 789999999986 58899999
Q ss_pred EEEecC-----------CEEEeeCChhhHH
Q 036088 312 LIFLSN-----------GQAVCSEAPSNLS 330 (737)
Q Consensus 312 v~lL~~-----------G~iv~~G~~~~~~ 330 (737)
+++|++ |++++.|+++++.
T Consensus 223 i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 223 TAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEEeccccccccccccceEEEeCCHHHHH
Confidence 999996 6789999988774
No 184
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-41 Score=351.58 Aligned_cols=225 Identities=20% Similarity=0.316 Sum_probs=185.5
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---c
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR---L 157 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~---~ 157 (737)
.+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|++++.+ .
T Consensus 3 ~~l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~ 62 (252)
T PRK14272 3 LLLSAQDVNIYYG--------------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARV 62 (252)
T ss_pred EEEEEeeeEEEEC--------------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCC
Confidence 3789999999995 2469999999999999999999999999999999999986543 3
Q ss_pred ceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc
Q 036088 158 KGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 158 ~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 232 (737)
+|+|.++|+++.. ...++.++|++|++.+++.+|+.||+.+...... ...+++..++++++++.+++......
T Consensus 63 ~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~ 140 (252)
T PRK14272 63 TGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKD 140 (252)
T ss_pred ceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhh
Confidence 7999999998753 1345668999999999999999999987654221 11233345667788888876421111
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.. +..++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++
T Consensus 141 ~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i 217 (252)
T PRK14272 141 RL-KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTT 217 (252)
T ss_pred hh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEE
Confidence 11 233457999999999999999999999999999999999999999999999975 799999999986 578899999
Q ss_pred EEecCCEEEeeCChhhHH
Q 036088 313 IFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~ 330 (737)
++|++|++++.|+++++.
T Consensus 218 ~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 218 SFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999987763
No 185
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=6.6e-42 Score=406.76 Aligned_cols=220 Identities=28% Similarity=0.443 Sum_probs=186.5
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+|+|+.. .+++|+|+|++|++||.+||+||||||||||+|+|+|+++|. +|+
T Consensus 462 ~~I~~~~vsf~Y~~~------------------~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~--~G~ 521 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQ------------------ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT--EGS 521 (694)
T ss_pred ceEEEEEEEEEeCCC------------------CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--Cce
Confidence 369999999999632 356999999999999999999999999999999999998854 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHH-----HHHHHHHHHHHcCCcccccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEK-----KRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~ 232 (737)
|.+||.++.. ..+|+.++||+|++.+|+. |++|||.++.. ..++++ +...+++.++.+ ++..||
T Consensus 522 I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~~i~~a~~~~~l~~~i~~l--p~gl~T 593 (694)
T TIGR03375 522 VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YADDEEILRAAELAGVTEFVRRH--PDGLDM 593 (694)
T ss_pred EEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC-----CCCHHHHHHHHHHcChHHHHHhC--cccccc
Confidence 9999999864 4578889999999999997 99999988632 122222 122234444433 445788
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.+|+ .+..||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ ..+.||+|
T Consensus 594 ~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~i 669 (694)
T TIGR03375 594 QIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRI 669 (694)
T ss_pred eecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEE
Confidence 8975 4667999999999999999999999999999999999999999999999864 799999999986 46899999
Q ss_pred EEecCCEEEeeCChhhHHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQF 332 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~~ 332 (737)
++|++|++++.|+++++.+.
T Consensus 670 ivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 670 IVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999988653
No 186
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-41 Score=357.88 Aligned_cols=222 Identities=25% Similarity=0.371 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-----
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR----- 156 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~----- 156 (737)
+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++++..
T Consensus 1 ml~~~nl~~~~~--------------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~ 60 (272)
T PRK13547 1 MLTADHLHVARR--------------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60 (272)
T ss_pred CeEEEEEEEEEC--------------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCccccccc
Confidence 478999999985 2469999999999999999999999999999999999986431
Q ss_pred -cceEEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcC-CCCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 157 -LKGTVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRL-PRSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 157 -~~G~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
.+|+|.++|+++.. ...++.++|++|++.++..+||+||+.+...... .......+..++++++++.+|+.+..+
T Consensus 61 ~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 140 (272)
T PRK13547 61 RVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG 140 (272)
T ss_pred CCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhc
Confidence 27999999998753 2344567999999876566899999988642110 001111234567889999999987665
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCC
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDII---------HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQP 301 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~ 301 (737)
+. +..|||||||||+|||+|+ .+|++|||||||+|||+.+...+.+.|++++++ |+|||+++|++
T Consensus 141 ~~-----~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~ 215 (272)
T PRK13547 141 RD-----VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP 215 (272)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 44 4469999999999999999 599999999999999999999999999999876 89999999998
Q ss_pred cHHHHhhcceEEEecCCEEEeeCChhhH
Q 036088 302 SHRILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 302 ~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
. .+.++||++++|++|++++.|+++++
T Consensus 216 ~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 216 N-LAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred H-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 6 47789999999999999999988765
No 187
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.8e-42 Score=409.96 Aligned_cols=215 Identities=22% Similarity=0.340 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+|+|+.. .+++|+|+|++|++||.+||+||||||||||+|+|+|+++|. +|+
T Consensus 476 ~~I~~~~vsf~y~~~------------------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--~G~ 535 (710)
T TIGR03796 476 GYVELRNITFGYSPL------------------EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW--SGE 535 (710)
T ss_pred CeEEEEEEEEecCCC------------------CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcE
Confidence 369999999999732 356999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-------cccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-------RSAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~ 230 (737)
|.+||.++.. ..+|+.+|||+|++.+|+. |++|||.++.. ..++ +++.+.++..|+ +...
T Consensus 536 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-----~~~~----~~i~~al~~~~l~~~i~~lp~gl 605 (710)
T TIGR03796 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-----TIPD----ADLVRACKDAAIHDVITSRPGGY 605 (710)
T ss_pred EEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCC-----CCCH----HHHHHHHHHhCCHHHHHhCcCcc
Confidence 9999999854 4578889999999999987 99999987532 1222 223344444433 3456
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
||.+|+ .+..||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|++||+++ ..+.||
T Consensus 606 ~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D 679 (710)
T TIGR03796 606 DAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCD 679 (710)
T ss_pred cceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCC
Confidence 788874 4678999999999999999999999999999999999999999999986 4899999999986 467799
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++|++++.|+++++.+
T Consensus 680 ~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 680 EIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999998864
No 188
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-41 Score=354.26 Aligned_cols=223 Identities=23% Similarity=0.330 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Cc
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RL 157 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~ 157 (737)
.+|+++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|++++. +.
T Consensus 24 ~~l~~~nl~~~~~--------------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~ 83 (272)
T PRK14236 24 TALEVRNLNLFYG--------------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83 (272)
T ss_pred cEEEEEEEEEEEC--------------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCC
Confidence 4799999999995 245999999999999999999999999999999999997631 35
Q ss_pred ceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc
Q 036088 158 KGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 158 ~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 232 (737)
+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+...... ...+...+++++++++.+++.+...+
T Consensus 84 ~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 160 (272)
T PRK14236 84 EGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKD 160 (272)
T ss_pred ceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHH
Confidence 8999999998753 1345678999999999986 99999988754321 11223345678889999998642111
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.. +..+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||++
T Consensus 161 ~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i 237 (272)
T PRK14236 161 RL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYT 237 (272)
T ss_pred Hh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEE
Confidence 22 234567999999999999999999999999999999999999999999999976 789999999986 478899999
Q ss_pred EEecCCEEEeeCChhhH
Q 036088 313 IFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~ 329 (737)
++|++|+++..|+++++
T Consensus 238 ~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 238 AFMYMGKLVEYGDTDTL 254 (272)
T ss_pred EEEECCEEEecCCHHHH
Confidence 99999999999988765
No 189
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-41 Score=350.98 Aligned_cols=223 Identities=21% Similarity=0.307 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---cc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR---LK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~---~~ 158 (737)
+|+++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.++.+ .+
T Consensus 6 ~i~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~ 65 (253)
T PRK14261 6 ILSTKNLNLWYG--------------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRIT 65 (253)
T ss_pred eEEEeeeEEEEC--------------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcc
Confidence 799999999995 2469999999999999999999999999999999999875322 48
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+....+. .......++.+.++++.+++.+...+.
T Consensus 66 G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~ 142 (253)
T PRK14261 66 GDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDR 142 (253)
T ss_pred eEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHH
Confidence 999999998753 2335668999999999885 99999998764331 112234456788889998885322111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..++.||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|+++
T Consensus 143 ~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~ 219 (253)
T PRK14261 143 L-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTG 219 (253)
T ss_pred h-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEE
Confidence 1 344567999999999999999999999999999999999999999999999976 689999999986 4778999999
Q ss_pred EecCCEEEeeCChhhHH
Q 036088 314 FLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~ 330 (737)
+|++|+++..|+++++.
T Consensus 220 ~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 220 FMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EEECCEEEEcCCHHHHH
Confidence 99999999999987763
No 190
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=387.59 Aligned_cols=220 Identities=21% Similarity=0.354 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|
T Consensus 4 ~i~~~~l~~~~~--------------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~G~i 61 (501)
T PRK10762 4 LLQLKGIDKAFP--------------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD--AGSI 61 (501)
T ss_pred eEEEeeeEEEeC--------------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CcEE
Confidence 699999999995 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc---c-ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 162 TLNGEVLGSK---L-LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 162 ~~~G~~~~~~---~-~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
.++|+++... . .++.++||+|++.+++.+||+||+.++...... ......+.+++++++++.+||.+..+..++
T Consensus 62 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 140 (501)
T PRK10762 62 LYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG- 140 (501)
T ss_pred EECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-
Confidence 9999987532 1 245689999999999999999999987532211 112334445678999999999887766554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|+
T Consensus 141 ----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~ 215 (501)
T PRK10762 141 ----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFR 215 (501)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 69999999999999999999999999999999999999999999999878999999999986 5788999999999
Q ss_pred CCEEEeeCChhhH
Q 036088 317 NGQAVCSEAPSNL 329 (737)
Q Consensus 317 ~G~iv~~G~~~~~ 329 (737)
+|+++..|+++++
T Consensus 216 ~G~i~~~~~~~~~ 228 (501)
T PRK10762 216 DGQFIAEREVADL 228 (501)
T ss_pred CCEEEEecCcCcC
Confidence 9999999988764
No 191
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.5e-41 Score=350.58 Aligned_cols=229 Identities=28% Similarity=0.398 Sum_probs=183.7
Q ss_pred EEEeEEEEEecCcccCCCC--CccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 84 SFNNLSYSVKVGQKLLPDL--PFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 84 ~~~nls~~~~~~~~~~~~~--~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+++|+++.|...... +.+ ...+......+.+++|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|
T Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~--~G~i 78 (236)
T cd03267 2 EVSNLSKSYRVYSKE-PGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT--SGEV 78 (236)
T ss_pred ceecchhhccCcCCc-cccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ceEE
Confidence 467888888653310 000 00111111223467999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc--ccccceEEEEe-cCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 162 TLNGEVLGS--KLLKIISAYVM-QDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 162 ~~~G~~~~~--~~~~~~~~yV~-Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
.++|+++.. ...++.++|++ |++.+++.+||+||+.+..... .....+..++++++++.+|+.+..++.++
T Consensus 79 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 152 (236)
T cd03267 79 RVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR--- 152 (236)
T ss_pred EECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh---
Confidence 999987642 23456789998 5567888899999998865432 22344455678899999999887776654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||++||++. ++.++||++++|++
T Consensus 153 --~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~ 229 (236)
T cd03267 153 --QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK 229 (236)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC
Confidence 69999999999999999999999999999999999999999999999765 899999999986 57889999999999
Q ss_pred CEEEeeC
Q 036088 318 GQAVCSE 324 (737)
Q Consensus 318 G~iv~~G 324 (737)
|++++.|
T Consensus 230 G~i~~~g 236 (236)
T cd03267 230 GRLLYDG 236 (236)
T ss_pred CEEEecC
Confidence 9998765
No 192
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-41 Score=354.09 Aligned_cols=223 Identities=22% Similarity=0.342 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~ 158 (737)
+|+++||+++|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+.++. +.+
T Consensus 21 ~l~i~nl~~~~~--------------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~ 80 (276)
T PRK14271 21 AMAAVNLTLGFA--------------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYS 80 (276)
T ss_pred EEEEeeEEEEEC--------------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCc
Confidence 799999999996 256999999999999999999999999999999999998742 358
Q ss_pred eEEEECCEeCCc----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 159 GTVTLNGEVLGS----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 159 G~I~~~G~~~~~----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
|+|.++|.++.. ...++.++|++|++.+++ .||+||+.+..... ...+..+...++.++++.+|+.+..++..
T Consensus 81 G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l 157 (276)
T PRK14271 81 GDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL 157 (276)
T ss_pred eEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh
Confidence 999999998753 134567899999998888 79999998864322 11234444566788999999975332222
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+..+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+++|++++
T Consensus 158 -~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~ 234 (276)
T PRK14271 158 -SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAAL 234 (276)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 234567999999999999999999999999999999999999999999999976 589999999986 57889999999
Q ss_pred ecCCEEEeeCChhhHH
Q 036088 315 LSNGQAVCSEAPSNLS 330 (737)
Q Consensus 315 L~~G~iv~~G~~~~~~ 330 (737)
|++|+++..|+++++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 235 FFDGRLVEEGPTEQLF 250 (276)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988763
No 193
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-41 Score=362.05 Aligned_cols=226 Identities=19% Similarity=0.302 Sum_probs=190.6
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC---CC
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK---QR 156 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~---~~ 156 (737)
...|+++|++++|..+ .+.+|+|+||+|++||+++|+|||||||||||++|+|+.++ .+
T Consensus 78 ~~~i~~~nls~~y~~~------------------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p 139 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR------------------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTS 139 (329)
T ss_pred CceEEEEeeEEEecCC------------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCC
Confidence 3479999999999632 24699999999999999999999999999999999999753 24
Q ss_pred cceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCc-HHHHHHHHHHHHHHcCCcccc
Q 036088 157 LKGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLS-KEKKRKRVDALIDQLGLRSAA 230 (737)
Q Consensus 157 ~~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~ 230 (737)
.+|+|.++|+++.. ...++.++||||++.+++ .||+||+.|+.... ... ++..++.++++++.++|.+..
T Consensus 140 ~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l 215 (329)
T PRK14257 140 HEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEV 215 (329)
T ss_pred CceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchh
Confidence 58999999999853 235667899999999886 69999999875332 122 223345678889999886544
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
++.++ +.+..||||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++. .+.+.||
T Consensus 216 ~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~D 292 (329)
T PRK14257 216 KDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISD 292 (329)
T ss_pred hhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCC
Confidence 45554 56678999999999999999999999999999999999999999999999976 699999999986 4778899
Q ss_pred eEEEecCCEEEeeCChhhHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~ 330 (737)
+|++|++|++++.|+++++.
T Consensus 293 riivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 293 ETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999874
No 194
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-42 Score=406.73 Aligned_cols=227 Identities=26% Similarity=0.377 Sum_probs=196.7
Q ss_pred CCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 036088 79 YPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLK 158 (737)
Q Consensus 79 ~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~ 158 (737)
....|+++||+|+||.+. ..+||+|+|+++++|+.+||+|||||||||.+.+|-++++|. +
T Consensus 984 ~~G~I~~~~V~F~YPsRP-----------------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~--~ 1044 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPTRP-----------------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD--A 1044 (1228)
T ss_pred ceeEEEEeeeEeeCCCCC-----------------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC--C
Confidence 344799999999998542 478999999999999999999999999999999999998754 8
Q ss_pred eEEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 159 GTVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 159 G~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
|.|.+||++++. ..+|+.+|.|.|+|.||.. |++|||.|+..-....++.++.+.+.+++.+. +|++..||.||
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSEEVSEEEIIEAAKLANAHNFIS--SLPQGYDTRVG 1121 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCCCCCHHHHHHHHHHhhhHHHHh--cCcCcccCccC
Confidence 999999999875 3578889999999999997 99999999922111112233344556677776 55888999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
+ ++.+||||||||++||||+++||+||||||.||+||+++++.+.+.|.+.. .|+|.|++.|+++. .+.||.|.|+
T Consensus 1122 e-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~Vi 1197 (1228)
T KOG0055|consen 1122 E-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAVL 1197 (1228)
T ss_pred c-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEEE
Confidence 5 455799999999999999999999999999999999999999999999975 58999999999874 7999999999
Q ss_pred cCCEEEeeCChhhHHH
Q 036088 316 SNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 316 ~~G~iv~~G~~~~~~~ 331 (737)
++|++++.|+++++.+
T Consensus 1198 ~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1198 KNGKVVEQGTHDELLA 1213 (1228)
T ss_pred ECCEEEecccHHHHHh
Confidence 9999999999999875
No 195
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-41 Score=352.16 Aligned_cols=227 Identities=27% Similarity=0.378 Sum_probs=193.8
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Ccce
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RLKG 159 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G 159 (737)
|+++||+.+|.... +...+++||||++++||++||+|.|||||||+.+.|.|++++. ..+|
T Consensus 2 L~v~nL~v~f~~~~----------------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G 65 (316)
T COG0444 2 LEVKNLSVSFPTDA----------------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG 65 (316)
T ss_pred ceEeeeEEEEecCC----------------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeee
Confidence 78999999997532 2357999999999999999999999999999999999999731 3579
Q ss_pred EEEECCEeCCc---cc----ccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCC-cHHHHHHHHHHHHHHcCCccc
Q 036088 160 TVTLNGEVLGS---KL----LKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSL-SKEKKRKRVDALIDQLGLRSA 229 (737)
Q Consensus 160 ~I~~~G~~~~~---~~----~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~ 229 (737)
+|.++|+++.. +. ..+.++|+||++ .|-|.+||.+-+.-...... .. .+++.++++.++|+.+||.+-
T Consensus 66 ~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~ 143 (316)
T COG0444 66 EILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDP 143 (316)
T ss_pred EEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCH
Confidence 99999998743 21 124589999996 68999999999887665432 12 356678899999999999864
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhh
Q 036088 230 AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSL 308 (737)
Q Consensus 230 ~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~ 308 (737)
.. . -+.++.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.++|++|||+. -+.++
T Consensus 144 ~~-~-~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~ 220 (316)
T COG0444 144 ER-R-LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEI 220 (316)
T ss_pred HH-H-HhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHh
Confidence 22 2 2567889999999999999999999999999999999999999999999999987 5999999999987 48999
Q ss_pred cceEEEecCCEEEeeCChhhHH
Q 036088 309 LDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 309 ~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
||||.||..|++|+.|+++++.
T Consensus 221 aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 221 ADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred cceEEEEECcEEEEeCCHHHHh
Confidence 9999999999999999998763
No 196
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.3e-42 Score=397.22 Aligned_cols=217 Identities=29% Similarity=0.485 Sum_probs=188.0
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+|+|+.. ++++|+|+|+++++||.+||+||||||||||+++|+|+++|. +|+
T Consensus 337 ~~i~~~~v~f~y~~~------------------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~--~G~ 396 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ------------------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ--QGE 396 (574)
T ss_pred CeEEEEEEEEECCCC------------------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--Cce
Confidence 469999999999632 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc------ccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS------AAM 231 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~ 231 (737)
|.+||+++.+ ..+|+.++||+|++.+|+. |++||+.++.. +. .++.+.+.++..++.+ ..|
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~----~~~~i~~al~~~~l~~~i~~p~Gld 466 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----NA----SDEALIEVLQQVGLEKLLEDDKGLN 466 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----cc----CHHHHHHHHHHcCCHHHHcCccccC
Confidence 9999998864 3567789999999999986 99999998642 11 2345667777777754 467
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
|.+|+ .+..||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.||+
T Consensus 467 T~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~ 542 (574)
T PRK11160 467 AWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDR 542 (574)
T ss_pred chhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCE
Confidence 88874 466799999999999999999999999999999999999999999999986 48999999999864 567999
Q ss_pred EEEecCCEEEeeCChhhHHH
Q 036088 312 LIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~~ 331 (737)
|++|++|++++.|+++++.+
T Consensus 543 i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 543 ICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999988754
No 197
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-41 Score=352.98 Aligned_cols=224 Identities=22% Similarity=0.320 Sum_probs=183.8
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--C-CCc
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRIS--K-QRL 157 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~-~~~ 157 (737)
.+|+++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ + .+.
T Consensus 20 ~~l~~~~l~~~~~--------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~ 79 (268)
T PRK14248 20 HILEVKDLSIYYG--------------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS 79 (268)
T ss_pred ceEEEEEEEEEeC--------------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC
Confidence 3799999999995 2459999999999999999999999999999999999853 1 135
Q ss_pred ceEEEECCEeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc
Q 036088 158 KGTVTLNGEVLGSK-----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 158 ~G~I~~~G~~~~~~-----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 232 (737)
+|+|.++|+++... ..++.++|++|++.+++. ||+||+.+...... .......++.+.+.++.+++......
T Consensus 80 ~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 156 (268)
T PRK14248 80 EGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKD 156 (268)
T ss_pred ceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHH
Confidence 89999999987531 245678999999998885 99999988643221 11223335567888999888521111
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.. +..+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++
T Consensus 157 ~~-~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v 233 (268)
T PRK14248 157 RL-HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRT 233 (268)
T ss_pred HH-hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEE
Confidence 11 234557999999999999999999999999999999999999999999999965 689999999986 478899999
Q ss_pred EEecCCEEEeeCChhhHH
Q 036088 313 IFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~ 330 (737)
++|++|++++.|+++++.
T Consensus 234 ~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 234 AFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999887663
No 198
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=7.9e-41 Score=351.33 Aligned_cols=218 Identities=23% Similarity=0.319 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 6 ~l~~~~l~~~~~--------------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i 63 (258)
T PRK11701 6 LLSVRGLTKLYG--------------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD--AGEV 63 (258)
T ss_pred eEEEeeeEEEcC--------------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEE
Confidence 699999999995 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEe-----CCcc---c----ccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc
Q 036088 162 TLNGEV-----LGSK---L----LKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR 227 (737)
Q Consensus 162 ~~~G~~-----~~~~---~----~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 227 (737)
.++|++ +... . .++.++||+|++ .+++.+|+.||+.+...... .....+.+++++++++.+++.
T Consensus 64 ~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~ 141 (258)
T PRK11701 64 HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEID 141 (258)
T ss_pred EECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCC
Confidence 999997 5431 1 234589999997 46778899999976432111 112233456788999999996
Q ss_pred c-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHH
Q 036088 228 S-AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRI 305 (737)
Q Consensus 228 ~-~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 305 (737)
+ ..++. +..||||||||++|||+|+.+|++|||||||+|||+.+...+.+.|++++++ |.|||++||++. .+
T Consensus 142 ~~~~~~~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~ 215 (258)
T PRK11701 142 AARIDDL-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VA 215 (258)
T ss_pred hhHHhCC-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HH
Confidence 3 44443 4579999999999999999999999999999999999999999999999765 899999999986 47
Q ss_pred HhhcceEEEecCCEEEeeCChhhH
Q 036088 306 LSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 306 ~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
.+.||++++|++|++++.|+++++
T Consensus 216 ~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 216 RLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHH
Confidence 789999999999999999988775
No 199
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=349.10 Aligned_cols=222 Identities=22% Similarity=0.321 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~ 158 (737)
.|+++||+++|. .+.+|+|+|++|++|++++|+||||||||||+++|+|+.++. +.+
T Consensus 4 ~l~~~~l~~~~~--------------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~ 63 (251)
T PRK14249 4 KIKIRGVNFFYH--------------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLE 63 (251)
T ss_pred eEEEEEEEEEEC--------------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcc
Confidence 689999999995 245999999999999999999999999999999999998753 136
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|+++.. ...++.++||+|++.+++. ||+||+.+....+.. ..++...+.+++.++.+++.+.....
T Consensus 64 G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~ 140 (251)
T PRK14249 64 GAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDN 140 (251)
T ss_pred cEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhH
Confidence 999999998742 1346678999999999885 999999987543211 11223345678888888875322122
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||++. .+.+.||+++
T Consensus 141 ~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~ 217 (251)
T PRK14249 141 L-HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTG 217 (251)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEE
Confidence 2 34456799999999999999999999999999999999999999999999995 5899999999986 4788999999
Q ss_pred EecCCEEEeeCChhhH
Q 036088 314 FLSNGQAVCSEAPSNL 329 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~ 329 (737)
+|++|++++.|+++++
T Consensus 218 ~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 218 FLLTGDLVEYGRTGEI 233 (251)
T ss_pred EEeCCeEEEeCCHHHH
Confidence 9999999999998776
No 200
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-41 Score=343.25 Aligned_cols=191 Identities=35% Similarity=0.479 Sum_probs=166.5
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCc-------ccccceEEEEecCCCCCCCCCH
Q 036088 120 DISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS-------KLLKIISAYVMQDDLLYSMLTI 192 (737)
Q Consensus 120 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-------~~~~~~~~yV~Q~~~l~~~lTV 192 (737)
|+||++++ |+++|+||||||||||+++|+|++++. +|+|.++|+++.. ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD--GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 999999999999999999999998754 8999999998742 1235568999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 036088 193 EETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGL 272 (737)
Q Consensus 193 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgL 272 (737)
+||+.+..... .....+++++++++.+|+.+..+..+ +.||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998865321 22344567899999999987665544 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEEEeeC
Q 036088 273 DSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSE 324 (737)
Q Consensus 273 D~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 324 (737)
|+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999875 899999999986 477899999999999998765
No 201
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-41 Score=387.23 Aligned_cols=220 Identities=22% Similarity=0.348 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++|+ .+.+|+|+||++++||+++|+||||||||||||+|+|+.++. +|+|
T Consensus 5 ~l~~~~l~~~~~--------------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~--~G~i 62 (510)
T PRK09700 5 YISMAGIGKSFG--------------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTI 62 (510)
T ss_pred eEEEeeeEEEcC--------------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC--ccEE
Confidence 699999999995 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcC-CCC---CcHHHHHHHHHHHHHHcCCccccccc
Q 036088 162 TLNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRL-PRS---LSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 162 ~~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
.++|+++.... .++.++||+|++.+++.+||+||+.++..... ... ....+.+++++++++.+||.+..++.
T Consensus 63 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 142 (510)
T PRK09700 63 TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK 142 (510)
T ss_pred EECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc
Confidence 99999885421 23468999999999999999999987642110 001 12334557889999999998777665
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
++ .|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||+++
T Consensus 143 ~~-----~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~ 216 (510)
T PRK09700 143 VA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYT 216 (510)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 54 69999999999999999999999999999999999999999999999888999999999986 4788999999
Q ss_pred EecCCEEEeeCChhhH
Q 036088 314 FLSNGQAVCSEAPSNL 329 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~ 329 (737)
+|++|++++.|+++++
T Consensus 217 ~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 217 VMKDGSSVCSGMVSDV 232 (510)
T ss_pred EEECCEEeeecchhhC
Confidence 9999999999988764
No 202
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=8.8e-42 Score=405.87 Aligned_cols=216 Identities=23% Similarity=0.358 Sum_probs=181.6
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+|+|+... ++++|+|+|++++|||.+||+||||||||||+|+|+|+++|. +|+
T Consensus 477 ~~I~~~nVsf~Y~~~~-----------------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~ 537 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRP-----------------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT--GGQ 537 (711)
T ss_pred CeEEEEEEEEECCCCC-----------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCE
Confidence 3699999999997321 256999999999999999999999999999999999998854 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-------cccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-------RSAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~ 230 (737)
|.+||+++.+ ..+++.++||+|++.+|+. |++|||.++... .+ ++.+.++++..++ ++..
T Consensus 538 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~~-----~~----~e~i~~al~~a~l~~~i~~lp~Gl 607 (711)
T TIGR00958 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTD-----TP----DEEIMAAAKAANAHDFIMEFPNGY 607 (711)
T ss_pred EEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCCC-----CC----HHHHHHHHHHcCCHHHHHhCCCcc
Confidence 9999999864 4567789999999999986 999999986421 12 2234444555444 3456
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
||.+|+ .+..||||||||++|||||+++|+||+||||||+||+.++..+.+ .. ..+++|+|+++|+++ ..+.+|
T Consensus 608 dT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD 681 (711)
T TIGR00958 608 DTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERAD 681 (711)
T ss_pred CCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCC
Confidence 888874 466799999999999999999999999999999999999999998 22 235899999999985 467899
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++|++++.|+++++.+
T Consensus 682 ~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 682 QILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEEEECCEEEEeeCHHHHHh
Confidence 999999999999999998864
No 203
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=350.76 Aligned_cols=224 Identities=21% Similarity=0.329 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~ 158 (737)
.|+++|++++|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.++. ..+
T Consensus 7 ~l~~~nl~~~~~--------------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~ 66 (261)
T PRK14258 7 AIKVNNLSFYYD--------------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVE 66 (261)
T ss_pred eEEEeeEEEEeC--------------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCcccc
Confidence 699999999995 235999999999999999999999999999999999998753 137
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|+++.. ...++.++|++|+..+++ +||+||+.+...... ..+..+..+++.++++.+++.+..+..
T Consensus 67 G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 143 (261)
T PRK14258 67 GRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHK 143 (261)
T ss_pred ceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhH
Confidence 999999998742 134566899999988888 799999988653321 112334456788999999985432222
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
. +..+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ +|+|||++||++. ++.++||++
T Consensus 144 ~-~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i 221 (261)
T PRK14258 144 I-HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFT 221 (261)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEE
Confidence 2 344567999999999999999999999999999999999999999999999875 4899999999986 588999999
Q ss_pred EEecC-----CEEEeeCChhhHH
Q 036088 313 IFLSN-----GQAVCSEAPSNLS 330 (737)
Q Consensus 313 ~lL~~-----G~iv~~G~~~~~~ 330 (737)
++|++ |++++.|+++++.
T Consensus 222 ~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 222 AFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EEEccCCCcCceEEEeCCHHHHH
Confidence 99999 9999999998874
No 204
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.6e-41 Score=351.89 Aligned_cols=215 Identities=29% Similarity=0.489 Sum_probs=173.7
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.
T Consensus 1 i~~~~l~~~~~~~------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~ 60 (237)
T cd03252 1 ITFEHVRFRYKPD------------------GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE--NGRVL 60 (237)
T ss_pred CEEEEEEEecCCC------------------CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEE
Confidence 4689999998521 246999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHH-----HHHHHHHHHHHc--CCcccccc
Q 036088 163 LNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEK-----KRKRVDALIDQL--GLRSAAMT 232 (737)
Q Consensus 163 ~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~ 232 (737)
++|+++.. ...++.++|++|++.+++ .||.||+.+.... ..... ....++++++.+ ++....+
T Consensus 61 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~- 133 (237)
T cd03252 61 VDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVG- 133 (237)
T ss_pred ECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhh-
Confidence 99998743 234567899999998876 5999999875321 11111 111234455554 3333332
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
..+..|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++++ |+|||++||++.. + +.||++
T Consensus 134 ----~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v 206 (237)
T cd03252 134 ----EQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRI 206 (237)
T ss_pred ----cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEE
Confidence 34567999999999999999999999999999999999999999999999974 8999999999864 5 579999
Q ss_pred EEecCCEEEeeCChhhHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~ 331 (737)
++|++|++++.|+++++..
T Consensus 207 ~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 207 IVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred EEEECCEEEEEcCHHHHHh
Confidence 9999999999999877643
No 205
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=8.1e-41 Score=350.50 Aligned_cols=222 Identities=21% Similarity=0.314 Sum_probs=183.2
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC--Cc
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ--RL 157 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~--~~ 157 (737)
|..|+++||+++|+ +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.
T Consensus 2 ~~~l~~~~l~~~~~---------------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~ 60 (254)
T PRK10418 2 PQQIELRNIALQAA---------------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60 (254)
T ss_pred CcEEEEeCeEEEec---------------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc
Confidence 44799999999982 34899999999999999999999999999999999998751 15
Q ss_pred ceEEEECCEeCCcccc-cceEEEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 158 KGTVTLNGEVLGSKLL-KIISAYVMQDDL--LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 158 ~G~I~~~G~~~~~~~~-~~~~~yV~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
+|+|.++|+++..... ++.++||+|++. +.+.+|+.+++.+.+... .... ..+++.++++.++|.+.. +..
T Consensus 61 ~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~-~~~ 134 (254)
T PRK10418 61 AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAA-RVL 134 (254)
T ss_pred CCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChh-hhh
Confidence 8999999998864332 356899999974 456679999987654321 1111 236789999999997521 111
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
+..+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+++|+++
T Consensus 135 -~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~ 212 (254)
T PRK10418 135 -KLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVA 212 (254)
T ss_pred -hcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEE
Confidence 2334579999999999999999999999999999999999999999999999764 899999999986 4778999999
Q ss_pred EecCCEEEeeCChhhHH
Q 036088 314 FLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~ 330 (737)
+|++|+++..|+++++.
T Consensus 213 ~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 213 VMSHGRIVEQGDVETLF 229 (254)
T ss_pred EEECCEEEEecCHHHHh
Confidence 99999999999987763
No 206
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.6e-41 Score=396.85 Aligned_cols=215 Identities=23% Similarity=0.375 Sum_probs=186.1
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++|++|+|+. ++++|+|+|+++++||.+||+|+||||||||+|+|+|+++|. +|+
T Consensus 339 ~~i~~~~v~f~y~~-------------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~--~G~ 397 (592)
T PRK10790 339 GRIDIDNVSFAYRD-------------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT--EGE 397 (592)
T ss_pred CeEEEEEEEEEeCC-------------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--Cce
Confidence 36999999999962 245999999999999999999999999999999999998865 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-------ccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-------SAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~ 230 (737)
|.+||.+++. ..+++.++||+|++.+|++ |++|||.++.. .+ +++++++++.+|+. +..
T Consensus 398 I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~------~~----d~~i~~a~~~~gl~~~i~~lp~Gl 466 (592)
T PRK10790 398 IRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD------IS----EEQVWQALETVQLAELARSLPDGL 466 (592)
T ss_pred EEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC------CC----HHHHHHHHHHcCcHHHHHhccccc
Confidence 9999998864 4578889999999999998 99999998631 12 23455566666543 456
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
||.+|+ .+..||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++.+ ++|+|++||+++ ..+.||
T Consensus 467 dt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D 542 (592)
T PRK10790 467 YTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEAD 542 (592)
T ss_pred cccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCC
Confidence 788875 5567999999999999999999999999999999999999999999999865 699999999985 477899
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++|+++..|+++++.+
T Consensus 543 ~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 543 TILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999998853
No 207
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4.8e-41 Score=347.14 Aligned_cols=201 Identities=31% Similarity=0.426 Sum_probs=172.2
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHH
Q 036088 118 LDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLM 197 (737)
Q Consensus 118 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~ 197 (737)
|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.++|+++..... ..+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999999875 48999999998754222 2489999999999999999998
Q ss_pred HhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 036088 198 FSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSA 277 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~ 277 (737)
+......+ ...+.+.+++++++++.+||.+..++.+ +.||||||||++|||+|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 86421111 2334455667899999999987666554 46999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhH
Q 036088 278 FNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 278 ~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++..|+..++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 9999999999865 899999999986 57889999999999999988865443
No 208
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=351.83 Aligned_cols=224 Identities=19% Similarity=0.320 Sum_probs=182.9
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--C-CC
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRIS--K-QR 156 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~-~~ 156 (737)
+.+|+++|+++.|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+.+ + .+
T Consensus 22 ~~~l~~~~l~~~~~--------------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~ 81 (271)
T PRK14238 22 KVVFDTQNLNLWYG--------------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVK 81 (271)
T ss_pred ceEEEEeeeEEEEC--------------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCC
Confidence 34799999999996 2459999999999999999999999999999999999975 1 13
Q ss_pred cceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 157 LKGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 157 ~~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
.+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.++..... ...+...++.+.+.++.+++.....
T Consensus 82 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~ 158 (271)
T PRK14238 82 TTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELK 158 (271)
T ss_pred CceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHH
Confidence 58999999998742 1345678999999988885 99999998754321 1122233456777788776532111
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
... +..+..||||||||++|||+|+.+|++|||||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.++||+
T Consensus 159 ~~~-~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~ 235 (271)
T PRK14238 159 DRL-HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDK 235 (271)
T ss_pred HHH-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCE
Confidence 111 234567999999999999999999999999999999999999999999999976 799999999986 47889999
Q ss_pred EEEecCCEEEeeCChhhH
Q 036088 312 LIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~ 329 (737)
+++|++|+++..|+++++
T Consensus 236 i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 236 TAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999988766
No 209
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=350.32 Aligned_cols=223 Identities=21% Similarity=0.336 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-C--cc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ-R--LK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~--~~ 158 (737)
.|+++|+++.|+ .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+.++. + .+
T Consensus 7 ~l~~~~l~~~~~--------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~ 66 (259)
T PRK14260 7 AIKVKDLSFYYN--------------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVE 66 (259)
T ss_pred eEEEEEEEEEEC--------------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccc
Confidence 699999999995 245999999999999999999999999999999999998743 2 48
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|+++.. ...++.++||+|++.+++ +||+||+.++...+. ..++....++++++++.+|+.+.....
T Consensus 67 G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~ 143 (259)
T PRK14260 67 GVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDK 143 (259)
T ss_pred eEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhH
Confidence 999999998742 124556899999999888 799999988754321 123344456788899999884321111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||+++
T Consensus 144 ~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~ 220 (259)
T PRK14260 144 L-NKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTA 220 (259)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEE
Confidence 1 334567999999999999999999999999999999999999999999999975 689999999986 5889999999
Q ss_pred Eec-----CCEEEeeCChhhHH
Q 036088 314 FLS-----NGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~-----~G~iv~~G~~~~~~ 330 (737)
+|+ +|++++.|+++++.
T Consensus 221 ~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 221 FFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EEeccCCCCceEEEeCCHHHHh
Confidence 997 59999999988763
No 210
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=347.81 Aligned_cols=222 Identities=22% Similarity=0.348 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--C-Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK--Q-RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~--~-~~~ 158 (737)
+|+++|++++|+ .+.+|+|+|++|++||+++|+||||||||||+++|+|++++ . +.+
T Consensus 4 ~l~~~~l~~~~~--------------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~ 63 (251)
T PRK14251 4 IISAKDVHLSYG--------------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT 63 (251)
T ss_pred eEEEEeeEEEEC--------------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcc
Confidence 689999999995 24699999999999999999999999999999999999852 1 358
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+...... .......+++++++++.+++.......
T Consensus 64 G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 140 (251)
T PRK14251 64 GEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDN 140 (251)
T ss_pred eEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHH
Confidence 999999998742 124566899999998887 699999988654321 112233446788899999985221111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+++
T Consensus 141 ~-~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~ 217 (251)
T PRK14251 141 L-DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTA 217 (251)
T ss_pred h-ccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEE
Confidence 1 234567999999999999999999999999999999999999999999999964 789999999986 4788999999
Q ss_pred EecCCEEEeeCChhhH
Q 036088 314 FLSNGQAVCSEAPSNL 329 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~ 329 (737)
+|++|+++..|+++++
T Consensus 218 ~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 218 FLMNGDLIEAGPTEEM 233 (251)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999988775
No 211
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=346.81 Aligned_cols=223 Identities=20% Similarity=0.305 Sum_probs=182.7
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--CC-Cc
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRIS--KQ-RL 157 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~~-~~ 157 (737)
.+|+++||++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.+ +. +.
T Consensus 4 ~~l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~ 63 (252)
T PRK14255 4 KIITSSDVHLFYG--------------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTI 63 (252)
T ss_pred ceEEEEeEEEEEC--------------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCc
Confidence 4799999999996 2459999999999999999999999999999999999864 21 24
Q ss_pred ceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc
Q 036088 158 KGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 158 ~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 232 (737)
+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....+.. ......++++.+.++.+++......
T Consensus 64 ~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~ 140 (252)
T PRK14255 64 TGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKD 140 (252)
T ss_pred ccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhh
Confidence 8999999998742 134567899999998888 6999999987543211 1122234567788888877422111
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.. +..+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++
T Consensus 141 ~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i 217 (252)
T PRK14255 141 HL-HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKT 217 (252)
T ss_pred HH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEE
Confidence 11 234567999999999999999999999999999999999999999999999976 589999999986 578899999
Q ss_pred EEecCCEEEeeCChhhH
Q 036088 313 IFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~ 329 (737)
++|++|+++..|++.++
T Consensus 218 ~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 218 AFFLTGNLIEFADTKQM 234 (252)
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999988776
No 212
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-41 Score=335.48 Aligned_cols=189 Identities=42% Similarity=0.715 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++|+++.|+.+. +.+.+|+|+|+++++||+++|+|||||||||||++|+|+....+.+|+|
T Consensus 3 ~l~~~~l~~~~~~~~----------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i 66 (192)
T cd03232 3 VLTWKNLNYTVPVKG----------------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI 66 (192)
T ss_pred EEEEeeeEEEecCCC----------------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Confidence 589999999996321 1246999999999999999999999999999999999986433458999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
.++|+++. ...++.++|++|++.+++.+||+||+.++... + .
T Consensus 67 ~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~ 108 (192)
T cd03232 67 LINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------G 108 (192)
T ss_pred EECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------c
Confidence 99999875 34556789999999999999999999875311 0 4
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC-CEE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN-GQA 320 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~i 320 (737)
||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++..++.+.||++++|++ |++
T Consensus 109 LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i 188 (192)
T cd03232 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKT 188 (192)
T ss_pred CCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeE
Confidence 9999999999999999999999999999999999999999999999877999999999986446789999999999 999
Q ss_pred EeeC
Q 036088 321 VCSE 324 (737)
Q Consensus 321 v~~G 324 (737)
++.|
T Consensus 189 ~~~g 192 (192)
T cd03232 189 VYFG 192 (192)
T ss_pred EeCC
Confidence 9865
No 213
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.1e-40 Score=382.69 Aligned_cols=213 Identities=24% Similarity=0.389 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ .+.+|+|+||++++|++++|+||||||||||||+|+|++++. +|+|
T Consensus 11 ~l~~~~l~~~~~--------------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i 68 (510)
T PRK15439 11 LLCARSISKQYS--------------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTL 68 (510)
T ss_pred eEEEEeEEEEeC--------------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEE
Confidence 799999999995 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.++|+++.... .++.+|||+|++.+++.+||+||+.+.... ..+.+++++++++.+||.+..++.++
T Consensus 69 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~-- 139 (510)
T PRK15439 69 EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAG-- 139 (510)
T ss_pred EECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChh--
Confidence 99999875321 224589999999999999999999886421 12345678999999999877766554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++
T Consensus 140 ---~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~ 215 (510)
T PRK15439 140 ---SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD 215 (510)
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999999888999999999986 47889999999999
Q ss_pred CEEEeeCChhhH
Q 036088 318 GQAVCSEAPSNL 329 (737)
Q Consensus 318 G~iv~~G~~~~~ 329 (737)
|++++.|+++++
T Consensus 216 G~i~~~g~~~~~ 227 (510)
T PRK15439 216 GTIALSGKTADL 227 (510)
T ss_pred CEEEEecChHHc
Confidence 999999988765
No 214
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.3e-41 Score=405.15 Aligned_cols=217 Identities=26% Similarity=0.416 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+|+|+. ++++|+|+|++|++||.+||+||||||||||+++|+|+++|. +|+|
T Consensus 473 ~I~~~~vsf~y~~-------------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~--~G~I 531 (708)
T TIGR01193 473 DIVINDVSYSYGY-------------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR--SGEI 531 (708)
T ss_pred cEEEEEEEEEcCC-------------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC--CcEE
Confidence 6999999999962 246999999999999999999999999999999999998854 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHH-----HHHHHHHHHHHcCCccccccc
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEK-----KRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~ 233 (737)
++||.++.+ ..+|+.+|||+|++.+|+. ||+|||.++... ..++++ +...+++.++.+ +...||.
T Consensus 532 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~----~~~~~~i~~a~~~a~l~~~i~~l--p~gldt~ 604 (708)
T TIGR01193 532 LLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKE----NVSQDEIWAACEIAEIKDDIENM--PLGYQTE 604 (708)
T ss_pred EECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCC----CCCHHHHHHHHHHhCCHHHHHhc--ccccCcE
Confidence 999998754 4578889999999999997 999999986321 122222 122334444433 3456888
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
+|+ .+..||||||||++|||||+++|+||+||||||+||+.++..+++.|+++ +++|+|+++|+++ ..+.||+|+
T Consensus 605 i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~ 679 (708)
T TIGR01193 605 LSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKII 679 (708)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEE
Confidence 875 56679999999999999999999999999999999999999999999985 4799999999986 468899999
Q ss_pred EecCCEEEeeCChhhHHH
Q 036088 314 FLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++++.|+++++.+
T Consensus 680 ~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 680 VLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEECCEEEEECCHHHHHh
Confidence 999999999999998864
No 215
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=350.82 Aligned_cols=223 Identities=19% Similarity=0.258 Sum_probs=183.9
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---C
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---R 156 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~ 156 (737)
+.+|+++||++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +
T Consensus 18 ~~~l~~~nl~~~~~--------------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~ 77 (274)
T PRK14265 18 HSVFEVEGVKVFYG--------------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK 77 (274)
T ss_pred CceEEEeeEEEEeC--------------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCC
Confidence 45899999999995 245999999999999999999999999999999999997532 2
Q ss_pred cceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 157 LKGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 157 ~~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
.+|+|.++|+++.. ...++.++|++|++.+++. ||.||+.+....+. .. ...++.+++.++.+++.....
T Consensus 78 ~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~ 152 (274)
T PRK14265 78 VEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVK 152 (274)
T ss_pred cCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhH
Confidence 48999999998742 2345678999999988875 99999988654321 11 122345677888888742211
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
... +..+..|||||||||+|||||+.+|++|||||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.++||+
T Consensus 153 ~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~ 229 (274)
T PRK14265 153 DKL-KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADW 229 (274)
T ss_pred HHh-cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 111 234567999999999999999999999999999999999999999999999975 789999999986 58899999
Q ss_pred EEEec---------CCEEEeeCChhhHH
Q 036088 312 LIFLS---------NGQAVCSEAPSNLS 330 (737)
Q Consensus 312 v~lL~---------~G~iv~~G~~~~~~ 330 (737)
+++|+ +|++++.|+++++.
T Consensus 230 i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 230 TAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEEEecccccccccCceEEEeCCHHHHH
Confidence 99997 79999999998873
No 216
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-42 Score=325.85 Aligned_cols=218 Identities=25% Similarity=0.409 Sum_probs=192.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||.++|. ...+|++||++.++|+++.|+|.|||||||+|+||.-+..|. .|+|
T Consensus 6 ~l~v~dlHK~~G--------------------~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~--~G~I 63 (256)
T COG4598 6 ALEVEDLHKRYG--------------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--AGSI 63 (256)
T ss_pred ceehhHHHhhcc--------------------cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC--CceE
Confidence 588889998886 356999999999999999999999999999999999997654 8999
Q ss_pred EECCEeCCc----------------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcC
Q 036088 162 TLNGEVLGS----------------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLG 225 (737)
Q Consensus 162 ~~~G~~~~~----------------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 225 (737)
.+||+.+.- ..+|.+.|+|+|+..|++++||.||+.-+----+ ..++.+..++++.+|+++|
T Consensus 64 ~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVG 141 (256)
T COG4598 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVG 141 (256)
T ss_pred EECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhC
Confidence 999987732 1234456999999999999999999976432111 4577888899999999999
Q ss_pred CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHH
Q 036088 226 LRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRI 305 (737)
Q Consensus 226 L~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 305 (737)
+.+.+|.. +..|||||+||++|||||+.+|+++++|||||+|||+..-++++.+++|+++|+|.+++||.+.. .
T Consensus 142 i~ek~~~Y-----P~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-A 215 (256)
T COG4598 142 IAEKADAY-----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-A 215 (256)
T ss_pred chhhhhcC-----ccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-H
Confidence 99877644 55799999999999999999999999999999999999999999999999999999999999864 7
Q ss_pred HhhcceEEEecCCEEEeeCChhhH
Q 036088 306 LSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 306 ~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
.+...+|++|++|.+-+.|+|+++
T Consensus 216 R~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 216 RDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred HhhhhheEEeecceecccCChHHH
Confidence 889999999999999999999987
No 217
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=7.2e-41 Score=339.53 Aligned_cols=189 Identities=32% Similarity=0.515 Sum_probs=163.9
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCc---c----cccceEEEEecCCCCC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS---K----LLKIISAYVMQDDLLY 187 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~----~~~~~~~yV~Q~~~l~ 187 (737)
+++|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.++|+++.. . ..++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD--SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 46999999999999999999999999999999999998754 8999999998531 1 2345789999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 036088 188 SMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDE 267 (737)
Q Consensus 188 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDE 267 (737)
+.+||+||+.+..... .....+..++++++++.+|+.+..++.+ +.||||||||++|||+|+.+|++|||||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 2234455678899999999987766554 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 268 PISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 268 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
||+|||+.+...+.+.|++++++|.|+|+++|++. ..+.||++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999877999999999985 35789999875
No 218
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.5e-40 Score=341.11 Aligned_cols=211 Identities=31% Similarity=0.500 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|+.+ .+.+.+|+|+||++++|++++|+||||||||||+++|+|++++ .+|+|.
T Consensus 2 l~~~~l~~~~~~~----------------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~ 63 (220)
T TIGR02982 2 ISIRNLNHYYGHG----------------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLK 63 (220)
T ss_pred EEEEEEEEEccCC----------------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEE
Confidence 7899999998531 0125699999999999999999999999999999999999874 489999
Q ss_pred ECCEeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 163 LNGEVLGSK------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 163 ~~G~~~~~~------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
++|+++... ..++.++|++|++.+++.+|+.||+.+...... .....+..++++++++.+||.+..++.+
T Consensus 64 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 139 (220)
T TIGR02982 64 VLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-- 139 (220)
T ss_pred ECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh--
Confidence 999987531 245678999999999998999999998754321 1334455678999999999987665544
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .++|||+++|++. +.++||++++|
T Consensus 140 ---~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l 214 (220)
T TIGR02982 140 ---HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHM 214 (220)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEE
Confidence 47999999999999999999999999999999999999999999999986 4899999999975 46899999999
Q ss_pred cCCEE
Q 036088 316 SNGQA 320 (737)
Q Consensus 316 ~~G~i 320 (737)
++|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
No 219
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=350.81 Aligned_cols=222 Identities=22% Similarity=0.365 Sum_probs=183.9
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC---CC
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK---QR 156 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~---~~ 156 (737)
+.+|+++||++.|. .+.+|+|+||+|++||+++|+|||||||||||++|+|++++ .+
T Consensus 37 ~~~l~i~~l~~~~~--------------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p 96 (285)
T PRK14254 37 ETVIEARDLNVFYG--------------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96 (285)
T ss_pred CceEEEEEEEEEEC--------------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCC
Confidence 34799999999995 24599999999999999999999999999999999999863 13
Q ss_pred cceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 157 LKGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 157 ~~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
.+|+|.++|+++.. ...++.++||+|++.+++. ||.||+.+....+. ... ...++++++++.+||.+...
T Consensus 97 ~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~ 171 (285)
T PRK14254 97 VEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVK 171 (285)
T ss_pred CceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhH
Confidence 58999999998742 2345678999999988886 99999998754321 222 34567899999999853211
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
... +..+..||||||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||+
T Consensus 172 ~~~-~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dr 248 (285)
T PRK14254 172 DQL-DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDK 248 (285)
T ss_pred HHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCE
Confidence 111 234567999999999999999999999999999999999999999999999986 489999999986 57889999
Q ss_pred EE-EecCCEEEeeCChhhH
Q 036088 312 LI-FLSNGQAVCSEAPSNL 329 (737)
Q Consensus 312 v~-lL~~G~iv~~G~~~~~ 329 (737)
++ +|++|+++..|+++++
T Consensus 249 i~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 249 TAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred EEEEeeCCEEEEeCCHHHH
Confidence 75 6799999999988765
No 220
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=353.42 Aligned_cols=224 Identities=20% Similarity=0.306 Sum_probs=183.9
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--CC-Cc
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRIS--KQ-RL 157 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~~-~~ 157 (737)
..|+++||++.|+ .+.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +. +.
T Consensus 38 ~~l~~~~l~~~~~--------------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~ 97 (286)
T PRK14275 38 PHVVAKNFSIYYG--------------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT 97 (286)
T ss_pred eEEEEeeeEEEEC--------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC
Confidence 3799999999995 2359999999999999999999999999999999999854 21 25
Q ss_pred ceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc
Q 036088 158 KGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 158 ~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 232 (737)
+|+|.++|+++.. ...++.++||+|++.+++. ||.||+.+....+. ..+....++++.++++.+|+......
T Consensus 98 ~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~ 174 (286)
T PRK14275 98 TGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSD 174 (286)
T ss_pred ceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhh
Confidence 8999999998742 1245678999999988885 99999998754321 11223345678888999887421101
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.. +..+..||||||||++|||+|+.+|++|||||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.++||++
T Consensus 175 ~~-~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i 251 (286)
T PRK14275 175 RL-DKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYT 251 (286)
T ss_pred Hh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEE
Confidence 11 234557999999999999999999999999999999999999999999999975 689999999986 478899999
Q ss_pred EEecCCEEEeeCChhhHH
Q 036088 313 IFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~ 330 (737)
++|++|+++..|+++++.
T Consensus 252 ~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 252 MFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999987763
No 221
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.2e-40 Score=381.81 Aligned_cols=222 Identities=21% Similarity=0.341 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+++|+ .+.+|+||||++++||+++|+|||||||||||++|+|+.++.+.+|+|
T Consensus 1 ~l~i~~l~~~~~--------------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i 60 (500)
T TIGR02633 1 LLEMKGIVKTFG--------------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60 (500)
T ss_pred CEEEEeEEEEeC--------------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE
Confidence 378999999995 246999999999999999999999999999999999998653358999
Q ss_pred EECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCC-CCcHHHHHHHHHHHHHHcCCcccc-ccccc
Q 036088 162 TLNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPR-SLSKEKKRKRVDALIDQLGLRSAA-MTIIG 235 (737)
Q Consensus 162 ~~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg 235 (737)
.++|+++.... .++.++||+|++.+++.+||+||+.++....... ....++..++++++++.+||.+.. ++.+
T Consensus 61 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 139 (500)
T TIGR02633 61 YWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV- 139 (500)
T ss_pred EECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-
Confidence 99999885421 2456899999999999999999998865432110 123344557889999999997654 3334
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
+.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|++++++|+|||++||++. .+.++||++++|
T Consensus 140 ----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l 214 (500)
T TIGR02633 140 ----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVI 214 (500)
T ss_pred ----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999999888999999999986 578899999999
Q ss_pred cCCEEEeeCChhhH
Q 036088 316 SNGQAVCSEAPSNL 329 (737)
Q Consensus 316 ~~G~iv~~G~~~~~ 329 (737)
++|+++..|++++.
T Consensus 215 ~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 215 RDGQHVATKDMSTM 228 (500)
T ss_pred eCCeEeeecCcccC
Confidence 99999999887653
No 222
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.7e-40 Score=334.21 Aligned_cols=190 Identities=49% Similarity=0.803 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCcce
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRI--SKQRLKG 159 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~--~~~~~~G 159 (737)
.|+++||++.|+... ....+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|
T Consensus 3 ~l~~~~ls~~~~~~~--------------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G 66 (194)
T cd03213 3 TLSFRNLTVTVKSSP--------------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSG 66 (194)
T ss_pred EEEEEeeEEEEecCC--------------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--Cce
Confidence 589999999996310 001256999999999999999999999999999999999998 64 489
Q ss_pred EEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
+|.++|+++.....++.++|++|++.+++.+|++||+.+.....
T Consensus 67 ~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~------------------------------------ 110 (194)
T cd03213 67 EVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR------------------------------------ 110 (194)
T ss_pred EEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc------------------------------------
Confidence 99999999865445667899999999999999999998643110
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.||++++|++|+
T Consensus 111 -~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 -GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 4999999999999999999999999999999999999999999999987799999999998655788999999999999
Q ss_pred EEeeC
Q 036088 320 AVCSE 324 (737)
Q Consensus 320 iv~~G 324 (737)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98764
No 223
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.5e-40 Score=344.23 Aligned_cols=223 Identities=23% Similarity=0.274 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+ .+.+|+||||++++||+++|+||||||||||+++|+|+....+.+|+|
T Consensus 7 ~l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i 66 (252)
T CHL00131 7 ILEIKNLHASVN--------------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDI 66 (252)
T ss_pred eEEEEeEEEEeC--------------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceE
Confidence 799999999995 245999999999999999999999999999999999983112458999
Q ss_pred EECCEeCCcc---cccc-eEEEEecCCCCCCCCCHHHHHHHhhhhcCC----CCCcHHHHHHHHHHHHHHcCCc-ccccc
Q 036088 162 TLNGEVLGSK---LLKI-ISAYVMQDDLLYSMLTIEETLMFSAEFRLP----RSLSKEKKRKRVDALIDQLGLR-SAAMT 232 (737)
Q Consensus 162 ~~~G~~~~~~---~~~~-~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 232 (737)
.++|.++... ..++ .++|++|++.+++.+|+.+++.+....... ......+..++++++++.+|+. ...++
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 146 (252)
T CHL00131 67 LFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSR 146 (252)
T ss_pred EECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcc
Confidence 9999987542 1222 368999999999999999999875432110 0111223346788999999996 34444
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhh-cce
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSL-LDR 311 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~ 311 (737)
.++ .+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +... +|+
T Consensus 147 ~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~ 221 (252)
T CHL00131 147 NVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDY 221 (252)
T ss_pred ccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCE
Confidence 332 2599999999999999999999999999999999999999999999998779999999999763 5555 899
Q ss_pred EEEecCCEEEeeCChhhH
Q 036088 312 LIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~ 329 (737)
+++|++|++++.|+++.+
T Consensus 222 i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 222 VHVMQNGKIIKTGDAELA 239 (252)
T ss_pred EEEEeCCEEEEecChhhh
Confidence 999999999999988743
No 224
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-41 Score=347.41 Aligned_cols=215 Identities=27% Similarity=0.403 Sum_probs=175.5
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+.. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.
T Consensus 1 i~~~~l~~~~~~~------------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~ 60 (234)
T cd03251 1 VEFKNVTFRYPGD------------------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRIL 60 (234)
T ss_pred CEEEEEEEEeCCC------------------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEE
Confidence 4689999998521 23699999999999999999999999999999999999875 489999
Q ss_pred ECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHH-----HHHHHHHHHHHc--CCcccccc
Q 036088 163 LNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEK-----KRKRVDALIDQL--GLRSAAMT 232 (737)
Q Consensus 163 ~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~ 232 (737)
++|+++.. ...++.++|++|++.+++ .||+||+.+.... ..... ....++++++.+ ++.+..+
T Consensus 61 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~- 133 (234)
T cd03251 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG- 133 (234)
T ss_pred ECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-
Confidence 99998753 234566899999998887 5999999876431 11111 111345566665 4544333
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++.. +. .||++
T Consensus 134 ----~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v 206 (234)
T cd03251 134 ----ERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRI 206 (234)
T ss_pred ----cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEE
Confidence 33567999999999999999999999999999999999999999999999974 8999999999864 54 59999
Q ss_pred EEecCCEEEeeCChhhHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~ 331 (737)
++|++|+++..|+++++.+
T Consensus 207 ~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 207 VVLEDGKIVERGTHEELLA 225 (234)
T ss_pred EEecCCeEeeeCCHHHHHH
Confidence 9999999999998877644
No 225
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-40 Score=346.41 Aligned_cols=223 Identities=21% Similarity=0.314 Sum_probs=187.3
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---C
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---R 156 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~ 156 (737)
|..+.++++++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|++++. +
T Consensus 6 ~~~~~~~~~~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~ 65 (261)
T PRK14263 6 PIVMDCKLDKIFYG--------------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFR 65 (261)
T ss_pred CceEEEEeEEEEeC--------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCC
Confidence 56789999999885 356999999999999999999999999999999999998641 2
Q ss_pred cceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 157 LKGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 157 ~~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
.+|+|.++|+++.. ...++.++|++|++.++. +|+.||+.++...+. . ..+..++++++++.++|.+..+
T Consensus 66 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~ 140 (261)
T PRK14263 66 FEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS-MSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVK 140 (261)
T ss_pred CceEEEECCEeccccccchHhhhhceEEEecCCcccc-ccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhh
Confidence 58999999998742 134566899999998884 899999998764321 1 2234567899999999865332
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
... +...+.||||||||++|||||+++|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++. ++.++||+
T Consensus 141 ~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~ 217 (261)
T PRK14263 141 DKL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADT 217 (261)
T ss_pred hhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCE
Confidence 222 245667999999999999999999999999999999999999999999999964 789999999986 47899999
Q ss_pred EEEec--------CCEEEeeCChhhHH
Q 036088 312 LIFLS--------NGQAVCSEAPSNLS 330 (737)
Q Consensus 312 v~lL~--------~G~iv~~G~~~~~~ 330 (737)
+++|+ +|++++.|+++++.
T Consensus 218 v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 218 TAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EEEEecccccccCCceEEEeCCHHHHH
Confidence 99995 89999999988764
No 226
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=350.71 Aligned_cols=220 Identities=23% Similarity=0.392 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+++|+. ++.+|+|+||++++||+++|+|||||||||||++|+|++++. +|+|
T Consensus 6 ~l~~~~l~~~~~~-------------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i 64 (272)
T PRK15056 6 GIVVNDVTVTWRN-------------------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA--SGKI 64 (272)
T ss_pred eEEEEeEEEEecC-------------------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEE
Confidence 6999999999952 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCC--CCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLY--SMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
.++|+++.....++.++|++|++.+. ...+++|++.++...... ........+++++++++.+||.+..++.++
T Consensus 65 ~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 141 (272)
T PRK15056 65 SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG--- 141 (272)
T ss_pred EECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc---
Confidence 99999875432334589999997652 234789998764211000 011122345578889999999877766554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+++++ +|
T Consensus 142 --~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G 217 (272)
T PRK15056 142 --ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KG 217 (272)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999877999999999986 578899999888 89
Q ss_pred EEEeeCChhhH
Q 036088 319 QAVCSEAPSNL 329 (737)
Q Consensus 319 ~iv~~G~~~~~ 329 (737)
++++.|+++++
T Consensus 218 ~i~~~g~~~~~ 228 (272)
T PRK15056 218 TVLASGPTETT 228 (272)
T ss_pred EEEeecCHHhc
Confidence 99999988765
No 227
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2e-40 Score=342.50 Aligned_cols=205 Identities=22% Similarity=0.332 Sum_probs=173.2
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CcceEEEECCEeCCcccc-cceEEEEecCCC--CCCCCC
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ--RLKGTVTLNGEVLGSKLL-KIISAYVMQDDL--LYSMLT 191 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~--~~~G~I~~~G~~~~~~~~-~~~~~yV~Q~~~--l~~~lT 191 (737)
+|+|+|+++++||+++|+||||||||||+|+|+|+.++. +.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999998751 148999999998864333 346899999974 567789
Q ss_pred HHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 036088 192 IEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS---AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEP 268 (737)
Q Consensus 192 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEP 268 (737)
+.||+.+...... ......+++++++++.+|+.+ ..++ .+..|||||||||+|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKK-----YPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999987653221 122344567899999999973 3433 3457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 269 ISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 269 TsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
|+|||+.+...+.+.|++++++ |+|||+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999874 899999999986 578899999999999999999887763
No 228
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=348.31 Aligned_cols=221 Identities=20% Similarity=0.318 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~ 158 (737)
+|+++||+++|+ .+++|+|+|++|++||+++|+||||||||||+++|+|+..+. +.+
T Consensus 10 ~l~i~~v~~~~~--------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~ 69 (264)
T PRK14243 10 VLRTENLNVYYG--------------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVE 69 (264)
T ss_pred EEEEeeeEEEEC--------------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCc
Confidence 799999999995 245999999999999999999999999999999999997531 258
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|+++.. ...++.++||+|++.+++. ||.||+.+....+ ... ....++++++++.+++.+..+..
T Consensus 70 G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~ 144 (264)
T PRK14243 70 GKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDK 144 (264)
T ss_pred eEEEECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHH
Confidence 999999998742 2345678999999988885 9999998875432 111 22345677788888874321111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||+++
T Consensus 145 ~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~ 221 (264)
T PRK14243 145 L-KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTA 221 (264)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEE
Confidence 1 234567999999999999999999999999999999999999999999999976 589999999986 5889999999
Q ss_pred Eec---------CCEEEeeCChhhHH
Q 036088 314 FLS---------NGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~---------~G~iv~~G~~~~~~ 330 (737)
+|+ +|++++.|+++++.
T Consensus 222 ~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 222 FFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EEecccccccccCceEEEeCCHHHHH
Confidence 998 79999999988874
No 229
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-40 Score=343.93 Aligned_cols=223 Identities=19% Similarity=0.318 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--C-CCcc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRIS--K-QRLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~-~~~~ 158 (737)
.|+++||++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.. + .+.+
T Consensus 3 ~l~~~~v~~~~~--------------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~ 62 (250)
T PRK14266 3 RIEVENLNTYFD--------------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHE 62 (250)
T ss_pred EEEEEeEEEEeC--------------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCc
Confidence 589999999985 2459999999999999999999999999999999999864 2 1258
Q ss_pred eEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 159 GTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 159 G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
|+|.++|+++.. ...++.++|++|++.+++. |+.||+.+..... ........++++.+.++.+|+.+.....
T Consensus 63 G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~ 139 (250)
T PRK14266 63 GHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDK 139 (250)
T ss_pred cEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHH
Confidence 999999998753 1345678999999998885 9999998864322 1112334467788999999985432222
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
. +..+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|||++||++. ++.+.+|+++
T Consensus 140 ~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~ 216 (250)
T PRK14266 140 L-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTS 216 (250)
T ss_pred H-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEE
Confidence 2 344567999999999999999999999999999999999999999999999965 889999999986 5889999999
Q ss_pred EecCCEEEeeCChhhHH
Q 036088 314 FLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~ 330 (737)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 217 FFLNGEIIESGLTDQIF 233 (250)
T ss_pred EEECCeEEEeCCHHHHH
Confidence 99999999999988763
No 230
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.2e-40 Score=345.66 Aligned_cols=219 Identities=25% Similarity=0.336 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+ .+.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|
T Consensus 3 ~l~~~~l~~~~~--------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i 60 (253)
T TIGR02323 3 LLQVSGLSKSYG--------------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTA 60 (253)
T ss_pred eEEEeeeEEEeC--------------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEE
Confidence 689999999995 245899999999999999999999999999999999998754 8999
Q ss_pred EECCEe-----CCccc-------ccceEEEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc
Q 036088 162 TLNGEV-----LGSKL-------LKIISAYVMQDDL--LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR 227 (737)
Q Consensus 162 ~~~G~~-----~~~~~-------~~~~~~yV~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 227 (737)
.++|++ +.... .++.++|++|++. +++.+|+.||+.+..... . ........++++++++.+|+.
T Consensus 61 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~ 138 (253)
T TIGR02323 61 TYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEID 138 (253)
T ss_pred EEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCC
Confidence 999986 43211 2345899999974 556679999997643211 1 011223456789999999996
Q ss_pred c-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHH
Q 036088 228 S-AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRI 305 (737)
Q Consensus 228 ~-~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 305 (737)
+ ..++. ++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+
T Consensus 139 ~~~~~~~-----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~ 212 (253)
T TIGR02323 139 PTRIDDL-----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VA 212 (253)
T ss_pred hhhhhcC-----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH
Confidence 3 45444 4569999999999999999999999999999999999999999999998764 899999999986 57
Q ss_pred HhhcceEEEecCCEEEeeCChhhHH
Q 036088 306 LSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 306 ~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
.+.+|++++|++|++++.|+++++.
T Consensus 213 ~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 213 RLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred HHhcCEEEEEECCEEEEECCHHHHh
Confidence 7899999999999999999887663
No 231
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.1e-40 Score=347.86 Aligned_cols=228 Identities=26% Similarity=0.364 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+.+.. +....++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|
T Consensus 3 ~l~~~nl~~~~~~~~~-----------~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i 69 (268)
T PRK10419 3 LLNVSGLSHHYAHGGL-----------SGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNV 69 (268)
T ss_pred eEEEeceEEEecCCcc-----------ccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEE
Confidence 5899999999963100 0001125699999999999999999999999999999999999874 48999
Q ss_pred EECCEeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-ccccc
Q 036088 162 TLNGEVLGSK------LLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAMT 232 (737)
Q Consensus 162 ~~~G~~~~~~------~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 232 (737)
.++|+++... ..++.++|++|++ .+++..|+.|++.+..... ......+..++++++++.+|+. ...++
T Consensus 70 ~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 70 SWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred EECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhC
Confidence 9999987531 2356789999997 4677789999997654211 1223445566899999999996 44544
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcce
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 311 (737)
. ++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||++. .+.++||+
T Consensus 148 ~-----~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~ 221 (268)
T PRK10419 148 R-----PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQR 221 (268)
T ss_pred C-----CccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCE
Confidence 4 4579999999999999999999999999999999999999999999999865 899999999986 57789999
Q ss_pred EEEecCCEEEeeCChhhHH
Q 036088 312 LIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~ 330 (737)
+++|++|++++.|+++++.
T Consensus 222 i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 222 VMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEEECCEEeeeCChhhcc
Confidence 9999999999999887753
No 232
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8e-41 Score=387.00 Aligned_cols=218 Identities=31% Similarity=0.426 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.++++|++|+|+.. .+++|+|+|+++++||.++|+||||||||||+++|+|+++|. +|+|
T Consensus 316 ~i~~~~v~~~y~~~------------------~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i 375 (544)
T TIGR01842 316 HLSVENVTIVPPGG------------------KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT--SGSV 375 (544)
T ss_pred eEEEEEEEEEcCCC------------------CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceE
Confidence 69999999999632 256999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHH-----HHHHHHHHHHHcCCccccccc
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEK-----KRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~ 233 (737)
.+||+++.. ..+++.++||+|++.+|+. |++||+.+... ..++++ +...++++++.+ ++..||.
T Consensus 376 ~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~ 447 (544)
T TIGR01842 376 RLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYDTV 447 (544)
T ss_pred EECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccccc
Confidence 999998754 3467789999999999987 99999986432 122222 223345566655 3345677
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
+|+ .+..||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++..+|+|+|+++|+++ ..+.||+|+
T Consensus 448 ~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~ 524 (544)
T TIGR01842 448 IGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKIL 524 (544)
T ss_pred cCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEE
Confidence 764 56789999999999999999999999999999999999999999999998766899999999985 467899999
Q ss_pred EecCCEEEeeCChhhHH
Q 036088 314 FLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~ 330 (737)
+|++|++++.|+++++.
T Consensus 525 ~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 525 VLQDGRIARFGERDEVL 541 (544)
T ss_pred EEECCEEEeeCCHHHHh
Confidence 99999999999988764
No 233
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.6e-41 Score=424.17 Aligned_cols=227 Identities=24% Similarity=0.379 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC------
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ------ 155 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~------ 155 (737)
.|+|+||+|+|+.+. ++++|+|+||+|++|+.+||+||||||||||+++|.|+++|.
T Consensus 1165 ~I~f~nVsF~Y~~~~-----------------~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~ 1227 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP-----------------NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIV 1227 (1466)
T ss_pred eEEEEEEEEECCCCC-----------------CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccc
Confidence 699999999997421 246999999999999999999999999999999999999862
Q ss_pred ----------------------------------------------CcceEEEECCEeCCc---ccccceEEEEecCCCC
Q 036088 156 ----------------------------------------------RLKGTVTLNGEVLGS---KLLKIISAYVMQDDLL 186 (737)
Q Consensus 156 ----------------------------------------------~~~G~I~~~G~~~~~---~~~~~~~~yV~Q~~~l 186 (737)
+.+|+|++||.++.. ..+|+.+|||+|++.|
T Consensus 1228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L 1307 (1466)
T PTZ00265 1228 FKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML 1307 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc
Confidence 248999999999864 4578889999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 036088 187 YSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLD 266 (737)
Q Consensus 187 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLD 266 (737)
|+. ||+|||.|+..-....++.++.+.+.+++.++. |++..||.|| +.+..||||||||++|||||+++|+|||||
T Consensus 1308 F~g-TIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~--LP~GydT~VG-e~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1308 FNM-SIYENIKFGKEDATREDVKRACKFAAIDEFIES--LPNKYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred ccc-cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHh--CccccCCccC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 986 999999997431111111122223344555554 4667899998 456679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HcCcEEEEEecCCcHHHHhhcceEEEecC----CEEE-eeCChhhHHH
Q 036088 267 EPISGLDSTSAFNVVKVLKQIA-KSGSIVIMSIHQPSHRILSLLDRLIFLSN----GQAV-CSEAPSNLSQ 331 (737)
Q Consensus 267 EPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~----G~iv-~~G~~~~~~~ 331 (737)
||||+||+.++..|.+.|.++. .+++|+|+++|+++ ..+.||+|++|++ |+++ +.|+++++.+
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9999999999999999999986 36899999999985 4788999999999 8955 8999998863
No 234
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.8e-40 Score=337.71 Aligned_cols=204 Identities=21% Similarity=0.321 Sum_probs=177.0
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
+.+|+++|++++|+ ++.+++++||++++||+++|+||||||||||+++|+|++++. +|
T Consensus 9 ~~~l~~~~l~~~~~--------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G 66 (214)
T PRK13543 9 PPLLAAHALAFSRN--------------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE--SG 66 (214)
T ss_pred cceEEEeeEEEecC--------------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--Ce
Confidence 34799999999985 245999999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
+|.++|+++.....++.++|++|++.+++.+|+.||+.+....+. . ..++.++++++.++|.+..++.+
T Consensus 67 ~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~----- 135 (214)
T PRK13543 67 QIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV----- 135 (214)
T ss_pred eEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----
Confidence 999999988643345568999999999999999999988654321 1 12346788999999987766655
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
..||||||||++|||+++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|+.
T Consensus 136 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 136 RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 469999999999999999999999999999999999999999999999888999999999986 58899999999863
No 235
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=8.7e-41 Score=390.19 Aligned_cols=215 Identities=27% Similarity=0.446 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++|++|+|+. .+.+|+|+|+++++||.++|+|+||||||||+|+|+|+++|. +|+|
T Consensus 334 ~I~~~~vsf~y~~-------------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~--~G~I 392 (588)
T PRK13657 334 AVEFDDVSFSYDN-------------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ--SGRI 392 (588)
T ss_pred eEEEEEEEEEeCC-------------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEE
Confidence 6999999999962 145999999999999999999999999999999999998854 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-------ccccc
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-------RSAAM 231 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 231 (737)
.+||+++.. ..+++.++||+|++.+|+. |++|||.++.. +.+++ ++.+.++.+++ ++..|
T Consensus 393 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-----~~~d~----~i~~al~~~~l~~~i~~lp~gld 462 (588)
T PRK13657 393 LIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRP-----DATDE----EMRAAAERAQAHDFIERKPDGYD 462 (588)
T ss_pred EECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHhCHHHHHHhCccccc
Confidence 999998864 3567889999999999987 99999988632 12222 23333343332 44567
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
|.+|+ .+..||||||||++|||+|+++|+|++||||||+||+.++..+++.|+++. +++|+|++||+++ ..+.+|+
T Consensus 463 t~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ 538 (588)
T PRK13657 463 TVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADR 538 (588)
T ss_pred chhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCE
Confidence 88875 466799999999999999999999999999999999999999999999885 4799999999985 4788999
Q ss_pred EEEecCCEEEeeCChhhHHH
Q 036088 312 LIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~~ 331 (737)
|++|++|+++..|+++++.+
T Consensus 539 ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 539 ILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred EEEEECCEEEEeCCHHHHHH
Confidence 99999999999999888753
No 236
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=377.98 Aligned_cols=216 Identities=21% Similarity=0.358 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ ++.+|+|+||++++||+++|+|||||||||||++|+|++++. +|+|
T Consensus 4 ~l~~~~l~~~~~--------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I 61 (501)
T PRK11288 4 YLSFDGIGKTFP--------------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSI 61 (501)
T ss_pred eEEEeeeEEEEC--------------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCEE
Confidence 799999999995 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 162 TLNGEVLGSK----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 162 ~~~G~~~~~~----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.++|+++... ..++.++||+|++.+++.+||.||+.++............+.+++++++++.+||.+..+..+
T Consensus 62 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (501)
T PRK11288 62 LIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL--- 138 (501)
T ss_pred EECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch---
Confidence 9999987531 235678999999999999999999998642111111233445678899999999986665544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++
T Consensus 139 --~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~ 215 (501)
T PRK11288 139 --KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD 215 (501)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999888999999999986 57889999999999
Q ss_pred CEEEeeCC
Q 036088 318 GQAVCSEA 325 (737)
Q Consensus 318 G~iv~~G~ 325 (737)
|+++..++
T Consensus 216 G~i~~~~~ 223 (501)
T PRK11288 216 GRYVATFD 223 (501)
T ss_pred CEEEeecC
Confidence 99987665
No 237
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=9.1e-41 Score=346.53 Aligned_cols=217 Identities=25% Similarity=0.396 Sum_probs=172.7
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|+.. +++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.
T Consensus 1 l~i~~l~~~~~~~-----------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~ 61 (238)
T cd03249 1 IEFKNVSFRYPSR-----------------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEIL 61 (238)
T ss_pred CeEEEEEEecCCC-----------------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEE
Confidence 4689999998531 124699999999999999999999999999999999999874 489999
Q ss_pred ECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHH-----HHHHHHHHc--CCcccccc
Q 036088 163 LNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRK-----RVDALIDQL--GLRSAAMT 232 (737)
Q Consensus 163 ~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~ 232 (737)
++|+++.. ...++.++|++|++.+++ .||+||+.+....+ ......+ .+.++++.+ ++....
T Consensus 62 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 133 (238)
T cd03249 62 LDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLV-- 133 (238)
T ss_pred ECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceee--
Confidence 99998743 223456899999998887 59999998753221 1111111 123333333 332222
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||++.. + +.||++
T Consensus 134 ---~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v 207 (238)
T cd03249 134 ---GERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLI 207 (238)
T ss_pred ---ccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEE
Confidence 23456799999999999999999999999999999999999999999999997 79999999999864 5 489999
Q ss_pred EEecCCEEEeeCChhhHHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQF 332 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~~ 332 (737)
++|++|++++.|+.+++.+.
T Consensus 208 ~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 208 AVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEECCEEEEeCCHHHHhhc
Confidence 99999999999988776543
No 238
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=363.66 Aligned_cols=224 Identities=25% Similarity=0.385 Sum_probs=194.8
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
...++|+||+|.|+. +|++|+||||++.||+.+||+||||+||||++++|.++.+.. +|
T Consensus 535 ~G~i~fsnvtF~Y~p-------------------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~--sG 593 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDP-------------------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN--SG 593 (790)
T ss_pred CCeEEEEEeEEecCC-------------------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc--Cc
Confidence 347999999999974 478999999999999999999999999999999999998744 89
Q ss_pred EEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 160 TVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 160 ~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
.|.+||++++. ...|+.+|.||||..||.+ |+..||+|+..-...+++..+.+.+.+++-+ ++..+..+|.||+
T Consensus 594 sI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdrI--l~fPegY~t~VGE 670 (790)
T KOG0056|consen 594 SITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRI--LQFPEGYNTRVGE 670 (790)
T ss_pred eEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHHH--hcCchhhhhhhhh
Confidence 99999999864 5688899999999999997 9999999986544333333334444455443 5678889999996
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
++.+ |||||||||+|||+++++|.|++|||.||+||..+++.|...|.+++. ++|.|++.|+.+. .-.+|.|++++
T Consensus 671 RGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~ 746 (790)
T KOG0056|consen 671 RGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVIS 746 (790)
T ss_pred cccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEe
Confidence 5554 999999999999999999999999999999999999999999999986 7999999999875 56899999999
Q ss_pred CCEEEeeCChhhHHH
Q 036088 317 NGQAVCSEAPSNLSQ 331 (737)
Q Consensus 317 ~G~iv~~G~~~~~~~ 331 (737)
+|+|++.|.++|+..
T Consensus 747 ~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 747 NGRIVERGRHEELLK 761 (790)
T ss_pred CCeEeecCcHHHHHh
Confidence 999999999999864
No 239
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=6.7e-40 Score=342.03 Aligned_cols=224 Identities=25% Similarity=0.249 Sum_probs=179.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+ .+.+|+|+|++|++|++++|+||||||||||+++|+|+.+..+.+|+|
T Consensus 1 ~i~~~nl~~~~~--------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i 60 (248)
T PRK09580 1 MLSIKDLHVSVE--------------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60 (248)
T ss_pred CeEEEEEEEEeC--------------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEE
Confidence 478999999996 245999999999999999999999999999999999995312458999
Q ss_pred EECCEeCCcc---c-ccceEEEEecCCCCCCCCCHHHHHHHhhh-hcC--C-CCCcHHHHHHHHHHHHHHcCCcc-cccc
Q 036088 162 TLNGEVLGSK---L-LKIISAYVMQDDLLYSMLTIEETLMFSAE-FRL--P-RSLSKEKKRKRVDALIDQLGLRS-AAMT 232 (737)
Q Consensus 162 ~~~G~~~~~~---~-~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~lgL~~-~~~~ 232 (737)
.++|+++... . .++.++|++|++.+++.+|+.+++.+... .+. . .........+++++.++.+++.+ ..++
T Consensus 61 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 140 (248)
T PRK09580 61 EFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTR 140 (248)
T ss_pred EECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhccc
Confidence 9999887432 1 23458999999998888888777654321 110 0 01122233567888999999953 3333
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhh-cce
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSL-LDR 311 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~ 311 (737)
.+. +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++.. +... +|+
T Consensus 141 ~~~----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~ 215 (248)
T PRK09580 141 SVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDY 215 (248)
T ss_pred CCC----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCE
Confidence 321 3699999999999999999999999999999999999999999999998778999999999763 5555 899
Q ss_pred EEEecCCEEEeeCChhhHH
Q 036088 312 LIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~ 330 (737)
+++|++|++++.|+++.+.
T Consensus 216 i~~l~~g~i~~~g~~~~~~ 234 (248)
T PRK09580 216 VHVLYQGRIVKSGDFTLVK 234 (248)
T ss_pred EEEEECCeEEEeCCHHHHH
Confidence 9999999999999887553
No 240
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-40 Score=343.12 Aligned_cols=214 Identities=27% Similarity=0.429 Sum_probs=173.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++|++++|+. .+.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|
T Consensus 2 ~l~~~~l~~~~~~-------------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i 60 (229)
T cd03254 2 EIEFENVNFSYDE-------------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ--KGQI 60 (229)
T ss_pred eEEEEEEEEecCC-------------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEE
Confidence 4789999999852 235999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc------
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT------ 232 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~------ 232 (737)
.++|.++.. ...++.++|++|++.+++. ||+||+.+.... ... ..+++.++.+++.+..+.
T Consensus 61 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~ 130 (229)
T cd03254 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYD 130 (229)
T ss_pred EECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCccccc
Confidence 999998753 2345678999999988886 999999875321 111 223333444444322211
Q ss_pred -cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 233 -IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 233 -~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
.. +..+..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++.. + +.||+
T Consensus 131 ~~~-~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~ 206 (229)
T cd03254 131 TVL-GENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADK 206 (229)
T ss_pred CHh-hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCE
Confidence 11 23356799999999999999999999999999999999999999999999996 48999999999864 4 56999
Q ss_pred EEEecCCEEEeeCChhhHH
Q 036088 312 LIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~ 330 (737)
+++|++|++++.|+.+++.
T Consensus 207 i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 207 ILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred EEEEeCCeEEEeCCHHHHH
Confidence 9999999999988877654
No 241
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3e-40 Score=340.01 Aligned_cols=211 Identities=25% Similarity=0.373 Sum_probs=175.5
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||++.|+ .+++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+
T Consensus 6 ~~i~~~~l~~~~~--------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~ 63 (225)
T PRK10247 6 PLLQLQNVGYLAG--------------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT--SGT 63 (225)
T ss_pred ceEEEeccEEeeC--------------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCe
Confidence 4799999999985 246999999999999999999999999999999999998644 899
Q ss_pred EEECCEeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-ccccccccC
Q 036088 161 VTLNGEVLGSK---LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAMTIIGD 236 (737)
Q Consensus 161 I~~~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~ 236 (737)
|.++|.++... ..++.++|++|++.+++. ||+||+.+....+. .. ..+++++++++.+|+. ...++.
T Consensus 64 i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~--- 134 (225)
T PRK10247 64 LLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKN--- 134 (225)
T ss_pred EEECCEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCC---
Confidence 99999987532 245678999999988875 99999988643321 11 1235678999999995 344444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEe
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
++.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|++++++ |.|||++||++.. + +.||++++|
T Consensus 135 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l 210 (225)
T PRK10247 135 --IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITL 210 (225)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEE
Confidence 4579999999999999999999999999999999999999999999999764 8999999999864 5 579999999
Q ss_pred c-CCEEEeeCCh
Q 036088 316 S-NGQAVCSEAP 326 (737)
Q Consensus 316 ~-~G~iv~~G~~ 326 (737)
+ ++..+..|..
T Consensus 211 ~~~~~~~~~~~~ 222 (225)
T PRK10247 211 QPHAGEMQEARY 222 (225)
T ss_pred ecccchHhhhhh
Confidence 5 4555556654
No 242
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.4e-40 Score=339.29 Aligned_cols=210 Identities=30% Similarity=0.474 Sum_probs=174.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++|+++.|+.. .+.+|+|+||++++|++++|+||||||||||+++|+|+.++. +|+|
T Consensus 2 ~l~~~~l~~~~~~~------------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i 61 (220)
T cd03245 2 RIEFRNVSFSYPNQ------------------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT--SGSV 61 (220)
T ss_pred eEEEEEEEEEcCCC------------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCeE
Confidence 37899999998521 246999999999999999999999999999999999998644 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc---
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG--- 235 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg--- 235 (737)
.++|+++.. ...++.++|++|++.+++ .||.||+.+.... .. .+.+.++++.+++.+..+....
T Consensus 62 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~ 131 (220)
T cd03245 62 LLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLD 131 (220)
T ss_pred EECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhcccccc
Confidence 999998743 224557899999998887 5999999875321 11 2346678888888766554321
Q ss_pred ---CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 236 ---DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 236 ---~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
......||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++.. .++||++
T Consensus 132 ~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~--~~~~d~v 208 (220)
T cd03245 132 LQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL--LDLVDRI 208 (220)
T ss_pred ceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH--HHhCCEE
Confidence 1234579999999999999999999999999999999999999999999999764 899999999863 4799999
Q ss_pred EEecCCEEEeeC
Q 036088 313 IFLSNGQAVCSE 324 (737)
Q Consensus 313 ~lL~~G~iv~~G 324 (737)
++|++|++++.|
T Consensus 209 ~~l~~g~i~~~~ 220 (220)
T cd03245 209 IVMDSGRIVADG 220 (220)
T ss_pred EEEeCCeEeecC
Confidence 999999998754
No 243
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-40 Score=395.38 Aligned_cols=219 Identities=26% Similarity=0.421 Sum_probs=184.3
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+|+|+.. .+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|. +|+
T Consensus 454 ~~i~~~~vsf~y~~~------------------~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~--~G~ 513 (694)
T TIGR01846 454 GAITFENIRFRYAPD------------------SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQ 513 (694)
T ss_pred CeEEEEEEEEEcCCC------------------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--Cce
Confidence 469999999999632 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHH-----HHHHHHHHHHHcCCcccccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEK-----KRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~ 232 (737)
|++||+++.. ..+|+.++||+|++.+|+. |++|||.++.. ..+.++ +...+++.++.+ +...||
T Consensus 514 I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-----~~~~~~i~~a~~~~~l~~~i~~l--p~gl~t 585 (694)
T TIGR01846 514 VLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNP-----GAPFEHVIHAAKLAGAHDFISEL--PQGYNT 585 (694)
T ss_pred EEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCC-----CCCHHHHHHHHHHcChHHHHHhC--cCccCc
Confidence 9999999864 3567889999999999986 99999987532 122222 122334444443 345678
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.+|+ .+..||||||||++|||||+++|++|+||||||+||+.++..+++.|+++. +++|+|++||+++. .+.||+|
T Consensus 586 ~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i 661 (694)
T TIGR01846 586 EVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDRI 661 (694)
T ss_pred EecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCEE
Confidence 8875 467899999999999999999999999999999999999999999999985 58999999999863 5679999
Q ss_pred EEecCCEEEeeCChhhHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~ 331 (737)
++|++|++++.|+++++.+
T Consensus 662 i~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 662 IVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEEeCCEEEEeCCHHHHHH
Confidence 9999999999999988754
No 244
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=9.2e-41 Score=388.81 Aligned_cols=216 Identities=27% Similarity=0.396 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+|+|+.. ++++|+|+|+++++||.++|+|+||||||||+++|+|+++|. +|+|
T Consensus 330 ~i~~~~v~f~y~~~------------------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~--~G~I 389 (571)
T TIGR02203 330 DVEFRNVTFRYPGR------------------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD--SGQI 389 (571)
T ss_pred eEEEEEEEEEcCCC------------------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeE
Confidence 69999999999632 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-------ccccc
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-------RSAAM 231 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 231 (737)
++||.+++. ..+++.++||+|++.+|++ |++|||.++.. .+.++ +++++.++.+|+ ++..|
T Consensus 390 ~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~gld 460 (571)
T TIGR02203 390 LLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT----EQADR----AEIERALAAAYAQDFVDKLPLGLD 460 (571)
T ss_pred EECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC----CCCCH----HHHHHHHHHcChHHHHHhCcCccc
Confidence 999998754 3567789999999999987 99999987631 11222 335555555554 34567
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
|.+|+. ++.||||||||++|||+++++|+|++||||||+||+.++..+++.|+++. +++|+|++||+++ ..+.||+
T Consensus 461 t~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ 536 (571)
T TIGR02203 461 TPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADR 536 (571)
T ss_pred ceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCE
Confidence 888854 56799999999999999999999999999999999999999999999985 4799999999985 5789999
Q ss_pred EEEecCCEEEeeCChhhHH
Q 036088 312 LIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~ 330 (737)
|++|++|+++..|+++++.
T Consensus 537 ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 537 IVVMDDGRIVERGTHNELL 555 (571)
T ss_pred EEEEeCCEEEeeCCHHHHH
Confidence 9999999999999998874
No 245
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.6e-40 Score=414.18 Aligned_cols=225 Identities=26% Similarity=0.384 Sum_probs=200.6
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||++.|+.+ .+.+|+|||+.|++||+++|+||||||||||+|+|+|+.+++ +|+
T Consensus 1936 ~~L~v~nLsK~Y~~~------------------~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt--sG~ 1995 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT------------------SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT--SGD 1995 (2272)
T ss_pred ceEEEEEEEEEECCC------------------CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC--ccE
Confidence 379999999999621 256999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 161 VTLNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 161 I~~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
|.++|+++.. ...++.+||+||++.+++.+||+|+|.+.++++ +.++++.+++++++++.+||.+.+|+.++
T Consensus 1996 I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~--- 2069 (2272)
T TIGR01257 1996 ATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG--- 2069 (2272)
T ss_pred EEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh---
Confidence 9999999853 234567899999999999999999999877654 23445556788999999999988877665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
.|||||||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||+++ ++.++|||+++|++|
T Consensus 2070 --~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G 2146 (2272)
T TIGR01257 2070 --TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKG 2146 (2272)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999888999999999986 688999999999999
Q ss_pred EEEeeCChhhHHHHHh
Q 036088 319 QAVCSEAPSNLSQFFG 334 (737)
Q Consensus 319 ~iv~~G~~~~~~~~f~ 334 (737)
++++.|+++++...|.
T Consensus 2147 ~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2147 AFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred EEEEECCHHHHHHHhC
Confidence 9999999999988775
No 246
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=349.91 Aligned_cols=227 Identities=22% Similarity=0.357 Sum_probs=185.7
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC---CC
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK---QR 156 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~---~~ 156 (737)
+.+|+++||++.|+ .+.+|+++||+|++||+++|+|||||||||||++|+|++++ .+
T Consensus 43 ~~~l~i~nl~~~~~--------------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p 102 (305)
T PRK14264 43 DAKLSVEDLDVYYG--------------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAAR 102 (305)
T ss_pred CceEEEEEEEEEeC--------------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCC
Confidence 44799999999995 24599999999999999999999999999999999999753 14
Q ss_pred cceEEEECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCC---------CCc-HHHHHHHHHHHH
Q 036088 157 LKGTVTLNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPR---------SLS-KEKKRKRVDALI 221 (737)
Q Consensus 157 ~~G~I~~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~---------~~~-~~~~~~~v~~~l 221 (737)
.+|+|.++|+++.. ...++.++||+|++.+++. ||+||+.++....... ... ....++++++++
T Consensus 103 ~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 181 (305)
T PRK14264 103 IDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSL 181 (305)
T ss_pred CceEEEECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHH
Confidence 58999999998753 1245678999999988885 9999999875421100 011 123356788999
Q ss_pred HHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCC
Q 036088 222 DQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQP 301 (737)
Q Consensus 222 ~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 301 (737)
+.+++.+...... +..++.||||||||++||++|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++
T Consensus 182 ~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~ 259 (305)
T PRK14264 182 RQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM 259 (305)
T ss_pred HHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH
Confidence 9998854332222 345668999999999999999999999999999999999999999999999987 58999999998
Q ss_pred cHHHHhhcceE-EEecCCEEEeeCChhhHH
Q 036088 302 SHRILSLLDRL-IFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 302 ~~~i~~~~D~v-~lL~~G~iv~~G~~~~~~ 330 (737)
. .+.++||++ ++|++|++++.|+++++.
T Consensus 260 ~-~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 260 Q-QAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred H-HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 6 478899997 578999999999987653
No 247
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.1e-40 Score=333.25 Aligned_cols=200 Identities=26% Similarity=0.336 Sum_probs=171.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 1 ~l~~~~l~~~~~--------------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~v 58 (204)
T PRK13538 1 MLEARNLACERD--------------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD--AGEV 58 (204)
T ss_pred CeEEEEEEEEEC--------------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEE
Confidence 478999999985 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 162 TLNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 162 ~~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
.++|+++.. ...++.++|++|++.+++.+||.||+.+...... . ..+++++++++.+||.+..++.+
T Consensus 59 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~----- 127 (204)
T PRK13538 59 LWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV----- 127 (204)
T ss_pred EECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----
Confidence 999998753 2345668999999999999999999998754321 1 23467889999999987666554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
+.||||||||++||++|+++|++++|||||+|||+.+...+.+.|++++++|.|||++||++.. +.+..+|++++
T Consensus 128 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 128 RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 4699999999999999999999999999999999999999999999998778999999999864 55666677766
No 248
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=377.18 Aligned_cols=207 Identities=18% Similarity=0.301 Sum_probs=177.8
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc----cccceEEEEecCCCCCCCC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK----LLKIISAYVMQDDLLYSML 190 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~----~~~~~~~yV~Q~~~l~~~l 190 (737)
+++|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.++|+++... ..++.++||+|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 46999999999999999999999999999999999998754 89999999987532 2345689999999899999
Q ss_pred CHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 036088 191 TIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPIS 270 (737)
Q Consensus 191 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTs 270 (737)
||+||+.++............+..++++++++.+|+.+..++.+ ..|||||||||+|||+|+.+|++|||||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987642110101123344567899999999987666554 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhH
Q 036088 271 GLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 271 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
|||+.+...+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999888999999999986 57889999999999999999987664
No 249
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.7e-40 Score=365.41 Aligned_cols=229 Identities=28% Similarity=0.387 Sum_probs=198.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC--Ccce
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ--RLKG 159 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~--~~~G 159 (737)
.|+++||+..|.... +...+++||||++.+||++||+|.|||||||+.++|.|++++. ..+|
T Consensus 5 lL~V~nL~v~~~~~~----------------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G 68 (539)
T COG1123 5 LLEVENLTVEFATDG----------------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSG 68 (539)
T ss_pred eEEEeceEEEEecCC----------------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccce
Confidence 799999999997431 2357999999999999999999999999999999999999854 2589
Q ss_pred EEEECCEeCCcc---c----ccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccc
Q 036088 160 TVTLNGEVLGSK---L----LKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAA 230 (737)
Q Consensus 160 ~I~~~G~~~~~~---~----~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 230 (737)
+|.++|+++... . ..+.++||||++ .+-|-+||.+-|.-....+.. .+.++.++++.++|+.+||++..
T Consensus 69 ~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~ 146 (539)
T COG1123 69 EVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPE 146 (539)
T ss_pred EEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChh
Confidence 999999976431 1 235689999996 567778999998876665532 33778889999999999998765
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~ 309 (737)
.. +..++.|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|+||||+. -+.++|
T Consensus 147 ~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~a 222 (539)
T COG1123 147 RR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELA 222 (539)
T ss_pred hh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhc
Confidence 44 567889999999999999999999999999999999999999999999999985 5999999999986 589999
Q ss_pred ceEEEecCCEEEeeCChhhHHHH
Q 036088 310 DRLIFLSNGQAVCSEAPSNLSQF 332 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~~~~~~ 332 (737)
|||+||.+|++++.|+++++.+.
T Consensus 223 Drv~Vm~~G~iVE~G~~~~i~~~ 245 (539)
T COG1123 223 DRVVVMYKGEIVETGPTEEILSN 245 (539)
T ss_pred CeEEEEECCEEEEecCHHHHHhc
Confidence 99999999999999999998654
No 250
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-40 Score=343.27 Aligned_cols=222 Identities=21% Similarity=0.363 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++|+ .+.+|+|+||++.+||+++|+||||||||||+++|+|+.++. +|+|
T Consensus 10 ~i~~~~~~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~--~G~v 67 (257)
T PRK14246 10 VFNISRLYLYIN--------------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY--DSKI 67 (257)
T ss_pred heeeeeEEEecC--------------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--cCce
Confidence 699999999996 356999999999999999999999999999999999998754 6555
Q ss_pred EECC------EeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc
Q 036088 162 TLNG------EVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 162 ~~~G------~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 232 (737)
.++| +++.. ...++.++|++|++.+++++||+||+.+...... ...+.+..++++++++.+++.+....
T Consensus 68 ~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (257)
T PRK14246 68 KVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYD 145 (257)
T ss_pred eEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchh
Confidence 5554 54432 2345678999999999999999999998754321 12234455778999999999642111
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.. +..++.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++++ +.|||++||++. .+.+.||++
T Consensus 146 ~~-~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v 222 (257)
T PRK14246 146 RL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYV 222 (257)
T ss_pred hh-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEE
Confidence 11 234567999999999999999999999999999999999999999999999965 699999999976 477899999
Q ss_pred EEecCCEEEeeCChhhHH
Q 036088 313 IFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~ 330 (737)
++|++|+++..|+++++.
T Consensus 223 ~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 223 AFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999887764
No 251
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=343.06 Aligned_cols=223 Identities=18% Similarity=0.316 Sum_probs=184.1
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR--- 156 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~--- 156 (737)
...|+++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.++.+
T Consensus 14 ~~~l~~~~l~~~~~--------------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~ 73 (265)
T PRK14252 14 QQKSEVNKLNFYYG--------------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNH 73 (265)
T ss_pred CceEEEEEEEEEEC--------------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCC
Confidence 44799999999996 2469999999999999999999999999999999999986422
Q ss_pred cceEEEECCEeCCc-------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCc-HHHHHHHHHHHHHHcCCcc
Q 036088 157 LKGTVTLNGEVLGS-------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLS-KEKKRKRVDALIDQLGLRS 228 (737)
Q Consensus 157 ~~G~I~~~G~~~~~-------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~ 228 (737)
.+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.++.... ... ....++++++.++.+++.+
T Consensus 74 ~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~ 149 (265)
T PRK14252 74 YEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWD 149 (265)
T ss_pred cccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCch
Confidence 58999999987631 1345678999999999986 9999998865322 112 2223467888888888743
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhh
Q 036088 229 AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSL 308 (737)
Q Consensus 229 ~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 308 (737)
...... +.....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++
T Consensus 150 ~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~ 226 (265)
T PRK14252 150 EVKDRL-GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARV 226 (265)
T ss_pred hhhHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHh
Confidence 211111 234557999999999999999999999999999999999999999999999976 689999999986 57889
Q ss_pred cceEEEecCCEEEeeCChhhH
Q 036088 309 LDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 309 ~D~v~lL~~G~iv~~G~~~~~ 329 (737)
||++++|++|+++..|+.+++
T Consensus 227 ~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 227 SDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred CCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999988775
No 252
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.8e-40 Score=366.02 Aligned_cols=233 Identities=28% Similarity=0.397 Sum_probs=196.5
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
...++++||++.|..+...+ .+..+...+++||||++++||++||+|+||||||||.|+|+|+.+| .+|
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~---------~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G 346 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLF---------VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSG 346 (539)
T ss_pred CceeEeeeeeeeeccccccc---------cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCc
Confidence 45799999999998543211 0112346799999999999999999999999999999999999886 489
Q ss_pred EEEECCEeCC--c---ccccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc
Q 036088 160 TVTLNGEVLG--S---KLLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 160 ~I~~~G~~~~--~---~~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 232 (737)
+|.++|++.. . ...++.+-+||||+ .|.|.+||+++|.-....... ...+++++++.++++.+||...
T Consensus 347 ~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~--- 421 (539)
T COG1123 347 SIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE--- 421 (539)
T ss_pred eEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH---
Confidence 9999998732 1 12455677899986 689999999999887654432 2356677899999999999852
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcce
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 311 (737)
+.+.++.+||||||||++|||||+.+|++|++|||||.||+..+.+|+++|+++.++ |.|.|++|||.. .+..+|||
T Consensus 422 -~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~dr 499 (539)
T COG1123 422 -FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADR 499 (539)
T ss_pred -HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCce
Confidence 225667789999999999999999999999999999999999999999999999876 999999999986 58899999
Q ss_pred EEEecCCEEEeeCChhhHH
Q 036088 312 LIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~ 330 (737)
|++|.+|++|+.|+.+++.
T Consensus 500 v~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 500 VAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred EEEEECCeEEEeCCHHHHh
Confidence 9999999999999887763
No 253
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=381.96 Aligned_cols=231 Identities=23% Similarity=0.319 Sum_probs=191.1
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||++.|+...+.+ ....+.+.+|+||||+|++||+++|+||||||||||+++|+|++++. +|+
T Consensus 312 ~~L~~~~l~~~y~~~~~~~---------~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~--~G~ 380 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLL---------NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ--GGE 380 (623)
T ss_pred ceEEEeeeEEEEcCCCccc---------cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CcE
Confidence 4799999999996321000 00011246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccc
Q 036088 161 VTLNGEVLGSK------LLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAM 231 (737)
Q Consensus 161 I~~~G~~~~~~------~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 231 (737)
|.++|+++... ..++.++||+|++ .+++.+||.||+.+...... .....+.+++++++|+.+||. +..+
T Consensus 381 I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~ 458 (623)
T PRK10261 381 IIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAW 458 (623)
T ss_pred EEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhh
Confidence 99999987531 2355789999997 58899999999988654321 112344567899999999996 4455
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcc
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 310 (737)
+. ++.|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||+. .+.++||
T Consensus 459 ~~-----~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~d 532 (623)
T PRK10261 459 RY-----PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISH 532 (623)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCC
Confidence 44 4579999999999999999999999999999999999999999999999875 899999999986 5888999
Q ss_pred eEEEecCCEEEeeCChhhHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~ 330 (737)
+|++|++|++++.|+++++.
T Consensus 533 ri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 533 RVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EEEEEECCEEEEecCHHHHh
Confidence 99999999999999988873
No 254
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.1e-40 Score=346.82 Aligned_cols=215 Identities=21% Similarity=0.321 Sum_probs=180.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++|++++|+.+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++ . +|+|
T Consensus 2 ~i~~~nls~~~~~~------------------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~--~G~I 60 (275)
T cd03289 2 QMTVKDLTAKYTEG------------------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T--EGDI 60 (275)
T ss_pred eEEEEEEEEEeCCC------------------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C--CcEE
Confidence 48899999999632 2459999999999999999999999999999999999985 3 7999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC--
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD-- 236 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-- 236 (737)
.++|.++.. ...++.++||||++.+|+. ||+||+..... .. .+++.+.++.+||.+..+..++.
T Consensus 61 ~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~----~~~~~~~l~~~gL~~~~~~~p~~l~ 129 (275)
T cd03289 61 QIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WS----DEEIWKVAEEVGLKSVIEQFPGQLD 129 (275)
T ss_pred EECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC------CC----HHHHHHHHHHcCCHHHHHhCccccc
Confidence 999998753 2456778999999999986 99999964211 11 23567778888887554443321
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 237 ----EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 237 ----~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
+....||||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|++. .+ ..||||
T Consensus 130 ~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri 206 (275)
T cd03289 130 FVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRF 206 (275)
T ss_pred ceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEE
Confidence 2455699999999999999999999999999999999999999999999875 4899999999985 34 459999
Q ss_pred EEecCCEEEeeCChhhHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~ 331 (737)
++|++|++++.|+++++..
T Consensus 207 ~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 207 LVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEecCCeEeecCCHHHHhh
Confidence 9999999999999998854
No 255
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.5e-40 Score=359.71 Aligned_cols=229 Identities=29% Similarity=0.386 Sum_probs=195.6
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
...|.++++++.-+ + .++++|+|+||++.+||.+||+||||||||||.|+|.|..+|. +|
T Consensus 332 ~g~L~Ve~l~~~PP-g-----------------~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~--~G 391 (580)
T COG4618 332 QGALSVERLTAAPP-G-----------------QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT--SG 391 (580)
T ss_pred CceeeEeeeeecCC-C-----------------CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC--CC
Confidence 34799999998332 2 2578999999999999999999999999999999999998854 89
Q ss_pred EEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 160 TVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 160 ~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
.|.+||.+++. +.+-+++||.||+-.||+. ||.|||.=..+...++.+-++.+.+.++|++-. +.+.+||.||+
T Consensus 392 ~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~--lP~GYdT~iG~ 468 (580)
T COG4618 392 SVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILR--LPQGYDTRIGE 468 (580)
T ss_pred cEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHh--CcCCccCccCC
Confidence 99999998764 4567889999999999998 999999522111111122233455678888765 47789999995
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.+.+||||||||+++||||..+|.+++||||-|+||...+..+.+.|.+++++|.|+|+++|+|+ +...+|+|++|+
T Consensus 469 -~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~ 545 (580)
T COG4618 469 -GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQ 545 (580)
T ss_pred -CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeec
Confidence 56689999999999999999999999999999999999999999999999999999999999996 689999999999
Q ss_pred CCEEEeeCChhhHHHHHh
Q 036088 317 NGQAVCSEAPSNLSQFFG 334 (737)
Q Consensus 317 ~G~iv~~G~~~~~~~~f~ 334 (737)
+|++..+|+.+|+.....
T Consensus 546 ~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 546 DGRIAAFGPREEVLAKVL 563 (580)
T ss_pred CChHHhcCCHHHHHHHhc
Confidence 999999999999987653
No 256
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-40 Score=323.77 Aligned_cols=171 Identities=35% Similarity=0.562 Sum_probs=154.7
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~ 58 (173)
T cd03230 1 IEVRNLSKRYG--------------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD--SGEIK 58 (173)
T ss_pred CEEEEEEEEEC--------------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEE
Confidence 46899999885 235999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 163 LNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 163 ~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
++|+++.. ...++.++|++|++.+++.+||.||+.
T Consensus 59 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~------------------------------------------- 95 (173)
T cd03230 59 VLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------------------------------------------- 95 (173)
T ss_pred ECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-------------------------------------------
Confidence 99998753 234567899999999999899999973
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. ++.+.+|++++|++|++
T Consensus 96 -LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 96 -LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred -cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999877899999999986 57789999999999874
No 257
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.2e-39 Score=375.95 Aligned_cols=225 Identities=27% Similarity=0.428 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~ 158 (737)
+|+++|++++|+.+. +.+.+|+|+||++++||++||+|||||||||||++|+|++++. +.+
T Consensus 5 ~l~~~~l~~~~~~~~----------------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~ 68 (529)
T PRK15134 5 LLAIENLSVAFRQQQ----------------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPS 68 (529)
T ss_pred eEEEeceEEEecCCC----------------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccc
Confidence 699999999996310 1256999999999999999999999999999999999998752 258
Q ss_pred eEEEECCEeCCccc------cc-ceEEEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc
Q 036088 159 GTVTLNGEVLGSKL------LK-IISAYVMQDDL--LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA 229 (737)
Q Consensus 159 G~I~~~G~~~~~~~------~~-~~~~yV~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 229 (737)
|+|.++|+++.... .+ +.+|||+|++. +++.+||+|++.+..... ...+..+..++++++++.+||.+.
T Consensus 69 G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~ 146 (529)
T PRK15134 69 GDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQA 146 (529)
T ss_pred eEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCCh
Confidence 99999999875311 22 46899999974 677789999988654321 123445567889999999999752
Q ss_pred ---ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHH
Q 036088 230 ---AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRI 305 (737)
Q Consensus 230 ---~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 305 (737)
.++. +..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+
T Consensus 147 ~~~~~~~-----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~ 220 (529)
T PRK15134 147 AKRLTDY-----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IV 220 (529)
T ss_pred HHHHhhC-----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HH
Confidence 3444 4579999999999999999999999999999999999999999999999875 899999999986 47
Q ss_pred HhhcceEEEecCCEEEeeCChhhHH
Q 036088 306 LSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 306 ~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
.++||+|++|++|++++.|+++++.
T Consensus 221 ~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 221 RKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 8899999999999999999987763
No 258
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.1e-40 Score=331.08 Aligned_cols=196 Identities=24% Similarity=0.328 Sum_probs=170.9
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||++.|+ .+.+|+|+|++|++||+++|+|+||||||||+++|+|++++. +|+|.
T Consensus 1 l~i~~l~~~~~--------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~ 58 (201)
T cd03231 1 LEADELTCERD--------------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL--AGRVL 58 (201)
T ss_pred CEEEEEEEEeC--------------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEE
Confidence 46899999985 246999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 163 LNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 163 ~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
++|+++.. ...++.++|++|++.+++.+||+||+.+.... ...++++++++.+|+.+..++.+ .
T Consensus 59 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~-----~ 124 (201)
T cd03231 59 LNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRPV-----A 124 (201)
T ss_pred ECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCch-----h
Confidence 99998743 23456789999999999899999999885321 02456889999999987665554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++|+|+|++||++. ++...+|+++++
T Consensus 125 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 69999999999999999999999999999999999999999999999878999999999986 478899999887
No 259
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.2e-39 Score=375.28 Aligned_cols=221 Identities=28% Similarity=0.414 Sum_probs=184.8
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.+..+.+|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~ 60 (520)
T TIGR03269 1 IEVKNLTKKFD--------------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60 (520)
T ss_pred CEEEEEEEEEC--------------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEE
Confidence 47899999995 2469999999999999999999999999999999999962123489999
Q ss_pred EC-----------------------CEeCC-------c------ccccceEEEEecC-CCCCCCCCHHHHHHHhhhhcCC
Q 036088 163 LN-----------------------GEVLG-------S------KLLKIISAYVMQD-DLLYSMLTIEETLMFSAEFRLP 205 (737)
Q Consensus 163 ~~-----------------------G~~~~-------~------~~~~~~~~yV~Q~-~~l~~~lTV~e~l~~~~~~~~~ 205 (737)
++ |.++. . ...++.++||+|+ +.+++.+||+||+.+.....
T Consensus 61 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-- 138 (520)
T TIGR03269 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-- 138 (520)
T ss_pred EeccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc--
Confidence 97 32221 0 1134568999997 67888899999999875432
Q ss_pred CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 036088 206 RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLK 285 (737)
Q Consensus 206 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~ 285 (737)
..+..+.+++++++++.+||++..+..+ +.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+
T Consensus 139 -~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 212 (520)
T TIGR03269 139 -GYEGKEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALE 212 (520)
T ss_pred -CCCHHHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHH
Confidence 2334455678999999999987665544 4699999999999999999999999999999999999999999999
Q ss_pred HHHH-cCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHHHH
Q 036088 286 QIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLSQF 332 (737)
Q Consensus 286 ~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 332 (737)
++++ .|+|||++||++. .+.++||++++|++|++++.|+++++.+.
T Consensus 213 ~l~~~~g~tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 213 EAVKASGISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 9976 4899999999986 47789999999999999999998877554
No 260
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=381.59 Aligned_cols=222 Identities=24% Similarity=0.342 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|.... +.+++|+||||++++||++||+||||||||||+++|+|++++. +|+|
T Consensus 12 ~l~v~~l~~~y~~~~----------------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~--~G~i 73 (623)
T PRK10261 12 VLAVENLNIAFMQEQ----------------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA--GGLV 73 (623)
T ss_pred eEEEeceEEEecCCC----------------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CeEE
Confidence 799999999996321 1246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc-------------c---ccc-ceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHH
Q 036088 162 TLNGEVLGS-------------K---LLK-IISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALID 222 (737)
Q Consensus 162 ~~~G~~~~~-------------~---~~~-~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~ 222 (737)
.++|..+.. . ..+ +.+|||+|++ .+++.+||.||+.++.+... ..+..+.+++++++++
T Consensus 74 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~ 151 (623)
T PRK10261 74 QCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLD 151 (623)
T ss_pred EECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Confidence 999975410 0 112 3589999997 68888999999999865421 2345556678999999
Q ss_pred HcCCcc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEe
Q 036088 223 QLGLRS---AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSI 298 (737)
Q Consensus 223 ~lgL~~---~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~ 298 (737)
.+||.+ ..+. .+..|||||||||+||+||+.+|+||||||||+|||+.++.+++++|++++++ |+|||++|
T Consensus 152 ~~gL~~~~~~~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~it 226 (623)
T PRK10261 152 QVRIPEAQTILSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFIT 226 (623)
T ss_pred HCCCCChhhHHhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 999963 2333 45579999999999999999999999999999999999999999999999865 89999999
Q ss_pred cCCcHHHHhhcceEEEecCCEEEeeCChhhH
Q 036088 299 HQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 299 H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
|++. .+.++||||++|++|++++.|+++++
T Consensus 227 Hdl~-~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 227 HDMG-VVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred CCHH-HHHHhCCEEEEeeCCeecccCCHHHh
Confidence 9986 57899999999999999999998776
No 261
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-39 Score=340.19 Aligned_cols=230 Identities=20% Similarity=0.273 Sum_probs=186.9
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
+.|+++||+++|.........+......+.+.+.+.+|+++||++++||+++|+||||||||||+++|+|++++. +|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~--~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT--VGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ceE
Confidence 468999999999753210000000011122335578999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
|.++|+ +++++|+..+.+.+||.||+.+..... ....++..+.++++++.+++.+..+..+ +
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----K 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----c
Confidence 999996 256778877788899999998765432 2234445566788899999987665544 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
.||||||||++||++|+.+|++|||||||+|||+.+...+++.|.+++++|+|||+++|++. .+.+.+|++++|++|++
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKL 221 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEE
Confidence 69999999999999999999999999999999999999999999999877999999999976 47889999999999999
Q ss_pred EeeCChhhHHH
Q 036088 321 VCSEAPSNLSQ 331 (737)
Q Consensus 321 v~~G~~~~~~~ 331 (737)
+..|+++++.+
T Consensus 222 ~~~g~~~~~~~ 232 (264)
T PRK13546 222 KDYGELDDVLP 232 (264)
T ss_pred EEeCCHHHHHH
Confidence 99999887654
No 262
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-40 Score=340.12 Aligned_cols=215 Identities=27% Similarity=0.416 Sum_probs=170.8
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+. .+.+|+|+|+++++|++++|+||||||||||+++|+|+.++ .+|+|.
T Consensus 1 l~~~~l~~~~~~-------------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~ 59 (236)
T cd03253 1 IEFENVTFAYDP-------------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV--SSGSIL 59 (236)
T ss_pred CEEEEEEEEeCC-------------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEE
Confidence 468999998852 24599999999999999999999999999999999999874 489999
Q ss_pred ECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHH-----HHHHHHHHHcCCcccccccc
Q 036088 163 LNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKR-----KRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 163 ~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~v 234 (737)
++|+++.. ...++.++|++|++.+++ .||+||+.+.... ....... ..+.+.++.+ ....++.+
T Consensus 60 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~ 131 (236)
T cd03253 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIV 131 (236)
T ss_pred ECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchh
Confidence 99998753 234566899999998886 5999999886321 1111111 1122333333 11112222
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+..++.||||||||++|||+|+.+|++|||||||+|||+.+...+.+.|+++++ |+|||+++|++.. + ..||++++
T Consensus 132 -~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~ 207 (236)
T cd03253 132 -GERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIV 207 (236)
T ss_pred -hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEE
Confidence 233567999999999999999999999999999999999999999999999987 9999999999864 5 45999999
Q ss_pred ecCCEEEeeCChhhHH
Q 036088 315 LSNGQAVCSEAPSNLS 330 (737)
Q Consensus 315 L~~G~iv~~G~~~~~~ 330 (737)
|++|+++..|+.+++.
T Consensus 208 l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 208 LKDGRIVERGTHEELL 223 (236)
T ss_pred EECCEEEeeCCHHHHh
Confidence 9999999998877654
No 263
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.1e-39 Score=333.54 Aligned_cols=191 Identities=25% Similarity=0.352 Sum_probs=162.8
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
.+++|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ..+...+.+.+||+
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~~~~tv~ 102 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFNPELTGR 102 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCCCCCcHH
Confidence 36799999999999999999999999999999999999875 48999999987531 11123455678999
Q ss_pred HHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 036088 194 ETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLD 273 (737)
Q Consensus 194 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD 273 (737)
||+.+..... .....+.+++++++++.+||.+..++.++ .||||||||++|||+|+.+|++|||||||+|||
T Consensus 103 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gLD 174 (224)
T cd03220 103 ENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 (224)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9998875432 12334455678899999999877766554 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeC
Q 036088 274 STSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSE 324 (737)
Q Consensus 274 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 324 (737)
+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|
T Consensus 175 ~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 175 AAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999877899999999976 577899999999999998765
No 264
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.6e-39 Score=374.76 Aligned_cols=231 Identities=23% Similarity=0.339 Sum_probs=188.9
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||++.|+.+... .++..+.+.+|+|+||++++||+++|+||||||||||+|+|+|+++ .+|+
T Consensus 274 ~~l~~~~l~~~~~~~~~~---------~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~ 341 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGI---------LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGE 341 (529)
T ss_pred CcccccCcEEEeecCccc---------cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcE
Confidence 479999999999521000 0000113569999999999999999999999999999999999973 3899
Q ss_pred EEECCEeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccc
Q 036088 161 VTLNGEVLGSK------LLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAM 231 (737)
Q Consensus 161 I~~~G~~~~~~------~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 231 (737)
|+++|+++... ..++.++||+|++ .+++.+||.||+.++...+. ......+.+++++++++.+||. ...+
T Consensus 342 i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~ 420 (529)
T PRK15134 342 IWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRH 420 (529)
T ss_pred EEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHh
Confidence 99999987531 1245689999996 48888999999998753221 1123344567889999999997 3555
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcc
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 310 (737)
+.+ ..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||
T Consensus 421 ~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d 494 (529)
T PRK15134 421 RYP-----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCH 494 (529)
T ss_pred cCC-----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcC
Confidence 544 469999999999999999999999999999999999999999999999875 899999999986 4788999
Q ss_pred eEEEecCCEEEeeCChhhHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~ 330 (737)
++++|++|+++..|+++++.
T Consensus 495 ~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 495 QVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred eEEEEECCEEEEEcCHHHHh
Confidence 99999999999999887763
No 265
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=359.68 Aligned_cols=218 Identities=26% Similarity=0.412 Sum_probs=195.4
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
+..++++|++++|+ ..++|+||||++++||++||+|.||||||||+|+|+|.++|+ +|
T Consensus 6 ~~ll~~~~i~K~Fg--------------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~--~G 63 (500)
T COG1129 6 PPLLELRGISKSFG--------------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD--SG 63 (500)
T ss_pred cceeeeecceEEcC--------------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC--Cc
Confidence 44799999999997 356999999999999999999999999999999999998854 99
Q ss_pred EEEECCEeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcC-CCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 160 TVTLNGEVLGSK----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRL-PRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 160 ~I~~~G~~~~~~----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
+|.++|++.... ....-++.|+|+..|+|+|||.|||.++...+. ..-++++...+++.++|+.+|+....+++|
T Consensus 64 ~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v 143 (500)
T COG1129 64 EILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV 143 (500)
T ss_pred eEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh
Confidence 999999998632 234457899999999999999999998876543 233667778889999999999965577777
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+ .||+||||-|.|||||..+++||+||||||.|+......+.+.+++|+++|.+||.+||.+. +++++||||.|
T Consensus 144 ~-----~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritV 217 (500)
T COG1129 144 G-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITV 217 (500)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEE
Confidence 6 49999999999999999999999999999999999999999999999999999999999986 69999999999
Q ss_pred ecCCEEEeeCC
Q 036088 315 LSNGQAVCSEA 325 (737)
Q Consensus 315 L~~G~iv~~G~ 325 (737)
|.||+.+..++
T Consensus 218 lRDG~~v~~~~ 228 (500)
T COG1129 218 LRDGRVVGTRP 228 (500)
T ss_pred EeCCEEeeecc
Confidence 99999998887
No 266
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.4e-40 Score=381.83 Aligned_cols=216 Identities=21% Similarity=0.353 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++|++++|+.. ++.+|+|+|+++++|+.++|+||||||||||+++|+|+++|. +|+|
T Consensus 313 ~I~~~~v~~~y~~~------------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~--~G~i 372 (569)
T PRK10789 313 ELDVNIRQFTYPQT------------------DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS--EGDI 372 (569)
T ss_pred cEEEEEEEEECCCC------------------CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCEE
Confidence 69999999999632 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-------ccccc
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-------RSAAM 231 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 231 (737)
.+||+++.. ..+++.++||+|++.+|+. |++|||.++.. ..+++ .+++.++..++ ++..|
T Consensus 373 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~----~~~~~~~~~~l~~~i~~lp~gl~ 442 (569)
T PRK10789 373 RFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-----DATQQ----EIEHVARLASVHDDILRLPQGYD 442 (569)
T ss_pred EECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCcCccc
Confidence 999998754 3467789999999999986 99999987632 12222 23334444333 45567
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
|.+|+ .+..||||||||++|||+|+++|++|+|||||++||+.++..+.+.|+++. +|+|+|+++|+++ ..+.+|+
T Consensus 443 t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~ 518 (569)
T PRK10789 443 TEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASE 518 (569)
T ss_pred ceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCE
Confidence 88875 466799999999999999999999999999999999999999999999985 5899999999985 4678999
Q ss_pred EEEecCCEEEeeCChhhHHH
Q 036088 312 LIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~~ 331 (737)
+++|++|+++..|+++++.+
T Consensus 519 i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 519 ILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999988753
No 267
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-41 Score=323.71 Aligned_cols=220 Identities=27% Similarity=0.456 Sum_probs=195.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+++++||+++|. .+.+|+++|++|++|.+++|+|||||||||||.+++++++.+ +|+|
T Consensus 1 MI~i~nv~K~y~--------------------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d--~G~i 58 (252)
T COG4604 1 MITIENVSKSYG--------------------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD--SGEI 58 (252)
T ss_pred CeeehhhhHhhC--------------------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc--CceE
Confidence 578899999996 477999999999999999999999999999999999998755 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
+++|+++.. ..+.+.++.+-|+..+-..+||+|-+.|+.--. ..+...++.+..+++.++.++|++..|+.+.
T Consensus 59 ~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd--- 134 (252)
T COG4604 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLD--- 134 (252)
T ss_pred EEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHH---
Confidence 999999864 345566788999999999999999999984211 1223345678899999999999998877764
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
+||||||||.-||..++.+.+.++||||.++||-..+.++|+.|++++++ |+||+++.||.+. +-.++|+|+-|++
T Consensus 135 --~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~ 211 (252)
T COG4604 135 --ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN 211 (252)
T ss_pred --hcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC
Confidence 69999999999999999999999999999999999999999999999986 9999999999875 6789999999999
Q ss_pred CEEEeeCChhhHH
Q 036088 318 GQAVCSEAPSNLS 330 (737)
Q Consensus 318 G~iv~~G~~~~~~ 330 (737)
|+++..|+++++.
T Consensus 212 G~vv~~G~~~eii 224 (252)
T COG4604 212 GKVVKQGSPDEII 224 (252)
T ss_pred CEEEecCCHHHhc
Confidence 9999999999875
No 268
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.2e-39 Score=373.03 Aligned_cols=224 Identities=24% Similarity=0.357 Sum_probs=186.1
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||++.|+... .+.+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+
T Consensus 278 ~~l~~~~l~~~~~~~~---------------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~--~G~ 340 (520)
T TIGR03269 278 PIIKVRNVSKRYISVD---------------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT--SGE 340 (520)
T ss_pred ceEEEeccEEEeccCC---------------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeE
Confidence 4799999999995210 01246999999999999999999999999999999999998754 899
Q ss_pred EEEC-CEe---CCc------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc--
Q 036088 161 VTLN-GEV---LGS------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-- 228 (737)
Q Consensus 161 I~~~-G~~---~~~------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-- 228 (737)
|.++ |.+ +.. ...++.++||+|++.+++.+||.||+.+..... .+....+++++++++.+||.+
T Consensus 341 i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~ 416 (520)
T TIGR03269 341 VNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEK 416 (520)
T ss_pred EEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCcc
Confidence 9996 642 221 123456899999998999999999998764321 223334567899999999974
Q ss_pred ---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHH
Q 036088 229 ---AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHR 304 (737)
Q Consensus 229 ---~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~ 304 (737)
..++. +..|||||||||+|||||+.+|++|||||||+|||+.+...+++.|++++++ |.|||++||++. .
T Consensus 417 ~~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~ 490 (520)
T TIGR03269 417 AEEILDKY-----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-F 490 (520)
T ss_pred chhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-H
Confidence 24444 4579999999999999999999999999999999999999999999999765 899999999986 5
Q ss_pred HHhhcceEEEecCCEEEeeCChhhHHH
Q 036088 305 ILSLLDRLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 305 i~~~~D~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+.++||++++|++|++++.|+++++.+
T Consensus 491 ~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 491 VLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 888999999999999999998877643
No 269
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=5.3e-40 Score=382.83 Aligned_cols=217 Identities=24% Similarity=0.394 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+|+|+.. .++.+|+|+|++++|||.++|+||||||||||+|+|+|+++|. +|+
T Consensus 336 ~~i~~~~v~f~y~~~-----------------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~--~G~ 396 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR-----------------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ--SGR 396 (576)
T ss_pred ceEEEEEEEEECCCC-----------------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCE
Confidence 369999999999732 1256999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-------ccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-------SAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~ 230 (737)
|.+||.+++. ..+++.++|+||++.+|++ |++|||.++.. ..+ ++++.+.++..|+. +..
T Consensus 397 I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~----~~~~~~~l~~~~l~~~i~~l~~gl 466 (576)
T TIGR02204 397 ILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRP-----DAT----DEEVEAAARAAHAHEFISALPEGY 466 (576)
T ss_pred EEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhCCCCC
Confidence 9999998864 3467789999999999987 99999988532 112 23345555555543 345
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
|+.+|+ .+..||||||||++|||+++++|++|+||||||+||+.++..+++.|+++. +++|+|++||+++ ..+.+|
T Consensus 467 ~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d 542 (576)
T TIGR02204 467 DTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKAD 542 (576)
T ss_pred CceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCC
Confidence 677764 456799999999999999999999999999999999999999999999985 4899999999985 468899
Q ss_pred eEEEecCCEEEeeCChhhHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~ 330 (737)
+|++|++|+++..|+++++.
T Consensus 543 ~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 543 RIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred EEEEEECCEEEeeecHHHHH
Confidence 99999999999999988764
No 270
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-39 Score=329.81 Aligned_cols=199 Identities=26% Similarity=0.370 Sum_probs=169.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++ .+|+|
T Consensus 2 ~l~~~~l~~~~~--------------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i 59 (207)
T PRK13539 2 MLEGEDLACVRG--------------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTI 59 (207)
T ss_pred EEEEEeEEEEEC--------------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceE
Confidence 689999999985 24599999999999999999999999999999999999874 48999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
.++|+++.....++.++|++|++.+++.+||+||+.+...... . ..++++++++.+||.+..+..+ +.
T Consensus 60 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~ 127 (207)
T PRK13539 60 KLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLPF-----GY 127 (207)
T ss_pred EECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCCh-----hh
Confidence 9999986432256678999999988888999999987654321 1 1245889999999987655544 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
||||||||++|||+|+.+|++|||||||+|||+.+...+.+.|++++++|+|||++||++.. +.+ |+++.+..
T Consensus 128 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~--~~~~~~~~ 200 (207)
T PRK13539 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LPG--ARELDLGP 200 (207)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hcc--CcEEeecC
Confidence 99999999999999999999999999999999999999999999998789999999999863 443 88887744
No 271
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.4e-39 Score=327.38 Aligned_cols=190 Identities=27% Similarity=0.342 Sum_probs=161.6
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+..+.+|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~ 60 (200)
T cd03217 1 LEIKDLHVSVG--------------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL 60 (200)
T ss_pred CeEEEEEEEeC--------------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEE
Confidence 46899999885 2459999999999999999999999999999999999952124589999
Q ss_pred ECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 163 LNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 163 ~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
++|+++.... .+..++|++|++.+++.+|+++++. . .
T Consensus 61 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~ 101 (200)
T cd03217 61 FKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----V 101 (200)
T ss_pred ECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----c
Confidence 9999886421 2345899999999999888888760 0 0
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHh-hcceEEEecC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILS-LLDRLIFLSN 317 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~-~~D~v~lL~~ 317 (737)
.+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+ .+|++++|++
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~ 180 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD 180 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC
Confidence 1359999999999999999999999999999999999999999999999877899999999986 4556 7999999999
Q ss_pred CEEEeeCChhhHHHHH
Q 036088 318 GQAVCSEAPSNLSQFF 333 (737)
Q Consensus 318 G~iv~~G~~~~~~~~f 333 (737)
|++++.|+. ++.+++
T Consensus 181 G~i~~~~~~-~~~~~~ 195 (200)
T cd03217 181 GRIVKSGDK-ELALEI 195 (200)
T ss_pred CEEEEEccH-HHHhhh
Confidence 999999944 454444
No 272
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.2e-39 Score=338.56 Aligned_cols=200 Identities=25% Similarity=0.397 Sum_probs=173.2
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc---cccceEEEEecCCCCCCCCCHH
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK---LLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
+|+|+||++++||+++|+||||||||||+++|+|+.+ . +|+|.++|+++... ..++.++|++|++.+++.+||+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999974 2 79999999987532 2345689999998888889999
Q ss_pred HHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 036088 194 ETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIH-------DPILLFLD 266 (737)
Q Consensus 194 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~-------~p~illLD 266 (737)
||+.+.... .....+..++++++++.+||.+..++.+ +.||||||||++||++|+. +|++||||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999886422 1223344567899999999987665544 4699999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhH
Q 036088 267 EPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 267 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
|||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999877999999999986 48899999999999999999987765
No 273
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=9.5e-40 Score=380.66 Aligned_cols=217 Identities=24% Similarity=0.377 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++|++|+|+. .+++|+|+|+++++||.+||+||||||||||+++|+|+++|. +|+|
T Consensus 334 ~i~~~~v~~~y~~-------------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i 392 (585)
T TIGR01192 334 AVEFRHITFEFAN-------------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT--VGQI 392 (585)
T ss_pred eEEEEEEEEECCC-------------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC--CCEE
Confidence 6999999999963 135899999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHH-----HHHHHHHHcCCccccccc
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRK-----RVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~ 233 (737)
.+||.++.. ..+++.++||+|++.+|+. |++|||.++.. ..++++..+ .+++.+.. +.+..|+.
T Consensus 393 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~a~~~~~~~~~i~~--l~~g~~t~ 464 (585)
T TIGR01192 393 LIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGRE-----GATDEEVYEAAKAAAAHDFILK--RSNGYDTL 464 (585)
T ss_pred EECCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHh--ccccccch
Confidence 999998754 3467789999999999985 99999988632 122222211 12233332 23445677
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
+|+ .+..||||||||++|||+|+++|++|+|||||||||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|+
T Consensus 465 ~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~ 540 (585)
T TIGR01192 465 VGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVL 540 (585)
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEE
Confidence 764 466799999999999999999999999999999999999999999999885 48999999999853 57799999
Q ss_pred EecCCEEEeeCChhhHHH
Q 036088 314 FLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|+++..|+++++.+
T Consensus 541 ~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 541 FLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred EEECCEEEEECCHHHHHH
Confidence 999999999999887754
No 274
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-39 Score=372.98 Aligned_cols=225 Identities=22% Similarity=0.384 Sum_probs=186.8
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||++.|+.. +++.+|+|+||++++||+++|+||||||||||+|+|+|++++ +.+|+
T Consensus 258 ~~l~~~~l~~~~~~~-----------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~ 319 (506)
T PRK13549 258 VILEVRNLTAWDPVN-----------------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGE 319 (506)
T ss_pred ceEEEecCccccccc-----------------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcE
Confidence 369999999988421 124599999999999999999999999999999999999863 24899
Q ss_pred EEECCEeCCcc----cccceEEEEecCC---CCCCCCCHHHHHHHhhhhcCC--CCCcHHHHHHHHHHHHHHcCCc-ccc
Q 036088 161 VTLNGEVLGSK----LLKIISAYVMQDD---LLYSMLTIEETLMFSAEFRLP--RSLSKEKKRKRVDALIDQLGLR-SAA 230 (737)
Q Consensus 161 I~~~G~~~~~~----~~~~~~~yV~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~-~~~ 230 (737)
|.++|+++... ..++.++||+|++ .+++.+||.||+.+....... ......+.+++++++++.+|+. +..
T Consensus 320 i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 399 (506)
T PRK13549 320 IFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASP 399 (506)
T ss_pred EEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCc
Confidence 99999987532 1244589999995 478889999999876421110 0012334456789999999996 456
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
++.++ .|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||
T Consensus 400 ~~~~~-----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d 473 (506)
T PRK13549 400 ELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSD 473 (506)
T ss_pred ccccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCC
Confidence 65554 69999999999999999999999999999999999999999999999888999999999986 5889999
Q ss_pred eEEEecCCEEEeeCChhhH
Q 036088 311 RLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~ 329 (737)
++++|++|+++..|+++++
T Consensus 474 ~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 474 RVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEEEEECCEEEEEeccccC
Confidence 9999999999998887664
No 275
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.2e-39 Score=336.80 Aligned_cols=201 Identities=26% Similarity=0.458 Sum_probs=173.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|
T Consensus 4 ~l~~~~l~~~~~--------------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~--~G~i 61 (251)
T PRK09544 4 LVSLENVSVSFG--------------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD--EGVI 61 (251)
T ss_pred EEEEeceEEEEC--------------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEE
Confidence 699999999995 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCC--CCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSM--LTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~--lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
.++|. ..++|++|++.+++. .|+.+++.+.. .. ..+++.++++.+||.+..++.+
T Consensus 62 ~~~~~--------~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~----- 118 (251)
T PRK09544 62 KRNGK--------LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GT----KKEDILPALKRVQAGHLIDAPM----- 118 (251)
T ss_pred EECCc--------cCEEEeccccccccccChhHHHHHhccc------cc----cHHHHHHHHHHcCChHHHhCCh-----
Confidence 99872 358999999887775 37888775421 11 1245788999999987776554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
+.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++
T Consensus 119 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~- 196 (251)
T PRK09544 119 QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH- 196 (251)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-
Confidence 469999999999999999999999999999999999999999999999875 899999999986 57889999999964
Q ss_pred EEEeeCChhhH
Q 036088 319 QAVCSEAPSNL 329 (737)
Q Consensus 319 ~iv~~G~~~~~ 329 (737)
+++..|+++++
T Consensus 197 ~i~~~g~~~~~ 207 (251)
T PRK09544 197 HICCSGTPEVV 207 (251)
T ss_pred ceEeeCCHHHH
Confidence 79999988765
No 276
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=9.6e-40 Score=336.26 Aligned_cols=212 Identities=25% Similarity=0.438 Sum_probs=171.3
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++|++++|+.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+
T Consensus 10 ~~l~~~~l~~~~~~~-----------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~ 70 (226)
T cd03248 10 GIVKFQNVTFAYPTR-----------------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ--GGQ 70 (226)
T ss_pred ceEEEEEEEEEeCCC-----------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CcE
Confidence 479999999999632 1245999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHc--CCccccccccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQL--GLRSAAMTIIG 235 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~vg 235 (737)
|.++|+++.. ...++.++|++|++.+++ .||+||+.++..........+......++++++.+ |+.+..+.
T Consensus 71 i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~--- 146 (226)
T cd03248 71 VLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE--- 146 (226)
T ss_pred EEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc---
Confidence 9999988743 234556899999998887 59999998754311000000111223467888888 67655443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++||++.. + +.||++++|
T Consensus 147 --~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l 221 (226)
T cd03248 147 --KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQILVL 221 (226)
T ss_pred --CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEEEEe
Confidence 3457999999999999999999999999999999999999999999999875 6899999999864 5 459999999
Q ss_pred cCCEE
Q 036088 316 SNGQA 320 (737)
Q Consensus 316 ~~G~i 320 (737)
++|++
T Consensus 222 ~~g~i 226 (226)
T cd03248 222 DGGRI 226 (226)
T ss_pred cCCcC
Confidence 99874
No 277
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6.1e-40 Score=378.56 Aligned_cols=188 Identities=29% Similarity=0.450 Sum_probs=159.5
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+|+|+. ++++|+|+|+++++||.+||+||||||||||+|+|+|+++|. +|+
T Consensus 333 ~~I~~~~vsf~Y~~-------------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~--~G~ 391 (529)
T TIGR02868 333 PTLELRDLSFGYPG-------------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL--QGE 391 (529)
T ss_pred ceEEEEEEEEecCC-------------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcE
Confidence 36999999999963 135999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-------ccccc
Q 036088 161 VTLNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-------RSAAM 231 (737)
Q Consensus 161 I~~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 231 (737)
|.+||.++.+ ..+|+.++||+|++.+|+. |++|||.++.+ +.++ +++++.++..++ ++..|
T Consensus 392 I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~Gld 461 (529)
T TIGR02868 392 VTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP-----DATD----EELWAALERVGLADWLRSLPDGLD 461 (529)
T ss_pred EEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCC-----CCCH----HHHHHHHHHcCCHHHHHhCccccc
Confidence 9999998764 4567789999999999997 99999998632 1122 234444444443 45678
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCC
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQP 301 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 301 (737)
|.+|+ .+..||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++. +++|+|+++|++
T Consensus 462 T~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 462 TVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred chhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99985 456799999999999999999999999999999999999999999999874 479999999984
No 278
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-39 Score=321.43 Aligned_cols=172 Identities=35% Similarity=0.531 Sum_probs=154.7
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|+ .+++|+|+||++++||+++|+||||||||||+++|+|.+++ .+|+|.
T Consensus 1 i~~~~l~~~~~--------------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~ 58 (178)
T cd03229 1 LELKNVSKRYG--------------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSIL 58 (178)
T ss_pred CEEEEEEEEEC--------------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEE
Confidence 46899999885 24599999999999999999999999999999999999875 489999
Q ss_pred ECCEeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 163 LNGEVLGS-----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 163 ~~G~~~~~-----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
++|+++.. ...++.++|++|++.+++.+|++||+.+.
T Consensus 59 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------------------------------------- 100 (178)
T cd03229 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG-------------------------------------- 100 (178)
T ss_pred ECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec--------------------------------------
Confidence 99998753 23456789999999999889999998642
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEec
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.||++++|+
T Consensus 101 ----lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~ 175 (178)
T cd03229 101 ----LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLR 175 (178)
T ss_pred ----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 8999999999999999999999999999999999999999999999887 899999999976 4777999999999
Q ss_pred CCE
Q 036088 317 NGQ 319 (737)
Q Consensus 317 ~G~ 319 (737)
+|+
T Consensus 176 ~g~ 178 (178)
T cd03229 176 DGK 178 (178)
T ss_pred CCC
Confidence 884
No 279
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3e-39 Score=331.33 Aligned_cols=209 Identities=23% Similarity=0.347 Sum_probs=172.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++|++++|+.. .+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|
T Consensus 2 ~l~~~~l~~~~~~~------------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i 61 (221)
T cd03244 2 DIEFKNVSLRYRPN------------------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL--SSGSI 61 (221)
T ss_pred cEEEEEEEEecCCC------------------CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEE
Confidence 47899999999631 24699999999999999999999999999999999999875 48999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccc-------
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM------- 231 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------- 231 (737)
.++|.++.. ...++.++|++|++.+++ .||+||+.+... .. .+++.+.++.+++.+..+
T Consensus 62 ~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~ 130 (221)
T cd03244 62 LIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLD 130 (221)
T ss_pred EECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhcccccc
Confidence 999998753 234667899999998887 499999965321 11 234556666666654332
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
+.. +..+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||++||++.. + ..||+
T Consensus 131 ~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~ 206 (221)
T cd03244 131 TVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-I-IDSDR 206 (221)
T ss_pred ccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-hhCCE
Confidence 122 235668999999999999999999999999999999999999999999999864 6899999999864 5 45999
Q ss_pred EEEecCCEEEeeCC
Q 036088 312 LIFLSNGQAVCSEA 325 (737)
Q Consensus 312 v~lL~~G~iv~~G~ 325 (737)
+++|++|++++.|+
T Consensus 207 i~~l~~g~~~~~~~ 220 (221)
T cd03244 207 ILVLDKGRVVEFDS 220 (221)
T ss_pred EEEEECCeEEecCC
Confidence 99999999998875
No 280
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=5.3e-39 Score=330.28 Aligned_cols=211 Identities=25% Similarity=0.321 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||++.|+...+ .+.++.+|+|+||+|++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 1 ml~~~~l~~~~~~~~~-------------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i 65 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQ-------------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD--SGRI 65 (224)
T ss_pred CEEEEeeEEEeecccC-------------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeE
Confidence 4789999999963210 001246999999999999999999999999999999999998754 8999
Q ss_pred EEC--CE--eCCc---cc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-
Q 036088 162 TLN--GE--VLGS---KL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA- 229 (737)
Q Consensus 162 ~~~--G~--~~~~---~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~- 229 (737)
.++ |+ ++.. .. .++.++|++|++.+++.+||+||+.+..... ........+++.++++.+|+.+.
T Consensus 66 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~ 142 (224)
T TIGR02324 66 LVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERL 142 (224)
T ss_pred EEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhh
Confidence 998 43 4321 11 1345899999999999999999998864322 22334445678899999999753
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhc
Q 036088 230 AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 230 ~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 309 (737)
.+.. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++|
T Consensus 143 ~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~ 216 (224)
T TIGR02324 143 WHLP-----PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVA 216 (224)
T ss_pred hhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhc
Confidence 3333 4579999999999999999999999999999999999999999999999877999999999964 466799
Q ss_pred ceEEEec
Q 036088 310 DRLIFLS 316 (737)
Q Consensus 310 D~v~lL~ 316 (737)
|+++.+.
T Consensus 217 d~i~~~~ 223 (224)
T TIGR02324 217 DRVMDVT 223 (224)
T ss_pred ceeEecC
Confidence 9998763
No 281
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=4e-39 Score=325.16 Aligned_cols=195 Identities=25% Similarity=0.327 Sum_probs=166.2
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~ 58 (198)
T TIGR01189 1 LAARNLACSRG--------------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD--SGEVR 58 (198)
T ss_pred CEEEEEEEEEC--------------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ccEEE
Confidence 46889999885 246999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 163 LNGEVLGSK--LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 163 ~~G~~~~~~--~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
++|+++... ..++.++|++|++.+++.+||.||+.+....+. . .+++++++++.+|+.+..++.++
T Consensus 59 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~----- 126 (198)
T TIGR01189 59 WNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G---AQRTIEDALAAVGLTGFEDLPAA----- 126 (198)
T ss_pred ECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C---cHHHHHHHHHHcCCHHHhcCChh-----
Confidence 999987532 244568999999989998999999988654321 1 13467889999999877666554
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++.. -.+++++.
T Consensus 127 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 699999999999999999999999999999999999999999999998789999999999753 34677654
No 282
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=371.33 Aligned_cols=216 Identities=22% Similarity=0.393 Sum_probs=181.2
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++|+++.+. .+|+|+||++++||+++|+||||||||||||+|+|+.+|. +|+
T Consensus 264 ~~l~~~~l~~~~~----------------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~--~G~ 319 (510)
T PRK09700 264 TVFEVRNVTSRDR----------------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA--GGE 319 (510)
T ss_pred cEEEEeCccccCC----------------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC--CCe
Confidence 4799999987531 2899999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcc----cccceEEEEecC---CCCCCCCCHHHHHHHhhhhc---CCC--C-CcHHHHHHHHHHHHHHcCCc
Q 036088 161 VTLNGEVLGSK----LLKIISAYVMQD---DLLYSMLTIEETLMFSAEFR---LPR--S-LSKEKKRKRVDALIDQLGLR 227 (737)
Q Consensus 161 I~~~G~~~~~~----~~~~~~~yV~Q~---~~l~~~lTV~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~ 227 (737)
|.++|+++... ..++.+|||+|+ ..+++.+||.||+.+....+ ... . ......+++++++++.+||.
T Consensus 320 I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 399 (510)
T PRK09700 320 IRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399 (510)
T ss_pred EEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC
Confidence 99999987531 234568999998 46889999999998764311 000 0 12233346788999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHH
Q 036088 228 -SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRIL 306 (737)
Q Consensus 228 -~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 306 (737)
+..++.++ .|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||+. .+.
T Consensus 400 ~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~ 473 (510)
T PRK09700 400 CHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EII 473 (510)
T ss_pred CCCccCccc-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHH
Confidence 66666554 69999999999999999999999999999999999999999999999888999999999986 588
Q ss_pred hhcceEEEecCCEEEeeCCh
Q 036088 307 SLLDRLIFLSNGQAVCSEAP 326 (737)
Q Consensus 307 ~~~D~v~lL~~G~iv~~G~~ 326 (737)
++||++++|++|+++..++.
T Consensus 474 ~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 474 TVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred hhCCEEEEEECCEEEEEecC
Confidence 99999999999999988765
No 283
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.9e-39 Score=320.33 Aligned_cols=172 Identities=28% Similarity=0.477 Sum_probs=154.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++| +|+++|+++++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 4 ~l~~~~l~~~~------------------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i 57 (182)
T cd03215 4 VLEVRGLSVKG------------------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA--SGEI 57 (182)
T ss_pred EEEEeccEEEe------------------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceE
Confidence 68899998755 689999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc----cccceEEEEecCC---CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 162 TLNGEVLGSK----LLKIISAYVMQDD---LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 162 ~~~G~~~~~~----~~~~~~~yV~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
.++|+++... ..++.++|++|++ .+++.+|++||+.+...
T Consensus 58 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~--------------------------------- 104 (182)
T cd03215 58 TLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL--------------------------------- 104 (182)
T ss_pred EECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh---------------------------------
Confidence 9999987542 2356789999984 57888999999977421
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.++||++++
T Consensus 105 -------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~ 176 (182)
T cd03215 105 -------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILV 176 (182)
T ss_pred -------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 8999999999999999999999999999999999999999999999877899999999976 58889999999
Q ss_pred ecCCEE
Q 036088 315 LSNGQA 320 (737)
Q Consensus 315 L~~G~i 320 (737)
|++|++
T Consensus 177 l~~G~i 182 (182)
T cd03215 177 MYEGRI 182 (182)
T ss_pred ecCCcC
Confidence 999974
No 284
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.2e-39 Score=325.54 Aligned_cols=195 Identities=23% Similarity=0.334 Sum_probs=167.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++|. ++++|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|
T Consensus 1 ml~~~~l~~~~~--------------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v 58 (200)
T PRK13540 1 MLDVIELDFDYH--------------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEI 58 (200)
T ss_pred CEEEEEEEEEeC--------------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeeE
Confidence 478999999985 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 162 TLNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 162 ~~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
+++|+++.. ...++.++|++|+..+++.+||+||+.+..... . .+.+++++++.+++.+..+..++
T Consensus 59 ~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~~~---- 126 (200)
T PRK13540 59 LFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYPCG---- 126 (200)
T ss_pred EECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCChh----
Confidence 999998753 234567899999998988899999999864211 1 12468899999999876655544
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++.. .+.+|..+
T Consensus 127 -~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 127 -LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred -hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 699999999999999999999999999999999999999999999998779999999999753 56677654
No 285
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-39 Score=302.92 Aligned_cols=217 Identities=26% Similarity=0.415 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++|+++.|. ..++|.||+++.+.||.+.++||||||||||++.|.=+..|. +|+.
T Consensus 2 sirv~~in~~yg--------------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~--sg~l 59 (242)
T COG4161 2 SIQLNGINCFYG--------------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTL 59 (242)
T ss_pred ceEEcccccccc--------------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC--CCeE
Confidence 478999999996 356999999999999999999999999999999999886644 8999
Q ss_pred EECCEeCC--c-------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc
Q 036088 162 TLNGEVLG--S-------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 162 ~~~G~~~~--~-------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 232 (737)
.+.|...+ . ...|+.+|+|+|+-.|+|++||.|||.-+- .+. .++++.+.+.++.++|+.|.|.+.+|.
T Consensus 60 ~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr 137 (242)
T COG4161 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADR 137 (242)
T ss_pred EecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhcccccccc
Confidence 99876442 1 235677899999999999999999986542 222 256788889999999999999998865
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
. +-.|||||+|||+|||||+.+|.+|++||||++|||+-..++++++++|+..|.|-+++||... -..+.+.+|
T Consensus 138 ~-----plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~v 211 (242)
T COG4161 138 Y-----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRV 211 (242)
T ss_pred C-----ceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhhe
Confidence 4 4569999999999999999999999999999999999999999999999999999999999986 467899999
Q ss_pred EEecCCEEEeeCChhh
Q 036088 313 IFLSNGQAVCSEAPSN 328 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~ 328 (737)
+.|++|+|++.|+.+.
T Consensus 212 vyme~g~ive~g~a~~ 227 (242)
T COG4161 212 VYMENGHIVEQGDASC 227 (242)
T ss_pred EeeecCeeEeecchhh
Confidence 9999999999998753
No 286
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.8e-39 Score=317.77 Aligned_cols=170 Identities=31% Similarity=0.498 Sum_probs=152.0
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+.. .+.+++++|+++++||+++|+|||||||||||++|+|+.++. +|+|.
T Consensus 1 i~~~~l~~~~~~~------------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~ 60 (173)
T cd03246 1 LEVENVSFRYPGA------------------EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT--SGRVR 60 (173)
T ss_pred CEEEEEEEEcCCC------------------CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeEE
Confidence 4689999988621 245999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 163 LNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 163 ~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
++|+++.. ...++.++|++|++.+++. ||+||+
T Consensus 61 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l------------------------------------------- 96 (173)
T cd03246 61 LDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI------------------------------------------- 96 (173)
T ss_pred ECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC-------------------------------------------
Confidence 99998753 2345678999999988885 999987
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|++|+
T Consensus 97 --LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~ 172 (173)
T cd03246 97 --LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGR 172 (173)
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCC
Confidence 8999999999999999999999999999999999999999999999877999999999985 34 6899999999987
Q ss_pred E
Q 036088 320 A 320 (737)
Q Consensus 320 i 320 (737)
+
T Consensus 173 i 173 (173)
T cd03246 173 V 173 (173)
T ss_pred C
Confidence 4
No 287
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.4e-39 Score=368.90 Aligned_cols=209 Identities=21% Similarity=0.269 Sum_probs=179.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++|+ .+.+|+|+||++++||+++|+||||||||||||+|+|+++++ +|+|
T Consensus 3 ~l~~~~l~~~~~--------------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~--~G~i 60 (490)
T PRK10938 3 SLQISQGTFRLS--------------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL--SGER 60 (490)
T ss_pred eEEEEeEEEEcC--------------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CceE
Confidence 689999999995 245999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCC--C------CCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccc
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLL--Y------SMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAA 230 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l--~------~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 230 (737)
.++|.++.. ...++.++|++|++.+ + ..+||+|++.+. ...+++++++++.+||.+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~ 129 (490)
T PRK10938 61 QSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALL 129 (490)
T ss_pred EECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhh
Confidence 999987642 1234558999998642 1 147888887542 12346788999999998777
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
+..++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||
T Consensus 130 ~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d 203 (490)
T PRK10938 130 DRRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQ 203 (490)
T ss_pred hCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCC
Confidence 66554 69999999999999999999999999999999999999999999999888999999999986 5789999
Q ss_pred eEEEecCCEEEeeCChhhH
Q 036088 311 RLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~ 329 (737)
++++|++|+++..|+++++
T Consensus 204 ~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 204 FAGVLADCTLAETGEREEI 222 (490)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999988765
No 288
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.4e-39 Score=368.91 Aligned_cols=224 Identities=22% Similarity=0.401 Sum_probs=185.0
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++|++++|..+ +++.+|+|+||++++||+++|+||||||||||||+|+|+.+| +.+|+
T Consensus 256 ~~l~~~~l~~~~~~~-----------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~ 317 (500)
T TIGR02633 256 VILEARNLTCWDVIN-----------------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGN 317 (500)
T ss_pred ceEEEeCCccccccc-----------------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeE
Confidence 379999999887321 124599999999999999999999999999999999999864 23899
Q ss_pred EEECCEeCCcc----cccceEEEEecCC---CCCCCCCHHHHHHHhhhhcCC--CCCcHHHHHHHHHHHHHHcCCcc-cc
Q 036088 161 VTLNGEVLGSK----LLKIISAYVMQDD---LLYSMLTIEETLMFSAEFRLP--RSLSKEKKRKRVDALIDQLGLRS-AA 230 (737)
Q Consensus 161 I~~~G~~~~~~----~~~~~~~yV~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~ 230 (737)
|.++|+++... ..++.++||+|+. .+++.+||+||+.++...... ........+++++++++.+++.+ ..
T Consensus 318 i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 397 (500)
T TIGR02633 318 VFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASP 397 (500)
T ss_pred EEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCc
Confidence 99999987531 2355689999995 588999999999875421110 01223344567899999999964 45
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
++.++ .|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||
T Consensus 398 ~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d 471 (500)
T TIGR02633 398 FLPIG-----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSD 471 (500)
T ss_pred cCccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCC
Confidence 55554 69999999999999999999999999999999999999999999999888999999999986 5889999
Q ss_pred eEEEecCCEEEeeCChhh
Q 036088 311 RLIFLSNGQAVCSEAPSN 328 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~ 328 (737)
++++|++|+++..++.++
T Consensus 472 ~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 472 RVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred EEEEEECCEEEEEEcccc
Confidence 999999999998775543
No 289
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5.5e-39 Score=318.80 Aligned_cols=176 Identities=31% Similarity=0.534 Sum_probs=154.7
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+.. .+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.
T Consensus 1 i~~~~~~~~~~~~------------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~ 60 (178)
T cd03247 1 LSINNVSFSYPEQ------------------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEIT 60 (178)
T ss_pred CEEEEEEEEeCCC------------------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCEEE
Confidence 4789999998521 135999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 163 LNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 163 ~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
++|+++.. ...++.++|++|++.+++ .||+||+ +.
T Consensus 61 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~ 97 (178)
T cd03247 61 LDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GR 97 (178)
T ss_pred ECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cc
Confidence 99998743 234567899999998887 5999987 23
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||+++|++.. + +.+|++++|++|++
T Consensus 98 ~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i 174 (178)
T cd03247 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKI 174 (178)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEE
Confidence 599999999999999999999999999999999999999999999996 58999999999864 4 57999999999999
Q ss_pred EeeC
Q 036088 321 VCSE 324 (737)
Q Consensus 321 v~~G 324 (737)
++.|
T Consensus 175 ~~~~ 178 (178)
T cd03247 175 IMQG 178 (178)
T ss_pred EecC
Confidence 8754
No 290
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.6e-39 Score=335.75 Aligned_cols=216 Identities=21% Similarity=0.331 Sum_probs=173.3
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++|++++|+.. .+.+|+|+||++++||+++|+|+||||||||+++|+|++++ .+|+
T Consensus 18 ~~i~~~~l~~~~~~~------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~ 77 (257)
T cd03288 18 GEIKIHDLCVRYENN------------------LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI--FDGK 77 (257)
T ss_pred ceEEEEEEEEEeCCC------------------CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC--CCCe
Confidence 469999999999631 24699999999999999999999999999999999999874 4899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHH-----HHHHHHHHHHHc--CCcccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEK-----KRKRVDALIDQL--GLRSAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~ 230 (737)
|.++|+++.. ...++.++||+|++.+++. ||+||+..... ..... ....+++.++.+ |++
T Consensus 78 i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~l~--- 147 (257)
T cd03288 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPECK------CTDDRLWEALEIAQLKNMVKSLPGGLD--- 147 (257)
T ss_pred EEECCEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCCC------CCHHHHHHHHHHhCcHHHHhhcccccC---
Confidence 9999998753 2346678999999988875 99999854211 11111 111233344444 333
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
+.++ .....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++.. +. .||
T Consensus 148 -~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~d 222 (257)
T cd03288 148 -AVVT-EGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DAD 222 (257)
T ss_pred -cEec-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCC
Confidence 2232 3456799999999999999999999999999999999999999999999975 48999999999874 54 599
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
++++|++|+++..|+++++.+
T Consensus 223 ri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 223 LVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred EEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999877643
No 291
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-38 Score=353.12 Aligned_cols=214 Identities=24% Similarity=0.348 Sum_probs=179.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+++++||++.+..+ ..+.+|+|+||++++|++++|+|||||||||||++|+|+.+|. +|+|
T Consensus 21 mL~lknL~~~~~~~-----------------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~--sGeI 81 (549)
T PRK13545 21 FDKLKDLFFRSKDG-----------------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN--KGTV 81 (549)
T ss_pred eeEEEEEEEecCCC-----------------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--ceEE
Confidence 57777777776522 1246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
.++|.+. ++.+...+.+.+||+||+.+..... ..+..+..++++++++.++|.+..++.+ +.
T Consensus 82 ~I~G~~~----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~ 143 (549)
T PRK13545 82 DIKGSAA----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KT 143 (549)
T ss_pred EECCEee----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----cc
Confidence 9999752 1223445677789999998754322 2334455567889999999987776554 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAV 321 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 321 (737)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++|++|+++
T Consensus 144 LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv 222 (549)
T PRK13545 144 YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVK 222 (549)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999878999999999986 578899999999999999
Q ss_pred eeCChhhHHHHH
Q 036088 322 CSEAPSNLSQFF 333 (737)
Q Consensus 322 ~~G~~~~~~~~f 333 (737)
+.|+++++...+
T Consensus 223 ~~G~~~el~~~~ 234 (549)
T PRK13545 223 EYGDIKEVVDHY 234 (549)
T ss_pred EECCHHHHHhhH
Confidence 999998875543
No 292
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.2e-39 Score=408.89 Aligned_cols=218 Identities=18% Similarity=0.285 Sum_probs=184.7
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+|+||+++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|++++. +|+
T Consensus 1236 g~I~f~nVsf~Y~~~------------------~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~--~G~ 1295 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPE------------------LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE--RGR 1295 (1622)
T ss_pred CcEEEEEEEEEeCCC------------------CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC--Cce
Confidence 369999999999632 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHH-----HHHHHHHHHHHcCCcccccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEK-----KRKRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~ 232 (737)
|.+||.++.. ..+|+.+++||||+.+|++ ||+|||.++.. .++++ ++..+++.++.+ +...||
T Consensus 1296 I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~------~tdeei~~Al~~a~l~~~I~~l--p~GLdt 1366 (1622)
T PLN03130 1296 ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNE------HNDADLWESLERAHLKDVIRRN--SLGLDA 1366 (1622)
T ss_pred EEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCC------CCHHHHHHHHHHcCcHHHHHhC--ccccCc
Confidence 9999999865 4578889999999999998 99999976421 22222 122233444433 345788
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.||+ .+..||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++. ...||+|
T Consensus 1367 ~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrI 1442 (1622)
T PLN03130 1367 EVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRI 1442 (1622)
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEE
Confidence 8874 556799999999999999999999999999999999999999999999985 48999999999874 5679999
Q ss_pred EEecCCEEEeeCChhhHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~ 331 (737)
++|++|++++.|+++++.+
T Consensus 1443 lVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1443 LVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EEEECCEEEEeCCHHHHHh
Confidence 9999999999999999864
No 293
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.9e-38 Score=322.32 Aligned_cols=199 Identities=21% Similarity=0.327 Sum_probs=165.5
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++|++++|+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|
T Consensus 6 ~l~~~~l~~~~~~~------------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i 65 (207)
T cd03369 6 EIEVENLSVRYAPD------------------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE--EGKI 65 (207)
T ss_pred eEEEEEEEEEeCCC------------------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCeE
Confidence 68999999999631 235999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
.++|+++.. ...++.++||+|++.+++. ||+||+.+.. .... +.+.+.++ + +..
T Consensus 66 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~---~---------~~~ 122 (207)
T cd03369 66 EIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR---V---------SEG 122 (207)
T ss_pred EECCEEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh---c---------cCC
Confidence 999998743 2345678999999988875 9999997532 1111 12333333 2 234
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
+..||||||||++|||+|+.+|+++||||||+|||+.+...+.+.|+++. +|+|+|++||++.. +. .+|++++|++|
T Consensus 123 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g 199 (207)
T cd03369 123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAG 199 (207)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECC
Confidence 56799999999999999999999999999999999999999999999985 48999999999864 54 49999999999
Q ss_pred EEEeeCCh
Q 036088 319 QAVCSEAP 326 (737)
Q Consensus 319 ~iv~~G~~ 326 (737)
+++..|++
T Consensus 200 ~i~~~g~~ 207 (207)
T cd03369 200 EVKEYDHP 207 (207)
T ss_pred EEEecCCC
Confidence 99988763
No 294
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.2e-39 Score=408.42 Aligned_cols=216 Identities=16% Similarity=0.269 Sum_probs=184.4
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+|+||+++|+.. .+++|+|+|++|++||.+||+||||||||||+++|.|++++. +|+
T Consensus 1233 g~I~f~nVsf~Y~~~------------------~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~--~G~ 1292 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPG------------------LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE--KGR 1292 (1495)
T ss_pred CcEEEEEEEEEECCC------------------CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC--Cce
Confidence 369999999999532 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-------cccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-------RSAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~ 230 (737)
|.+||.|++. ..+|+.++|||||+.+|++ |++|||.+.. ..++ +.+.+.++..++ ++..
T Consensus 1293 I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GL 1361 (1495)
T PLN03232 1293 IMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGL 1361 (1495)
T ss_pred EEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCC
Confidence 9999999864 4578889999999999997 9999997642 1222 234444444443 3456
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
||.+|+ .+..||||||||++|||||+++|+||+||||||+||++++..|.+.|++.. +++|+|+++|+++. ...||
T Consensus 1362 dt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~D 1437 (1495)
T PLN03232 1362 DAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCD 1437 (1495)
T ss_pred CceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCC
Confidence 888874 556799999999999999999999999999999999999999999999875 48999999999864 56799
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++|++++.|+++++.+
T Consensus 1438 rIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1438 KILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999863
No 295
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.1e-38 Score=319.71 Aligned_cols=177 Identities=28% Similarity=0.467 Sum_probs=151.9
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc-----cccceEEEEecCC--CCC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK-----LLKIISAYVMQDD--LLY 187 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yV~Q~~--~l~ 187 (737)
+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|+++... ..++.++|++|++ .++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ--SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 56999999999999999999999999999999999998754 89999999987421 2355689999997 355
Q ss_pred CCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 036088 188 SMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDE 267 (737)
Q Consensus 188 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDE 267 (737)
+ .||+||+.+..... .....+..++++++++.+||.+..++.+ ..||||||||++|||+|+.+|++|+|||
T Consensus 83 ~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 83 A-ADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred c-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4 69999999865422 2334445567899999999987666554 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCc
Q 036088 268 PISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPS 302 (737)
Q Consensus 268 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 302 (737)
||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999878999999999975
No 296
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=328.81 Aligned_cols=195 Identities=30% Similarity=0.454 Sum_probs=173.4
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCc-------ccccceEEEEecCCCCCCCCC
Q 036088 119 DDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS-------KLLKIISAYVMQDDLLYSMLT 191 (737)
Q Consensus 119 ~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-------~~~~~~~~yV~Q~~~l~~~lT 191 (737)
=++++..+.-.++||-|+||||||||+|+|+|+.+|+ +|.|.+||+.+.+ ...++++||||||-.|||++|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 3677777775799999999999999999999998865 8999999987643 235678999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 036088 192 IEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISG 271 (737)
Q Consensus 192 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsg 271 (737)
|+.||.|+.... .....+++++.||+++..+.. +..|||||||||+|+|||++.|++|+||||.+.
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~-----P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRY-----PGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhhC-----CCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986431 345688999999999988654 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 272 LDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 272 LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
||-....+++-.|.+|.++ ..-|+.+||.+. |+.+++|+|++|++|++..+|+.+++.
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHh
Confidence 9999999999999999986 667999999986 699999999999999999999998874
No 297
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3e-39 Score=372.74 Aligned_cols=200 Identities=28% Similarity=0.455 Sum_probs=169.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+|+|+.. ++++|+|+|+++++||.+||+||||||||||+|+|+|+++|. +|+|
T Consensus 320 ~i~~~~v~f~y~~~------------------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~I 379 (529)
T TIGR02857 320 SLEFSGLSVAYPGR------------------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSI 379 (529)
T ss_pred eEEEEEEEEECCCC------------------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEE
Confidence 69999999999732 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-------ccccc
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-------RSAAM 231 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 231 (737)
.+||.++.+ ..+++.++||+|++.+|+. |++|||.++... .++ +.+++.++..++ ++..|
T Consensus 380 ~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~-----~~~----~~i~~a~~~~~l~~~i~~lp~Gld 449 (529)
T TIGR02857 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARPD-----ASD----AEIRRALERAGLDEFVAALPQGLD 449 (529)
T ss_pred EECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCCC-----CCH----HHHHHHHHHcCcHHHHHhCccccc
Confidence 999998864 4567789999999999986 999999886421 122 234444444444 33468
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
|.+|+ .+..||||||||++|||+|+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.||+
T Consensus 450 t~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ 525 (529)
T TIGR02857 450 TLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADR 525 (529)
T ss_pred chhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCE
Confidence 88875 556799999999999999999999999999999999999999999999985 5899999999985 3678999
Q ss_pred EEEe
Q 036088 312 LIFL 315 (737)
Q Consensus 312 v~lL 315 (737)
|++|
T Consensus 526 i~~l 529 (529)
T TIGR02857 526 IVVL 529 (529)
T ss_pred EEeC
Confidence 9875
No 298
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.7e-38 Score=332.12 Aligned_cols=236 Identities=25% Similarity=0.385 Sum_probs=205.3
Q ss_pred CCCCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 036088 77 PNYPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR 156 (737)
Q Consensus 77 ~~~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~ 156 (737)
...|+.|+.+||...|+.+.+++++ ......++++||+++++||.++|+|.||||||||=.+|.+++++
T Consensus 271 ~~~~~ll~~~~v~v~f~i~~g~~~r---------~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s-- 339 (534)
T COG4172 271 EDAPVLLEVEDLRVWFPIKGGFLRR---------TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-- 339 (534)
T ss_pred CCCCceEEecceEEEEecCCccccc---------cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc--
Confidence 3467789999999999876544321 12345699999999999999999999999999999999999863
Q ss_pred cceEEEECCEeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc
Q 036088 157 LKGTVTLNGEVLGSK------LLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS 228 (737)
Q Consensus 157 ~~G~I~~~G~~~~~~------~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 228 (737)
+|+|.++|+++... ..|+.+-.||||+ .|-|.+||.|-|.-+.....+ ..+.+++++++.+.|+++||+.
T Consensus 340 -~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp 417 (534)
T COG4172 340 -QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDP 417 (534)
T ss_pred -CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCCh
Confidence 59999999998642 3567788999998 589999999999988766543 5688999999999999999975
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHh
Q 036088 229 AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILS 307 (737)
Q Consensus 229 ~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 307 (737)
.. . +.++.+.|||||||++||||++.+|++++||||||+||-.-..+|+++|++|.++ |.+-++++||.. -+..
T Consensus 418 ~~--r--~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrA 492 (534)
T COG4172 418 AT--R--NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRA 492 (534)
T ss_pred hH--h--hcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHH
Confidence 32 1 5677899999999999999999999999999999999999999999999999764 899999999986 5888
Q ss_pred hcceEEEecCCEEEeeCChhhHH
Q 036088 308 LLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 308 ~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
+||+|+||++|+||+.|+.+++.
T Consensus 493 l~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 493 LCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred hhceEEEEeCCEEeeeCCHHHHh
Confidence 99999999999999999998874
No 299
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-38 Score=311.71 Aligned_cols=234 Identities=26% Similarity=0.326 Sum_probs=202.6
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||++++.. ++.||++||++|++||+.|||||||||||||.++|+|.-....++|+
T Consensus 2 ~~L~I~dLhv~v~~-------------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~ 62 (251)
T COG0396 2 MMLEIKDLHVEVEG-------------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE 62 (251)
T ss_pred ceeEEeeeEEEecC-------------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecce
Confidence 37999999999862 15799999999999999999999999999999999999665677999
Q ss_pred EEECCEeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-ccccccc
Q 036088 161 VTLNGEVLGSK----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-AAMTIIG 235 (737)
Q Consensus 161 I~~~G~~~~~~----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg 235 (737)
|.++|+++... ..|.-+...+|.|.=+|..|+.+.|..+.+.+....-...+....+++.++.+++.. ..++.+.
T Consensus 63 I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN 142 (251)
T COG0396 63 ILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN 142 (251)
T ss_pred EEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC
Confidence 99999998752 345556789999999999999999998876543221113456778999999999986 6666665
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhc--ceEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLL--DRLI 313 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~--D~v~ 313 (737)
. |+|||||||..|+..++.+|++.+||||-||||..+-..|-+.+.++.+.|.+++++||.. ++.++. |+|.
T Consensus 143 ~----GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vh 216 (251)
T COG0396 143 E----GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVH 216 (251)
T ss_pred C----CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEE
Confidence 3 8999999999999999999999999999999999999999999999999999999999994 578877 9999
Q ss_pred EecCCEEEeeCChhhHHHHHhhcCCCC
Q 036088 314 FLSNGQAVCSEAPSNLSQFFGAFGHRI 340 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~~~f~~~g~~~ 340 (737)
+|.+|+|+.+|.+ ++..+++.-|+.|
T Consensus 217 vl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 217 VLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred EEECCEEEecCCH-HHHHHHHHhchHH
Confidence 9999999999999 8888888777643
No 300
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=364.04 Aligned_cols=220 Identities=28% Similarity=0.415 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++|+... +.+.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|
T Consensus 4 ~l~~~nl~~~y~~~~----------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i 65 (648)
T PRK10535 4 LLELKDIRRSYPSGE----------------EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT--SGTY 65 (648)
T ss_pred EEEEeeEEEEeCCCC----------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEE
Confidence 799999999996321 1256999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCccc-------ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 162 TLNGEVLGSKL-------LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 162 ~~~G~~~~~~~-------~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
.+||+++.... .++.++|++|+..+++++|+.||+.+..... .....+.++++.++++.+||.+..|+.+
T Consensus 66 ~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 142 (648)
T PRK10535 66 RVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP 142 (648)
T ss_pred EECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc
Confidence 99999976421 1456899999999999999999999865432 2334556678999999999987766554
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++. ..+.||++++
T Consensus 143 -----~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~ 215 (648)
T PRK10535 143 -----SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIE 215 (648)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999999877999999999976 3467999999
Q ss_pred ecCCEEEeeCChhhH
Q 036088 315 LSNGQAVCSEAPSNL 329 (737)
Q Consensus 315 L~~G~iv~~G~~~~~ 329 (737)
|++|++++.|++++.
T Consensus 216 l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 216 IRDGEIVRNPPAQEK 230 (648)
T ss_pred EECCEEEeecCcccc
Confidence 999999999987654
No 301
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.2e-38 Score=343.75 Aligned_cols=217 Identities=26% Similarity=0.415 Sum_probs=195.3
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..++++++++.|+ ...+++|||+++++||+.||+|.||||||||+++|.|.+.|+ +|+
T Consensus 3 ~~l~~~~itK~f~--------------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~--~Ge 60 (501)
T COG3845 3 PALEMRGITKRFP--------------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD--SGE 60 (501)
T ss_pred ceEEEeccEEEcC--------------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC--cce
Confidence 4689999999997 356999999999999999999999999999999999999865 999
Q ss_pred EEECCEeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 161 VTLNGEVLGSK----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 161 I~~~G~~~~~~----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
|.++|+++.-. ..+..||+|+|+..|++++||.|||.++..-.....+..++.+++++++.+++||.-..|.+|++
T Consensus 61 I~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~d 140 (501)
T COG3845 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD 140 (501)
T ss_pred EEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeec
Confidence 99999998532 34556899999999999999999999987643223456777889999999999999878777774
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
||-||||||.|-++|..+|++|||||||+-|-|....++++.|++++++|+|||++||... ++.+.|||+.+|.
T Consensus 141 -----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR 214 (501)
T COG3845 141 -----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLR 214 (501)
T ss_pred -----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999986 6999999999999
Q ss_pred CCEEEeeCC
Q 036088 317 NGQAVCSEA 325 (737)
Q Consensus 317 ~G~iv~~G~ 325 (737)
+|+++..-+
T Consensus 215 ~Gkvvgt~~ 223 (501)
T COG3845 215 RGKVVGTVD 223 (501)
T ss_pred CCeEEeeec
Confidence 999876555
No 302
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.9e-38 Score=362.04 Aligned_cols=205 Identities=23% Similarity=0.407 Sum_probs=174.2
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc----cccceEEEEecCC---CCCCC
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK----LLKIISAYVMQDD---LLYSM 189 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~----~~~~~~~yV~Q~~---~l~~~ 189 (737)
+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++... ..++.+|||+|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~--~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT--SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 699999999999999999999999999999999998754 89999999987532 2345689999995 57888
Q ss_pred CCHHHHHHHhhhhcCC---CCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 036088 190 LTIEETLMFSAEFRLP---RSLSKEKKRKRVDALIDQLGLR-SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFL 265 (737)
Q Consensus 190 lTV~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illL 265 (737)
+||.||+.+....... ......+.+++++++++.+||. +..++.++ .|||||||||+|||+|+.+|++|||
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875321100 0122334456789999999995 55655554 6999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhH
Q 036088 266 DEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 266 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|+++..|+++++
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999888999999999986 58899999999999999998887665
No 303
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.7e-38 Score=324.11 Aligned_cols=196 Identities=29% Similarity=0.446 Sum_probs=164.1
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCC--CCCHHHHHHHhh
Q 036088 123 GVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYS--MLTIEETLMFSA 200 (737)
Q Consensus 123 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~--~lTV~e~l~~~~ 200 (737)
|++++||+++|+||||||||||+++|+|+.++. +|+|.++|+++.. .++.++|++|++.++. .+||.||+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA--KGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 468899999999999999999999999998754 8999999998642 3556899999987643 479999998763
Q ss_pred hhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 036088 201 EFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFN 279 (737)
Q Consensus 201 ~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~ 279 (737)
..... ........+++++++++.+|+.+..++.++ .||||||||++|||+|+.+|++|+|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 001122344678999999999876665554 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhH
Q 036088 280 VVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 280 i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
+.+.|++++++|+|+|++||++. ++.+.||+++++ +|++++.|+++++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 99999999877999999999986 588899999999 8999999988765
No 304
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=362.51 Aligned_cols=206 Identities=20% Similarity=0.368 Sum_probs=174.5
Q ss_pred cceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc----cccceEEEEecCC---CCCC
Q 036088 116 LLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK----LLKIISAYVMQDD---LLYS 188 (737)
Q Consensus 116 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~----~~~~~~~yV~Q~~---~l~~ 188 (737)
.+++|+|+++++||+++|+||||||||||+|+|+|+.++. +|+|.++|+++... ..++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT--AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC--CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 3899999999999999999999999999999999998744 89999999987531 2345689999986 4888
Q ss_pred CCCHHHHHHHhhhhcC-CCC--CcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 036088 189 MLTIEETLMFSAEFRL-PRS--LSKEKKRKRVDALIDQLGLR-SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLF 264 (737)
Q Consensus 189 ~lTV~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~ill 264 (737)
.+||.||+.++..... ... ......+++++++++.+|+. +..++.++ .|||||||||+||++|+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEE
Confidence 8999999987542211 001 12233346789999999994 56666655 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhH
Q 036088 265 LDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 265 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
|||||+|||+.+...+++.|++++++|.|||++|||+. .+.++||++++|++|++++.|+++++
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999988999999999986 58899999999999999999887654
No 305
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.1e-38 Score=315.30 Aligned_cols=176 Identities=35% Similarity=0.551 Sum_probs=151.5
Q ss_pred EEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEE
Q 036088 84 SFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTL 163 (737)
Q Consensus 84 ~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~ 163 (737)
+++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.+
T Consensus 1 ~~~~l~~~~~--------------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~--~G~v~~ 58 (180)
T cd03214 1 EVENLSVGYG--------------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS--SGEILL 58 (180)
T ss_pred CeeEEEEEEC--------------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEE
Confidence 4689999885 245999999999999999999999999999999999998754 899999
Q ss_pred CCEeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 164 NGEVLGSK---LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 164 ~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
+|+++... ..++.++|++| +++.+|+.+..++. ++
T Consensus 59 ~g~~~~~~~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~ 96 (180)
T cd03214 59 DGKDLASLSPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FN 96 (180)
T ss_pred CCEECCcCCHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cc
Confidence 99987531 23345677777 66677776555443 44
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|+++|++. .+.++||++++|++|+
T Consensus 97 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~ 175 (180)
T cd03214 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGR 175 (180)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999876 899999999986 4778999999999999
Q ss_pred EEeeC
Q 036088 320 AVCSE 324 (737)
Q Consensus 320 iv~~G 324 (737)
+++.|
T Consensus 176 i~~~~ 180 (180)
T cd03214 176 IVAQG 180 (180)
T ss_pred EEecC
Confidence 98654
No 306
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.8e-38 Score=402.21 Aligned_cols=216 Identities=20% Similarity=0.259 Sum_probs=184.4
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+|+||+++|+.+ .+.+|+||||+|++||.+||+|+||||||||+++|.|++++. +|+
T Consensus 1283 g~I~f~nVsf~Y~~~------------------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~--~G~ 1342 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED------------------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA--EGE 1342 (1522)
T ss_pred CcEEEEEEEEEeCCC------------------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC--CCe
Confidence 369999999999742 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-------cccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-------RSAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~ 230 (737)
|.+||.|+.. ..+|+.++|||||+.+|++ ||+|||.... ..++ +.+.+.++..++ ++..
T Consensus 1343 I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GL 1411 (1522)
T TIGR00957 1343 IIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKL 1411 (1522)
T ss_pred EEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCC
Confidence 9999999865 4578889999999999998 9999996321 1222 224444555444 3457
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
|+.+|+ .+..||||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|||+++|+++. ...+|
T Consensus 1412 dt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~D 1487 (1522)
T TIGR00957 1412 DHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYT 1487 (1522)
T ss_pred CceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCC
Confidence 888874 556799999999999999999999999999999999999999999999875 48999999999864 67799
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++|++++.|+++++.+
T Consensus 1488 rIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1488 RVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999864
No 307
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8e-38 Score=317.04 Aligned_cols=196 Identities=29% Similarity=0.524 Sum_probs=154.9
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++||++.|+... ...+.+|+|+|++|++||+++|+||||||||||+++|+|+.++. +|+|.
T Consensus 1 l~~~~l~~~~~~~~---------------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~--~G~i~ 63 (204)
T cd03250 1 ISVEDASFTWDSGE---------------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL--SGSVS 63 (204)
T ss_pred CEEeEEEEecCCCC---------------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC--CCeEE
Confidence 46899999986310 00136999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-------cccccc
Q 036088 163 LNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA-------AMTIIG 235 (737)
Q Consensus 163 ~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg 235 (737)
++| .++|++|++.+++ .||+||+.+.... .. +...+.++.+++.+. .++.+.
T Consensus 64 ~~g----------~i~~~~q~~~l~~-~t~~enl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 122 (204)
T cd03250 64 VPG----------SIAYVSQEPWIQN-GTIRENILFGKPF------DE----ERYEKVIKACALEPDLEILPDGDLTEIG 122 (204)
T ss_pred EcC----------EEEEEecCchhcc-CcHHHHhccCCCc------CH----HHHHHHHHHcCcHHHHHhccCcccceec
Confidence 999 4899999999885 5999999885321 11 112233333333221 122232
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVK-VLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
.....||||||||++|||+|+.+|++++|||||+|||+.+...+.+ +++++.++|+|||+++|++.. +.. +|++++
T Consensus 123 -~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~-~~~-~d~i~~ 199 (204)
T cd03250 123 -EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPH-ADQIVV 199 (204)
T ss_pred -CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH-Hhh-CCEEEE
Confidence 3456799999999999999999999999999999999999999998 567776668999999999863 555 999999
Q ss_pred ecCCE
Q 036088 315 LSNGQ 319 (737)
Q Consensus 315 L~~G~ 319 (737)
|++|+
T Consensus 200 l~~G~ 204 (204)
T cd03250 200 LDNGR 204 (204)
T ss_pred EeCCC
Confidence 99885
No 308
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.5e-38 Score=359.25 Aligned_cols=205 Identities=20% Similarity=0.308 Sum_probs=171.6
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCccc----ccceEEEEecCC---CCCCC
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKL----LKIISAYVMQDD---LLYSM 189 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yV~Q~~---~l~~~ 189 (737)
+|+|+||++++||+++|+|||||||||||++|+|+.+|. +|+|.++|+++.... .++.++||+|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR--GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 589999999999999999999999999999999998754 899999999875321 234689999984 48888
Q ss_pred CCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 036088 190 LTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEP 268 (737)
Q Consensus 190 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEP 268 (737)
+||.||+.................+++++++++.+||. +..++.++ .|||||||||+||++|+.+|+|||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999996431111110011223346789999999997 56665554 6999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhH
Q 036088 269 ISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 269 TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
|+|||+.+...+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|.++++
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999888999999999986 58899999999999999998877654
No 309
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.5e-38 Score=400.07 Aligned_cols=216 Identities=20% Similarity=0.293 Sum_probs=185.3
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+|+||+++|+.+ .+.+|+||||+|++||.+||+|+||||||||+++|.|++++. +|+
T Consensus 1307 G~I~f~nVsf~Y~~~------------------~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~--~G~ 1366 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG------------------LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC--GGE 1366 (1560)
T ss_pred CeEEEEEEEEEeCCC------------------CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcE
Confidence 369999999999632 245999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-------ccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-------SAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~ 230 (737)
|++||.++.. ..+|+.++||||++.+|+. ||+|||.... ..++ +.+.+.++..|+. +..
T Consensus 1367 I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gl 1435 (1560)
T PTZ00243 1367 IRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGI 1435 (1560)
T ss_pred EEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccc
Confidence 9999999864 4578889999999999997 9999996421 1222 3455566665553 456
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHD-PILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~-p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 309 (737)
|+.+|+ .+..||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....|
T Consensus 1436 dt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~ 1511 (1560)
T PTZ00243 1436 DSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQY 1511 (1560)
T ss_pred cccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhC
Confidence 888874 5667999999999999999996 89999999999999999999999999864 4799999999985 46789
Q ss_pred ceEEEecCCEEEeeCChhhHHH
Q 036088 310 DRLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~~~~~ 331 (737)
|+|++|++|++++.|+++++.+
T Consensus 1512 DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1512 DKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999853
No 310
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=8.9e-38 Score=338.56 Aligned_cols=187 Identities=26% Similarity=0.430 Sum_probs=164.0
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHH
Q 036088 133 ILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKE 211 (737)
Q Consensus 133 I~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~ 211 (737)
|+|||||||||||++|+|+.++. +|+|.++|+++... ..++.++||+|++.+++++||+||+.|+...+ ..++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~--~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC--ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 68999999999999999998754 89999999988542 23566899999999999999999999986532 23444
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 036088 212 KKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS- 290 (737)
Q Consensus 212 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~- 290 (737)
+.+++++++++.+||.+..++.+ ..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 55678999999999987776554 469999999999999999999999999999999999999999999999765
Q ss_pred CcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 291 GSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 291 g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
|+|+|++||++. ++.++||++++|++|+++..|+++++.
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 899999999986 588999999999999999999998774
No 311
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-37 Score=313.01 Aligned_cols=193 Identities=25% Similarity=0.286 Sum_probs=161.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++|+ .+.+++ +||++++||+++|+||||||||||+++|+|+.++. +|+|
T Consensus 1 ~l~~~~l~~~~~--------------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i 57 (195)
T PRK13541 1 MLSLHQLQFNIE--------------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS--SGNI 57 (195)
T ss_pred CeEEEEeeEEEC--------------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CcEE
Confidence 478999999995 133555 99999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
.++|.++.... ++.++|++|++.+++.+||+||+.+..... . ..++++++++.+++.+..++.+ +.
T Consensus 58 ~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~-----~~ 123 (195)
T PRK13541 58 YYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKC-----YS 123 (195)
T ss_pred EECCcccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccCh-----hh
Confidence 99999875422 345799999988878899999998865322 0 2346788899999987665544 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++..++|+|+|+++|++.. .+.+|.+.
T Consensus 124 LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 124 LSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhheec
Confidence 99999999999999999999999999999999999999999998877778999999999863 45576553
No 312
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.7e-37 Score=317.86 Aligned_cols=201 Identities=25% Similarity=0.402 Sum_probs=160.4
Q ss_pred EEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEE
Q 036088 84 SFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTL 163 (737)
Q Consensus 84 ~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~ 163 (737)
.+.|+.+.|+. .+.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.+
T Consensus 2 ~~~~~~~~~~~-------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~ 60 (218)
T cd03290 2 QVTNGYFSWGS-------------------GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL--EGKVHW 60 (218)
T ss_pred eeeeeEEecCC-------------------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCeEEE
Confidence 46788888752 246999999999999999999999999999999999998754 899999
Q ss_pred CCEeCCcc-------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccc-----
Q 036088 164 NGEVLGSK-------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM----- 231 (737)
Q Consensus 164 ~G~~~~~~-------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----- 231 (737)
+|+++... ..++.++|++|++.+++ .|++||+.+.... .. +...++++.+++.+..+
T Consensus 61 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~ 129 (218)
T cd03290 61 SNKNESEPSFEATRSRNRYSVAYAAQKPWLLN-ATVEENITFGSPF------NK----QRYKAVTDACSLQPDIDLLPFG 129 (218)
T ss_pred CCcccccccccccchhhcceEEEEcCCCcccc-ccHHHHHhhcCcC------CH----HHHHHHHHHhCcHHHHHhCcCc
Confidence 99876431 13456899999998885 6999999875321 11 12344556666543322
Q ss_pred --ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCcEEEEEecCCcHHHHh
Q 036088 232 --TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVK--VLKQIAKSGSIVIMSIHQPSHRILS 307 (737)
Q Consensus 232 --~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~--~L~~l~~~g~tvi~~~H~~~~~i~~ 307 (737)
+.. +..+..||||||||++|||+|+.+|++|||||||+|||+.+...+++ .++.+.+.|.|+|++||++.. + .
T Consensus 130 ~~~~~-~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~ 206 (218)
T cd03290 130 DQTEI-GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-P 206 (218)
T ss_pred cccCc-ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-h
Confidence 222 23456799999999999999999999999999999999999999998 667776668999999999864 4 5
Q ss_pred hcceEEEecCCE
Q 036088 308 LLDRLIFLSNGQ 319 (737)
Q Consensus 308 ~~D~v~lL~~G~ 319 (737)
.+|++++|++|.
T Consensus 207 ~~d~i~~l~~G~ 218 (218)
T cd03290 207 HADWIIAMKDGS 218 (218)
T ss_pred hCCEEEEecCCC
Confidence 799999999874
No 313
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-37 Score=361.12 Aligned_cols=203 Identities=20% Similarity=0.302 Sum_probs=173.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++|++|+|+. ++++|+|+|+++++||.+||+||||||||||+++|+|+++|. +|+|
T Consensus 322 ~i~~~~v~f~y~~-------------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~--~G~i 380 (547)
T PRK10522 322 TLELRNVTFAYQD-------------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ--SGEI 380 (547)
T ss_pred eEEEEEEEEEeCC-------------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEE
Confidence 6999999999962 235999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC-
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE- 237 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~- 237 (737)
.+||+++.. ..+++.++||+|++.+|+. |++|| . . ...++.+++.++.+++....+. ++.
T Consensus 381 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~---~-------~~~~~~~~~~~~~~~l~~~~~~--~~~~ 444 (547)
T PRK10522 381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G---K-------PANPALVEKWLERLKMAHKLEL--EDGR 444 (547)
T ss_pred EECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c---C-------chHHHHHHHHHHHcCCchhhhc--cccC
Confidence 999999864 3467789999999999986 88887 1 0 1234567889999998764432 221
Q ss_pred -CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 238 -QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 238 -~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
.+..||||||||++|||||+++|++|+||||||+||+.++..+.+.|.+..+ .++|+|+++|+++ ..+.||++++|
T Consensus 445 ~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l 522 (547)
T PRK10522 445 ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEM 522 (547)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEE
Confidence 2457999999999999999999999999999999999999999999987654 5899999999974 57899999999
Q ss_pred cCCEEEee
Q 036088 316 SNGQAVCS 323 (737)
Q Consensus 316 ~~G~iv~~ 323 (737)
++|+++..
T Consensus 523 ~~G~i~e~ 530 (547)
T PRK10522 523 RNGQLSEL 530 (547)
T ss_pred ECCEEEEe
Confidence 99999865
No 314
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.1e-37 Score=303.28 Aligned_cols=158 Identities=28% Similarity=0.448 Sum_probs=143.0
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|+ .+++|+++|+++++||+++|+||||||||||+++|+|+.++. +|+|.
T Consensus 1 l~~~~l~~~~~--------------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v~ 58 (163)
T cd03216 1 LELRGITKRFG--------------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD--SGEIL 58 (163)
T ss_pred CEEEEEEEEEC--------------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEE
Confidence 47899999995 245999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 163 LNGEVLGSK----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 163 ~~G~~~~~~----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
++|+++... ..++.++|++|
T Consensus 59 ~~g~~~~~~~~~~~~~~~i~~~~q-------------------------------------------------------- 82 (163)
T cd03216 59 VDGKEVSFASPRDARRAGIAMVYQ-------------------------------------------------------- 82 (163)
T ss_pred ECCEECCcCCHHHHHhcCeEEEEe--------------------------------------------------------
Confidence 999987542 23456889888
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+.||++++|++|
T Consensus 83 ---LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g 158 (163)
T cd03216 83 ---LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDG 158 (163)
T ss_pred ---cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999877999999999975 477899999999999
Q ss_pred EEEe
Q 036088 319 QAVC 322 (737)
Q Consensus 319 ~iv~ 322 (737)
++++
T Consensus 159 ~i~~ 162 (163)
T cd03216 159 RVVG 162 (163)
T ss_pred EEEe
Confidence 9875
No 315
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-38 Score=336.80 Aligned_cols=226 Identities=24% Similarity=0.381 Sum_probs=197.3
Q ss_pred CCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 036088 79 YPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLK 158 (737)
Q Consensus 79 ~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~ 158 (737)
.+..+.|+|++|.|.. .+++|+++||++++|+.+||+||||+||||++++|.+++++. +
T Consensus 259 ~~g~v~F~~V~F~y~~-------------------~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~--s 317 (497)
T COG5265 259 RLGAVAFINVSFAYDP-------------------RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--S 317 (497)
T ss_pred ccceEEEEEEEeeccc-------------------cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc--C
Confidence 3446999999999974 478999999999999999999999999999999999998855 9
Q ss_pred eEEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 159 GTVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 159 G~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
|.|.+||+++.. ...|+-+|.||||..||.+ |+..|+.|+..-....++..+.+.+.+.++++.+ ++..|+.||
T Consensus 318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~l--P~gy~t~Vg 394 (497)
T COG5265 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL--PEGYDTGVG 394 (497)
T ss_pred ceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhC--chhhhcccc
Confidence 999999999854 4678889999999999987 9999999986544333333444556777788766 677899999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
+.+. .|||||||||+|||+++++|+||+|||.||+||..++++|...|++++ .|+|.+++.|+.+. .--+|.|++|
T Consensus 395 ergl-klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst--i~~adeiivl 470 (497)
T COG5265 395 ERGL-KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST--IIDADEIIVL 470 (497)
T ss_pred hhee-eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh--ccCCceEEEe
Confidence 6544 499999999999999999999999999999999999999999999997 48999999999875 5679999999
Q ss_pred cCCEEEeeCChhhHHHH
Q 036088 316 SNGQAVCSEAPSNLSQF 332 (737)
Q Consensus 316 ~~G~iv~~G~~~~~~~~ 332 (737)
++|+|++.|+++++...
T Consensus 471 ~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 471 DNGRIVERGTHEELLAA 487 (497)
T ss_pred eCCEEEecCcHHHHHHc
Confidence 99999999999998754
No 316
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-37 Score=306.85 Aligned_cols=168 Identities=37% Similarity=0.572 Sum_probs=148.4
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|+.. ...+|+|+||++++|++++|+||||||||||+++|+|+.++. +|+|.
T Consensus 1 l~~~~l~~~~~~~------------------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~--~G~i~ 60 (171)
T cd03228 1 IEFKNVSFSYPGR------------------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT--SGEIL 60 (171)
T ss_pred CEEEEEEEEcCCC------------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CCEEE
Confidence 4688999988521 135999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 163 LNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 163 ~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
++|+++.. ...++.++|++|++.+++ .|+.||+
T Consensus 61 ~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l------------------------------------------- 96 (171)
T cd03228 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI------------------------------------------- 96 (171)
T ss_pred ECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-------------------------------------------
Confidence 99998753 234566899999998887 5999887
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++||++.. +.. ||++++|++|+
T Consensus 97 --LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 --LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred --hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 899999999999999999999999999999999999999999999964 7999999999864 555 99999999885
No 317
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-38 Score=299.43 Aligned_cols=194 Identities=27% Similarity=0.446 Sum_probs=170.9
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCc---ccccceEEEEecCCCCCCCC
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS---KLLKIISAYVMQDDLLYSML 190 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~l 190 (737)
...+|+++||++++||..+|.||||||||||+|+++.+..|+ +|++++.|++++. ..+|..++||.|.+.||+.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~--~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~- 91 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT--SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD- 91 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC--CceEEEcCccccccChHHHHHHHHHHHcCcccccc-
Confidence 467999999999999999999999999999999999998755 8999999999864 4688899999999999998
Q ss_pred CHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 036088 191 TIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPIS 270 (737)
Q Consensus 191 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTs 270 (737)
||++|+.|..+.|.... ..+...++|+++++.+..- +..+..||||||||++|+|.|..-|+||+||||||
T Consensus 92 tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L----~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 92 TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSIL----TKNITELSGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhh----cchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence 99999999887764322 3456788999999975431 23345799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-HcCcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 271 GLDSTSAFNVVKVLKQIA-KSGSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 271 gLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
+||+.+++.|-+.|.++. .+.+.++.+||++. +..+.||+++-+..|++
T Consensus 163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred hcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 999999999999999986 56889999999987 47899999999999875
No 318
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.4e-36 Score=322.43 Aligned_cols=204 Identities=25% Similarity=0.389 Sum_probs=164.4
Q ss_pred CCCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 036088 78 NYPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRL 157 (737)
Q Consensus 78 ~~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~ 157 (737)
..+..|+++|+++. . +.+|+|+||++++||+++|+||||||||||+++|+|++++.
T Consensus 35 ~~~~~l~i~nls~~-~---------------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~-- 90 (282)
T cd03291 35 SDDNNLFFSNLCLV-G---------------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS-- 90 (282)
T ss_pred CCCCeEEEEEEEEe-c---------------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--
Confidence 34557999999984 1 34999999999999999999999999999999999998754
Q ss_pred ceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-------c
Q 036088 158 KGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA-------A 230 (737)
Q Consensus 158 ~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~ 230 (737)
+|+|.++|. ++|++|++.+++. ||+||+.+.... .. .++.+.++.+++.+. .
T Consensus 91 ~G~I~i~g~----------i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~ 149 (282)
T cd03291 91 EGKIKHSGR----------ISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKD 149 (282)
T ss_pred CcEEEECCE----------EEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccc
Confidence 899999982 7999999988885 999999875321 11 112233333343322 2
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCcEEEEEecCCcHHHHhhc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVL-KQIAKSGSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~ 309 (737)
++.++ ..+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.+ ++++ ++.|||+++|++.. + ..|
T Consensus 150 ~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~ 225 (282)
T cd03291 150 NTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKA 225 (282)
T ss_pred cceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhC
Confidence 23332 245679999999999999999999999999999999999999999865 5554 47899999999864 4 689
Q ss_pred ceEEEecCCEEEeeCChhhHH
Q 036088 310 DRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~~~~ 330 (737)
|++++|++|++++.|+++++.
T Consensus 226 d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 226 DKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CEEEEEECCEEEEECCHHHHH
Confidence 999999999999999988764
No 319
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.8e-37 Score=389.06 Aligned_cols=215 Identities=21% Similarity=0.294 Sum_probs=185.8
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+|+||+++|+.. .+.+|+||||+|++||.+||+|+||||||||+++|.|+++ .+|+
T Consensus 1216 g~I~f~nVs~~Y~~~------------------~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~ 1274 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEA------------------GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGE 1274 (1490)
T ss_pred CeEEEEEEEEEeCCC------------------CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcE
Confidence 479999999999742 3569999999999999999999999999999999999985 3899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-------ccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-------SAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~ 230 (737)
|++||.++.. ..+|+.++||||++.+|++ ||||||.... ..+ ++.+.++++..+|. +..
T Consensus 1275 I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GL 1343 (1490)
T TIGR01271 1275 IQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKL 1343 (1490)
T ss_pred EEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCcccc
Confidence 9999999864 3578889999999999997 9999995421 122 34566677776663 356
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
|+.||+ .+..||||||||++|||||+++|+||+||||||+||..+...|.+.|++.. +++|||+++|+++ ....||
T Consensus 1344 dt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~D 1419 (1490)
T TIGR01271 1344 DFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQ 1419 (1490)
T ss_pred cccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCC
Confidence 888874 566799999999999999999999999999999999999999999999875 4799999999986 456799
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++|++++.|+++++.+
T Consensus 1420 rIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1420 QFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred EEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999998853
No 320
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.2e-37 Score=356.46 Aligned_cols=211 Identities=18% Similarity=0.260 Sum_probs=174.3
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+|+|+..+ ...+++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+
T Consensus 336 ~~i~~~~v~f~y~~~~---------------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~--~G~ 398 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE---------------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ--EGE 398 (555)
T ss_pred ceEEEEEEEEEeCCCC---------------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcE
Confidence 4699999999996321 01246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc-cC
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII-GD 236 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-g~ 236 (737)
|.+||.++.. ..+++.++||+|++.+|++ |+++|+. + ...++++++.++.+++.+..+... |-
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhccccccc
Confidence 9999999864 3466778999999999987 8888841 1 123456788899999876543322 21
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLK-QIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
+....||||||||++|||+|+++|+||+|||||++||+.++..+.+.+. .+..+|+|+|+++|+++ ..+.||+|++|
T Consensus 466 ~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l 543 (555)
T TIGR01194 466 STTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKL 543 (555)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEE
Confidence 2235799999999999999999999999999999999999999998764 45556899999999985 46899999999
Q ss_pred cCCEEEee
Q 036088 316 SNGQAVCS 323 (737)
Q Consensus 316 ~~G~iv~~ 323 (737)
++|+++..
T Consensus 544 ~~G~i~~~ 551 (555)
T TIGR01194 544 AAGCIVKD 551 (555)
T ss_pred ECCEEEEe
Confidence 99999853
No 321
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=6.6e-37 Score=300.58 Aligned_cols=163 Identities=30% Similarity=0.450 Sum_probs=143.7
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|++++|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.
T Consensus 1 i~~~~~~~~~~~-------------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~ 59 (166)
T cd03223 1 IELENLSLATPD-------------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG--SGRIG 59 (166)
T ss_pred CEEEEEEEEcCC-------------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEE
Confidence 468999998852 245999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 036088 163 LNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGV 242 (737)
Q Consensus 163 ~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 242 (737)
++|. +.++|++|++.++ ..||+||+.+. ....|
T Consensus 60 ~~~~--------~~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~L 92 (166)
T cd03223 60 MPEG--------EDLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVL 92 (166)
T ss_pred ECCC--------ceEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCC
Confidence 9874 4689999998776 46999998752 12369
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 243 SGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 243 SGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||++. ..+.||++++|++|
T Consensus 93 S~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 999999999999999999999999999999999999999999986 589999999975 35799999999875
No 322
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-37 Score=353.42 Aligned_cols=210 Identities=23% Similarity=0.355 Sum_probs=174.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++|+ .+++|+|+||+|++||+++|+||||||||||||+|+|++++. +|+|
T Consensus 1 ml~i~~ls~~~~--------------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i 58 (530)
T PRK15064 1 MLSTANITMQFG--------------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS--AGNV 58 (530)
T ss_pred CEEEEEEEEEeC--------------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceE
Confidence 478999999995 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhh-hc-----------CCC---C--------------CcHHH
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAE-FR-----------LPR---S--------------LSKEK 212 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~-~~-----------~~~---~--------------~~~~~ 212 (737)
.++|. ..++|++|++.+++.+||+|++.++.. .. .+. . ....+
T Consensus 59 ~~~~~--------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (530)
T PRK15064 59 SLDPN--------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYT 130 (530)
T ss_pred EecCC--------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchh
Confidence 99873 347999999999999999999987531 00 000 0 00012
Q ss_pred HHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 036088 213 KRKRVDALIDQLGLRSAA-MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSG 291 (737)
Q Consensus 213 ~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g 291 (737)
.+++++++++.+||.+.. +.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|
T Consensus 131 ~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~ 202 (530)
T PRK15064 131 AEARAGELLLGVGIPEEQHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RN 202 (530)
T ss_pred HHHHHHHHHHhCCCChhHhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CC
Confidence 346788999999997533 233 346999999999999999999999999999999999999999999863 58
Q ss_pred cEEEEEecCCcHHHHhhcceEEEecCCEE-EeeCChhhHH
Q 036088 292 SIVIMSIHQPSHRILSLLDRLIFLSNGQA-VCSEAPSNLS 330 (737)
Q Consensus 292 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~i-v~~G~~~~~~ 330 (737)
.|||+++|++. .+.++||++++|++|++ ++.|++++..
T Consensus 203 ~tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 203 STMIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred CeEEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 99999999986 57889999999999999 5889887664
No 323
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.7e-37 Score=389.80 Aligned_cols=214 Identities=25% Similarity=0.398 Sum_probs=174.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+|+|+.+ ..+++|+|+||+|++||++||+||||||||||+++|+|+++|. +|+|
T Consensus 382 ~I~~~nVsf~Y~~~-----------------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I 442 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR-----------------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT--EGDI 442 (1466)
T ss_pred cEEEEEEEEEcCCC-----------------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC--CCeE
Confidence 69999999999732 1246999999999999999999999999999999999998754 8999
Q ss_pred EE-CCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcC----------C-----C----------------
Q 036088 162 TL-NGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRL----------P-----R---------------- 206 (737)
Q Consensus 162 ~~-~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~----------~-----~---------------- 206 (737)
++ +|.++.. ..+|+.+|||+|++.+|+. ||+|||.++..... + .
T Consensus 443 ~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1466)
T PTZ00265 443 IINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGD 521 (1466)
T ss_pred EEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccch
Confidence 99 5677643 3467789999999999986 99999999742100 0 0
Q ss_pred --------CCc---------HHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 036088 207 --------SLS---------KEKKRKRVDALIDQLGLR-------SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPIL 262 (737)
Q Consensus 207 --------~~~---------~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~i 262 (737)
... ....++.+.++++.+++. +..||.+|. .+..||||||||++|||||+++|+|
T Consensus 522 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~I 600 (1466)
T PTZ00265 522 LNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKI 600 (1466)
T ss_pred hhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 000 001234566676666554 445788874 4667999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 263 LFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 263 llLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
||||||||+||+.++..|.+.|+++.+ +|+|+|+++|+++. .+.||+|++|++|
T Consensus 601 LlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~g 655 (1466)
T PTZ00265 601 LILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSNR 655 (1466)
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeCC
Confidence 999999999999999999999999976 58999999999864 4799999999986
No 324
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-37 Score=350.33 Aligned_cols=217 Identities=25% Similarity=0.424 Sum_probs=176.8
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||++.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+
T Consensus 249 ~~i~~~~l~~~~----------------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~ 304 (491)
T PRK10982 249 VILEVRNLTSLR----------------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS--AGT 304 (491)
T ss_pred cEEEEeCccccc----------------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC--ccE
Confidence 478999988752 24899999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCccc----ccceEEEEecCC---CCCCCCCHHHHHHHhh--hhcCCCC-CcHHHHHHHHHHHHHHcCCc-cc
Q 036088 161 VTLNGEVLGSKL----LKIISAYVMQDD---LLYSMLTIEETLMFSA--EFRLPRS-LSKEKKRKRVDALIDQLGLR-SA 229 (737)
Q Consensus 161 I~~~G~~~~~~~----~~~~~~yV~Q~~---~l~~~lTV~e~l~~~~--~~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~ 229 (737)
|.++|+++.... .++.++|++|+. .+++++|+.+|..+.. ....... ......+++++++++.+++. +.
T Consensus 305 i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 384 (491)
T PRK10982 305 ITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPG 384 (491)
T ss_pred EEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCC
Confidence 999999885321 244589999985 4788899887743221 0000001 12233456788999999995 34
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhc
Q 036088 230 AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 230 ~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 309 (737)
.++.+ ..|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. ++.++|
T Consensus 385 ~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~ 458 (491)
T PRK10982 385 HRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGIT 458 (491)
T ss_pred ccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhC
Confidence 55544 469999999999999999999999999999999999999999999999888999999999986 588999
Q ss_pred ceEEEecCCEEEeeCChh
Q 036088 310 DRLIFLSNGQAVCSEAPS 327 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~ 327 (737)
|++++|++|+++..++.+
T Consensus 459 d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 459 DRILVMSNGLVAGIVDTK 476 (491)
T ss_pred CEEEEEECCEEEEEEccc
Confidence 999999999999766553
No 325
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.7e-36 Score=351.33 Aligned_cols=210 Identities=23% Similarity=0.300 Sum_probs=174.4
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+. .+.+|+|+||+|++|++++|+|||||||||||++|+|++++. +|+
T Consensus 5 ~~l~i~~l~~~y~~-------------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~--~G~ 63 (556)
T PRK11819 5 YIYTMNRVSKVVPP-------------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF--EGE 63 (556)
T ss_pred EEEEEeeEEEEeCC-------------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--Cce
Confidence 48999999999951 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhh-c------------CCCC---Cc---------------
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEF-R------------LPRS---LS--------------- 209 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~-~------------~~~~---~~--------------- 209 (737)
|.+++. ..+|||+|++.+++.+||.||+.++... . .... ..
T Consensus 64 i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (556)
T PRK11819 64 ARPAPG--------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDA 135 (556)
T ss_pred EEecCC--------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHh
Confidence 999752 3589999999999999999999875320 0 0000 00
Q ss_pred --HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 036088 210 --KEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQI 287 (737)
Q Consensus 210 --~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l 287 (737)
..+..++++++++.+||.. .+..+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++
T Consensus 136 ~~~~~~~~~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~ 209 (556)
T PRK11819 136 ADAWDLDSQLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY 209 (556)
T ss_pred cCccchHHHHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC
Confidence 0012457888999999953 45544 469999999999999999999999999999999999999999999987
Q ss_pred HHcCcEEEEEecCCcHHHHhhcceEEEecCCEEE-eeCChhhH
Q 036088 288 AKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAV-CSEAPSNL 329 (737)
Q Consensus 288 ~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~ 329 (737)
. .|||++||++. .+.+.||+|++|++|+++ +.|+.++.
T Consensus 210 ~---~tviiisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 210 P---GTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred C---CeEEEEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 3 59999999986 578899999999999986 78887764
No 326
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.1e-37 Score=297.76 Aligned_cols=221 Identities=24% Similarity=0.424 Sum_probs=191.9
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+++++ ...+|+++||++.+||+-+|+|||||||||+|++|+|..+|. +|+
T Consensus 4 ~iL~~~~vsVsF~--------------------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~--~G~ 61 (249)
T COG4674 4 IILYLDGVSVSFG--------------------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ--EGE 61 (249)
T ss_pred ceEEEeceEEEEc--------------------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC--cce
Confidence 5799999999996 356999999999999999999999999999999999997654 899
Q ss_pred EEECC-EeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCC-----CCcHHHHHHHHHHHHHHcCCcccc
Q 036088 161 VTLNG-EVLGSK----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPR-----SLSKEKKRKRVDALIDQLGLRSAA 230 (737)
Q Consensus 161 I~~~G-~~~~~~----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~ 230 (737)
++++| .+++.. ..|.-+|--||.|..|..+||+|||.++.....+- .....+.+.+++++|+..||.+.+
T Consensus 62 v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~ 141 (249)
T COG4674 62 VLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER 141 (249)
T ss_pred EEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh
Confidence 99999 777542 23445788999999999999999999986432110 011234567999999999999988
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
+...+ .||-||||++.|++-++.+|++|+||||++|+-.....+.-++|+.++. +++|+++-||+. .+.+++|
T Consensus 142 ~~~A~-----~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~ 214 (249)
T COG4674 142 DRLAA-----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIAD 214 (249)
T ss_pred hhhhh-----hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhh
Confidence 77665 5999999999999999999999999999999999999999999999986 689999999986 5899999
Q ss_pred eEEEecCCEEEeeCChhhHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~ 330 (737)
+|.+|++|.+.+.|+.+++.
T Consensus 215 ~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 215 KVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred eeEEEeccceeecccHHHhh
Confidence 99999999999999988774
No 327
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8.3e-37 Score=349.25 Aligned_cols=217 Identities=24% Similarity=0.321 Sum_probs=174.1
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
..+|+++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.++ +.+|
T Consensus 258 ~~~l~~~~l~~~~~--------------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G 316 (490)
T PRK10938 258 EPRIVLNNGVVSYN--------------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSN 316 (490)
T ss_pred CceEEEeceEEEEC--------------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCC
Confidence 34799999999995 24599999999999999999999999999999999998642 2489
Q ss_pred EEEECCEeCCcc----cccceEEEEecCCCCCC--CCCHHHHHHHhhhh--cCCCCCcHHHHHHHHHHHHHHcCCcc-cc
Q 036088 160 TVTLNGEVLGSK----LLKIISAYVMQDDLLYS--MLTIEETLMFSAEF--RLPRSLSKEKKRKRVDALIDQLGLRS-AA 230 (737)
Q Consensus 160 ~I~~~G~~~~~~----~~~~~~~yV~Q~~~l~~--~lTV~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~ 230 (737)
+|.++|+++... ..++.++|++|++.++. ..|+++++.++... ....... ...+++++++++.+||.+ ..
T Consensus 317 ~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~ 395 (490)
T PRK10938 317 DLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTA 395 (490)
T ss_pred eEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhc
Confidence 999999875321 23456899999876543 35777776544211 0101111 233567899999999986 66
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCc-EEEEEecCCcHHHHh-h
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGS-IVIMSIHQPSHRILS-L 308 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H~~~~~i~~-~ 308 (737)
++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|. |||++||++. ++.+ +
T Consensus 396 ~~~~~-----~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~ 469 (490)
T PRK10938 396 DAPFH-----SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACI 469 (490)
T ss_pred cCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhh
Confidence 55544 6999999999999999999999999999999999999999999999987764 6999999986 4666 5
Q ss_pred cceEEEecCCEEEeeC
Q 036088 309 LDRLIFLSNGQAVCSE 324 (737)
Q Consensus 309 ~D~v~lL~~G~iv~~G 324 (737)
+|++++|++|++++.-
T Consensus 470 ~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 470 THRLEFVPDGDIYRYV 485 (490)
T ss_pred heeEEEecCCceEEee
Confidence 8999999999988653
No 328
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.2e-36 Score=310.75 Aligned_cols=195 Identities=19% Similarity=0.217 Sum_probs=160.8
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE-ECCEeCCcccccceEEEEecCCCCCCCCCHHHH
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT-LNGEVLGSKLLKIISAYVMQDDLLYSMLTIEET 195 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~-~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~ 195 (737)
+|+||||+|++||+++|+||||||||||+|+|+|+.++. +|+|. ++|..+. +.|++.+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--sG~i~~~~~~~~~----------~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD--EGDFIGLRGDALP----------LGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC--CCCEEEecCceec----------cccccccCCcCcHHHH
Confidence 799999999999999999999999999999999998754 89997 7775431 2346678899999999
Q ss_pred HHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 036088 196 LMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDST 275 (737)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~ 275 (737)
+.+..... .....+. .+.+.+.++|+...++.++ .||||||||++||++|+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 99876533 1222222 2334455677776666654 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHHHHHhhc
Q 036088 276 SAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLSQFFGAF 336 (737)
Q Consensus 276 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~ 336 (737)
++..+.+.|.+..+ ++|+|+++|++. .+.++||++++|++|++++.|+.+++.++++.+
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQY 197 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHH
Confidence 99999998866544 468999999986 477899999999999999999999988776643
No 329
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-37 Score=307.37 Aligned_cols=219 Identities=26% Similarity=0.385 Sum_probs=186.4
Q ss_pred CCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 036088 79 YPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLK 158 (737)
Q Consensus 79 ~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~ 158 (737)
.+..|+++|+++.|. +|+||+|+|++|++||..+|+|||||||||||++++|..+|. +
T Consensus 28 ~~~li~l~~v~v~r~--------------------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--s 85 (257)
T COG1119 28 NEPLIELKNVSVRRN--------------------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--S 85 (257)
T ss_pred CcceEEecceEEEEC--------------------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--C
Confidence 345799999999996 478999999999999999999999999999999999998755 8
Q ss_pred eEEEECCEeCCc----ccccceEEEEecC--CCCCCCCCHHHHHHHhh--hhcCCCCCcHHHHHHHHHHHHHHcCCcccc
Q 036088 159 GTVTLNGEVLGS----KLLKIISAYVMQD--DLLYSMLTIEETLMFSA--EFRLPRSLSKEKKRKRVDALIDQLGLRSAA 230 (737)
Q Consensus 159 G~I~~~G~~~~~----~~~~~~~~yV~Q~--~~l~~~lTV~e~l~~~~--~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 230 (737)
|.+.+.|+.... ...|+.+|+|.-. ..+.+..+|+|-+.-+. ..-.......++..+++..+++.+|+.+.+
T Consensus 86 g~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la 165 (257)
T COG1119 86 GDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165 (257)
T ss_pred CceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhc
Confidence 999999998754 3568889999654 34556678888775332 111111123456678899999999999988
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CcEEEEEecCCcHHHHhh
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS--GSIVIMSIHQPSHRILSL 308 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~ 308 (737)
|...+ .||-||||||-|||||+++|++||||||++|||...+..+++.|.+++.. +.++|+|||++. ++-..
T Consensus 166 ~r~~~-----~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~ 239 (257)
T COG1119 166 DRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPC 239 (257)
T ss_pred cCchh-----hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccc
Confidence 87776 59999999999999999999999999999999999999999999999865 788999999986 68999
Q ss_pred cceEEEecCCEEEeeCC
Q 036088 309 LDRLIFLSNGQAVCSEA 325 (737)
Q Consensus 309 ~D~v~lL~~G~iv~~G~ 325 (737)
++++++|++|+++++|.
T Consensus 240 ~th~lll~~g~v~~~g~ 256 (257)
T COG1119 240 FTHRLLLKEGEVVAQGK 256 (257)
T ss_pred cceEEEeeCCceeeccc
Confidence 99999999999999874
No 330
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.4e-36 Score=312.95 Aligned_cols=189 Identities=24% Similarity=0.299 Sum_probs=155.4
Q ss_pred ceeeeeEEEe-----cCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCC
Q 036088 117 LLDDISGVAS-----EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLT 191 (737)
Q Consensus 117 iL~~vs~~i~-----~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lT 191 (737)
.++|++++++ +||+++|+|||||||||||++|+|++++. +|+|.++|+ .++|++|+...+..+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~--~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD--EGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CCeEEECCc---------eEEEecccccCCCCCC
Confidence 5667777665 79999999999999999999999998754 899999985 4799999987777789
Q ss_pred HHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 036088 192 IEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISG 271 (737)
Q Consensus 192 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsg 271 (737)
|+|++.+...... . .....+++++.+||.+..++.++ .|||||||||+||++|+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432110 0 12346789999999876665544 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEEE--eeCChhhH
Q 036088 272 LDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQAV--CSEAPSNL 329 (737)
Q Consensus 272 LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv--~~G~~~~~ 329 (737)
||+.++..+.+.|++++++ |+|||++||++. .+..+||++++|+++..+ ..+++.++
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 9999999999999999764 899999999976 577899999999764333 33444443
No 331
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=347.23 Aligned_cols=203 Identities=23% Similarity=0.322 Sum_probs=172.7
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+ .+.+|+|+||+|++||+++|+|||||||||||++|+|+.+|. +|+
T Consensus 318 ~~l~~~~l~~~~~--------------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~--~G~ 375 (530)
T PRK15064 318 NALEVENLTKGFD--------------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD--SGT 375 (530)
T ss_pred ceEEEEeeEEeeC--------------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeE
Confidence 4799999999995 245999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcccccceEEEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCC
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDDL--LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAMTIIGDE 237 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~ 237 (737)
|.++|+ +.+|||+|++. +++.+||+|++.+... . ...+++++++++.+|+. +..+..+
T Consensus 376 i~~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~-----~~~~~~~~~~l~~~~l~~~~~~~~~--- 436 (530)
T PRK15064 376 VKWSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ---E-----GDDEQAVRGTLGRLLFSQDDIKKSV--- 436 (530)
T ss_pred EEECCc--------eEEEEEcccccccCCCCCcHHHHHHHhcc---C-----CccHHHHHHHHHHcCCChhHhcCcc---
Confidence 999874 35899999863 5667899999864210 1 11235688999999994 4555554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
..||||||||++||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++||++. .+.++||++++|++
T Consensus 437 --~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~ 510 (530)
T PRK15064 437 --KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP 510 (530)
T ss_pred --cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999887 359999999986 57889999999999
Q ss_pred CEEE-eeCChhhHH
Q 036088 318 GQAV-CSEAPSNLS 330 (737)
Q Consensus 318 G~iv-~~G~~~~~~ 330 (737)
|+++ +.|+++++.
T Consensus 511 g~i~~~~g~~~~~~ 524 (530)
T PRK15064 511 DGVVDFSGTYEEYL 524 (530)
T ss_pred CeEEEcCCCHHHHH
Confidence 9998 888877654
No 332
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.3e-36 Score=347.83 Aligned_cols=212 Identities=23% Similarity=0.287 Sum_probs=172.8
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+. .+++|+|+||+|++|++++|+|||||||||||++|+|+.+|. +|+
T Consensus 3 ~~i~~~nls~~~~~-------------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~--~G~ 61 (552)
T TIGR03719 3 YIYTMNRVSKVVPP-------------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF--NGE 61 (552)
T ss_pred EEEEEeeEEEecCC-------------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--Cce
Confidence 37999999999951 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhh-c------------CCCCCcHH----------------
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEF-R------------LPRSLSKE---------------- 211 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~-~------------~~~~~~~~---------------- 211 (737)
|.+++. ..+|||+|++.+++.+||+||+.++... + ........
T Consensus 62 i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (552)
T TIGR03719 62 ARPAPG--------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDA 133 (552)
T ss_pred EEecCC--------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHh
Confidence 999752 3589999999999999999999875321 0 00000000
Q ss_pred ----HHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 036088 212 ----KKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQI 287 (737)
Q Consensus 212 ----~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l 287 (737)
....+++++++.+|+.. .+.. +..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++
T Consensus 134 ~~~~~~~~~~~~~l~~~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~ 207 (552)
T TIGR03719 134 ADAWDLDRKLEIAMDALRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY 207 (552)
T ss_pred cCcchhHHHHHHHHhhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC
Confidence 01245677888888853 4444 4469999999999999999999999999999999999999999999876
Q ss_pred HHcCcEEEEEecCCcHHHHhhcceEEEecCCEEE-eeCChhhHHH
Q 036088 288 AKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAV-CSEAPSNLSQ 331 (737)
Q Consensus 288 ~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~~ 331 (737)
+.|||++||++. .+..+||++++|++|+++ +.|+.++..+
T Consensus 208 ---~~tvIiisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 208 ---PGTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred ---CCeEEEEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 359999999986 578899999999999976 7788776543
No 333
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.8e-37 Score=308.18 Aligned_cols=241 Identities=27% Similarity=0.369 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEecCcccCCCCC--ccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLP--FVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~--~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
++.++||++.|.....- +.+. .......+.....+++||||+|++|++++++|||||||||+||+|+|++.|. +|
T Consensus 3 ~i~~~~l~k~~~~~~k~-pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~--~G 79 (325)
T COG4586 3 MIMVENLSKNYPVAIKE-PGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT--SG 79 (325)
T ss_pred eeEecccccccceeeeC-chhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC--CC
Confidence 57788888887643210 0000 0001111222345899999999999999999999999999999999998855 89
Q ss_pred EEEECCEeCCc--ccccceEEEEe-cCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 160 TVTLNGEVLGS--KLLKIISAYVM-QDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 160 ~I~~~G~~~~~--~~~~~~~~yV~-Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
.|.++|.+.-. ..+-+.+++|+ |.-.+.-.+.+.|.+....... +++.++-+++.+.+.+.|+|+...+..
T Consensus 80 ~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~--- 153 (325)
T COG4586 80 KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP--- 153 (325)
T ss_pred eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh---
Confidence 99999997633 23334456664 4466777778888887754443 577888899999999999998777544
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
.|.||-|||.|+.||.+|+++|+||||||||-|||..++..|.+.|++..+ .+.||+.+||+.+ .+.++||||++|
T Consensus 154 --vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I 230 (325)
T COG4586 154 --VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLI 230 (325)
T ss_pred --hhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEe
Confidence 567999999999999999999999999999999999999999999999976 4899999999987 599999999999
Q ss_pred cCCEEEeeCChhhHHHHHh
Q 036088 316 SNGQAVCSEAPSNLSQFFG 334 (737)
Q Consensus 316 ~~G~iv~~G~~~~~~~~f~ 334 (737)
++|+++|+|+.+++.+-|.
T Consensus 231 ~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 231 DQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred eCCcEeecccHHHHHHHhC
Confidence 9999999999999877665
No 334
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-36 Score=305.67 Aligned_cols=195 Identities=27% Similarity=0.397 Sum_probs=168.0
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..++++||++.|+.+... .......+++||||+|++||.++|+|+||||||||-|+|.|+.+| ++|+
T Consensus 3 ~ll~v~~l~k~f~~~~~~-----------~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p--t~G~ 69 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGF-----------GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP--TSGE 69 (268)
T ss_pred ceEEEeccEEEEeccccc-----------CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC--CCce
Confidence 368999999999854210 111134799999999999999999999999999999999999875 4899
Q ss_pred EEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
|+++|+++.... +.+..+++.++|+.+||.... -+..+.
T Consensus 70 i~f~g~~i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~----~~ryPh 108 (268)
T COG4608 70 ILFEGKDITKLS-------------------------------------KEERRERVLELLEKVGLPEEF----LYRYPH 108 (268)
T ss_pred EEEcCcchhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHH----hhcCCc
Confidence 999999865322 345667899999999986522 145677
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
+||||||||++|||||+.+|+++++|||||.||...+.+|+++|+++.++ |.|.++++||.+ .+..++|||.+|..|+
T Consensus 109 elSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~ 187 (268)
T COG4608 109 ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGK 187 (268)
T ss_pred ccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCc
Confidence 89999999999999999999999999999999999999999999999875 999999999986 4888999999999999
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
+|+.|+.+++.
T Consensus 188 iVE~g~~~~~~ 198 (268)
T COG4608 188 IVEIGPTEEVF 198 (268)
T ss_pred eeEecCHHHHh
Confidence 99999998874
No 335
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.8e-36 Score=293.90 Aligned_cols=203 Identities=31% Similarity=0.447 Sum_probs=170.4
Q ss_pred ccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCccccc---ceEEEEecCC--CCC
Q 036088 113 KTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLK---IISAYVMQDD--LLY 187 (737)
Q Consensus 113 ~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yV~Q~~--~l~ 187 (737)
.++++|+++|++|..|+++-|+|.||||||||+|+|+|.+.++ +|+|.++|.+++..... ..++-|+||+ ..+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t--~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT--SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC--CceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 3688999999999999999999999999999999999998755 89999999999864332 3356799997 579
Q ss_pred CCCCHHHHHHHhhhhcCCCCCcH---HHHHHHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 036088 188 SMLTIEETLMFSAEFRLPRSLSK---EKKRKRVDALIDQL--GLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPIL 262 (737)
Q Consensus 188 ~~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~i 262 (737)
+.|||+||+.++...-..+++.. ..+++...+.++.+ ||++..++.+| -|||||||-++++.|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 99999999998764322223333 22334445555555 66777777777 4999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEEEee
Q 036088 263 LFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCS 323 (737)
Q Consensus 263 llLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 323 (737)
|+|||-|++|||.++..|++.-.++.++ +.|.+|+||.+. .+.++-+|+++|++|+||.+
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEE
Confidence 9999999999999999999999998654 789999999986 58899999999999999975
No 336
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.6e-35 Score=341.55 Aligned_cols=205 Identities=22% Similarity=0.325 Sum_probs=169.7
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
..+|+++||++.|+ .+.+|+||||+|++||+++|+||||||||||+++|+|+.+|. +|
T Consensus 322 ~~~l~~~~l~~~~~--------------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~--~G 379 (556)
T PRK11819 322 DKVIEAENLSKSFG--------------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD--SG 379 (556)
T ss_pred CeEEEEEeEEEEEC--------------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--Ce
Confidence 34799999999995 246999999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCcccccceEEEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCC
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQDD-LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-AAMTIIGDE 237 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~ 237 (737)
+|.+++. . .+|||+|+. .+++.+||.||+.+...... ... ....++++++.+|+.. ..+..+
T Consensus 380 ~i~~~~~-~-------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~--- 443 (556)
T PRK11819 380 TIKIGET-V-------KLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGN--REIPSRAYVGRFNFKGGDQQKKV--- 443 (556)
T ss_pred EEEECCc-e-------EEEEEeCchhhcCCCCCHHHHHHhhccccc---ccc--cHHHHHHHHHhCCCChhHhcCch---
Confidence 9999542 1 489999996 78889999999998653221 111 1223557899999963 345544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++. | |||++||++. .+.++||++++|++
T Consensus 444 --~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~ 517 (556)
T PRK11819 444 --GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEG 517 (556)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4699999999999999999999999999999999999999999999873 4 8999999986 58889999999986
Q ss_pred -CEEE-eeCChhh
Q 036088 318 -GQAV-CSEAPSN 328 (737)
Q Consensus 318 -G~iv-~~G~~~~ 328 (737)
|++. +.|+.++
T Consensus 518 ~g~~~~~~g~~~~ 530 (556)
T PRK11819 518 DSQVEWFEGNFQE 530 (556)
T ss_pred CCeEEEecCCHHH
Confidence 7776 5665543
No 337
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=310.77 Aligned_cols=227 Identities=27% Similarity=0.411 Sum_probs=196.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---Ccc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ---RLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~ 158 (737)
.|+++||++.+.... +...++++|||++++||.+||+|.||||||-..+.+.|+++.. ..+
T Consensus 6 lL~v~nLsV~f~~~~----------------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~s 69 (534)
T COG4172 6 LLSIRNLSVAFHQEG----------------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPS 69 (534)
T ss_pred ceeeeccEEEEecCC----------------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcc
Confidence 689999999997542 3578999999999999999999999999999999999999742 248
Q ss_pred eEEEECCEeCCc---cccc----ceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc
Q 036088 159 GTVTLNGEVLGS---KLLK----IISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA 229 (737)
Q Consensus 159 G~I~~~G~~~~~---~~~~----~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 229 (737)
|+|.++|+++-. ...+ ..++++||++ .|-|-.|+..-|.-..++. .++++++.++++.++|+.+|+.+-
T Consensus 70 g~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 70 GSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEP 147 (534)
T ss_pred ceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCch
Confidence 999999998732 2222 3579999997 5778779888887665543 356788889999999999999875
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhh
Q 036088 230 AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSL 308 (737)
Q Consensus 230 ~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 308 (737)
...+ +.++.+|||||||||.||.||+.+|++||.||||++||.....+|+++|++|.++ |..++++|||.. -+.++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHh
Confidence 5433 5678899999999999999999999999999999999999999999999999765 999999999987 48889
Q ss_pred cceEEEecCCEEEeeCChhhH
Q 036088 309 LDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 309 ~D~v~lL~~G~iv~~G~~~~~ 329 (737)
+|||.||.+|++++.|..+++
T Consensus 225 ADrV~VM~~G~ivE~~~t~~l 245 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETL 245 (534)
T ss_pred hhhEEEEeccEEeecCcHHHH
Confidence 999999999999999998776
No 338
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.8e-35 Score=341.23 Aligned_cols=199 Identities=26% Similarity=0.305 Sum_probs=170.7
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
+.+|+++|+++.|+. . .|+++||++++||+++|+||||||||||+++|+|+++|. +|
T Consensus 338 ~~~l~~~~ls~~~~~--------------------~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~--~G 394 (590)
T PRK13409 338 ETLVEYPDLTKKLGD--------------------F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD--EG 394 (590)
T ss_pred ceEEEEcceEEEECC--------------------E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ce
Confidence 457999999998851 2 489999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
+|.++ ..++|++|+..+++.+||+|++.+.... .. ....++++++.+||.+..++.++
T Consensus 395 ~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~---~~~~~~~~L~~l~l~~~~~~~~~---- 452 (590)
T PRK13409 395 EVDPE----------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG---SSYYKSEIIKPLQLERLLDKNVK---- 452 (590)
T ss_pred EEEEe----------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC---hHHHHHHHHHHCCCHHHHhCCcc----
Confidence 99986 1479999998888889999999875321 11 12357889999999877766554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+..+||++++|+ |
T Consensus 453 -~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~ 529 (590)
T PRK13409 453 -DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G 529 (590)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C
Confidence 69999999999999999999999999999999999999999999999874 899999999976 5788999999996 4
Q ss_pred EEEeeCCh
Q 036088 319 QAVCSEAP 326 (737)
Q Consensus 319 ~iv~~G~~ 326 (737)
++...|..
T Consensus 530 ~~~~~g~~ 537 (590)
T PRK13409 530 EPGKHGHA 537 (590)
T ss_pred cceeeeec
Confidence 77766653
No 339
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.3e-35 Score=373.38 Aligned_cols=207 Identities=28% Similarity=0.445 Sum_probs=172.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.++++|++|+|+.. .++++|+|+|+++++||.++|+||||||||||+++|+|.+++. +|.+
T Consensus 614 ~I~~~~vsF~y~~~-----------------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~--~G~i 674 (1495)
T PLN03232 614 AISIKNGYFSWDSK-----------------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA--ETSS 674 (1495)
T ss_pred cEEEEeeEEEcCCC-----------------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc--CCCE
Confidence 69999999999732 1356999999999999999999999999999999999998754 6765
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-------cccccccc
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-------RSAAMTII 234 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v 234 (737)
. ..++.++||+|++.+|+. ||+|||.|+.. .+ +++.+++++..+| ++..+|.|
T Consensus 675 ~---------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~I 734 (1495)
T PLN03232 675 V---------VIRGSVAYVPQVSWIFNA-TVRENILFGSD------FE----SERYWRAIDVTALQHDLDLLPGRDLTEI 734 (1495)
T ss_pred E---------EecCcEEEEcCccccccc-cHHHHhhcCCc------cC----HHHHHHHHHHhCCHHHHHhCCCCCCcee
Confidence 3 346678999999999987 99999999742 11 2344455555444 44567899
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKV-LKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
|+. +..||||||||++||||++++|+|++||||||+||+.++.++++. ++.+ .+++|+|++||+++ ....||+|+
T Consensus 735 Ge~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii 810 (1495)
T PLN03232 735 GER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRII 810 (1495)
T ss_pred cCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEE
Confidence 854 557999999999999999999999999999999999999998765 4544 35899999999985 478899999
Q ss_pred EecCCEEEeeCChhhHHH
Q 036088 314 FLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++++.|+.+++.+
T Consensus 811 ~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 811 LVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred EEeCCEEEEecCHHHHHh
Confidence 999999999999988754
No 340
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.5e-35 Score=339.31 Aligned_cols=203 Identities=24% Similarity=0.336 Sum_probs=168.5
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++|++++|+ ++.+|+|+|++|++|++++|+|||||||||||++|+|+.++. +|+
T Consensus 321 ~~l~~~~l~~~~~--------------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~G~ 378 (552)
T TIGR03719 321 KVIEAENLSKGFG--------------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD--SGT 378 (552)
T ss_pred eEEEEeeEEEEEC--------------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CeE
Confidence 4799999999995 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcccccceEEEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCC
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDD-LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-AAMTIIGDEQ 238 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 238 (737)
|.+++. + .+||++|+. .+++.+||.||+.++..... .... +.+++++++.+|+.. ..+..+
T Consensus 379 i~~~~~-~-------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~---- 441 (552)
T TIGR03719 379 IKIGET-V-------KLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV---- 441 (552)
T ss_pred EEECCc-e-------EEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch----
Confidence 999542 1 489999996 58888999999998653211 1111 224567899999964 345544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC-
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN- 317 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~- 317 (737)
..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++. + |||++||++. .+.++||++++|++
T Consensus 442 -~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~ 516 (552)
T TIGR03719 442 -GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGD 516 (552)
T ss_pred -hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999883 4 8999999976 57889999999986
Q ss_pred CEEE-eeCChh
Q 036088 318 GQAV-CSEAPS 327 (737)
Q Consensus 318 G~iv-~~G~~~ 327 (737)
|+++ +.|+.+
T Consensus 517 ~~~~~~~g~~~ 527 (552)
T TIGR03719 517 SHVEWFEGNYS 527 (552)
T ss_pred CeEEEeCCCHH
Confidence 5776 556553
No 341
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.7e-35 Score=309.89 Aligned_cols=191 Identities=26% Similarity=0.381 Sum_probs=159.2
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE-----------ECCEeCCcc--c-cc--ceEE
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT-----------LNGEVLGSK--L-LK--IISA 178 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~-----------~~G~~~~~~--~-~~--~~~~ 178 (737)
+.+|+|+| .+++||+++|+|||||||||||++|+|++++. +|+|. ++|+++... . .+ ..++
T Consensus 14 ~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~--~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 90 (255)
T cd03236 14 SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN--LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVI 90 (255)
T ss_pred chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC--CceEeeccccchhhhhccCchhhhhhHHhhhccccee
Confidence 35899999 59999999999999999999999999998754 89996 888877432 1 11 1368
Q ss_pred EEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 036088 179 YVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIH 258 (737)
Q Consensus 179 yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~ 258 (737)
|++|+..+++. ++.+++.+.. .....++.+.++++.+||.+..+..+ +.||||||||++||++|+.
T Consensus 91 ~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 91 VKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALAR 156 (255)
T ss_pred eecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHh
Confidence 99999888885 8888887642 12234567899999999987665544 4699999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeC
Q 036088 259 DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSE 324 (737)
Q Consensus 259 ~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 324 (737)
+|++++|||||+|||+.+...+.+.|++++++++|||+++|++. .+.++||++++|+ |++.+.|
T Consensus 157 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 157 DADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999887899999999975 4777899999994 6566544
No 342
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.1e-35 Score=372.63 Aligned_cols=206 Identities=26% Similarity=0.438 Sum_probs=173.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-eE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLK-GT 160 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~-G~ 160 (737)
.|+++|++|+|+.. .++++|+|+|+++++|++++|+||||||||||+++|+|.+++ .+ |+
T Consensus 614 ~I~~~nvsf~y~~~-----------------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~GG~ 674 (1622)
T PLN03130 614 AISIKNGYFSWDSK-----------------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP--RSDAS 674 (1622)
T ss_pred ceEEEeeEEEccCC-----------------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc--CCCce
Confidence 69999999999632 125699999999999999999999999999999999999874 48 89
Q ss_pred EEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-------cccccc
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-------SAAMTI 233 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ 233 (737)
|.+ +..++||+|++.+|+. ||+|||.|+... + +++.+++++..+|. +..+|.
T Consensus 675 I~l----------~~~Iayv~Q~p~Lfng-TIreNI~fg~~~------d----~e~y~~vl~a~~L~~di~~LP~Gd~T~ 733 (1622)
T PLN03130 675 VVI----------RGTVAYVPQVSWIFNA-TVRDNILFGSPF------D----PERYERAIDVTALQHDLDLLPGGDLTE 733 (1622)
T ss_pred EEE----------cCeEEEEcCccccCCC-CHHHHHhCCCcc------c----HHHHHHHHHHhCcHHHHHhCCCccccc
Confidence 975 4468999999999986 999999997431 1 33455555555543 446788
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVK-VLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
||+. +..||||||||++||||++++|+|++||||||+||++++..+++ .++.+. +|+|+|++||+++ ..+.+|+|
T Consensus 734 IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~I 809 (1622)
T PLN03130 734 IGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRI 809 (1622)
T ss_pred ccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEE
Confidence 9854 56799999999999999999999999999999999999998875 555553 5899999999985 57889999
Q ss_pred EEecCCEEEeeCChhhHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~ 331 (737)
++|++|++++.|+.+++.+
T Consensus 810 i~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 810 ILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred EEEeCCEEEEeCCHHHHHh
Confidence 9999999999999998753
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=339.33 Aligned_cols=204 Identities=22% Similarity=0.347 Sum_probs=171.2
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
..+|+++||++.|+ .+.+|+|+||+|++|++++|+|||||||||||++|+|..+|. +|
T Consensus 310 ~~~l~~~~l~~~y~--------------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~--~G 367 (638)
T PRK10636 310 NPLLKMEKVSAGYG--------------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV--SG 367 (638)
T ss_pred CceEEEEeeEEEeC--------------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CC
Confidence 34799999999995 246999999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCcccccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-cccccccC
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-AAMTIIGD 236 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~ 236 (737)
+|.+++. ..+||++|+. .+.+..||.+++.-. . ......+++++|+.+++.. ..++.++
T Consensus 368 ~i~~~~~--------~~igy~~Q~~~~~l~~~~~~~~~~~~~---~------~~~~~~~~~~~L~~~~l~~~~~~~~~~- 429 (638)
T PRK10636 368 EIGLAKG--------IKLGYFAQHQLEFLRADESPLQHLARL---A------PQELEQKLRDYLGGFGFQGDKVTEETR- 429 (638)
T ss_pred eEEECCC--------EEEEEecCcchhhCCccchHHHHHHHh---C------chhhHHHHHHHHHHcCCChhHhcCchh-
Confidence 9999742 2479999974 455667888876421 1 1123457889999999963 4555554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+. .+.++||++++|+
T Consensus 430 ----~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~ 501 (638)
T PRK10636 430 ----RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVH 501 (638)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEE
Confidence 69999999999999999999999999999999999999999999987 34 9999999975 5788999999999
Q ss_pred CCEEE-eeCChhhHHH
Q 036088 317 NGQAV-CSEAPSNLSQ 331 (737)
Q Consensus 317 ~G~iv-~~G~~~~~~~ 331 (737)
+|+++ +.|+.++..+
T Consensus 502 ~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 502 DGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCEEEEcCCCHHHHHH
Confidence 99997 8898887643
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.5e-34 Score=275.72 Aligned_cols=144 Identities=33% Similarity=0.504 Sum_probs=131.2
Q ss_pred EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE
Q 036088 83 LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT 162 (737)
Q Consensus 83 l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 162 (737)
|+++|+++.|.. +.+|+++||++++||+++|+||||||||||+++|+|+.++. +|+|.
T Consensus 1 l~~~~l~~~~~~--------------------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~ 58 (144)
T cd03221 1 IELENLSKTYGG--------------------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD--EGIVT 58 (144)
T ss_pred CEEEEEEEEECC--------------------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEE
Confidence 468899998852 35999999999999999999999999999999999998754 89999
Q ss_pred ECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 036088 163 LNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGV 242 (737)
Q Consensus 163 ~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 242 (737)
++|+ ..++|++| |
T Consensus 59 ~~~~--------~~i~~~~~-----------------------------------------------------------l 71 (144)
T cd03221 59 WGST--------VKIGYFEQ-----------------------------------------------------------L 71 (144)
T ss_pred ECCe--------EEEEEEcc-----------------------------------------------------------C
Confidence 9985 35789998 8
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 243 SGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 243 SGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
|+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|++. ++.+.+|++++|++|+
T Consensus 72 S~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999999987 479999999986 5778899999999985
No 345
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.6e-34 Score=340.15 Aligned_cols=200 Identities=18% Similarity=0.265 Sum_probs=163.4
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||++.|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+
T Consensus 450 ~~i~~~nv~~~~~~-------------------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~--~G~ 508 (659)
T TIGR00954 450 NGIKFENIPLVTPN-------------------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY--GGR 508 (659)
T ss_pred CeEEEEeeEEECCC-------------------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCe
Confidence 36999999998852 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc----C
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG----D 236 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~ 236 (737)
|.+++ ++.++||+|++.+++. |++||+.++....... .....+++++++++.+|+.+..++..| .
T Consensus 509 i~~~~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~ 577 (659)
T TIGR00954 509 LTKPA--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQ 577 (659)
T ss_pred EeecC--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCccccc
Confidence 98864 4568999999999987 9999998864321000 001123467889999999765543221 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.....||||||||++|||+|+++|++++|||||+|||+.++..+.+.+++ .|+|+|+++|+++ ..+.+|++++|+
T Consensus 578 ~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 578 DWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 12457999999999999999999999999999999999999999998876 3899999999986 368999999996
Q ss_pred C
Q 036088 317 N 317 (737)
Q Consensus 317 ~ 317 (737)
.
T Consensus 653 ~ 653 (659)
T TIGR00954 653 G 653 (659)
T ss_pred C
Confidence 4
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.8e-34 Score=336.35 Aligned_cols=206 Identities=23% Similarity=0.346 Sum_probs=170.7
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
..+|+++||++.|+ .+.+|+|+||+|++|++++|+|||||||||||++|+|+.+|. +|
T Consensus 317 ~~~l~~~~l~~~~~--------------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~--~G 374 (635)
T PRK11147 317 KIVFEMENVNYQID--------------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD--SG 374 (635)
T ss_pred CceEEEeeeEEEEC--------------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--Cc
Confidence 34799999999995 246999999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCcccccceEEEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCC
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQDD-LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAMTIIGDE 237 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~ 237 (737)
+|.+ |.++ .+||++|+. .+++.+||.||+.+..... ... ....++.++++.+++. +..++.++
T Consensus 375 ~i~~-~~~~-------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-- 439 (635)
T PRK11147 375 RIHC-GTKL-------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-- 439 (635)
T ss_pred EEEE-CCCc-------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhh--
Confidence 9998 5432 479999985 6889999999998754211 011 1234678899999995 44555554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec-
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS- 316 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~- 316 (737)
.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+.++||++++|+
T Consensus 440 ---~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~ 512 (635)
T PRK11147 440 ---ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEG 512 (635)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeC
Confidence 69999999999999999999999999999999999999999999876 459999999975 5788999999997
Q ss_pred CCEEEe-eCChhhH
Q 036088 317 NGQAVC-SEAPSNL 329 (737)
Q Consensus 317 ~G~iv~-~G~~~~~ 329 (737)
+|++.. .|+.++.
T Consensus 513 ~g~i~~~~g~y~~y 526 (635)
T PRK11147 513 NGKIGRYVGGYHDA 526 (635)
T ss_pred CCeEEEccCCHHHH
Confidence 798764 5665543
No 347
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.9e-34 Score=282.27 Aligned_cols=144 Identities=26% Similarity=0.460 Sum_probs=127.7
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
+.+++++ +++++||+++|+||||||||||+|+|+|++++. +|+|.++|++ ++|++|+..
T Consensus 13 ~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~---------i~~~~q~~~--------- 71 (177)
T cd03222 13 FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDGIT---------PVYKPQYID--------- 71 (177)
T ss_pred EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CcEEEECCEE---------EEEEcccCC---------
Confidence 5688885 899999999999999999999999999998754 8999999964 578888532
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDS 274 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~ 274 (737)
||||||||++|||+|+.+|++++|||||+|||+
T Consensus 72 -----------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~ 104 (177)
T cd03222 72 -----------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI 104 (177)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcC-cEEEEEecCCcHHHHhhcceEEEecCCEEEee--CChh
Q 036088 275 TSAFNVVKVLKQIAKSG-SIVIMSIHQPSHRILSLLDRLIFLSNGQAVCS--EAPS 327 (737)
Q Consensus 275 ~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~--G~~~ 327 (737)
.++..+.+.|+++++++ .|||+++|++. .+.++||++++|+++..++. |.|.
T Consensus 105 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 105 EQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 99999999999998765 89999999975 47779999999998766544 5554
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-34 Score=334.33 Aligned_cols=208 Identities=23% Similarity=0.342 Sum_probs=164.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|. .+.+|+||||+|++|+++||+||||||||||||+|+|..+|+ +|+|
T Consensus 1 ~i~i~nls~~~g--------------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd--~G~I 58 (638)
T PRK10636 1 MIVFSSLQIRRG--------------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD--GGSY 58 (638)
T ss_pred CEEEEEEEEEeC--------------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceE
Confidence 488999999996 356999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhh-----------------------hcC-CCCCcHHHHHHHH
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAE-----------------------FRL-PRSLSKEKKRKRV 217 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~-----------------------~~~-~~~~~~~~~~~~v 217 (737)
.++|.. .++|++|+...+. .|+.+.+.-... +.. .......+.+.++
T Consensus 59 ~~~~~~--------~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (638)
T PRK10636 59 TFPGNW--------QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRA 129 (638)
T ss_pred EecCCC--------EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHH
Confidence 998842 3688888653332 465554421100 000 0000011234678
Q ss_pred HHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEE
Q 036088 218 DALIDQLGLR-SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIM 296 (737)
Q Consensus 218 ~~~l~~lgL~-~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~ 296 (737)
+++++.+|+. +..+..++ .|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+
T Consensus 130 ~~~L~~lgl~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tvii 201 (638)
T PRK10636 130 ASLLHGLGFSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLIL 201 (638)
T ss_pred HHHHHhCCCCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEE
Confidence 9999999996 45666555 69999999999999999999999999999999999999999998875 569999
Q ss_pred EecCCcHHHHhhcceEEEecCCEEE-eeCChhhH
Q 036088 297 SIHQPSHRILSLLDRLIFLSNGQAV-CSEAPSNL 329 (737)
Q Consensus 297 ~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~ 329 (737)
||||.. .+.++||++++|++|+++ |.|+.+..
T Consensus 202 vsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 202 ISHDRD-FLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred EeCCHH-HHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 999976 578899999999999986 67766544
No 349
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.3e-33 Score=333.11 Aligned_cols=206 Identities=22% Similarity=0.334 Sum_probs=166.6
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||++.|+. .+.+|+|+||+|++|++++|+|||||||||||++|+|+++|. +|+
T Consensus 507 ~~L~~~~ls~~y~~-------------------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~--~G~ 565 (718)
T PLN03073 507 PIISFSDASFGYPG-------------------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS--SGT 565 (718)
T ss_pred ceEEEEeeEEEeCC-------------------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--Cce
Confidence 47999999999952 245999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-AAMTIIGDEQH 239 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~ 239 (737)
|.+++. ..+||++|+. ...+++.++..+......+ .. ..++++++++.+|+.. ..+.. +
T Consensus 566 I~~~~~--------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~~-----~ 625 (718)
T PLN03073 566 VFRSAK--------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQP-----M 625 (718)
T ss_pred EEECCc--------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcCC-----c
Confidence 998752 3589999975 3445676664432111111 11 1356789999999973 44444 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
..|||||||||+||++|+.+|++|||||||+|||+.+...+++.|++. .| |||++||++. .+.++||++++|++|+
T Consensus 626 ~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~ 701 (718)
T PLN03073 626 YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGK 701 (718)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCE
Confidence 579999999999999999999999999999999999999998888765 34 9999999976 5788999999999999
Q ss_pred EE-eeCChhhHHH
Q 036088 320 AV-CSEAPSNLSQ 331 (737)
Q Consensus 320 iv-~~G~~~~~~~ 331 (737)
++ +.|+.++..+
T Consensus 702 i~~~~g~~~~~~~ 714 (718)
T PLN03073 702 VTPFHGTFHDYKK 714 (718)
T ss_pred EEEeCCCHHHHHH
Confidence 98 7887766543
No 350
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=266.75 Aligned_cols=192 Identities=27% Similarity=0.415 Sum_probs=165.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CcceE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ-RLKGT 160 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~ 160 (737)
++.++||+...+ +.-+|-++|++|.+||++-|||||||||||||..+.|.+.+. ..+|+
T Consensus 2 ~l~l~nvsl~l~--------------------g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~ 61 (213)
T COG4136 2 MLCLKNVSLRLP--------------------GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61 (213)
T ss_pred ceeeeeeeecCC--------------------CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeE
Confidence 577889886554 356899999999999999999999999999999999998864 35899
Q ss_pred EEECCEeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 161 VTLNGEVLGS-KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 161 I~~~G~~~~~-~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
+.+|+++++. ...++.+|+.+||+.+||+++|.+||.|+. |..+.-..++..++..|++.||....+.. +
T Consensus 62 ~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P 132 (213)
T COG4136 62 LWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----P 132 (213)
T ss_pred EEECCeeccccchhhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----h
Confidence 9999999875 345678999999999999999999999874 34455557778899999999999877543 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCcEEEEEecCCc
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIA-KSGSIVIMSIHQPS 302 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~ 302 (737)
.+||||||-||++-|+|+..|+.++||||+|.||..-+.++.+..-.-. ..|.-+|.+|||..
T Consensus 133 ~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 133 ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred hhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 5799999999999999999999999999999999999999988776544 45889999999964
No 351
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-33 Score=284.13 Aligned_cols=235 Identities=22% Similarity=0.291 Sum_probs=195.6
Q ss_pred ceEEEEeEEEEEecCcccCCCCC--ccC--ccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLP--FVG--SQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR 156 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~--~~~--~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~ 156 (737)
..|+++||++.|+.......++. ... ..........+|+||||++++||.++|+|+||||||||||+|+|.++|+
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt- 80 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT- 80 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC-
Confidence 36889999999976431100100 000 1111445678999999999999999999999999999999999999865
Q ss_pred cceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 157 LKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 157 ~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
+|+|.++|+-...... .-.+-|.+|.+||+.+-..+- ++++++.+++++++++.-+|.+..|.+|.
T Consensus 81 -~G~v~v~G~v~~li~l---------g~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pvk- 146 (249)
T COG1134 81 -SGKVKVTGKVAPLIEL---------GAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVK- 146 (249)
T ss_pred -CceEEEcceEehhhhc---------ccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchh-
Confidence 8999999985322111 123456799999999877653 56788999999999999999999977764
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.+|.||+-|++.|.+...+|+|||+||-.+-.|+.-.++-.+.++++.++++|||+++|++. .+.++||++++|+
T Consensus 147 ----tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~ 221 (249)
T COG1134 147 ----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLE 221 (249)
T ss_pred ----hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEe
Confidence 69999999999999999999999999999999999999999999999888899999999986 5999999999999
Q ss_pred CCEEEeeCChhhHHHHHhh
Q 036088 317 NGQAVCSEAPSNLSQFFGA 335 (737)
Q Consensus 317 ~G~iv~~G~~~~~~~~f~~ 335 (737)
+|++.+.|+++++.+++..
T Consensus 222 ~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 222 HGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred CCEEEEcCCHHHHHHHHHH
Confidence 9999999999999887754
No 352
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.5e-34 Score=359.69 Aligned_cols=210 Identities=23% Similarity=0.378 Sum_probs=171.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.++++|+++.|+.. .+++|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|
T Consensus 636 ~i~~~~~~~~~~~~------------------~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~--~G~i 695 (1522)
T TIGR00957 636 SITVHNATFTWARD------------------LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV--EGHV 695 (1522)
T ss_pred cEEEEEeEEEcCCC------------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC--CcEE
Confidence 69999999999632 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHH--HHHHHHcCC-cccccccccCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRV--DALIDQLGL-RSAAMTIIGDEQ 238 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v--~~~l~~lgL-~~~~~~~vg~~~ 238 (737)
.++| .++||+|++.+++ .||+|||.|+... .++..++.+ .++.+.++. ++..+|.+|+ .
T Consensus 696 ~~~g----------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~------~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~ 757 (1522)
T TIGR00957 696 HMKG----------SVAYVPQQAWIQN-DSLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRTEIGE-K 757 (1522)
T ss_pred EECC----------EEEEEcCCccccC-CcHHHHhhcCCcc------CHHHHHHHHHHhCCHHHHHhcCCCCCceecC-C
Confidence 9997 3799999999886 5999999987431 111111111 112222322 3345677875 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--HcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIA--KSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~--~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
+..||||||||++||||++.+|+|++||||||+||+.++..+++.+.+.. .+++|+|++||++.. .+.||+|++|+
T Consensus 758 g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~ 835 (1522)
T TIGR00957 758 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMS 835 (1522)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEec
Confidence 66799999999999999999999999999999999999999999997542 357999999999863 56699999999
Q ss_pred CCEEEeeCChhhHHH
Q 036088 317 NGQAVCSEAPSNLSQ 331 (737)
Q Consensus 317 ~G~iv~~G~~~~~~~ 331 (737)
+|+++..|+++++.+
T Consensus 836 ~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 836 GGKISEMGSYQELLQ 850 (1522)
T ss_pred CCeEEeeCCHHHHHh
Confidence 999999999988753
No 353
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.4e-34 Score=346.21 Aligned_cols=225 Identities=27% Similarity=0.430 Sum_probs=204.2
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..+..+|+++.|+.. .+ +++++|+.+++||+.+++|||||||||++|+|.|..+++ +|+
T Consensus 563 ~~~~~~~L~k~y~~~------------------~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t--~G~ 621 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK------------------DG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT--SGE 621 (885)
T ss_pred ceEEEcceeeeecch------------------hh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC--cce
Confidence 367888999988632 12 999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 161 VTLNGEVLGSK----LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 161 I~~~G~~~~~~----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
++++|.++... ..++.+||+||+|.+++.+|.||++.+.++++ ++++.+.++.++.+++.+||.+.+++.++
T Consensus 622 a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~- 697 (885)
T KOG0059|consen 622 ALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR- 697 (885)
T ss_pred EEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-
Confidence 99999998642 25677899999999999999999999999887 56677777889999999999999988876
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.+|||+|||+++|.||+.+|++++|||||+|+||.+++.++++++++.++|+.||+|||..+ +...+|||+.+|.
T Consensus 698 ----~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv 772 (885)
T KOG0059|consen 698 ----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMV 772 (885)
T ss_pred ----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheee
Confidence 59999999999999999999999999999999999999999999999988889999999975 6899999999999
Q ss_pred CCEEEeeCChhhHHHHHhh
Q 036088 317 NGQAVCSEAPSNLSQFFGA 335 (737)
Q Consensus 317 ~G~iv~~G~~~~~~~~f~~ 335 (737)
+|++.+.|+++++...|+.
T Consensus 773 ~G~l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 773 IGQLRCIGSPQELKSRYGS 791 (885)
T ss_pred cCeeEEecChHHHHhhcCC
Confidence 9999999999999988764
No 354
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.4e-33 Score=278.81 Aligned_cols=159 Identities=23% Similarity=0.304 Sum_probs=132.7
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
.+++|+|+||++++|++++|+||||||||||||+|.+ .+|+|.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~--~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPK--FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcccc--cccccEEEEhH-----------
Confidence 4679999999999999999999999999999999963 2799999887321 12334678777
Q ss_pred HHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC--CcEEEEeCCCC
Q 036088 194 ETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA-AMTIIGDEQHRGVSGGERRRVSIGVDIIHD--PILLFLDEPIS 270 (737)
Q Consensus 194 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~--p~illLDEPTs 270 (737)
.++++.++|... .+. .++.||||||||++||++|+.+ |+++||||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 246777888642 433 3457999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEe
Q 036088 271 GLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVC 322 (737)
Q Consensus 271 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 322 (737)
|||+.++..+.+.|++++++|+|||++||++.. .+.||++++|.+|+..+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~--~~~~d~i~~l~~g~~~~ 168 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV--LSSADWIIDFGPGSGKS 168 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEECCCCCCC
Confidence 999999999999999998779999999999863 47899999997655433
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.2e-33 Score=328.56 Aligned_cols=206 Identities=24% Similarity=0.339 Sum_probs=162.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ .+.+|+||||+|++|++++|+|||||||||||++|+|+.+++ +|+|
T Consensus 3 ~l~i~~ls~~~~--------------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~--~G~I 60 (635)
T PRK11147 3 LISIHGAWLSFS--------------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD--DGRI 60 (635)
T ss_pred EEEEeeEEEEeC--------------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CeEE
Confidence 689999999995 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHh------------------------------hhhc--CCCCCc
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFS------------------------------AEFR--LPRSLS 209 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~------------------------------~~~~--~~~~~~ 209 (737)
.++|.. .++|++|++......+|.+++..+ ..+. .. ...
T Consensus 61 ~~~~~~--------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 131 (635)
T PRK11147 61 IYEQDL--------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHN 131 (635)
T ss_pred EeCCCC--------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcC
Confidence 998732 246777764333334566554211 0000 00 000
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 036088 210 KEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK 289 (737)
Q Consensus 210 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~ 289 (737)
....+.+++++++.+|+.. +.. +..|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++.
T Consensus 132 ~~~~~~~~~~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~- 203 (635)
T PRK11147 132 LWQLENRINEVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ- 203 (635)
T ss_pred cccHHHHHHHHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-
Confidence 0123457889999999962 444 44699999999999999999999999999999999999999999999873
Q ss_pred cCcEEEEEecCCcHHHHhhcceEEEecCCEEE-eeCChhhH
Q 036088 290 SGSIVIMSIHQPSHRILSLLDRLIFLSNGQAV-CSEAPSNL 329 (737)
Q Consensus 290 ~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~ 329 (737)
.|||++||++. .+.+.||+|++|++|+++ +.|+.++.
T Consensus 204 --~tvlivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 204 --GSIIFISHDRS-FIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred --CEEEEEeCCHH-HHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 59999999976 478899999999999997 56877654
No 356
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.2e-33 Score=268.19 Aligned_cols=229 Identities=24% Similarity=0.353 Sum_probs=192.9
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||++++....+.++ +....+++.|||++++|+.+||+|.||||||||.|+|+|.++|+ +|+|
T Consensus 4 LLeV~nLsKtF~~~~~lf~-----------r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT--sG~i 70 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFR-----------RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGEI 70 (267)
T ss_pred hhhhhhhhhhhhhhhhhhh-----------hhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC--CceE
Confidence 5789999998875543221 22456899999999999999999999999999999999998854 9999
Q ss_pred EECCEeCCccc---ccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 162 TLNGEVLGSKL---LKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 162 ~~~G~~~~~~~---~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
.+||+++.... ..+++-+++||+ .+-|.+.+.+-|.... ++..++...++.+++-+.|+.+||-+... +
T Consensus 71 l~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdha----n 144 (267)
T COG4167 71 LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHA----N 144 (267)
T ss_pred EECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCcccc----c
Confidence 99999985432 235678999997 4677788888777654 44456778889999999999999954321 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEe
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
-.+..||-||||||++||||+.+|+|++.||...+||...+.++.++..+|.++ |.+-|.++.+.. -+..++|+|+||
T Consensus 145 ~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM 223 (267)
T COG4167 145 YYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVM 223 (267)
T ss_pred cchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEE
Confidence 345679999999999999999999999999999999999999999999999865 999999998876 488899999999
Q ss_pred cCCEEEeeCChhhHH
Q 036088 316 SNGQAVCSEAPSNLS 330 (737)
Q Consensus 316 ~~G~iv~~G~~~~~~ 330 (737)
++|++++.|++.++.
T Consensus 224 ~EG~vvE~G~t~~v~ 238 (267)
T COG4167 224 HEGEVVERGSTADVL 238 (267)
T ss_pred ecCceeecCChhhhh
Confidence 999999999998874
No 357
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-33 Score=268.99 Aligned_cols=153 Identities=37% Similarity=0.618 Sum_probs=136.8
Q ss_pred EEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEEC
Q 036088 85 FNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLN 164 (737)
Q Consensus 85 ~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~ 164 (737)
++|+++.|+ .+.+|+++|+++++|++++|+||||||||||+++|+|.+++ .+|+|+++
T Consensus 2 ~~~~~~~~~--------------------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~ 59 (157)
T cd00267 2 IENLSFRYG--------------------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILID 59 (157)
T ss_pred eEEEEEEeC--------------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEEC
Confidence 678888885 23599999999999999999999999999999999999875 48999999
Q ss_pred CEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 165 GEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 165 G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
|.++.. ...++.++|++|
T Consensus 60 ~~~~~~~~~~~~~~~i~~~~q----------------------------------------------------------- 80 (157)
T cd00267 60 GKDIAKLPLEELRRRIGYVPQ----------------------------------------------------------- 80 (157)
T ss_pred CEEcccCCHHHHHhceEEEee-----------------------------------------------------------
Confidence 998753 234456889988
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
|||||+||++||++++.+|++++|||||+|||..++..+.+.|+++.+.++|+|+++|++. .+...||++++|++|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999999999999999999877899999999976 4677889999999875
No 358
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-33 Score=270.33 Aligned_cols=177 Identities=27% Similarity=0.381 Sum_probs=157.3
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc--cccceEEEEecCCCCCCCCC
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK--LLKIISAYVMQDDLLYSMLT 191 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yV~Q~~~l~~~lT 191 (737)
++.++.++||++.+||.+-|.|||||||||||++|+|+..|. +|+|.++|.++... .+++.+-|+--++.+-+.||
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~--~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLT 91 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD--AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELT 91 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC--CCeEEecCCCCccchhhHHHHHHHhhccccccchhh
Confidence 467999999999999999999999999999999999999865 89999999988643 24455678888889999999
Q ss_pred HHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 036088 192 IEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISG 271 (737)
Q Consensus 192 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsg 271 (737)
|.|||.|-.++... .....+.+.++.+||....|.+++ .||-||||||+|||-+++.++++||||||++
T Consensus 92 a~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~ta 160 (209)
T COG4133 92 ALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTA 160 (209)
T ss_pred HHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCcccc
Confidence 99999998765421 123568899999999999988877 5999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCcEEEEEecCCcH
Q 036088 272 LDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSH 303 (737)
Q Consensus 272 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 303 (737)
||......+-..+..-+.+|-.||.+||||..
T Consensus 161 LDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 161 LDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999999999999988889999999999864
No 359
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-30 Score=316.32 Aligned_cols=209 Identities=28% Similarity=0.478 Sum_probs=178.8
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
...++++|.+++.+.. ...+.|+|||++|++|+++||+||-|||||+||.+|.|-++ ..+|
T Consensus 516 ~~~i~i~~~sfsW~~~-----------------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG 576 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE-----------------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSG 576 (1381)
T ss_pred CceEEEeeeeEecCCC-----------------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccc
Confidence 3469999999997642 12448999999999999999999999999999999999987 4599
Q ss_pred EEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-------cccc
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-------AAMT 232 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~ 232 (737)
+|.++|. ++||+|++.++.. ||||||.|+..+ .+++.+++++...|.+ .-.|
T Consensus 577 ~v~v~gs----------iaYv~Q~pWI~ng-TvreNILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~T 635 (1381)
T KOG0054|consen 577 SVAVNGS----------VAYVPQQPWIQNG-TVRENILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLT 635 (1381)
T ss_pred eEEEcCe----------EEEeccccHhhCC-cHHHhhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcc
Confidence 9999987 6999999999997 999999998643 2456677777776654 3447
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.||+ ++-.||||||||+++|||+.++++|++||.|.|++|++....|.+..-+..-+++|+|++|||.. ..+.+|+|
T Consensus 636 eIGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~I 712 (1381)
T KOG0054|consen 636 EIGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQI 712 (1381)
T ss_pred eecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEE
Confidence 7775 44569999999999999999999999999999999999999988766554445899999999964 68999999
Q ss_pred EEecCCEEEeeCChhhHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~ 331 (737)
++|++|+|+..|+.+|+.+
T Consensus 713 ivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 713 IVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred EEecCCeEecccCHHHHHh
Confidence 9999999999999999873
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.5e-32 Score=347.49 Aligned_cols=196 Identities=23% Similarity=0.388 Sum_probs=159.4
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
+++|+|+|++|++|++++|+|||||||||||++|+|.+++. +|+|.++| .++||+|++.+++. ||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~--~G~i~~~g----------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS--EGKIKHSG----------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECC----------EEEEEeCCCccCCc-cHHH
Confidence 56999999999999999999999999999999999998754 89999998 37999999999986 9999
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDS 274 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~ 274 (737)
||.|+.... .....+..+...+++.++.+. ...+|.+|+ .+..||||||||++||||++.+|+|+||||||||||+
T Consensus 506 NI~~g~~~~-~~~~~~~~~~~~L~~~l~~l~--~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 506 NIIFGLSYD-EYRYTSVIKACQLEEDIALFP--EKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred HHHhccccc-hHHHHHHHHHHhHHHHHHhcc--ccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 999974321 000000011112333344432 234567774 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 275 TSAFNVVKV-LKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 275 ~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
.++..+++. ++++. +|+|+|++||++.. .+.||+|++|++|+++..|+++++.
T Consensus 582 ~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 582 VTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999985 66665 48999999999864 4679999999999999999998875
No 361
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-33 Score=263.20 Aligned_cols=215 Identities=30% Similarity=0.420 Sum_probs=171.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++++|+.|... .-.+||||.+.|||+++|+|.|||||||||+||++++.|+ +|+|
T Consensus 6 LL~V~~lsk~Yg~~--------------------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~--~G~v 63 (258)
T COG4107 6 LLSVSGLSKLYGPG--------------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTV 63 (258)
T ss_pred ceeehhhhhhhCCC--------------------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC--CCeE
Confidence 78999999999743 3578999999999999999999999999999999999865 8999
Q ss_pred EECC---EeCC-----ccc----ccceEEEEecCCC--CCCC----CCHHHHHHH-hhhhcCCCCCcHHHHHHHHHHHHH
Q 036088 162 TLNG---EVLG-----SKL----LKIISAYVMQDDL--LYSM----LTIEETLMF-SAEFRLPRSLSKEKKRKRVDALID 222 (737)
Q Consensus 162 ~~~G---~~~~-----~~~----~~~~~~yV~Q~~~--l~~~----lTV~e~l~~-~~~~~~~~~~~~~~~~~~v~~~l~ 222 (737)
.+.- ++.+ +.. .|...|+|.|++. |-.. -.|.|-++- +.+ .-...++...++|+
T Consensus 64 ~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-------HYG~iR~~a~~WL~ 136 (258)
T COG4107 64 TYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-------HYGNIRAEAQDWLE 136 (258)
T ss_pred EEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-------hhhhHHHHHHHHHH
Confidence 9854 3322 111 2334599999863 3222 234444332 111 12345667889999
Q ss_pred HcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCC
Q 036088 223 QLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQP 301 (737)
Q Consensus 223 ~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~ 301 (737)
++.++..+ + +..++.+|||+|||+.|||-|++.|++.|+||||.|||..-+..++++++.|..+ |..+|++|||.
T Consensus 137 ~VEI~~~R---i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl 212 (258)
T COG4107 137 EVEIDLDR---I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred hcccCccc---c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh
Confidence 99887432 2 5678899999999999999999999999999999999999999999999999875 89999999997
Q ss_pred cHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 302 SHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 302 ~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
. -+.-++||.++|++|+++++|-.+.+.
T Consensus 213 ~-VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 213 A-VARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred H-HHHHhhhcceeecCCCEeccccccccc
Confidence 5 356679999999999999999877664
No 362
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=6.5e-33 Score=321.54 Aligned_cols=181 Identities=27% Similarity=0.406 Sum_probs=152.6
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEE-----------ECCEeCCcc-----cccceEE
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVT-----------LNGEVLGSK-----LLKIISA 178 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~-----------~~G~~~~~~-----~~~~~~~ 178 (737)
..+|++++ .+++||+++|+||||||||||||+|+|+++|+ +|+|. ++|+++... ..+..++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~--~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN--LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC--CccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 46899999 99999999999999999999999999998755 89997 999887431 1112345
Q ss_pred EEecC----CCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHH
Q 036088 179 YVMQD----DLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGV 254 (737)
Q Consensus 179 yV~Q~----~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~ 254 (737)
+++|. +.++.. ||+|++... +..++++++++.+||.+..|+.++ .|||||||||+||+
T Consensus 164 ~~~q~~~~~p~~~~~-tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~ 225 (590)
T PRK13409 164 HKPQYVDLIPKVFKG-KVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAA 225 (590)
T ss_pred ecccchhhhhhhhcc-hHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHH
Confidence 55554 344443 999998631 134578999999999887776665 69999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 255 DIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 255 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
+|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|++++|.++
T Consensus 226 al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 226 ALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999988 999999999986 578899999999763
No 363
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-32 Score=330.33 Aligned_cols=230 Identities=20% Similarity=0.306 Sum_probs=189.5
Q ss_pred CCCCCCCCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 73 SNELPNYPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 73 ~~~~~~~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+..+|. ...|+|+|++.+|... ...+|||||++|+|||.++|+|..|||||||.++|-++.
T Consensus 1130 p~~WP~-~G~I~f~~~~~RYrp~------------------lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~ 1190 (1381)
T KOG0054|consen 1130 PPSWPS-KGEIEFEDLSLRYRPN------------------LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV 1190 (1381)
T ss_pred CCCCCC-CCeEEEEEeEEEeCCC------------------CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc
Confidence 334444 3489999999999743 356999999999999999999999999999999999998
Q ss_pred CCCCcceEEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc
Q 036088 153 SKQRLKGTVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA 229 (737)
Q Consensus 153 ~~~~~~G~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 229 (737)
.+ .+|+|.+||.|+.. ..+|++++.+||||.||.+ |||.||.-..+. .+.++.++-.+....+.++.+ +..
T Consensus 1191 e~--~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~-sD~~IW~ALe~~~Lk~~v~~~--p~~ 1264 (1381)
T KOG0054|consen 1191 EP--AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY-SDDEIWEALERCQLKDVVSSL--PGG 1264 (1381)
T ss_pred Cc--cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccccc-CHHHHHHHHHHhChHHHHhhC--CcC
Confidence 75 48999999999976 4678889999999999998 999999632211 111222233334455555543 334
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhc
Q 036088 230 AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 230 ~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 309 (737)
.|+.|. +.+..+|-||||-+++||||+++.+||+|||+|+++|+++-..|.++||+-= +++|||.+.|+.+. .--+
T Consensus 1265 Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T--Vmd~ 1340 (1381)
T KOG0054|consen 1265 LDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT--VMDS 1340 (1381)
T ss_pred CCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch--hhhc
Confidence 677774 5667899999999999999999999999999999999999999999999854 37999999999875 4578
Q ss_pred ceEEEecCCEEEeeCChhhHHH
Q 036088 310 DRLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~~~~~ 331 (737)
|||+||++|+++++|+|.++.+
T Consensus 1341 DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1341 DRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred CeEEEeeCCeEeecCChHHHHh
Confidence 9999999999999999999864
No 364
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=1.7e-31 Score=338.33 Aligned_cols=198 Identities=27% Similarity=0.401 Sum_probs=156.1
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
.+.+|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++ +.++||+|++.+++ .||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~--~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS--EGRVWAE----------RSIAYVPQQAWIMN-ATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEEC----------CeEEEEeCCCccCC-CcHH
Confidence 456999999999999999999999999999999999998754 8999863 35899999998886 5999
Q ss_pred HHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 036088 194 ETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLD 273 (737)
Q Consensus 194 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD 273 (737)
|||.|+.... .....+..+...+++.++.+ .+..++.+| +.+..||||||||++|||||+.+|+|+||||||++||
T Consensus 739 enI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~-~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD 814 (1560)
T PTZ00243 739 GNILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIG-EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814 (1560)
T ss_pred HHHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 9999863210 00000111112344455555 112345565 4466899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 274 STSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 274 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
+.++..+++.+.....+|+|+|++||++.. .+.+|+|++|++|++++.|+.+++.
T Consensus 815 ~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 815 AHVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999987543222358999999999863 5789999999999999999998864
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=2.8e-31 Score=301.10 Aligned_cols=207 Identities=26% Similarity=0.361 Sum_probs=170.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++|++++|. .+.+++|+|+++.+|+.++|+|+||||||||||+|+|...++ +|+|
T Consensus 3 ~i~~~~ls~~~g--------------------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~--~G~i 60 (530)
T COG0488 3 MITLENLSLAYG--------------------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD--SGEV 60 (530)
T ss_pred eEEEeeeEEeeC--------------------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC--CCeE
Confidence 689999999995 467999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhc-------------CCCC--------------CcHHHHH
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFR-------------LPRS--------------LSKEKKR 214 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~-------------~~~~--------------~~~~~~~ 214 (737)
...+. ..++|++|++.+.+..||.+.+.-+..-. .+.. ......+
T Consensus 61 ~~~~~--------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e 132 (530)
T COG0488 61 TRPKG--------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLE 132 (530)
T ss_pred eecCC--------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchH
Confidence 87542 24799999999999999999887553210 0000 0001123
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEE
Q 036088 215 KRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIV 294 (737)
Q Consensus 215 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv 294 (737)
.++..++..||+.+. ++.++ .||||||.||+||++|+.+|++|||||||+.||..+...+-+.|++. .| |+
T Consensus 133 ~~~~~~L~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tv 203 (530)
T COG0488 133 ARAEEALLGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TV 203 (530)
T ss_pred HHHHHHHhcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cE
Confidence 678889999999876 66665 59999999999999999999999999999999999999999999864 46 99
Q ss_pred EEEecCCcHHHHhhcceEEEecCCEEE-eeCChhh
Q 036088 295 IMSIHQPSHRILSLLDRLIFLSNGQAV-CSEAPSN 328 (737)
Q Consensus 295 i~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~ 328 (737)
|+|||| +..+-+.|++|+-++.|++. |.|..+.
T Consensus 204 iiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 204 IVVSHD-RYFLDNVATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred EEEeCC-HHHHHHHhhheEEecCCceeEecCCHHH
Confidence 999999 45688899999999999764 5666544
No 366
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.2e-31 Score=316.49 Aligned_cols=221 Identities=18% Similarity=0.176 Sum_probs=158.7
Q ss_pred CCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCc
Q 036088 79 YPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK-QRL 157 (737)
Q Consensus 79 ~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~-~~~ 157 (737)
...+|+++|++++|+ .+.+|+|+||+|.+|+.+||+|||||||||||++|+|+... .+.
T Consensus 174 ~~~~I~i~nls~~y~--------------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~ 233 (718)
T PLN03073 174 AIKDIHMENFSISVG--------------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPK 233 (718)
T ss_pred CceeEEEceEEEEeC--------------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCC
Confidence 455799999999995 24599999999999999999999999999999999996411 234
Q ss_pred ceEEEECCEeCCccc-----------------ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCC--------------
Q 036088 158 KGTVTLNGEVLGSKL-----------------LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPR-------------- 206 (737)
Q Consensus 158 ~G~I~~~G~~~~~~~-----------------~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~-------------- 206 (737)
+|+|.+.++.+.... .++.++|++|++.+... ++.++.........+.
T Consensus 234 ~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 312 (718)
T PLN03073 234 NCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRL 312 (718)
T ss_pred CCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHH
Confidence 788876554321100 11224566665433221 2222111000000000
Q ss_pred -CCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 036088 207 -SLSKEKKRKRVDALIDQLGLR-SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVL 284 (737)
Q Consensus 207 -~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L 284 (737)
.......++++.++++.+|+. +..++.+ ..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|
T Consensus 313 ~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L 387 (718)
T PLN03073 313 ELIDAYTAEARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL 387 (718)
T ss_pred HhcCcchHHHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 000012345677888888885 3344444 469999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEE-eeCChhhH
Q 036088 285 KQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAV-CSEAPSNL 329 (737)
Q Consensus 285 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~ 329 (737)
+++ +.|||+++|+.. .+.+.||++++|++|+++ |.|+.++.
T Consensus 388 ~~~---~~tviivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 388 LKW---PKTFIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHc---CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 886 679999999975 577889999999999996 67776554
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=4.2e-30 Score=264.80 Aligned_cols=191 Identities=21% Similarity=0.322 Sum_probs=134.8
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHH-HHHHcCCCCCCcceEEEEC-----------C--EeCCccccc-ceEE
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLM-DAIAGRISKQRLKGTVTLN-----------G--EVLGSKLLK-IISA 178 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL-~~L~G~~~~~~~~G~I~~~-----------G--~~~~~~~~~-~~~~ 178 (737)
...+|+||||++++||+++|+||||||||||+ ..|.. .|++.+. | ........+ ...+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 45699999999999999999999999999995 44431 2222110 0 000000111 1223
Q ss_pred EEecCCC--CCCCCCHH---HHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHH
Q 036088 179 YVMQDDL--LYSMLTIE---ETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-AAMTIIGDEQHRGVSGGERRRVSI 252 (737)
Q Consensus 179 yV~Q~~~--l~~~lTV~---e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRvsi 252 (737)
+..|++. +.+..+|. |...+...+. ......++ .+.++.++|.+ ..+. .+..||||||||++|
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~l 148 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIRL 148 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHHHH
Confidence 4444432 23444554 2222221111 11112233 56899999975 3443 445799999999999
Q ss_pred HHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe------cCCEEEeeC
Q 036088 253 GVDIIHDP--ILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL------SNGQAVCSE 324 (737)
Q Consensus 253 A~aL~~~p--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G 324 (737)
|++|+.+| ++|||||||+|||+.++..+.+.|++++++|.|+|++||++.. .+.||++++| ++|+++++|
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~--~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT--IRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH--HHhCCEEEEeCCCccccCCEEEecC
Confidence 99999998 5999999999999999999999999998789999999999863 4799999999 899999876
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=1.3e-30 Score=246.89 Aligned_cols=134 Identities=34% Similarity=0.608 Sum_probs=120.5
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHH
Q 036088 118 LDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 118 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
|+|||+++++|++++|+||||||||||+++|+|..++ .+|+|.++|+++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999875 48999999999976 346677899999999999999999
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPIS 270 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTs 270 (737)
| ...++++++++.+++.+..++.++. ....||||||||++||++|+.+|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 2345689999999999888888854 347899999999999999999999999999996
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2.2e-29 Score=263.38 Aligned_cols=196 Identities=24% Similarity=0.352 Sum_probs=153.5
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHH-----cCCC-----C---------CCcceEEEECCEeCCccc---
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIA-----GRIS-----K---------QRLKGTVTLNGEVLGSKL--- 172 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~-----G~~~-----~---------~~~~G~I~~~G~~~~~~~--- 172 (737)
..-|+|||..|+.|++++|.|+||||||||++.+. ..+. + ....--|.++..|+....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998652 1100 1 011124777877774310
Q ss_pred ----------ccc----------------eEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC
Q 036088 173 ----------LKI----------------ISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL 226 (737)
Q Consensus 173 ----------~~~----------------~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 226 (737)
.|+ .+.|..++...+..+||.|++.|..... ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 111 0245556666677899999999875432 13467789999999
Q ss_pred cc-cccccccCCCCCCCCHHHHHHHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCc
Q 036088 227 RS-AAMTIIGDEQHRGVSGGERRRVSIGVDIIHD---PILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPS 302 (737)
Q Consensus 227 ~~-~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~---p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 302 (737)
.. ..+. ..+.||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|||+++|++.
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 3433 3457999999999999999996 7999999999999999999999999999888999999999986
Q ss_pred HHHHhhcceEEEe------cCCEEEeeCCh
Q 036088 303 HRILSLLDRLIFL------SNGQAVCSEAP 326 (737)
Q Consensus 303 ~~i~~~~D~v~lL------~~G~iv~~G~~ 326 (737)
. .+.+|+++.| ++|++++.|++
T Consensus 234 ~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 V--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 3 4689999999 78999999874
No 370
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.6e-29 Score=239.25 Aligned_cols=215 Identities=25% Similarity=0.337 Sum_probs=172.1
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
+..|.++|+++++.-..+ ..-..++|+|+||+++.||++++=||||+||||||++|-|-+.++ +|
T Consensus 2 ~~~l~v~~~~KtFtlH~q-------------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d--~G 66 (235)
T COG4778 2 PTPLNVSNVSKTFTLHQQ-------------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD--EG 66 (235)
T ss_pred CceeeeecchhheEeeec-------------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC--Cc
Confidence 346889999988864321 112467999999999999999999999999999999999998755 89
Q ss_pred EEEEC--CEeCC--c---c---c-ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc
Q 036088 160 TVTLN--GEVLG--S---K---L-LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS 228 (737)
Q Consensus 160 ~I~~~--G~~~~--~---~---~-~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 228 (737)
+|.+. |.-++ . . . .++-+|||.|.-...|..+..|-++-.+.- .+++.+...+++.+++.+|++.+
T Consensus 67 ~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlpe 143 (235)
T COG4778 67 QILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPE 143 (235)
T ss_pred eEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCH
Confidence 99885 33222 1 1 1 234579999988888877777766554432 35677788899999999999986
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhh
Q 036088 229 AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSL 308 (737)
Q Consensus 229 ~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 308 (737)
..= .-.+.+.||||+|||.|||.++.+-+||+|||||+.||..++.-++++|++-+.+|..+|=+-||-+ --...
T Consensus 144 rLW----~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee-vre~v 218 (235)
T COG4778 144 RLW----SLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE-VREAV 218 (235)
T ss_pred HHh----cCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH-HHHHH
Confidence 442 2245689999999999999999999999999999999999999999999998888999999999943 23457
Q ss_pred cceEEEecC
Q 036088 309 LDRLIFLSN 317 (737)
Q Consensus 309 ~D~v~lL~~ 317 (737)
+||++-+..
T Consensus 219 adR~~~~~~ 227 (235)
T COG4778 219 ADRLLDVSA 227 (235)
T ss_pred hhheeeccc
Confidence 999998864
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=7e-29 Score=250.34 Aligned_cols=166 Identities=21% Similarity=0.264 Sum_probs=132.7
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-------CcceEEEECCEeCCcccccceEEEEecCCCCCCCCC
Q 036088 119 DDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ-------RLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLT 191 (737)
Q Consensus 119 ~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-------~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lT 191 (737)
+++++++++| +++|+||||||||||+++|+|+..+. ...|++.++|++......++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7789999999 99999999999999999999986432 22457888888765434456789999998766
Q ss_pred HHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCcEEEEeC
Q 036088 192 IEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDII----HDPILLFLDE 267 (737)
Q Consensus 192 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~----~~p~illLDE 267 (737)
|.. . ..++++++++. .+..++ .+..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 111 0 12356677776 333333 34579999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 268 PISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 268 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
||+|||+.....+.+.|+++++ +.|||++||++. ..+.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 9999999999999999999975 689999999975 3578999999964
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.9e-27 Score=269.95 Aligned_cols=205 Identities=25% Similarity=0.332 Sum_probs=168.0
Q ss_pred CCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 036088 79 YPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLK 158 (737)
Q Consensus 79 ~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~ 158 (737)
.+..++++|+++.|+. .+.+++++||.+.+|+.+||+||||+|||||||+|+|...+. +
T Consensus 318 g~~vl~~~~~~~~y~~-------------------~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~--~ 376 (530)
T COG0488 318 GKLVLEFENVSKGYDG-------------------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL--S 376 (530)
T ss_pred CCeeEEEeccccccCC-------------------CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC--C
Confidence 3558999999999963 267999999999999999999999999999999999997654 8
Q ss_pred eEEEECCEeCCcccccceEEEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-ccccccC
Q 036088 159 GTVTLNGEVLGSKLLKIISAYVMQDD-LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA-AMTIIGD 236 (737)
Q Consensus 159 G~I~~~G~~~~~~~~~~~~~yV~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~ 236 (737)
|+|.+.-. -.+||..|+. .+.+..|+.|++.-.... . .+..+...|..++++.. ..+.|
T Consensus 377 G~v~~g~~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~-----~----~e~~~r~~L~~f~F~~~~~~~~v-- 437 (530)
T COG0488 377 GTVKVGET--------VKIGYFDQHRDELDPDKTVLEELSEGFPD-----G----DEQEVRAYLGRFGFTGEDQEKPV-- 437 (530)
T ss_pred ceEEeCCc--------eEEEEEEehhhhcCccCcHHHHHHhhCcc-----c----cHHHHHHHHHHcCCChHHHhCch--
Confidence 99987432 2479999985 555888999998753211 1 15678899999999743 33444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
+.||||||.||.+|+.++.+|.+|||||||+.||..+...+.+.|.+. .-|||+||||.. .+-+.+++++++.
T Consensus 438 ---~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~ 510 (530)
T COG0488 438 ---GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVE 510 (530)
T ss_pred ---hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEc
Confidence 469999999999999999999999999999999999999999998876 359999999965 5889999999999
Q ss_pred CCEEE-eeCChhhHHH
Q 036088 317 NGQAV-CSEAPSNLSQ 331 (737)
Q Consensus 317 ~G~iv-~~G~~~~~~~ 331 (737)
+ ++. +.|..++..+
T Consensus 511 ~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 511 D-KVEEFEGGYEDYLE 525 (530)
T ss_pred C-ceeEcCCCHHHHHH
Confidence 8 554 4476655443
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=2.9e-29 Score=238.51 Aligned_cols=196 Identities=25% Similarity=0.404 Sum_probs=168.1
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHH
Q 036088 118 LDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 118 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
|-.+|+++..||+.-++|||||||||||-.++|+.+ . +|+|.++|+++.. ....+..+|..|+..-...+.|..
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~--sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-G--SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCC-C--CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 677899999999999999999999999999999974 3 7999999999864 345556689988865555578998
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-----C--CcEEEEeC
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIH-----D--PILLFLDE 267 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~-----~--p~illLDE 267 (737)
.+.+. .+.++....++++.+.|+|++...+.+ ..|||||-|||-+|...+. | .++|+|||
T Consensus 92 YL~L~--------qP~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDE 158 (248)
T COG4138 92 YLTLH--------QPDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE 158 (248)
T ss_pred hhhhc--------CchHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecC
Confidence 88764 234566778899999999987664444 4799999999999987663 3 37899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 268 PISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 268 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
|.++||...+..+-++|.+++.+|++|||+.||.+. ..+.+|++++|++|++...|..+|+.
T Consensus 159 P~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 159 PMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 999999999999999999999999999999999985 78999999999999999999998874
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.5e-27 Score=264.74 Aligned_cols=201 Identities=25% Similarity=0.433 Sum_probs=171.7
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc----cccceEEEEecC---CCCCCC
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK----LLKIISAYVMQD---DLLYSM 189 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~----~~~~~~~yV~Q~---~~l~~~ 189 (737)
.++|+||++++||+++|-|-=|||+|-|+++|.|..+ ..+|+|.+||+++... ..+..++|||.| +-++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 5799999999999999999999999999999999754 3489999999988643 245568999987 468999
Q ss_pred CCHHHHHHHhhhhcCC-C-CCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 036088 190 LTIEETLMFSAEFRLP-R-SLSKEKKRKRVDALIDQLGLRS-AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLD 266 (737)
Q Consensus 190 lTV~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLD 266 (737)
++|++|+.++...+.. . -++....++.+++.++.|++.. ..+.. +..||||.+|+|.|||.|..+|++||||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 9999999988322211 1 2556667788999999998853 23344 4469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCC
Q 036088 267 EPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEA 325 (737)
Q Consensus 267 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 325 (737)
|||.|.|.-+..+|.+++++++++|++||++|.+.. |+..+||||++|++|+++..=+
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999975 6999999999999999986433
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.4e-26 Score=240.88 Aligned_cols=184 Identities=16% Similarity=0.287 Sum_probs=130.0
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC----------------CCCCcce--------EEEECCEe---
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRI----------------SKQRLKG--------TVTLNGEV--- 167 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~----------------~~~~~~G--------~I~~~G~~--- 167 (737)
+.++++++ |++++|+|||||||||||++|++.+ .++ +| +|.+++.+
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~--~~~~~~~~~v~i~~~~~~~~~ 87 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG--SGPSVMSAYVEIIFDNSDNRF 87 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC--CCCCCceEEEEEEEEcCCCcc
Confidence 55788876 7899999999999999999998432 222 34 55665532
Q ss_pred -CC--cccccceEEEEecCCCCCC-CCCHHHHHHHhhhhcCCCCCcH-HHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 036088 168 -LG--SKLLKIISAYVMQDDLLYS-MLTIEETLMFSAEFRLPRSLSK-EKKRKRVDALIDQLGLRSAAMTIIGDEQHRGV 242 (737)
Q Consensus 168 -~~--~~~~~~~~~yV~Q~~~l~~-~lTV~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 242 (737)
+. ....++.++|++|+..+++ ..|..|...+............ .....++.++ +++.+..+ ..++.|
T Consensus 88 ~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l---~~l~~~~~-----~~~~~l 159 (243)
T cd03272 88 PIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSL---TNMKQDEQ-----QEMQQL 159 (243)
T ss_pred CCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHh---hhcccccc-----cccccc
Confidence 11 1234566899999887776 4577776665544322111000 0001223333 34433332 344579
Q ss_pred CHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 243 SGGERRRVSIGVDIIH----DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 243 SGGqrqRvsiA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
|||||||++||++|+. +|++++|||||+|||+.++..+++.|+++++ +.++|+++|++ ++.+.||++++|.
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 9999999999999974 5899999999999999999999999999865 78888888885 4789999999985
No 376
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.9e-27 Score=246.79 Aligned_cols=205 Identities=20% Similarity=0.301 Sum_probs=169.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++|+.|.|... .-=+..||++|++||++-|+|.||||||||+++|.|++.|+ +|+|
T Consensus 322 ~lelrnvrfay~~~-------------------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq--sG~I 380 (546)
T COG4615 322 TLELRNVRFAYQDN-------------------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ--SGEI 380 (546)
T ss_pred ceeeeeeeeccCcc-------------------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC--CCce
Confidence 69999999999743 13478999999999999999999999999999999998865 8999
Q ss_pred EECCEeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 162 TLNGEVLGSK---LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 162 ~~~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
++||+|++.+ ++|+..+-|+-|-++|+.+=-.| .. ...+.++..|++|.|.+...-.-|+-.
T Consensus 381 ~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e------------~~---as~q~i~~~LqrLel~~ktsl~d~~fs 445 (546)
T COG4615 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE------------GK---ASPQLIEKWLQRLELAHKTSLNDGRFS 445 (546)
T ss_pred eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCc------------cC---CChHHHHHHHHHHHHhhhhcccCCccc
Confidence 9999999764 57777788888888888631111 11 123568888898888765433333334
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQ-IAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
.-.||.|||||+++-.||+-+-+|+++||=-+..||.-++.+.+.+-- ++++|+||+.+|||.. -|..+||++.+++
T Consensus 446 ~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~ 523 (546)
T COG4615 446 NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRN 523 (546)
T ss_pred ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhc
Confidence 456999999999999999999999999999999999999999877655 5667999999999965 5899999999999
Q ss_pred CEEEeeC
Q 036088 318 GQAVCSE 324 (737)
Q Consensus 318 G~iv~~G 324 (737)
|++++.-
T Consensus 524 G~~~e~t 530 (546)
T COG4615 524 GQLSELT 530 (546)
T ss_pred Cceeecc
Confidence 9998753
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=9.2e-28 Score=244.90 Aligned_cols=178 Identities=17% Similarity=0.175 Sum_probs=133.7
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
.+.+++++++ ++++|+||||||||||+++|.-. +|.+... ..++.+++++|+..+++.+|++
T Consensus 16 ~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~------------~G~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 77 (212)
T cd03274 16 GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV------------FGFRASK-MRQKKLSDLIHNSAGHPNLDSC 77 (212)
T ss_pred CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH------------hccCHHH-hhhhhHHHHhcCCCCCCCCceE
Confidence 4568898887 89999999999999999999722 2332211 1124578999998889999999
Q ss_pred HHHHHhhhhcCC-----CCCcHHHHHH--HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh----CCcE
Q 036088 194 ETLMFSAEFRLP-----RSLSKEKKRK--RVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIH----DPIL 262 (737)
Q Consensus 194 e~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~----~p~i 262 (737)
|.+.+....... .++..+.... ..+++++.++|.+..++.++ .||+|||||++||++++. +|++
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 987765432100 0111111110 12566677788776666544 699999999999999974 5799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 263 LFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 263 llLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
++|||||+|||+.+...+.+.|+++++ +.|+|++||++ ++.+.||++++|..
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999999999999999999999864 67888889995 47899999999975
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=1.9e-26 Score=241.43 Aligned_cols=184 Identities=20% Similarity=0.242 Sum_probs=137.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCE-eCCc-----ccccceEEEEecCC---------CCCCCCCH
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGE-VLGS-----KLLKIISAYVMQDD---------LLYSMLTI 192 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~-~~~~-----~~~~~~~~yV~Q~~---------~l~~~lTV 192 (737)
..+++|+||||||||||+++|++.+.+. ..|++...|. ++-. ...+..+++++|++ .+.+.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 4499999999999999999999998642 2468888776 3211 11233678999984 34567899
Q ss_pred HHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc---------------cccCCCCCCCCHHHHHHHHHHHHHh
Q 036088 193 EETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT---------------IIGDEQHRGVSGGERRRVSIGVDII 257 (737)
Q Consensus 193 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSGGqrqRvsiA~aL~ 257 (737)
.+++......+.... .+....+++.++++.+|+...... ..-+..+..||||||||++||++|+
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 998876542211000 122334789999999998611000 0112345679999999999999998
Q ss_pred ----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 258 ----HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 258 ----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.+|++++|||||+|||+.....+.+.|+++. +|.|+|++||++ ++.+.||+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999986 488999999994 4788999998875
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=4.9e-26 Score=230.93 Aligned_cols=165 Identities=16% Similarity=0.259 Sum_probs=126.8
Q ss_pred eeEEEecCcEEEEEcCCCCcHHHHHHHHH----cCCCCCCcceEEEECCEeCCcccccceEEEEecCC-----CCCCCCC
Q 036088 121 ISGVASEGEITAILGASGSSKTTLMDAIA----GRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDD-----LLYSMLT 191 (737)
Q Consensus 121 vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~----G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~-----~l~~~lT 191 (737)
.++++.+| +++|+|||||||||||++|. |...++ +|.+..+.+.+.....+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~--~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN--SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc--cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 34567788 99999999999999999995 876543 565552222333334456789999987 4455668
Q ss_pred HHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH------HHHHHHHhhCCcEEEE
Q 036088 192 IEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRR------VSIGVDIIHDPILLFL 265 (737)
Q Consensus 192 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqR------vsiA~aL~~~p~illL 265 (737)
|.|++.+.. . +.+++.+ +..++.||+||||| ++||++++.+|++++|
T Consensus 93 ~~~~~~~~~---------~----~~~~~~~--------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFCH---------Q----GESNWPL--------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeeec---------h----HHHHHHH--------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888886531 1 1233333 23345799999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 266 DEPISGLDSTSAF-NVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 266 DEPTsgLD~~~~~-~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
||||++||+..+. .+.+.|++++++ |.|||++||++. ..+.||+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 999999999876 889999999975 4578999999965
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=5.6e-26 Score=232.11 Aligned_cols=180 Identities=19% Similarity=0.162 Sum_probs=124.2
Q ss_pred eeeeEEEe-cCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECC--EeCCcccccceEEEEecCCCCCCCCCHHHH
Q 036088 119 DDISGVAS-EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG--EVLGSKLLKIISAYVMQDDLLYSMLTIEET 195 (737)
Q Consensus 119 ~~vs~~i~-~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G--~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~ 195 (737)
++++|... +|++++|+|||||||||||++|++.+. +...+....+. ..+.....+..+++++|++.... ++...
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-GKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-cCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 55666543 589999999999999999999996542 12233333321 11122234455789999863211 11111
Q ss_pred HHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh----------CCcEEEE
Q 036088 196 LMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIH----------DPILLFL 265 (737)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~----------~p~illL 265 (737)
. ..+..+..+.+ .++..++.+..+. .+..||||||||++||++|+. +|++++|
T Consensus 95 ~----------gl~~~~~~~~~--~l~~g~l~~~l~~-----~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 R----------GLDYDQFTRIV--LLPQGEFDRFLAR-----PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred c----------CCCHHHHHHhh--hhhhcchHHHhcC-----CccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 1 22222211111 2333334444433 345799999999999999985 5789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 266 DEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 266 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
||||+|||+.+...+.+.|++++++++|||++||++. .+...+|+++++++|.
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 9999999999999999999999877999999999986 5778899999999874
No 381
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=5.3e-25 Score=273.93 Aligned_cols=206 Identities=23% Similarity=0.367 Sum_probs=151.5
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHH---------HHHcCCCC-CCcc-e----EEEECCEeCCcc----------
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMD---------AIAGRISK-QRLK-G----TVTLNGEVLGSK---------- 171 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~---------~L~G~~~~-~~~~-G----~I~~~G~~~~~~---------- 171 (737)
.|+|+|++|++||+++|.|+||||||||++ .|.|...+ ...+ + -|.++..++...
T Consensus 610 ~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g 689 (1809)
T PRK00635 610 NLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIK 689 (1809)
T ss_pred CccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehh
Confidence 699999999999999999999999999999 55554211 0001 1 123333332210
Q ss_pred ---ccc---------ce-----EEEEecC--------------------------------------CCCCCCCCHHHHH
Q 036088 172 ---LLK---------II-----SAYVMQD--------------------------------------DLLYSMLTIEETL 196 (737)
Q Consensus 172 ---~~~---------~~-----~~yV~Q~--------------------------------------~~l~~~lTV~e~l 196 (737)
..| +. ..|.++. ...+...||.|+|
T Consensus 690 ~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL 769 (1809)
T PRK00635 690 AFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADIL 769 (1809)
T ss_pred hhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHH
Confidence 011 00 0122221 1256678999999
Q ss_pred HHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCcEEEEeCCCCCC
Q 036088 197 MFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA-AMTIIGDEQHRGVSGGERRRVSIGVDII---HDPILLFLDEPISGL 272 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRvsiA~aL~---~~p~illLDEPTsgL 272 (737)
.++..-........++..+++ ++++.+||.+. .+.. ...||||||||++||++|+ .+|++|||||||+||
T Consensus 770 ~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGL 843 (1809)
T PRK00635 770 EMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGL 843 (1809)
T ss_pred HcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCC
Confidence 887653211112234455566 58899999764 4444 4469999999999999998 699999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec------CCEEEeeCChhhHH
Q 036088 273 DSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS------NGQAVCSEAPSNLS 330 (737)
Q Consensus 273 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~ 330 (737)
|+.+...+++.|++++++|.|||+++|++.. + +.+|++++|. +|++++.|+++++.
T Consensus 844 D~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 844 HTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9999999999999999889999999999863 5 8999999996 78999999998874
No 382
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=8.2e-25 Score=238.29 Aligned_cols=225 Identities=25% Similarity=0.389 Sum_probs=188.5
Q ss_pred CCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 036088 79 YPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLK 158 (737)
Q Consensus 79 ~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~ 158 (737)
.+..|+++||+..-.. ....+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++. +
T Consensus 254 g~~vL~V~~L~v~~~~-------------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~--~ 312 (501)
T COG3845 254 GEVVLEVEDLSVKDRR-------------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA--S 312 (501)
T ss_pred CCeEEEEeeeEeecCC-------------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC--C
Confidence 3568999999875532 245799999999999999999999999999999999997644 6
Q ss_pred eEEEECCEeC-C---ccc-ccceEEEEecCC---CCCCCCCHHHHHHHhhhhcC----CCCCcHHHHHHHHHHHHHHcCC
Q 036088 159 GTVTLNGEVL-G---SKL-LKIISAYVMQDD---LLYSMLTIEETLMFSAEFRL----PRSLSKEKKRKRVDALIDQLGL 226 (737)
Q Consensus 159 G~I~~~G~~~-~---~~~-~~~~~~yV~Q~~---~l~~~lTV~e~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL 226 (737)
|+|.++|+++ . ... .+.-++|||.|. .+.+.+|+.||+.+....+. ..-+...+.++...+++++++.
T Consensus 313 G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdV 392 (501)
T COG3845 313 GRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDV 392 (501)
T ss_pred ceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCc
Confidence 9999999997 2 222 234579999985 57888999999988754321 1135667778899999999988
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHH
Q 036088 227 RSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRIL 306 (737)
Q Consensus 227 ~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 306 (737)
...-. ....+.||||++||+-+||+|..+|++|+..+||.|||..+...|.+.|.+++++|+.|++++-+.. +++
T Consensus 393 r~~~~----~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil 467 (501)
T COG3845 393 RAPSP----DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EIL 467 (501)
T ss_pred cCCCC----CcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHH
Confidence 63211 2235679999999999999999999999999999999999999999999999999999999999986 699
Q ss_pred hhcceEEEecCCEEEeeCChhhH
Q 036088 307 SLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 307 ~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
+++|||.+|.+|+++...++++.
T Consensus 468 ~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 468 ELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred HhhheeeeeeCCceecccccccC
Confidence 99999999999999988777653
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=2.5e-25 Score=251.46 Aligned_cols=198 Identities=26% Similarity=0.375 Sum_probs=161.7
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
...|+++||+..-+.+ +..|++.++.+++||.+.|.||||||||||+|+|+|+.+.+ +|
T Consensus 390 ~~~i~~~nl~l~~p~~-------------------~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G 448 (604)
T COG4178 390 DHGITLENLSLRTPDG-------------------QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SG 448 (604)
T ss_pred cceeEEeeeeEECCCC-------------------CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CC
Confidence 4589999999877642 47999999999999999999999999999999999999755 68
Q ss_pred EEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC-CC
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD-EQ 238 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-~~ 238 (737)
+|.+- ....+-|+||.+++... |.||-|.|..... .. .++.+.++|.++||++..+..=+. +-
T Consensus 449 ~I~~P--------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W 512 (604)
T COG4178 449 RISMP--------ADSALLFLPQRPYLPQG-TLREALCYPNAAP---DF----SDAELVAVLHKVGLGDLAERLDEEDRW 512 (604)
T ss_pred ceecC--------CCCceEEecCCCCCCCc-cHHHHHhCCCCCC---CC----ChHHHHHHHHHcCcHHHHHHHhccCcH
Confidence 87653 11235799999999888 9999998864321 12 345688899999998876554221 23
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
.+.||+||||||++||.|+++|++++|||.||+||+.++..+.+.|++-. .+.|||-+.|++. +..+.++.+-+.+
T Consensus 513 ~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~~ 588 (604)
T COG4178 513 DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELLD 588 (604)
T ss_pred hhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeecc
Confidence 45699999999999999999999999999999999999999999999743 3789999999975 5677777666643
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=4.8e-24 Score=255.82 Aligned_cols=125 Identities=26% Similarity=0.411 Sum_probs=106.3
Q ss_pred CCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEEE
Q 036088 190 LTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDP---ILLFL 265 (737)
Q Consensus 190 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p---~illL 265 (737)
+||.|++.|...+. ...+..+.|+.+||.. ..+.. ...||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~---------~i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---------KIARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---------hhhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998865432 1123467899999975 34433 4579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe------cCCEEEeeCChhhHH
Q 036088 266 DEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL------SNGQAVCSEAPSNLS 330 (737)
Q Consensus 266 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 330 (737)
||||+|||+.+...+++.|+++.++|.|||+++|++.. .+.+|+|+.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999998889999999999853 4689999999 689999999998874
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=9e-24 Score=206.24 Aligned_cols=231 Identities=21% Similarity=0.311 Sum_probs=176.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC--Ccce
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQ--RLKG 159 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~--~~~G 159 (737)
.|.++||+..+.... +...++++||+++..||+-+++|.||||||-..|+|+|..+.. .+.-
T Consensus 3 LLDIrnL~IE~~Tsq----------------G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTAD 66 (330)
T COG4170 3 LLDIRNLTIEFKTSQ----------------GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTAD 66 (330)
T ss_pred cccccceEEEEecCC----------------CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhh
Confidence 467889998887543 2456999999999999999999999999999999999997532 1123
Q ss_pred EEEECCEeCC---cccccce----EEEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCcH---HHHHHHHHHHHHHcCCc
Q 036088 160 TVTLNGEVLG---SKLLKII----SAYVMQDDL--LYSMLTIEETLMFSAEFRLPRSLSK---EKKRKRVDALIDQLGLR 227 (737)
Q Consensus 160 ~I~~~G~~~~---~~~~~~~----~~yV~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~lgL~ 227 (737)
+..+++.++- +...|+. +++++|++. |-|.-+|..-|.-......-.+... .=++.++-++|.++|+.
T Consensus 67 R~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIK 146 (330)
T COG4170 67 RMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIK 146 (330)
T ss_pred hcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccc
Confidence 3455665542 2233333 478999974 4454455433322211111001000 11456788999999998
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHH
Q 036088 228 SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRIL 306 (737)
Q Consensus 228 ~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~ 306 (737)
+..|-. ...+.+|--||-|+|.||.|++.+|++|+.||||+.+|+.++.+|.++|.++.+ +|.||++++||.. .+-
T Consensus 147 dHkDIM--~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is 223 (330)
T COG4170 147 DHKDIM--RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MIS 223 (330)
T ss_pred cHHHHH--HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHH
Confidence 876644 456778999999999999999999999999999999999999999999999986 4889999999986 488
Q ss_pred hhcceEEEecCCEEEeeCChhhHHH
Q 036088 307 SLLDRLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 307 ~~~D~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+.||++-||.-|+-+++++.+++.+
T Consensus 224 ~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 224 QWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred HHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999988764
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=7.9e-23 Score=244.95 Aligned_cols=125 Identities=25% Similarity=0.380 Sum_probs=102.9
Q ss_pred CCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCcEEE
Q 036088 189 MLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA-AMTIIGDEQHRGVSGGERRRVSIGVDIIH---DPILLF 264 (737)
Q Consensus 189 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRvsiA~aL~~---~p~ill 264 (737)
.+||.|.+.|...+. ...+..++|+.+||... .+. ..+.||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---------~i~~~l~~L~~~gL~~l~l~~-----~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---------SISRKLQTLCDVGLGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---------chhHHHHHHHHcCCCchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367777777754321 11245678899999752 333 345799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe------cCCEEEeeCChhhH
Q 036088 265 LDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL------SNGQAVCSEAPSNL 329 (737)
Q Consensus 265 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 329 (737)
|||||+|||+.+...+++.|+++.++|.|||+++|++.. .+.+|++++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~--i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV--IKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999998889999999999863 4689999999 68999999998764
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=1.6e-23 Score=228.98 Aligned_cols=203 Identities=21% Similarity=0.284 Sum_probs=158.3
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
|..+.++|++|.|+.. ..++++++|-+..++.+|++||||+|||||||++.|.+.|. .|
T Consensus 387 ~pvi~~~nv~F~y~~~-------------------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~--~G 445 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDN-------------------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT--IG 445 (614)
T ss_pred CCeEEEeccccCCCCc-------------------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc--cc
Confidence 4578999999998742 26999999999999999999999999999999999998754 78
Q ss_pred EEEECCEeCCcccccceEEEEecC--CCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQD--DLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~--~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
.|.-.-.. .+++-.|+ +.+--+.++-|++.=.. ++....+.+..+|.++||....++ .
T Consensus 446 ~vs~~~H~--------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~----~ 505 (614)
T KOG0927|consen 446 MVSRHSHN--------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQV----V 505 (614)
T ss_pred cccccccc--------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccc----c
Confidence 87543221 22344443 34444567877775432 112345678899999999844332 2
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
..+.||+|||+||..|+.++..|.||+|||||+|||..+...+-+.|.+. ..+||+++||.. .|-+++++|.+..+
T Consensus 506 p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~ 581 (614)
T KOG0927|consen 506 PMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCEN 581 (614)
T ss_pred chhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhcc
Confidence 34579999999999999999999999999999999999999988888775 347999999976 48889999999988
Q ss_pred CEE-EeeCChh
Q 036088 318 GQA-VCSEAPS 327 (737)
Q Consensus 318 G~i-v~~G~~~ 327 (737)
|.+ .+.|...
T Consensus 582 ~~~~~~~G~i~ 592 (614)
T KOG0927|consen 582 GTVTKWDGDIE 592 (614)
T ss_pred CceeecCccHH
Confidence 754 4556543
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=4.9e-23 Score=225.29 Aligned_cols=215 Identities=20% Similarity=0.264 Sum_probs=148.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.+.+.|+++++. ++.+++|++|++.+|+.++|+|+|||||||+|++|+|...|.+.+=.+
T Consensus 75 dvk~~sls~s~~--------------------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~ 134 (614)
T KOG0927|consen 75 DVKIESLSLSFH--------------------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF 134 (614)
T ss_pred cceeeeeeeccC--------------------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch
Confidence 689999999886 467999999999999999999999999999999999998765444344
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhh-hcC--C--------------CCCcHHHHHHHHHHHHHHc
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAE-FRL--P--------------RSLSKEKKRKRVDALIDQL 224 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~-~~~--~--------------~~~~~~~~~~~v~~~l~~l 224 (737)
+.-.+++....... +-+|.+ +.-..+.-+++-++ +.. + ..+.....+.++..+|..+
T Consensus 135 y~ls~e~~ps~~~a-v~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl 208 (614)
T KOG0927|consen 135 YLLSREIEPSEKQA-VQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL 208 (614)
T ss_pred hhhcccCCCchHHH-HHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc
Confidence 44333332211110 001110 00011111111110 000 0 0122223345566677766
Q ss_pred CCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcH
Q 036088 225 GLR-SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSH 303 (737)
Q Consensus 225 gL~-~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 303 (737)
|.. +..++.+ .++|||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.-+ + ++|+++|.-.
T Consensus 209 gf~~~m~~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~QD- 280 (614)
T KOG0927|consen 209 GFLSEMQDKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHSQD- 280 (614)
T ss_pred CCCHhHHHHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecchh-
Confidence 653 3344443 46999999999999999999999999999999999999999988887532 2 8899999865
Q ss_pred HHHhhcceEEEecCCE-EEeeCChhhHH
Q 036088 304 RILSLLDRLIFLSNGQ-AVCSEAPSNLS 330 (737)
Q Consensus 304 ~i~~~~D~v~lL~~G~-iv~~G~~~~~~ 330 (737)
.+-..|.+|+-|.+++ +.|.|+.++..
T Consensus 281 fln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 281 FLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred hhhhHhhhhheecccceeeecCCHHHHh
Confidence 4788999999999998 56677776543
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=1.2e-22 Score=205.23 Aligned_cols=169 Identities=17% Similarity=0.173 Sum_probs=121.5
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEE--CCEeC----CcccccceEEEEecCCCCCCCC
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTL--NGEVL----GSKLLKIISAYVMQDDLLYSML 190 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~--~G~~~----~~~~~~~~~~yV~Q~~~l~~~l 190 (737)
-++++++++.+| +.+|+|||||||||||.+|..... |+... .|... ........+.+++|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC-
Confidence 346778888888 889999999999999999985432 22111 12211 111123346778887655541
Q ss_pred CHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH----hhCCcEEEEe
Q 036088 191 TIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDI----IHDPILLFLD 266 (737)
Q Consensus 191 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL----~~~p~illLD 266 (737)
... ...+++++++++. .+..++. ++.||+|||||++||++| +.+|++++||
T Consensus 84 ----------------~~~-~~~~~~~~~~l~~---~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlD 138 (198)
T cd03276 84 ----------------PLC-VLSQDMARSFLTS---NKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLD 138 (198)
T ss_pred ----------------cCC-HHHHHHHHHHhcc---ccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEec
Confidence 011 1124567777776 4444443 457999999999999999 5899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 267 EPISGLDSTSAFNVVKVLKQIAKS---GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 267 EPTsgLD~~~~~~i~~~L~~l~~~---g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
|||+|||..+...+.+.|+++.++ +.|||+++|++.. +.+ +|+|.+|..++
T Consensus 139 EP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 139 EFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred CcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 999999999999999999998653 3589999999874 554 59999998754
No 390
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1e-22 Score=212.78 Aligned_cols=178 Identities=20% Similarity=0.224 Sum_probs=119.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEe--CCcc--------cccceEEEEecCCCC-CCCCCHHHHHHH
Q 036088 130 ITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEV--LGSK--------LLKIISAYVMQDDLL-YSMLTIEETLMF 198 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~--~~~~--------~~~~~~~yV~Q~~~l-~~~lTV~e~l~~ 198 (737)
+++|+|||||||||||++|++.+.+. .|++..++.. +... ...-.+.|..|++.. .-..++++...
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~--~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~- 100 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEK--SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS- 100 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC--cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce-
Confidence 99999999999999999999987533 4666543321 0000 111123344444321 11112221110
Q ss_pred hhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc---------cccCC--------CCCCCCHHHHHHHHHHHHHhhC--
Q 036088 199 SAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT---------IIGDE--------QHRGVSGGERRRVSIGVDIIHD-- 259 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~~--------~~~~LSGGqrqRvsiA~aL~~~-- 259 (737)
..+... +....+.++++++.+|+...... .+.+. .+..||||||||++||++++.+
T Consensus 101 --~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~ 175 (247)
T cd03275 101 --SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSY 175 (247)
T ss_pred --EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhcc
Confidence 001111 01123456788899998633211 11111 2367999999999999999875
Q ss_pred --CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 260 --PILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 260 --p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
|+++||||||+|||+.....+.+.|++++++|.+||++||++ ++.+.+|++++|.+
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 899999999999999999999999999987799999999995 36789999999964
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.88 E-value=6.6e-22 Score=212.28 Aligned_cols=174 Identities=26% Similarity=0.324 Sum_probs=138.9
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHH
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETL 196 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l 196 (737)
-|.-=.++|..||+++++||||-||||+.++|+|.++|+ +|+ .. .-.++|=||--.--...||++-|
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l 422 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLL 422 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHH
Confidence 355556778899999999999999999999999999865 676 11 12367888864333446999988
Q ss_pred HHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 036088 197 MFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTS 276 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~ 276 (737)
.-....+... .-.-.++++-|.|+...+..+. +|||||.|||+||.+|..++++++||||++-||.+.
T Consensus 423 ~~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq 490 (591)
T COG1245 423 RSAIRSAFGS-------SYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ 490 (591)
T ss_pred HHhhhhhccc-------chhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHH
Confidence 7654332111 1234577888888888877665 699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEec
Q 036088 277 AFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 277 ~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
+..+-+.+++...+ ++|.+++-||... +--++||+++.+
T Consensus 491 R~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 491 RIIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 99999999999864 7899999999763 555789998875
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.88 E-value=7.9e-22 Score=217.26 Aligned_cols=204 Identities=19% Similarity=0.221 Sum_probs=161.1
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|++++|+..-+.. +..+.+|+|++|+.|+-+.|.||||||||+||++|+|+.+. .+|+
T Consensus 432 n~i~~e~v~l~tPt~------------------g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~--~~G~ 491 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN------------------GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS--TGGK 491 (659)
T ss_pred ceEEeeeeeecCCCC------------------CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc--CCCe
Confidence 589999999877632 35688999999999999999999999999999999999973 3799
Q ss_pred EEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc-----
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG----- 235 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----- 235 (737)
+.--.+.-. +.+-||||.|.+--+ |.||-+.|...- .....+...++++.+.|+.++|.|..+..=|
T Consensus 492 l~k~~~~~~-----~~lfflPQrPYmt~G-TLRdQvIYP~~~--~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~ 563 (659)
T KOG0060|consen 492 LTKPTDGGP-----KDLFFLPQRPYMTLG-TLRDQVIYPLKA--EDMDSKSASDEDILRILENVQLGHLLEREGGLDQQV 563 (659)
T ss_pred EEecccCCC-----CceEEecCCCCcccc-chhheeeccCcc--ccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchh
Confidence 875433211 336799999998887 999999886321 1111222345678888888888876543322
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 236 -DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 236 -~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
-+....||+||+||++.||.+.++|++-+|||.||++|...+..+.+.+++ .|.|.|-+.|+.+ +.+.=|.++-
T Consensus 564 ~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~ 638 (659)
T KOG0060|consen 564 DWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLR 638 (659)
T ss_pred hccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEE
Confidence 122346999999999999999999999999999999999999999988876 4899999999975 5677788888
Q ss_pred ecC
Q 036088 315 LSN 317 (737)
Q Consensus 315 L~~ 317 (737)
|+.
T Consensus 639 ~~g 641 (659)
T KOG0060|consen 639 MDG 641 (659)
T ss_pred ecC
Confidence 865
No 393
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.87 E-value=2e-23 Score=210.01 Aligned_cols=208 Identities=23% Similarity=0.319 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHHHHHHH-hhhHHHHHHHh
Q 036088 429 IEMMILSKRLMINSRRMPELF-VVRFATVFAAAVITAGLYWQLDNSPRGTQGRIGFFGFGITLIFFQC-SREIPVFLQER 506 (737)
Q Consensus 429 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~r~g~lf~~~~~~~~~~-~~~v~~~~~eR 506 (737)
+|++.|++|+++..+|||.+. ..+++..+++++++|.+|.+++++.++. ++.|++++.+...++.. ......+..||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999988555555 77787777766665433 34447789999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 036088 507 QIFIRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSFIALISGLVSH 586 (737)
Q Consensus 507 ~vf~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~ 586 (737)
..+.||+.++.|++.+|++||.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..+++.++|.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999887 67777778888888889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCcchHHHHHHHHhHh
Q 036088 587 VMVGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQSILQNEY 639 (737)
Q Consensus 587 ~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef 639 (737)
...+..+.+++..+++++||.++|.+.+|+|++|+.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999998876
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.85 E-value=1.5e-20 Score=183.39 Aligned_cols=212 Identities=22% Similarity=0.301 Sum_probs=161.1
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++++.|.|+.. .+++-|+|++++.|..+.++|.||||||||||+|+|.--.. .|.
T Consensus 12 ~aievsgl~f~y~~~-------------------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~ 70 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS-------------------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGV 70 (291)
T ss_pred ceEEEeccEEecccC-------------------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCe
Confidence 469999999999853 46999999999999999999999999999999999985433 599
Q ss_pred EEECCEeCCc-cc--ccceEEEEec----------CCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc
Q 036088 161 VTLNGEVLGS-KL--LKIISAYVMQ----------DDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR 227 (737)
Q Consensus 161 I~~~G~~~~~-~~--~~~~~~yV~Q----------~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 227 (737)
|.++|++.-. .. ......|+-- +-.+-...++.+.| |+... .. -+|-+++++.|++.
T Consensus 71 v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~g-----~d----p~Rre~LI~iLDId 140 (291)
T KOG2355|consen 71 VQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVGG-----DD----PERREKLIDILDID 140 (291)
T ss_pred EEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHH-hhccC-----CC----hhHhhhhhhheecc
Confidence 9999986421 10 0011122211 22333455665544 44321 11 14556677777664
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHH
Q 036088 228 SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRIL 306 (737)
Q Consensus 228 ~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~ 306 (737)
- .+....+|-|||+||.|++.|++.=++|+|||-|--||..++..+++.|++-.+ +|.|||..||-... +.
T Consensus 141 l-------~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le 212 (291)
T KOG2355|consen 141 L-------RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LE 212 (291)
T ss_pred c-------eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hh
Confidence 2 233345999999999999999999999999999999999999999999999876 48999999999764 67
Q ss_pred hhcceEEEecCCEEEeeCChhhHHH
Q 036088 307 SLLDRLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 307 ~~~D~v~lL~~G~iv~~G~~~~~~~ 331 (737)
....+++.++.|+++-.-+.+++.+
T Consensus 213 ~Wpthl~yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 213 TWPTHLVYIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred hcchhEEEecCCeeeeccccchhhh
Confidence 8899999999999997666555544
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.4e-21 Score=209.92 Aligned_cols=203 Identities=22% Similarity=0.264 Sum_probs=143.6
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
...|...|.+..|. .+.+|++-++++..|..++|+|+||+|||||||+|+. |
T Consensus 78 ~~Di~~~~fdLa~G--------------------~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~ 129 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG--------------------GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------G 129 (582)
T ss_pred ccceeeeeeeeeec--------------------chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------c
Confidence 34688888888886 4679999999999999999999999999999999997 2
Q ss_pred EEEECCEeCCcccccceEEEEecC-CCCCCCCCHHHHHHHhhhhcCCCCCcHH-HHHHHHHHHHHHcCCcccccccccCC
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQD-DLLYSMLTIEETLMFSAEFRLPRSLSKE-KKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
+|. |-++.+ ..+ --+++-. +.+-...++.+-+.--. .+... ...+....+|..+|.++... ..
T Consensus 130 ~v~--~f~veq-E~~--g~~t~~~~~~l~~D~~~~dfl~~e~------~l~~~~~l~ei~~~~L~glGFt~emq----~~ 194 (582)
T KOG0062|consen 130 QVS--GFHVEQ-EVR--GDDTEALQSVLESDTERLDFLAEEK------ELLAGLTLEEIYDKILAGLGFTPEMQ----LQ 194 (582)
T ss_pred CcC--ccCchh-hee--ccchHHHhhhhhccHHHHHHHHhhh------hhhccchHHHHHHHHHHhCCCCHHHH----hc
Confidence 222 222211 111 1133322 22333323333222111 11111 22334444888999875432 23
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 238 QHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
..+.||||-|-|+++||||..+|+||||||||+.||..+...+.+.|..+ +.|+|+++||- ..+-..|..|+.+++
T Consensus 195 pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr-~FLn~V~tdIIH~~~ 270 (582)
T KOG0062|consen 195 PTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDR-NFLNTVCTDIIHLEN 270 (582)
T ss_pred cccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccH-HHHHHHHHHHHHHhh
Confidence 44679999999999999999999999999999999999999999998876 37999999994 457778999999987
Q ss_pred CEE-EeeCChhhH
Q 036088 318 GQA-VCSEAPSNL 329 (737)
Q Consensus 318 G~i-v~~G~~~~~ 329 (737)
-++ .|.|+.++.
T Consensus 271 ~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 271 LKLDYYKGNYSQF 283 (582)
T ss_pred hhhhhhcCcHHHH
Confidence 665 356766554
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1e-20 Score=201.10 Aligned_cols=192 Identities=24% Similarity=0.318 Sum_probs=148.6
Q ss_pred CCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 036088 79 YPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLK 158 (737)
Q Consensus 79 ~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~ 158 (737)
.|..|-+.||+|.|+ +.++++++++|-|.-...+||+||||.||||||++|.|-++|. .
T Consensus 583 ~PPvLGlH~VtFgy~-------------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~--~ 641 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP-------------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN--D 641 (807)
T ss_pred CCCeeecccccccCC-------------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC--c
Confidence 355778888888876 3578999999999999999999999999999999999998865 6
Q ss_pred eEEEECCEeCCcccccceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 159 GTVTLNGEVLGSKLLKIISAYVMQDD--LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 159 G~I~~~G~~~~~~~~~~~~~yV~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
|+..- ..|-++|+..|+. .|-..-|.-|.|.-... ++. +.+...|-.+||...++|+-
T Consensus 642 GE~RK--------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTik-- 701 (807)
T KOG0066|consen 642 GELRK--------NHRLRIGWFDQHANEALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTIK-- 701 (807)
T ss_pred chhhc--------cceeeeechhhhhHHhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceEe--
Confidence 76542 2344578888863 45555677777653222 222 33556788899988888752
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
+..||||||-||++|.--+..|+||||||||++||.++...+.+.|++. ...||+++||-.. +.+---.++|+.
T Consensus 702 --ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE 775 (807)
T KOG0066|consen 702 --IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVE 775 (807)
T ss_pred --eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEc
Confidence 4579999999999999999999999999999999999999999888876 3469999999653 333333566665
Q ss_pred C
Q 036088 317 N 317 (737)
Q Consensus 317 ~ 317 (737)
+
T Consensus 776 ~ 776 (807)
T KOG0066|consen 776 N 776 (807)
T ss_pred c
Confidence 4
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=2.4e-20 Score=190.51 Aligned_cols=169 Identities=20% Similarity=0.237 Sum_probs=109.8
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-----------------cceEEEE--CCEeCCcccccceEE
Q 036088 118 LDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR-----------------LKGTVTL--NGEVLGSKLLKIISA 178 (737)
Q Consensus 118 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~-----------------~~G~I~~--~G~~~~~~~~~~~~~ 178 (737)
++++.+.+.+| +.+|+|||||||||||++|.-.+.... .++.|.+ ++.+. ....+..+.
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~-~~~~~n~~~ 91 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPG-NIQVDNLCQ 91 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCC-ccccCCceE
Confidence 35666666666 889999999999999999876542110 1111111 11000 011222233
Q ss_pred EEecCC-CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-cccccccccCCCCCCCCHHHHHHHHHHHHH
Q 036088 179 YVMQDD-LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-RSAAMTIIGDEQHRGVSGGERRRVSIGVDI 256 (737)
Q Consensus 179 yV~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL 256 (737)
+++|+. .-+..+++.|.+ ..++- .+.. +..+..||||||||+.++++|
T Consensus 92 ~~~q~~~~~~~~~~~~e~l-------------------------~~~~~~~~~~-----~~~~~~LS~G~~q~~~i~~~l 141 (213)
T cd03277 92 FLPQDRVGEFAKLSPIELL-------------------------VKFREGEQLQ-----ELDPHHQSGGERSVSTMLYLL 141 (213)
T ss_pred EEchHHHHHHHhCChHhHh-------------------------eeeecCCCcc-----ccchhhccccHHHHHHHHHHH
Confidence 555543 223344444333 11110 0111 223457999999998877554
Q ss_pred ----hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C-cEEEEEecCCcHHHHhhcc--eEEEecCCE
Q 036088 257 ----IHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-G-SIVIMSIHQPSHRILSLLD--RLIFLSNGQ 319 (737)
Q Consensus 257 ----~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g-~tvi~~~H~~~~~i~~~~D--~v~lL~~G~ 319 (737)
+.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+... +.+.+| +|++|++|+
T Consensus 142 a~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 142 SLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEEecCc
Confidence 5899999999999999999999999999999876 5 479999999754 566776 788888886
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.83 E-value=2.8e-20 Score=188.25 Aligned_cols=147 Identities=15% Similarity=0.125 Sum_probs=109.4
Q ss_pred ceeeeeEEEecCc-EEEEEcCCCCcHHHHHHHHH--------cCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCC
Q 036088 117 LLDDISGVASEGE-ITAILGASGSSKTTLMDAIA--------GRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLY 187 (737)
Q Consensus 117 iL~~vs~~i~~Ge-~~aI~GpsGaGKSTLL~~L~--------G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~ 187 (737)
-.-++|+++.+|+ +++|.|||||||||||+.|+ |...|. ... ..++|+.|.-.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~--~~~--------------~~~~~~~~~~~-- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA--AEG--------------SSLPVFENIFA-- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc--ccc--------------ccCcCccEEEE--
Confidence 4568999999995 89999999999999999998 432211 000 01233333211
Q ss_pred CCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 036088 188 SMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDE 267 (737)
Q Consensus 188 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDE 267 (737)
.++..+..+ .....+|+|||||+.|+++ +.+|+++++||
T Consensus 78 -----------------------------------~lg~~~~l~-----~~~s~fs~g~~~~~~i~~~-~~~p~llllDE 116 (200)
T cd03280 78 -----------------------------------DIGDEQSIE-----QSLSTFSSHMKNIARILQH-ADPDSLVLLDE 116 (200)
T ss_pred -----------------------------------ecCchhhhh-----cCcchHHHHHHHHHHHHHh-CCCCcEEEEcC
Confidence 011111111 1123599999999999987 48999999999
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeC
Q 036088 268 PISGLDSTSAFNVV-KVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSE 324 (737)
Q Consensus 268 PTsgLD~~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 324 (737)
||+|||+.....+. ..++.+.+.|.++|++||+. ++.+++|+++.|++|++.+.+
T Consensus 117 p~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 117 LGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99999999999996 46888877789999999983 578999999999999998874
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.3e-19 Score=197.62 Aligned_cols=203 Identities=20% Similarity=0.297 Sum_probs=157.0
Q ss_pred CCCCceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 036088 77 PNYPLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR 156 (737)
Q Consensus 77 ~~~~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~ 156 (737)
...|..+++.+|++.|.... -+++.+++..++.-+..+++|+||+||||++|++.|-..|.
T Consensus 357 ~~~~p~l~i~~V~f~y~p~~------------------y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~- 417 (582)
T KOG0062|consen 357 VLSPPNLRISYVAFEYTPSE------------------YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT- 417 (582)
T ss_pred cCCCCeeEEEeeeccCCCcc------------------hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc-
Confidence 34566899999999987431 16889999999999999999999999999999999987643
Q ss_pred cceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 157 LKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 157 ~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
.|.+.+.+ |.+++|-.|...=+-.+.|.+-- +-...+ | +.+ ++.++.-+..+||+... ..
T Consensus 418 -rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-p-G~~----~ee~r~hl~~~Gl~g~l----a~ 477 (582)
T KOG0062|consen 418 -RGIVGRHP--------RLRIKYFAQHHVDFLDKNVNAVD-FMEKSF-P-GKT----EEEIRRHLGSFGLSGEL----AL 477 (582)
T ss_pred -cceeeecc--------cceecchhHhhhhHHHHHhHHHH-HHHHhC-C-CCC----HHHHHHHHHhcCCCchh----hh
Confidence 68776543 44578888875444344444432 222222 1 222 34567778899997432 12
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
....+||||||-||++|.....+|.+|+|||||+.||-.+-..+.+.|+.. +..||+++|+-+ .+-..|+.+++.+
T Consensus 478 ~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve 553 (582)
T KOG0062|consen 478 QSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVE 553 (582)
T ss_pred ccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEc
Confidence 235679999999999999999999999999999999999999888888876 346999999964 5888999999999
Q ss_pred CCEEEe
Q 036088 317 NGQAVC 322 (737)
Q Consensus 317 ~G~iv~ 322 (737)
+|++.-
T Consensus 554 ~g~vt~ 559 (582)
T KOG0062|consen 554 DGKVTP 559 (582)
T ss_pred CCcEEe
Confidence 999864
No 400
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.80 E-value=1.2e-19 Score=183.47 Aligned_cols=136 Identities=19% Similarity=0.302 Sum_probs=105.3
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
+.+++|+++.. |++++|+||||||||||||+|+|... +...|.++... .+++|.+.+|+.+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccchh
Confidence 56889988664 79999999999999999999998642 22345554321 36778888999999999
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDS 274 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~ 274 (737)
++.++... .. ...+++.++++.+++ .+|+++++||||+|+|+
T Consensus 79 ~l~~~~s~------~~-~e~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGISY------FY-AELRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccCh------HH-HHHHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 99875421 12 223567888877752 68999999999999999
Q ss_pred HHHHHHH-HHHHHHHHcCcEEEEEecCCcH
Q 036088 275 TSAFNVV-KVLKQIAKSGSIVIMSIHQPSH 303 (737)
Q Consensus 275 ~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~ 303 (737)
.....+. ..++++.+.|.|+|++||++..
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~~ 150 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLEL 150 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHH
Confidence 9998775 4788888778999999999753
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.80 E-value=9.2e-19 Score=173.86 Aligned_cols=74 Identities=26% Similarity=0.308 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 242 VSGGERRRVSIGVDII----HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
||||||||++||++++ .+|+++++||||++||+.....+.+.|++++++|.++|+++|++. ..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999974 4678999999975
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.79 E-value=1.5e-19 Score=194.32 Aligned_cols=171 Identities=27% Similarity=0.410 Sum_probs=127.5
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE-----------EECCEeCCcccccc------eEEEEecC----
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV-----------TLNGEVLGSKLLKI------ISAYVMQD---- 183 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I-----------~~~G~~~~~~~~~~------~~~yV~Q~---- 183 (737)
.++|++++|+||||-||||-+|+|+|.+.|. =|+- .+-|..+.. .+++ ++..=+|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PN--LG~~~~pp~wdeVi~~FrGtELq~-YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPN--LGRYEDPPSWDEVIKRFRGTELQN-YFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccC--CCCCCCCCCHHHHHHHhhhhHHHH-HHHHHHcCCcceecchHHHHHH
Confidence 4699999999999999999999999998864 2321 111111110 0111 11122332
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE
Q 036088 184 DLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILL 263 (737)
Q Consensus 184 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~il 263 (737)
+..+.. ||.|-|.-. ..+-+.+++++.|+|.+..|+.+. .|||||-||++||.+++++++++
T Consensus 174 Pk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 174 PKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEE
Confidence 233333 676665421 122468899999999998887765 59999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 264 FLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 264 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
++|||||-||...+....+.+++|++.+++||++-||+.- +--++|-|.++..
T Consensus 236 ~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 236 FFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred EEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH-HHHhhheeEEEec
Confidence 9999999999999999999999999889999999999752 4446788877753
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.79 E-value=4.6e-19 Score=188.39 Aligned_cols=216 Identities=22% Similarity=0.340 Sum_probs=155.4
Q ss_pred eEEEEeEEEEEecCcccCCCCC-------ccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLP-------FVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK 154 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~-------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~ 154 (737)
-+.++|++..+..... ...++ .+-+.........+|+|||++++||++++|+|+|||||||||++|.|....
T Consensus 357 p~~~~~v~k~faS~ld-~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~ 435 (593)
T COG2401 357 PIKFKNVTKTFASELD-IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKG 435 (593)
T ss_pred ccccceeeeeeeeeee-cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhc
Confidence 3678888887753211 00000 001122334467899999999999999999999999999999999997541
Q ss_pred ------CCcceEEEECCEeCCcccccceEEEEecC-CCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc
Q 036088 155 ------QRLKGTVTLNGEVLGSKLLKIISAYVMQD-DLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR 227 (737)
Q Consensus 155 ------~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 227 (737)
.|.+|.|.+--.. ..+.+|-+ +.-|..-|+.|.+.- ... +-....++|...||.
T Consensus 436 ~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~~~tilehl~s-----~tG------D~~~AveILnraGls 496 (593)
T COG2401 436 RGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFGEVTILEHLRS-----KTG------DLNAAVEILNRAGLS 496 (593)
T ss_pred ccccccCCCCCceeccccc--------hhhccCcccccccCchhHHHHHhh-----ccC------chhHHHHHHHhhccc
Confidence 2457777653211 22445554 233445677777632 111 123467899999997
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHH
Q 036088 228 SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRIL 306 (737)
Q Consensus 228 ~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 306 (737)
+.. .-....+.||-|||.|+.||.++...|.+++.||--|.||+.++..+.+-|.+++++ |.|++++||+|.- +-
T Consensus 497 DAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~ 572 (593)
T COG2401 497 DAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GN 572 (593)
T ss_pred hhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-Hh
Confidence 532 112445679999999999999999999999999999999999999999999999975 9999999999863 44
Q ss_pred hh-cceEEEecCCEEE
Q 036088 307 SL-LDRLIFLSNGQAV 321 (737)
Q Consensus 307 ~~-~D~v~lL~~G~iv 321 (737)
.+ -|+++++.-|++.
T Consensus 573 AL~PD~li~vgYg~v~ 588 (593)
T COG2401 573 ALRPDTLILVGYGKVP 588 (593)
T ss_pred ccCCceeEEeeccccc
Confidence 55 6999988877654
No 404
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=3e-18 Score=195.34 Aligned_cols=127 Identities=28% Similarity=0.467 Sum_probs=105.8
Q ss_pred CCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEEEe
Q 036088 190 LTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDP---ILLFLD 266 (737)
Q Consensus 190 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p---~illLD 266 (737)
|||.|...|.... ..-.+.-+.|..+||.-. .+| ....+|||||.|||-+|.+|..+. .+++||
T Consensus 784 MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLD 850 (935)
T COG0178 784 MTVEEALEFFEAI---------PKIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYILD 850 (935)
T ss_pred ccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEeC
Confidence 6777777775421 123345567777898743 344 455679999999999999999887 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec------CCEEEeeCChhhHHH
Q 036088 267 EPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS------NGQAVCSEAPSNLSQ 331 (737)
Q Consensus 267 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~~ 331 (737)
|||+||......++++.|.+|.++|.|||++-|.+. +.+.||.|+-|. .|+|++.|+|+++.+
T Consensus 851 EPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 851 EPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999974 789999999994 479999999999865
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=1.9e-18 Score=215.95 Aligned_cols=201 Identities=24% Similarity=0.269 Sum_probs=147.5
Q ss_pred cceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHH-c----CCC--CCCcceEEEECCEeCCcc-------------cccc
Q 036088 116 LLLDDISGVASEGEITAILGASGSSKTTLMDAIA-G----RIS--KQRLKGTVTLNGEVLGSK-------------LLKI 175 (737)
Q Consensus 116 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~-G----~~~--~~~~~G~I~~~G~~~~~~-------------~~~~ 175 (737)
.=|+||+.+|+-|.+++|.|.||||||||++-.. - .+. .....--|.+|..|+... .+|+
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 3589999999999999999999999999997443 1 100 012234477776665320 0111
Q ss_pred e-------------------------------EEEEecCCCCC--------------------------------CCCCH
Q 036088 176 I-------------------------------SAYVMQDDLLY--------------------------------SMLTI 192 (737)
Q Consensus 176 ~-------------------------------~~yV~Q~~~l~--------------------------------~~lTV 192 (737)
. -|++.=+-.++ -.|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 0 02221111111 23677
Q ss_pred HHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC---CcEEEEeCCC
Q 036088 193 EETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHD---PILLFLDEPI 269 (737)
Q Consensus 193 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~---p~illLDEPT 269 (737)
.|.+.|... ..+-.+.-+.|+.+||.... .| ....+|||||.||+-||.+|..+ +.+++|||||
T Consensus 1664 ~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1664 EEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred HHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 777776421 12234566788899997542 44 34557999999999999999976 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec------CCEEEeeCChhhHHH
Q 036088 270 SGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS------NGQAVCSEAPSNLSQ 331 (737)
Q Consensus 270 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~~ 331 (737)
+||++.....+++.|++|.+.|.|||++.|++. +.+.||.|+-|. .|+|++.|+|+++.+
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999974 688899999994 479999999999864
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.1e-18 Score=183.22 Aligned_cols=76 Identities=25% Similarity=0.348 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 241 GVSGGERRRVSIGVDIIH----DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.||||||||+++|++++. +|++++|||||++||+.....+.+.|+++.+ +.|+|+++|++. +.+.+|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999865 789999999975 568999999998
Q ss_pred CCE
Q 036088 317 NGQ 319 (737)
Q Consensus 317 ~G~ 319 (737)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 753
No 407
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.78 E-value=6.6e-19 Score=191.72 Aligned_cols=181 Identities=18% Similarity=0.290 Sum_probs=133.2
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
..+...++|.|++|-.+.|.||||||||+|.++|+|+.+. ..|...+ + .+..+-|+||.|++-.+ |.||
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv--y~g~L~~------P--~~~~mFYIPQRPYms~g-tlRD 563 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV--YNGLLSI------P--RPNNIFYIPQRPYMSGG-TLRD 563 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc--cCCeeec------C--CCcceEeccCCCccCcC-cccc
Confidence 4588999999999999999999999999999999999863 2444332 1 23347899999987744 8888
Q ss_pred HHHHhhhhc--CCCCCcHHHHHHHHHHHHHHcCCcccccccccCC----CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 036088 195 TLMFSAEFR--LPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE----QHRGVSGGERRRVSIGVDIIHDPILLFLDEP 268 (737)
Q Consensus 195 ~l~~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~----~~~~LSGGqrqRvsiA~aL~~~p~illLDEP 268 (737)
-+-|.-... ...+.+ ++..+.+|+.+.|++....-.|-+ ...-||||||||+++||.+.++|+.-+|||.
T Consensus 564 QIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEc 639 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDEC 639 (728)
T ss_pred eeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhh
Confidence 776642110 001222 344666777777766554333211 1234999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 269 ISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 269 TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
||+..+..+..+.+..++ .|.+.|-++|+|+ +.++-.+++-.
T Consensus 640 TsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~h~~ll~~ 681 (728)
T KOG0064|consen 640 TSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKYHTHLLEF 681 (728)
T ss_pred hcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHHHHHHHhc
Confidence 999999888888877664 4899999999997 45554444433
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.77 E-value=5.3e-19 Score=181.65 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=115.8
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEE-EEecCCCCCCCCCH
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISA-YVMQDDLLYSMLTI 192 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~-yV~Q~~~l~~~lTV 192 (737)
.+.+.+|++++..+|++++|.||||+||||||+.++-. .+...+| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~---- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP---- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe----
Confidence 35689999999999999999999999999999999821 0111122 5555432211
Q ss_pred HHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCcEEEEeCC--
Q 036088 193 EETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDI--IHDPILLFLDEP-- 268 (737)
Q Consensus 193 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL--~~~p~illLDEP-- 268 (737)
.++++++.+|+.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 -----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~ 120 (222)
T cd03285 72 -----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGR 120 (222)
T ss_pred -----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcC
Confidence 133445556665322 246999999999999999 899999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCC
Q 036088 269 -ISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEA 325 (737)
Q Consensus 269 -TsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 325 (737)
|++||+..... ..++.+.+ .|.++|++||+ .++.+++|++..+++|++.+.+.
T Consensus 121 gT~~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 121 GTSTYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCChHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 99999988754 33355544 48899999997 46889999999999999987664
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.76 E-value=2.2e-18 Score=168.54 Aligned_cols=74 Identities=27% Similarity=0.416 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 242 VSGGERRRVSIGVDIIH----DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++. +.+.+|+++.|..
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 99999999999999987 78999999999999999999999999998666889999999975 5678999999964
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=2.8e-17 Score=197.81 Aligned_cols=136 Identities=26% Similarity=0.429 Sum_probs=109.5
Q ss_pred CCCCCHHHHHHHhhhhcCCCC---Cc---HHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 036088 187 YSMLTIEETLMFSAEFRLPRS---LS---KEKKRKRVDALIDQLGLRSA-AMTIIGDEQHRGVSGGERRRVSIGVDIIHD 259 (737)
Q Consensus 187 ~~~lTV~e~l~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~ 259 (737)
+..+||.|.+.|.-.+..+.. .. -.+..++++ .|+.+||.+. .|+.+ ..|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 446899999998544322110 00 012345554 7888899754 55554 46999999999999999999
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe------cCCEEEeeCChhhHH
Q 036088 260 P--ILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL------SNGQAVCSEAPSNLS 330 (737)
Q Consensus 260 p--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 330 (737)
| ++++|||||+|||+.....+++.|++++++|.|||+++|++.. + ..||+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 9999999999999999999999999998889999999999863 4 579999999 899999999998874
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=5.8e-17 Score=194.78 Aligned_cols=135 Identities=27% Similarity=0.409 Sum_probs=106.1
Q ss_pred CCCCHHHHHHHhhhhcCCCCCcH------HHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 036088 188 SMLTIEETLMFSAEFRLPRSLSK------EKKRKRVDALIDQLGLRSA-AMTIIGDEQHRGVSGGERRRVSIGVDIIHDP 260 (737)
Q Consensus 188 ~~lTV~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p 260 (737)
..|||.|.+.|...+........ .+..+++ +.|..+||... .++ ...+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r-----~~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSR-----AAGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCC-----CcCcCCHHHHHHHHHHHHHhhCC
Confidence 36899999988765432210000 1112233 33667788643 333 34579999999999999999986
Q ss_pred --cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe------cCCEEEeeCChhhHH
Q 036088 261 --ILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL------SNGQAVCSEAPSNLS 330 (737)
Q Consensus 261 --~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 330 (737)
+++||||||+|||+.....+++.|+++.++|.|||+++|++.. + ..||+|++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~-i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEET-I-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-H-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 8999999999999999999999999998889999999999753 4 599999999 899999999998864
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.3e-16 Score=167.10 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhc-
Q 036088 240 RGVSGGERRRVSIGVDII---------HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLL- 309 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~- 309 (737)
.-+|+||||+++||++|+ .+|++++|||||++||+..+..+.+.|+++. . +++++|+.. .+.+++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q-~ii~~~~~~-~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---Q-TFVTTTDLA-DFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---C-EEEEeCCch-hccchhc
Confidence 448999999999999985 7999999999999999999999999998753 3 555555543 356666
Q ss_pred --ceEEEecCCEE
Q 036088 310 --DRLIFLSNGQA 320 (737)
Q Consensus 310 --D~v~lL~~G~i 320 (737)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 68999999985
No 413
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.70 E-value=1.4e-17 Score=168.72 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVK-VLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.++++++ |++.+.+++.+|+++++||||+|+|+.....+.. .++.+.+.+.++|++||++ ++.+.+|++..++.|+
T Consensus 91 ~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~ 167 (202)
T cd03243 91 TFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLH 167 (202)
T ss_pred eHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEE
Confidence 3565555 5777788899999999999999999998888765 5677776789999999995 4678999999999999
Q ss_pred EEeeCChhhH
Q 036088 320 AVCSEAPSNL 329 (737)
Q Consensus 320 iv~~G~~~~~ 329 (737)
+...++..++
T Consensus 168 ~~~~~~~~~~ 177 (202)
T cd03243 168 MEELITTGGL 177 (202)
T ss_pred EEEEecCCee
Confidence 9988766444
No 414
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=9e-18 Score=178.87 Aligned_cols=202 Identities=24% Similarity=0.268 Sum_probs=142.4
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc----------cccceEEEEecC
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK----------LLKIISAYVMQD 183 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~----------~~~~~~~yV~Q~ 183 (737)
++.++.|-|+.|-.|..++++||||-||||||+.|+.+--.-|..=.|++..+.+-.. .-.++...+..+
T Consensus 276 Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee 355 (807)
T KOG0066|consen 276 GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEE 355 (807)
T ss_pred cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHH
Confidence 4678999999999999999999999999999999998743212234455554443110 000111111111
Q ss_pred C-----CCCCCCCHHHHHHH-hhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 036088 184 D-----LLYSMLTIEETLMF-SAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDII 257 (737)
Q Consensus 184 ~-----~l~~~lTV~e~l~~-~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~ 257 (737)
+ .--...|+.|-+.- +..+|. +.....++++..+|.-||.+.-.. +.....+|||-|-||++||||.
T Consensus 356 ~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ----~rPt~kFSGGWRMRvSLARALf 428 (807)
T KOG0066|consen 356 AKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQ----ERPTTKFSGGWRMRVSLARALF 428 (807)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHh----cCCccccCCceeeehhHHHHHh
Confidence 1 11123466666642 223332 222334567888999898875432 2334569999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEe-eCCh
Q 036088 258 HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVC-SEAP 326 (737)
Q Consensus 258 ~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~-~G~~ 326 (737)
.+|.+|.|||||+.||-.+...+-+.|+.+. +|.++++||-. .+-..|..|+.|++-++.| .|..
T Consensus 429 lEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 429 LEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred cCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhhhhhhhhhcchH
Confidence 9999999999999999999998999998885 59999999976 4788999999999887754 4543
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.66 E-value=1.7e-16 Score=160.98 Aligned_cols=142 Identities=21% Similarity=0.266 Sum_probs=102.2
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
++.+.+|+++++++|++++|+||||+|||||++++++..- +.+.-.|| +.....+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccCh
Confidence 4579999999999999999999999999999999998731 11111234 3344556777
Q ss_pred HHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 036088 194 ETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLD 273 (737)
Q Consensus 194 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD 273 (737)
|+|... ++..+..+ ...+.+|+|++|+ +.+.+++.+|++++||||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~-----~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSME-----RNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccc-----hhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 766432 12221111 1223589999965 56677899999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHcCcEEEEEecCCcHHHHhhc
Q 036088 274 STSAFNV-VKVLKQIAKSGSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 274 ~~~~~~i-~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 309 (737)
+.....+ ...++.+.+.|.++|++||+.. +.+.+
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~--l~~~~ 157 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRD--IAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHH--HHHHh
Confidence 9876665 4567778777999999999964 34443
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.60 E-value=3e-15 Score=153.26 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=109.6
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
+.+.+|++++.++ ++++|.||||+|||||||.+++..- -|+ .|..+.. .+..++++.| +++.+++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~----l~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL----LAQ---IGSFVPA--SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH----Hhc---cCCeecc--ccceecceee---EeccCCchh
Confidence 4589999999987 9999999999999999999987532 121 1222221 1234566654 667778877
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH--HHHHHHHHHHHHhhCCcEEEEeCC---C
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSG--GERRRVSIGVDIIHDPILLFLDEP---I 269 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG--GqrqRvsiA~aL~~~p~illLDEP---T 269 (737)
++..+. |. .|.++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g~------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGGR------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccCc------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 775431 11 133344444444679999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 270 SGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 270 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
+++|.... ....++.+.+. +.++|++||+. ++.+++|++..+.+|++...+..+++.
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 88887542 23455555555 88999999995 578899998888889988877666553
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.59 E-value=5.3e-15 Score=155.77 Aligned_cols=140 Identities=20% Similarity=0.198 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCc----ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS----KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRL 204 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~ 204 (737)
.-++|+||||||||||+++|+|.+.++ +|+|.++|+++.. ......+++++|++ +...++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~--~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG--ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC--CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch-------
Confidence 578999999999999999999998755 8999999999852 22334457888865 334455555421
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 036088 205 PRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVL 284 (737)
Q Consensus 205 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L 284 (737)
+.+ | .....+..+|+++++|||++ ...+...+
T Consensus 182 -----k~~--------------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -----KAE--------------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -----HHH--------------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 000 0 01222335999999999974 23344555
Q ss_pred HHHHHcCcEEEEEecCCcHHHH------------hhcceEEEecCCEEEeeCChhhH
Q 036088 285 KQIAKSGSIVIMSIHQPSHRIL------------SLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 285 ~~l~~~g~tvi~~~H~~~~~i~------------~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
+.+ ++|.++|+++|++..+-. .+|||+++|++|+ ..|.++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 369999999998643212 5689999999887 56666544
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.51 E-value=1e-13 Score=148.55 Aligned_cols=180 Identities=24% Similarity=0.314 Sum_probs=135.6
Q ss_pred cccccceeeeeEEEecCc-----EEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCC
Q 036088 112 KKTKLLLDDISGVASEGE-----ITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLL 186 (737)
Q Consensus 112 ~~~~~iL~~vs~~i~~Ge-----~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l 186 (737)
.+.+..+-+..+.|+.|+ ++..+|.||.|||||+++++|+++|+. .|+|-. -.++|=||.-.-
T Consensus 346 p~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~-~~e~p~-----------lnVSykpqkisp 413 (592)
T KOG0063|consen 346 PKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE-GGEIPV-----------LNVSYKPQKISP 413 (592)
T ss_pred CcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc-cCcccc-----------cceeccccccCc
Confidence 345567778888888775 789999999999999999999988652 334321 124677776433
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 036088 187 YSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLD 266 (737)
Q Consensus 187 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLD 266 (737)
-..-|||+.+.--.+- .-...+.+.++++-|.+++..|.-| .+|||||.|||++|..|-..+++++.|
T Consensus 414 K~~~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliD 481 (592)
T KOG0063|consen 414 KREGTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLID 481 (592)
T ss_pred cccchHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEec
Confidence 3345999887532111 1122356788888888887776655 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 267 EPISGLDSTSAFNVVKVLKQIA-KSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 267 EPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
||.+-||++.+..--+.+++.- +.++|-.++-|+.-- .--++||+++..
T Consensus 482 EpsAylDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 482 EPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred CchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence 9999999999998888888864 557899999999643 224789888764
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.48 E-value=1.5e-12 Score=143.47 Aligned_cols=77 Identities=19% Similarity=0.361 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhc-
Q 036088 240 RGVSGGERRRVSIGVDII---------HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLL- 309 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~- 309 (737)
..+|+||+|++.||+.|+ .+|+||+||||+++||+..+..+++.|.++ +..+++++|++.. +...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhhc
Confidence 459999999999999886 799999999999999999999999988764 3578889998653 44443
Q ss_pred -ceEEEecCCEE
Q 036088 310 -DRLIFLSNGQA 320 (737)
Q Consensus 310 -D~v~lL~~G~i 320 (737)
++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57899999986
No 420
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.46 E-value=4.6e-14 Score=141.18 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVV-KVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~-~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+.--+..
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 358887776333332 34599999999999999999887765 556777764 88999999996 47788876444444
Q ss_pred CEEEe
Q 036088 318 GQAVC 322 (737)
Q Consensus 318 G~iv~ 322 (737)
+++..
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 44443
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.45 E-value=5.4e-14 Score=144.20 Aligned_cols=88 Identities=27% Similarity=0.470 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 036088 215 KRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDII----HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS 290 (737)
Q Consensus 215 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 290 (737)
+.+.+.++..++... .+|||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 445666666655432 59999999999997664 47899999999999999999999999999875
Q ss_pred CcEEEEEecCCcHHHHhhcceEEEec
Q 036088 291 GSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 291 g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
+.-+|++||++. +++.+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~~--~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNPE--MFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-HH--HHTT-SEEEEEE
T ss_pred cccccccccccc--cccccccccccc
Confidence 467999999964 799999887763
No 422
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.44 E-value=1.7e-11 Score=127.09 Aligned_cols=197 Identities=14% Similarity=0.068 Sum_probs=140.1
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCC-CCC--cccchhhhHHHHHHHHHH-H-HHH-hhhHHH-HHHHhHHH
Q 036088 437 RLMINSRRMPELFVVRFATVFAAAVITAGLYWQL-DNS--PRGTQGRIGFFGFGITLI-F-FQC-SREIPV-FLQERQIF 509 (737)
Q Consensus 437 R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~-~~~--~~~~~~r~g~lf~~~~~~-~-~~~-~~~v~~-~~~eR~vf 509 (737)
|+++...|||..+..-+++-+++.+++|.++-.. +.. ..+. +...++.-.+..+ . ..+ ...... .-+|+.++
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~-~y~~fl~~G~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGV-DYMTYLVPGIVAMTVFNMSFFSGISVIWDRQFGFL 79 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCC-cHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCHH
Confidence 6678899999999888999999999998887543 111 1121 2211121111111 1 111 111111 12233333
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Q 036088 510 IRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSFIALISGLVSHVMV 589 (737)
Q Consensus 510 ~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~ 589 (737)
.|=.. .=.++..|+++|.+.+++..++..+++..+.|++.++.. ..++.+++.+++..++..++|.++++..++.+.
T Consensus 80 ~~~~~-~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~ 156 (236)
T TIGR01247 80 KEILV-APASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEG 156 (236)
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33332 223688999999999999999999999999998877554 345555555556666778999999999999998
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCcchHHHHHHHHh
Q 036088 590 GFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQSILQN 637 (737)
Q Consensus 590 a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~n 637 (737)
+..+.+.+..+++.+||.+.|.+.+|+|++|+.|++|++|+.+++-..
T Consensus 157 ~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~ 204 (236)
T TIGR01247 157 FQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYY 204 (236)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHH
Confidence 888888899999999999999999999999999999999999986543
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.44 E-value=1.4e-13 Score=124.26 Aligned_cols=74 Identities=15% Similarity=0.006 Sum_probs=62.6
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCc---ccccceEEEEecCCCCCCCCC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLT 191 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lT 191 (737)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.++.. ...++.++|++|+ +|.. |
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~-t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI-R 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-h
Confidence 46899999999999999999999999999999986 5899999998753 3355667888887 5654 9
Q ss_pred HHHHHHHh
Q 036088 192 IEETLMFS 199 (737)
Q Consensus 192 V~e~l~~~ 199 (737)
|+|||.++
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999873
No 424
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.40 E-value=1.6e-12 Score=132.84 Aligned_cols=132 Identities=17% Similarity=0.139 Sum_probs=86.9
Q ss_pred cceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHc--CCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCC-CCCH
Q 036088 116 LLLDDISGVASEGEITAILGASGSSKTTLMDAIAG--RISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYS-MLTI 192 (737)
Q Consensus 116 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G--~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~-~lTV 192 (737)
.+-+|+++.=..+.+++|.||||+|||||||.++. .+. ..|...... .-.++|..|....+. ..++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la---~~G~~v~a~--------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA---HIGSFVPAD--------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH---hCCCeeEcC--------CcEEeeeeeeeeeeCCccCh
Confidence 35566665422237999999999999999999984 321 134433211 122466666422111 1111
Q ss_pred HHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 036088 193 EETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGL 272 (737)
Q Consensus 193 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgL 272 (737)
.+++ +.. .-|-||++++++++.+|+++|||||++|+
T Consensus 86 ~~~~------------------------------S~f--------------~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 86 SSGQ------------------------------SAF--------------MIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred hhcc------------------------------chH--------------HHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 1111 110 23679999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHHc---CcEEEEEecCCc
Q 036088 273 DSTSAFNV-VKVLKQIAKS---GSIVIMSIHQPS 302 (737)
Q Consensus 273 D~~~~~~i-~~~L~~l~~~---g~tvi~~~H~~~ 302 (737)
|+.....+ ...++++.+. +.++|++||++.
T Consensus 122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 99765554 5688888764 248999999965
No 425
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.40 E-value=4.8e-13 Score=159.60 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=91.2
Q ss_pred eeEEEecC-cEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCC-CCCCCCHHHHHHH
Q 036088 121 ISGVASEG-EITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDL-LYSMLTIEETLMF 198 (737)
Q Consensus 121 vs~~i~~G-e~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~-l~~~lTV~e~l~~ 198 (737)
+|+.+.+| ++++|.||||+|||||||.|+|..-. ...| .+||.... .++ +.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G------------------~~Vpa~~~~~~~---~~d~i~- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG------------------IPIPANEHSEIP---YFEEIF- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC------------------CCccCCcccccc---chhhee-
Confidence 68888877 89999999999999999999987210 0112 13443321 111 111110
Q ss_pred hhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 036088 199 SAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAF 278 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~ 278 (737)
. .+... +.+. ...+.+|+|+++++.|++.+ .+|+++|+|||++|+|+....
T Consensus 371 ~-------~i~~~------~si~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 A-------DIGDE------QSIE---------------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred e-------ecChH------hHHh---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 0 00000 0111 11235999999999998876 899999999999999999999
Q ss_pred HH-HHHHHHHHHcCcEEEEEecCCcH
Q 036088 279 NV-VKVLKQIAKSGSIVIMSIHQPSH 303 (737)
Q Consensus 279 ~i-~~~L~~l~~~g~tvi~~~H~~~~ 303 (737)
.+ ...|+.+.+.|.++|++||+...
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHHH
Confidence 98 57888888789999999999653
No 426
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.33 E-value=4.3e-11 Score=121.64 Aligned_cols=118 Identities=18% Similarity=0.132 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 036088 519 RVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSFIALISGLVSHVMVGFIIVACLL 598 (737)
Q Consensus 519 ~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~a~~~~~~~~ 598 (737)
+.+.++++|.+..++..+++++++..+.|++.|++.. +++.+++.+++..++..++|.++++++++...+ +...++
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 5667899999999999999999999999999999864 466677777777888889999999999876543 344455
Q ss_pred HHHHHhcccccCCCCccchhhhhhccCcchHHHHHHHHhHhc
Q 036088 599 GYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQSILQNEYG 640 (737)
Q Consensus 599 ~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~ 640 (737)
.+.++++|.+.|.+.+|+|++|+.|++|++|+.+++-...++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~ 175 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISG 175 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhC
Confidence 567778999999999999999999999999999998766654
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.33 E-value=1.9e-12 Score=132.30 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 036088 245 GERRRVSIGVDIIHDPILLFLDEPI-----SGLDSTSAFNVVKVLKQIAK 289 (737)
Q Consensus 245 GqrqRvsiA~aL~~~p~illLDEPT-----sgLD~~~~~~i~~~L~~l~~ 289 (737)
-|++++.||++++.+|+++++|||| +|||+.....+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999975
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.33 E-value=1.1e-11 Score=127.40 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=88.6
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
+.+.+|+++.+.+|++++|.||||+||||+|+++++..-. ...|..... +.. .++|..| ++..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-a~~G~~v~a-~~~-------~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-AQIGSFVPA-SSA-------TLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-HhCCCEEEc-Cce-------EEeccce---EEEEecCcc
Confidence 5689999999999999999999999999999999994211 224554322 111 1122211 111111111
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC--HHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVS--GGERRRVSIGVDIIHDPILLFLDEPISGL 272 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--GGqrqRvsiA~aL~~~p~illLDEPTsgL 272 (737)
++. .++| ..|-+|++-...-+.+|+++|||||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0111 12334444444455689999999999999
Q ss_pred CHHHHHHH-HHHHHHHHHc-CcEEEEEecCCcHHHHhhc
Q 036088 273 DSTSAFNV-VKVLKQIAKS-GSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 273 D~~~~~~i-~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 309 (737)
|+.....+ ...++.+.+. +.++|++||++. +.++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~ 160 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEIL 160 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHH
Confidence 97777765 5677777776 889999999975 44444
No 429
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.31 E-value=4.3e-10 Score=116.44 Aligned_cols=189 Identities=10% Similarity=0.078 Sum_probs=122.7
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchh-hhHHHHHHHHHHHHHHhhhHHHHHHHh--HHHHHHhcCCCCC
Q 036088 443 RRMPELFVVRFATVFAAAVITAGLYWQLDNSPRGTQG-RIGFFGFGITLIFFQCSREIPVFLQER--QIFIRETAYNAYR 519 (737)
Q Consensus 443 ~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~-r~g~lf~~~~~~~~~~~~~v~~~~~eR--~vf~RE~~~g~Y~ 519 (737)
+|||.....-+.+.+++-++++.+|-+. ......+. -.|.+ ++....+.....-.....|| ..+.|=+.... +
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~-~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGS-VTHNRGATFIPVLM--ALAAISTAFTGQAIAVARDRRYGALKRLGATPL-P 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCc-cCCcchhHhhHHHH--HHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCC-c
Confidence 6999999888888888877777776541 11111111 11111 11111112122222233443 35555555554 8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---chHHHHHHHHH
Q 036088 520 VSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSFIALISGLVS---HVMVGFIIVAC 596 (737)
Q Consensus 520 ~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p---~~~~a~~~~~~ 596 (737)
+..|+++|++..++..++..+++. +++++.|++.....+ .+++.+.+....+..++.+++++++ +.+.+..+...
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999988888777655554 556777887654333 3333334444555667777777764 44555777888
Q ss_pred HHHHHHHhcccccCCCCccchhhhhhccCcchHHHHHHHHh
Q 036088 597 LLGYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQSILQN 637 (737)
Q Consensus 597 ~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~n 637 (737)
+..+++++||++.|.+.+|.|++|+.+++|++|+.+++-..
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~ 196 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQA 196 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHH
Confidence 88899999999999999999999999999999999976543
No 430
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.29 E-value=6.3e-12 Score=134.97 Aligned_cols=170 Identities=24% Similarity=0.332 Sum_probs=118.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE-----------EECCEeCCc-------ccccceE--EEEecCCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV-----------TLNGEVLGS-------KLLKIIS--AYVMQDDL 185 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I-----------~~~G~~~~~-------~~~~~~~--~yV~Q~~~ 185 (737)
+||++.+++|.||-||||-|++++|.++|. -|.- .+-|-.+.. ..++..+ -||.|-+.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpn--lg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCC--CCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 589999999999999999999999998864 2211 001111000 0000000 11111111
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 036088 186 LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFL 265 (737)
Q Consensus 186 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illL 265 (737)
... .+|.++|. ....+...+++++.+.|.+..++-+. .|||||-||.+||.+-+.+.++.++
T Consensus 176 ~~k-~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMF 237 (592)
T KOG0063|consen 176 AVK-GTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMF 237 (592)
T ss_pred HHH-HHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEe
Confidence 111 13333332 22233467788888888887776665 5999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 266 DEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 266 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
|||.+-||...+..-...++.+....+=||++.||.+- +--+.|-+..|.
T Consensus 238 DEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLY 287 (592)
T KOG0063|consen 238 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLY 287 (592)
T ss_pred cCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEe
Confidence 99999999999999999999998878889999999863 344567777774
No 431
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.29 E-value=4.2e-13 Score=139.94 Aligned_cols=174 Identities=17% Similarity=0.229 Sum_probs=105.5
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEE--CCE-eCCccccc-ce--EEEEecCCCCCCCCCHHHHH
Q 036088 123 GVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTL--NGE-VLGSKLLK-II--SAYVMQDDLLYSMLTIEETL 196 (737)
Q Consensus 123 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~--~G~-~~~~~~~~-~~--~~yV~Q~~~l~~~lTV~e~l 196 (737)
+.+.+||.++|+||+|+|||||++.|++..........+.+ -|. ..+...+. .. +-.+.+-+. +..+.+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHHH
Confidence 35789999999999999999999999998753211123222 121 11111111 11 112222222 111111
Q ss_pred HHhhhhcCCCCCcHHHHHHHHHHHHHHcC------------CcccccccccCCCCCCCCHHH--------HHHHHHHHHH
Q 036088 197 MFSAEFRLPRSLSKEKKRKRVDALIDQLG------------LRSAAMTIIGDEQHRGVSGGE--------RRRVSIGVDI 256 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lg------------L~~~~~~~vg~~~~~~LSGGq--------rqRvsiA~aL 256 (737)
..... ..+.++...+ -| +....++.++ ..++.+|||+ +||+++||++
T Consensus 86 ~~~~~-----------~~~~a~~~~~-~G~~vll~iDei~r~a~a~~ev~~-~~G~~~sgG~~~~~~~~~~q~~~~Ar~~ 152 (249)
T cd01128 86 QVAEM-----------VLEKAKRLVE-HGKDVVILLDSITRLARAYNTVVP-PSGKILSGGVDANALHKPKRFFGAARNI 152 (249)
T ss_pred HHHHH-----------HHHHHHHHHH-CCCCEEEEEECHHHhhhhhhhccc-cCCCCCCCCcChhhhhhhHHHHHHhcCC
Confidence 11000 0001111110 01 1122233333 3455689999 9999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 257 IHDPILLFLDEPISGLDSTSAFN-VVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 257 ~~~p~illLDEPTsgLD~~~~~~-i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
..+++|.+| ||+.+|+.+... ++ +..+...+.|.|+.+|+... ...+|.|.+|+.|++
T Consensus 153 ~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr 211 (249)
T cd01128 153 EEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR 211 (249)
T ss_pred CCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence 999999999 999999765554 54 45554457899999999764 789999999999987
No 432
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.29 E-value=1.2e-09 Score=114.81 Aligned_cols=203 Identities=11% Similarity=0.061 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHHH--HHHH-hhhH-HHHHH-
Q 036088 431 MMILSKRLMINSRRM-PELFVVRFATVFAAAVITAGLYWQLDNSPRGTQGRIGFFGFGITLI--FFQC-SREI-PVFLQ- 504 (737)
Q Consensus 431 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~r~g~lf~~~~~~--~~~~-~~~v-~~~~~- 504 (737)
...+.+|+++..+|+ |......+++-++.-+++|..|-....+..+ .+...++.-.+..+ ++++ .... ..+.+
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~ 85 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSYAAFLAAGMVATSAMTASTFETIYATFARM 85 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345669999999999 9999999999998888888887532121112 22222221111111 1111 1111 12222
Q ss_pred -HhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036088 505 -ERQIFIRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSFIALISGL 583 (737)
Q Consensus 505 -eR~vf~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~ 583 (737)
|+..+.|-+..-. ++..++++|++.+.-..++..++...+.++ .|..+. ...+..+..+++..++..++|++++++
T Consensus 86 r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~ 162 (253)
T TIGR01291 86 RVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAAL 162 (253)
T ss_pred HHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444 788999999999877777777665555543 344333 234434444455666677899999999
Q ss_pred cCchHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCcchHHHHHHHHh
Q 036088 584 VSHVMVGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQSILQN 637 (737)
Q Consensus 584 ~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~n 637 (737)
.++.+.+..+...+..+++.+||.+.|.+.+|+|++++.+++|+.|+.|++=..
T Consensus 163 ~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~ 216 (253)
T TIGR01291 163 APSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPV 216 (253)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHH
Confidence 999998888889999999999999999999999999999999999999986544
No 433
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.28 E-value=4.7e-11 Score=133.74 Aligned_cols=172 Identities=24% Similarity=0.294 Sum_probs=114.0
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeC---Cc--------ccccceEEEEec
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVL---GS--------KLLKIISAYVMQ 182 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~---~~--------~~~~~~~~yV~Q 182 (737)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.- .. ..+++.+.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD--LNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC--eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 45689999 999999999999999999999999999998754 79999965433 21 124566788876
Q ss_pred CCCCCCCCCHHHHH--HHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc-CCCCCCCCHHHHHHHHHH-HHHhh
Q 036088 183 DDLLYSMLTIEETL--MFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG-DEQHRGVSGGERRRVSIG-VDIIH 258 (737)
Q Consensus 183 ~~~l~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~~~~~~LSGGqrqRvsiA-~aL~~ 258 (737)
.+. ++.+-+ .+.+ .. +.|....-|. |.++- + .++ |.+=| |++.
T Consensus 222 ~~~-----~~~~r~~~~~~a-------------~~-iAEyfr~~g~----~Vll~~D----slt-----r~A~A~rEis- 268 (438)
T PRK07721 222 SDQ-----PALMRIKGAYTA-------------TA-IAEYFRDQGL----NVMLMMD----SVT-----RVAMAQREIG- 268 (438)
T ss_pred CCC-----CHHHHHHHHHHH-------------HH-HHHHHHHCCC----cEEEEEe----ChH-----HHHHHHHHHH-
Confidence 543 111111 1111 01 1222222232 11110 1 011 11111 1111
Q ss_pred CCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHH--cCc-----EEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhh
Q 036088 259 DPILLFLDEP--ISGLDSTSAFNVVKVLKQIAK--SGS-----IVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSN 328 (737)
Q Consensus 259 ~p~illLDEP--TsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 328 (737)
+.+.|| |+|+|+.....+.++++++.+ +|. ||++.+|+.+. .+||++..+.+|+++.+++..+
T Consensus 269 ----l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 ----LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ----HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 123454 789999999999999999974 575 99999999873 7899999999999999988654
No 434
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.26 E-value=1e-11 Score=144.66 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 240 RGVSGGERRRVSIGVDIIHD----PILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~----p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
+.+||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++++ +++||++||+|. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 35899999999999999985 699999999999999999999999999975 899999999975 45799999999
Q ss_pred cCCE
Q 036088 316 SNGQ 319 (737)
Q Consensus 316 ~~G~ 319 (737)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 435
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.23 E-value=1.3e-09 Score=114.35 Aligned_cols=204 Identities=10% Similarity=0.021 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCC-CCCc----ccchhhhHHHHHHHHH----HHHHHhhh
Q 036088 428 WIEMMILSKRLMINSRRMPELFVVRFATVFAAAVITAGLYWQL-DNSP----RGTQGRIGFFGFGITL----IFFQCSRE 498 (737)
Q Consensus 428 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~-~~~~----~~~~~r~g~lf~~~~~----~~~~~~~~ 498 (737)
|++++.+++|.++...|||..+..-+++-+++-+++|.+|-.. +.+. .+..+.. .|..... .++.++..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~--~fl~pGi~~~~~~~~~~~~ 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYE--VYIVPGLCCMILLFNGMQS 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHH--HHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999988432 1110 0111121 1222111 11111111
Q ss_pred HHHHH--HHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 036088 499 IPVFL--QERQIFIRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSF 576 (737)
Q Consensus 499 v~~~~--~eR~vf~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~ 576 (737)
-.... +|+..+.+=+.... ++..+.++|++...-..++..+++.++.+. .|.......++.....+++..+...++
T Consensus 79 ~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 79 SLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred hhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 11222 23334444444444 788899999999988777776665555543 366554434443444445555667789
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHhcccccCCCCc---cchhhhhhccCcchHHHHHHH
Q 036088 577 IALISGLVSHVMVGFIIVACLLGYFLVFSGAYIPRDQM---RSFWVLLHYTSLVKYPFQSIL 635 (737)
Q Consensus 577 g~~i~a~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~i---p~~~~Wl~yiSp~~y~~~~l~ 635 (737)
|.++++++++.+.+..+.+.++.+++.+||.+.|.+.+ |+|++|+.+++|+.|..|++=
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R 218 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVR 218 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHH
Confidence 99999999998888888888888999999999998766 889999999999999998764
No 436
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.22 E-value=1.3e-10 Score=133.68 Aligned_cols=138 Identities=25% Similarity=0.419 Sum_probs=104.0
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHH------HHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC-
Q 036088 187 YSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDA------LIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHD- 259 (737)
Q Consensus 187 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~- 259 (737)
+..|++.|.+.|...+.+... .....+..+.+ .|-.+||.-. ++ ++...+|||||.||+-+|..+-++
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YL--tL--~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYL--TL--SRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcc--cc--cccCCCcChhHHHHHHHHHHhcccc
Confidence 445788888888766643211 11111222222 2334566532 11 344568999999999999999875
Q ss_pred -CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec------CCEEEeeCChhhHHH
Q 036088 260 -PILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS------NGQAVCSEAPSNLSQ 331 (737)
Q Consensus 260 -p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~~ 331 (737)
-=+++||||+.||.+....++++.|++|.+.|-|+|++.||+ ++.+.||+|+=|- .|+|++.|+++++.+
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 346799999999999999999999999999999999999995 4789999999984 589999999999864
No 437
>PRK10869 recombination and repair protein; Provisional
Probab=99.22 E-value=2.5e-11 Score=140.51 Aligned_cols=76 Identities=26% Similarity=0.426 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 241 GVSGGERRRVSIGVDIIH----DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|. +..++|+.+++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 479999999999999997 5899999999999999999999999999975 689999999985 568999999998
Q ss_pred CCE
Q 036088 317 NGQ 319 (737)
Q Consensus 317 ~G~ 319 (737)
++.
T Consensus 507 k~~ 509 (553)
T PRK10869 507 KET 509 (553)
T ss_pred ccc
Confidence 753
No 438
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.22 E-value=1.3e-11 Score=147.80 Aligned_cols=81 Identities=20% Similarity=0.186 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVK-VLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
+.+|+|++|++.|++++ ++|+++|||||++|+|+.....+.. ++..+.+.|.++|++||++.. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 46999999999999998 8999999999999999999988854 677777778999999999642 33334444433 45
Q ss_pred EEEee
Q 036088 319 QAVCS 323 (737)
Q Consensus 319 ~iv~~ 323 (737)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 439
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.22 E-value=1.9e-11 Score=142.69 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHHHHHh----------hCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHh
Q 036088 239 HRGVSGGERRRVSIGVDII----------HDPILLFLDEPI-SGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILS 307 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~----------~~p~illLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 307 (737)
...||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ .|.|||++||++. ...
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chh
Confidence 4679999999999999887 599999999998 789999999999999998 5889999999964 467
Q ss_pred hcceEEEecC-CEE
Q 036088 308 LLDRLIFLSN-GQA 320 (737)
Q Consensus 308 ~~D~v~lL~~-G~i 320 (737)
.+|++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 8999999986 543
No 440
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=5.3e-11 Score=148.12 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=73.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHH
Q 036088 237 EQHRGVSGGERRRVSIGVDIIH----------DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRIL 306 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~----------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 306 (737)
..++.|||||++||+||++|+. +|++|||||||+|||+.+...+++.|+++...|++|++|||++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 3467899999999999999986 79999999999999999999999999999888999999999986 478
Q ss_pred hhcceEEEecCC
Q 036088 307 SLLDRLIFLSNG 318 (737)
Q Consensus 307 ~~~D~v~lL~~G 318 (737)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 899999999753
No 441
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.17 E-value=1.7e-10 Score=119.52 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=91.7
Q ss_pred EEecCcEEEEEcCCCCcHHHH-HHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhh
Q 036088 124 VASEGEITAILGASGSSKTTL-MDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEF 202 (737)
Q Consensus 124 ~i~~Ge~~aI~GpsGaGKSTL-L~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~ 202 (737)
-+++|+++.|.|+|||||||| ++++.+..+++ . .+.|+..+ .|..+.+.....+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~-----------------~~~yi~~e------~~~~~~~~~~~~~ 74 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG--Y-----------------SVSYVSTQ------LTTTEFIKQMMSL 74 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC--C-----------------cEEEEeCC------CCHHHHHHHHHHh
Confidence 378999999999999999999 79999875422 1 12344422 3555555544322
Q ss_pred cCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCC----CH
Q 036088 203 RLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDII----HDPILLFLDEPISGL----DS 274 (737)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~----~~p~illLDEPTsgL----D~ 274 (737)
.. . +++.... +.-...+ .. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+
T Consensus 75 g~--~---------~~~~~~~-~~l~~~~-----~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~ 136 (230)
T PRK08533 75 GY--D---------INKKLIS-GKLLYIP-----VY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASE 136 (230)
T ss_pred CC--c---------hHHHhhc-CcEEEEE-----ec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcch
Confidence 11 0 1111111 1000010 01 136777665555544333 369999999999999 88
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEecCCcH------HHHhhcceEEEec
Q 036088 275 TSAFNVVKVLKQIAKSGSIVIMSIHQPSH------RILSLLDRLIFLS 316 (737)
Q Consensus 275 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~------~i~~~~D~v~lL~ 316 (737)
.....+.+.++++++.|.|+++++|+... .+..++|-|+.|+
T Consensus 137 ~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 137 VAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 88889999999998888877776654321 0123457777775
No 442
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.16 E-value=8.7e-11 Score=120.33 Aligned_cols=134 Identities=18% Similarity=0.230 Sum_probs=88.5
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
+.+-+|+++..++|++++|.||||+|||||++.+++..-- .++ |-.+.... +-++--+.++..+...|
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l----a~~---G~~vpa~~-----~~i~~~~~i~~~~~~~d 84 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM----AQM---GMDVPAKS-----MRLSLVDRIFTRIGARD 84 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH----HHc---CCccCccc-----cEeccccEEEEecCccc
Confidence 5689999999999999999999999999999999986321 000 11111110 01111122222222223
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH--HHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSG--GERRRVSIGVDIIHDPILLFLDEPISGL 272 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG--GqrqRvsiA~aL~~~p~illLDEPTsgL 272 (737)
++.. ++|. .|-+|++-....+.+|+++|||||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2211 1111 2344444444445689999999999999
Q ss_pred CHHHHHHHHHH-HHHHHHc-CcEEEEEecCCc
Q 036088 273 DSTSAFNVVKV-LKQIAKS-GSIVIMSIHQPS 302 (737)
Q Consensus 273 D~~~~~~i~~~-L~~l~~~-g~tvi~~~H~~~ 302 (737)
|+.....+... ++.+.+. +.++|++||++.
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 99999998888 7788775 889999999965
No 443
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.15 E-value=9.6e-11 Score=119.82 Aligned_cols=63 Identities=27% Similarity=0.463 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCc
Q 036088 240 RGVSGGERRRVSIGVDIIHDP---ILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPS 302 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 302 (737)
..+|.|+||.+.|+..|...+ .++++|||-++|+|.....+++.|+++++.+.-+|+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 347999999999999888776 999999999999999999999999888765778999999975
No 444
>PRK15066 inner membrane transport permease; Provisional
Probab=99.12 E-value=3.4e-08 Score=103.92 Aligned_cols=205 Identities=11% Similarity=0.076 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHHH-H-HHHhh-hHHHH
Q 036088 427 FWIEMMILSKRLMINSRRMPEL-FVVRFATVFAAAVITAGLYWQLDNSPRGTQGRIGFFGFGITLI-F-FQCSR-EIPVF 502 (737)
Q Consensus 427 ~~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~r~g~lf~~~~~~-~-~~~~~-~v~~~ 502 (737)
.|+-++.+.+|..+...||+.. +..-+++.++..+++|.++-....+..+. +..-+++-.+... . ..+.. ....+
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~-~y~~fl~pGll~~~~~~~~~~~~~~~i 84 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGF-SYMQFIVPGLIMMSVITNSYSNVASSF 84 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677889999999999999854 34444555566777776653110111111 2221121121111 1 11111 12223
Q ss_pred HHHhH--HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036088 503 LQERQ--IFIRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSFIALI 580 (737)
Q Consensus 503 ~~eR~--vf~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i 580 (737)
..+|. .+.|=.... -++..+.+++++...-..++..++..++.+...|.... ....++..+++...+....|+++
T Consensus 85 ~~~~~~~~~~~l~vtp-~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~ 161 (257)
T PRK15066 85 FSAKFQRNIEELLVSP-VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLIN 161 (257)
T ss_pred HHHHHhhhHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33331 111112222 47888999999987766666665555555544466533 22233333333333334458888
Q ss_pred HHhcCchHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCcchHHHHHHH
Q 036088 581 SGLVSHVMVGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQSIL 635 (737)
Q Consensus 581 ~a~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~ 635 (737)
+.+.++.+....+.+.++.+++..||.+.|.+++|+|++|+.+++|+.|..|++=
T Consensus 162 a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R 216 (257)
T PRK15066 162 AVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFR 216 (257)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHH
Confidence 8888888888888888899999999999999999999999999999999998764
No 445
>PRK13695 putative NTPase; Provisional
Probab=99.09 E-value=9.2e-11 Score=116.01 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEP--ISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEP--TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
.+||+++-+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|++..+.+|
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGG 151 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCc
Confidence 4999999999999999999999999995 33444 445677777766799999999984 356789999999999
Q ss_pred EEEee
Q 036088 319 QAVCS 323 (737)
Q Consensus 319 ~iv~~ 323 (737)
++...
T Consensus 152 ~i~~~ 156 (174)
T PRK13695 152 RVYEL 156 (174)
T ss_pred EEEEE
Confidence 98765
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.09 E-value=4e-10 Score=121.72 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=95.1
Q ss_pred eeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccc--cceEEEEecCCC-CCCCCCHHHHHH
Q 036088 121 ISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLL--KIISAYVMQDDL-LYSMLTIEETLM 197 (737)
Q Consensus 121 vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~--~~~~~yV~Q~~~-l~~~lTV~e~l~ 197 (737)
+++.+++|+.++|.||+|||||||+++|++.+++. .|.+.+... .+... +..+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~--~~iv~ied~--~El~~~~~~~~~l~~~~~~~~~~--------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD--ERIITIEDT--REIFLPHPNYVHLFYSKGGQGLA--------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc--ccEEEEcCc--cccCCCCCCEEEEEecCCCCCcC---------
Confidence 66788999999999999999999999999998644 577776431 11111 112222211100 000
Q ss_pred HhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 036088 198 FSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSA 277 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~ 277 (737)
.++- .-.++.+|-.+|+++++|||.+
T Consensus 204 -------------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~------- 229 (308)
T TIGR02788 204 -------------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG------- 229 (308)
T ss_pred -------------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------
Confidence 0111 1134456677999999999996
Q ss_pred HHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 278 FNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 278 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
.++++.++.+...+.+++.|+|..+ ..+..||+..|..|++...|.+.+..
T Consensus 230 ~e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 230 DEAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 3456677777642345799999987 46779999999999988888777654
No 447
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.05 E-value=1.4e-09 Score=108.11 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=64.5
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCcEEEEEecCCcH-----
Q 036088 238 QHRGVSGGERR------RVSIGVDIIHDPILLFLDEPISGLD---STSAFNVVKVLKQIAKSGSIVIMSIHQPSH----- 303 (737)
Q Consensus 238 ~~~~LSGGqrq------RvsiA~aL~~~p~illLDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~----- 303 (737)
.+..+|+||+| +.........+|+++++||||+.+| ......+.+.++.+++.|.|+|+++|....
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 34468999998 4444455667999999999999999 888888889999998889999999998653
Q ss_pred ---HHHhhcceEEEec
Q 036088 304 ---RILSLLDRLIFLS 316 (737)
Q Consensus 304 ---~i~~~~D~v~lL~ 316 (737)
.+..++|.++.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 1567899999886
No 448
>PRK03918 chromosome segregation protein; Provisional
Probab=99.02 E-value=5.9e-10 Score=136.94 Aligned_cols=78 Identities=27% Similarity=0.345 Sum_probs=68.6
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 238 QHRGVSGGERR------RVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 238 ~~~~LSGGqrq------RvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
.+..||||||+ |++||++++.+|++++|||||+|||+.....+.+.|..+++.+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 34679999999 455566788999999999999999999999999999998777889999999964 6789999
Q ss_pred EEEecC
Q 036088 312 LIFLSN 317 (737)
Q Consensus 312 v~lL~~ 317 (737)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999974
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.00 E-value=9.4e-10 Score=105.81 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcH
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPIS----------GLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSH 303 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTs----------gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 303 (737)
.+.++.++...+++...+|+++++||+++ +.|......+.+++....+.+.|+|+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45566677888899999999999999994 455555566666655555568999999998764
No 450
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.00 E-value=5.4e-09 Score=126.64 Aligned_cols=70 Identities=23% Similarity=0.217 Sum_probs=60.9
Q ss_pred hhCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCcEEEEEecCCcHH--------HHhhcceEEEecCCEEEeeCCh
Q 036088 257 IHDPILLFLDEPISGL-DSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHR--------ILSLLDRLIFLSNGQAVCSEAP 326 (737)
Q Consensus 257 ~~~p~illLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~--------i~~~~D~v~lL~~G~iv~~G~~ 326 (737)
..+|+++++|||+.+| |+..+..+.+.++++.+.|.++|++||++... +.+.||++++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 79999999999999988899999999998642 1368999999999998766643
No 451
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.98 E-value=1.3e-09 Score=135.41 Aligned_cols=80 Identities=24% Similarity=0.243 Sum_probs=68.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhh
Q 036088 237 EQHRGVSGGERRRVSIGVDIIH--------DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSL 308 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~--------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 308 (737)
..+++|||||++|++||++|+. +|++||+||||+|||+.+...+++.|..+.+.|+||++|||... ..-++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 4467899999999999999995 89999999999999999999999999999888999999999753 24445
Q ss_pred cceEEEecC
Q 036088 309 LDRLIFLSN 317 (737)
Q Consensus 309 ~D~v~lL~~ 317 (737)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 556666654
No 452
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=9.7e-10 Score=139.67 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=78.5
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH------HHHHHHHHhhCC
Q 036088 187 YSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERR------RVSIGVDIIHDP 260 (737)
Q Consensus 187 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrq------RvsiA~aL~~~p 260 (737)
|.+ |+.|||.+ ..-. ... .......+...++..+ ... |+.++. .+.||||||| |++||++++.+|
T Consensus 1154 ~~~-~~~~~i~~-~~~~-~~~-~~~~~~~~~~~~~~~~--~~~-~~~~~~--~~~lS~Gq~~~~~~~~rlala~~~~~~~ 1224 (1311)
T TIGR00606 1154 YRG-QDIEYIEI-RSDA-DEN-VSASDKRRNYNYRVVM--LKG-DTALDM--RGRCSAGQKVLASLIIRLALAETFCLNC 1224 (1311)
T ss_pred cCc-cHHHHhhc-CCCC-ChH-HHHHHHcCchHHHhcc--CCC-CeecCC--CCCCchhhhhHhhHhHHHHHHHHHhcCC
Confidence 343 99999988 2110 000 0111222333343332 111 454432 3469999999 999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCcEEEEEecCCcHHHHhhc
Q 036088 261 ILLFLDEPISGLDSTSAFNVVKVLKQIAK-----SGSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 261 ~illLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~~~~i~~~~ 309 (737)
++|+|||||+|||+.+...+.+.|.++.. .|.+||++||++. .+..+|
T Consensus 1225 ~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~~ 1277 (1311)
T TIGR00606 1225 GIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELLG 1277 (1311)
T ss_pred CEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHHh
Confidence 99999999999999999999999988742 3789999999976 365554
No 453
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.96 E-value=3.2e-09 Score=118.29 Aligned_cols=155 Identities=18% Similarity=0.206 Sum_probs=109.0
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. .+|+|
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~--~gvI~~iGerg---------------------~ev~e 199 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD--INVISLVGERG---------------------REVKD 199 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC--eEEEEeCCCCc---------------------ccHHH
Confidence 4578885 999999999999999999999999999997643 67666655431 36666
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCcEEEEeC
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDII-------HDPILLFLDE 267 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~-------~~p~illLDE 267 (737)
.+.... ..-|+... ..+ .....-|.|+|+|++.+.+.+ .++-++++|+
T Consensus 200 ~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 200 FIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred HHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 554211 11122110 111 123458999999999999888 7899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCC
Q 036088 268 PISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEA 325 (737)
Q Consensus 268 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 325 (737)
||...|+. ++|-..+.+....|.+..+.+|.+ .+++.+-+ ..+|.+...+.
T Consensus 255 lTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 255 VTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred hHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hHHHHhcc---CCCcceEEEEE
Confidence 99999996 555556666654588888888852 35555544 46787765544
No 454
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.92 E-value=1.4e-08 Score=99.02 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhc-ceEEEecCC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLL-DRLIFLSNG 318 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~-D~v~lL~~G 318 (737)
..-|-||-=---+.+.+ .+.-|.+||||-++|.+.-+.+++..|+++++.|.-+|+.||.|- +..+- -+|+-++.+
T Consensus 128 h~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi--LlAiP~A~I~~~~~~ 204 (233)
T COG3910 128 HHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI--LLAIPGAEIYEISES 204 (233)
T ss_pred hhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh--heeCCCcEEEEEecC
Confidence 34688886544444443 467899999999999999999999999999999988999999984 23221 344445443
No 455
>PRK01156 chromosome segregation protein; Provisional
Probab=98.89 E-value=4.2e-09 Score=129.68 Aligned_cols=77 Identities=29% Similarity=0.361 Sum_probs=66.8
Q ss_pred CCCCCCHHHHHHHHH------HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-Hc-C-cEEEEEecCCcHHHHhh
Q 036088 238 QHRGVSGGERRRVSI------GVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIA-KS-G-SIVIMSIHQPSHRILSL 308 (737)
Q Consensus 238 ~~~~LSGGqrqRvsi------A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~~~H~~~~~i~~~ 308 (737)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+... .. | .++|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 466799999999975 589999999999999999999999999999998654 33 3 48999999975 4689
Q ss_pred cceEEEec
Q 036088 309 LDRLIFLS 316 (737)
Q Consensus 309 ~D~v~lL~ 316 (737)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.88 E-value=1.1e-08 Score=103.66 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=43.4
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 251 SIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 251 siA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
+|+++|..+|+++++|||. |.++...+ .+.+..|..++.|+|.++. .+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4778888999999999996 55543333 3345679999999999863 57789987774
No 457
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.81 E-value=3.6e-08 Score=102.26 Aligned_cols=161 Identities=15% Similarity=0.187 Sum_probs=95.6
Q ss_pred ceeee-eEEEecCcEEEEEcCCCCcHHHHHHHHH-cCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHH
Q 036088 117 LLDDI-SGVASEGEITAILGASGSSKTTLMDAIA-GRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 117 iL~~v-s~~i~~Ge~~aI~GpsGaGKSTLL~~L~-G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
-|+.+ .+=+++|+++.|.|++|+|||||...++ +.... .+. +.|+..+. +.++
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~----------------~~y~~~e~------~~~~ 67 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ---GKK----------------VYVITTEN------TSKS 67 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC---CCE----------------EEEEEcCC------CHHH
Confidence 34443 4568999999999999999999998875 22111 122 23444321 3333
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh--CCcEEEEeCCCCC-
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIH--DPILLFLDEPISG- 271 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~--~p~illLDEPTsg- 271 (737)
.+.-...+. +. +++.+. -|.-...+..+. .....|.++++.+.....++. +|+++++||||+.
T Consensus 68 ~~~~~~~~g----~~-------~~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 68 YLKQMESVK----ID-------ISDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHCC----CC-------hhHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 222211111 10 001100 011111111111 112356788999999999997 9999999999964
Q ss_pred --CCHHHHHHHHHHHHHHHHcCcEEEEEecCCcH------HHHhhcceEEEec
Q 036088 272 --LDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSH------RILSLLDRLIFLS 316 (737)
Q Consensus 272 --LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~------~i~~~~D~v~lL~ 316 (737)
+|......+++.++.+++.|.|+++++|+... .+..++|-++.|+
T Consensus 134 ~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 134 TYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 45555556666677777779999999998642 1345677777775
No 458
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.80 E-value=6.1e-09 Score=131.43 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=67.0
Q ss_pred CCCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 238 QHRGVSGGERRRVSIGVDII----HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
.+..||||||+|++||++++ .+|+++||||||+|||+.+...+.+.|+.+++ +.++|++||++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 45679999999999999984 67799999999999999999999999999875 578999999976 467899997
Q ss_pred Eec
Q 036088 314 FLS 316 (737)
Q Consensus 314 lL~ 316 (737)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
No 459
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.77 E-value=5.6e-09 Score=116.16 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=45.8
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce-EEEECCEeCCc
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG-TVTLNGEVLGS 170 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G-~I~~~G~~~~~ 170 (737)
+.+|++||+++++||+++|+|||||||||||+ +|+..+. +| +|.++|+++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~--sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS--EGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC--CCCEEEECCEECCC
Confidence 56899999999999999999999999999999 6776543 56 89999998854
No 460
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.74 E-value=1.3e-06 Score=91.62 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=96.6
Q ss_pred HhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 036088 505 ERQIFIRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSFIALIS-GL 583 (737)
Q Consensus 505 eR~vf~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~-a~ 583 (737)
++..+.|=..+...+ ..+++++.+...-...+...+...++.+..|.. ....+..+...+.+......++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433 556777777776666666666666666677732 233455555555666666777888555 36
Q ss_pred cCchHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCcchHHHHHHHHhHhc
Q 036088 584 VSHVMVGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQSILQNEYG 640 (737)
Q Consensus 584 ~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~ 640 (737)
..+.+.+..+..++..++..++|.+.|.+.+|.|++|+.++.|.+|+.+++-....+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~ 250 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLG 250 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhC
Confidence 677788888888899999999999999999999999999999999999988765554
No 461
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.73 E-value=3e-08 Score=112.06 Aligned_cols=151 Identities=20% Similarity=0.261 Sum_probs=94.4
Q ss_pred cceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHH
Q 036088 116 LLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEET 195 (737)
Q Consensus 116 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~ 195 (737)
.++++.+..+.+|++++++||||+||||++..|++.+... .|. +.+++|.+|. ...++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~--~G~--------------~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR--HGA--------------SKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh--cCC--------------CeEEEEeCCc---cchhHHHH
Confidence 3566777778899999999999999999999999986422 232 1357888875 23689999
Q ss_pred HHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH-HHHHHHHHhhCC-----cEEEEeCCC
Q 036088 196 LMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERR-RVSIGVDIIHDP-----ILLFLDEPI 269 (737)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrq-RvsiA~aL~~~p-----~illLDEPT 269 (737)
|.+.++... ++........+..++..++.+....+|.. ...+++. .+.-..+++.++ .+|+||.++
T Consensus 305 Lr~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDT-----aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~ 376 (484)
T PRK06995 305 LRIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLIDT-----IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS 376 (484)
T ss_pred HHHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeCC-----CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCC
Confidence 998766532 12111222334445556777665555532 2222322 234444555554 689999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCcEEEEEec
Q 036088 270 SGLDSTSAFNVVKVLKQIAKSGSIVIMSIH 299 (737)
Q Consensus 270 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 299 (737)
.+ ..+.+.++.....+.+-++.|+
T Consensus 377 ~~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 377 HG------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred cH------HHHHHHHHHhccCCCCEEEEeC
Confidence 87 3344555555555555444444
No 462
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.72 E-value=4.6e-07 Score=83.72 Aligned_cols=118 Identities=26% Similarity=0.336 Sum_probs=77.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPR 206 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~ 206 (737)
++..+.|.||+|+||||+++.|+....... .+-+.++......... ....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~------------------~~~~----------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVL------------------DQLL----------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccCH------------------HHHH-----------
Confidence 467899999999999999999999975321 1344444433211000 0000
Q ss_pred CCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH----
Q 036088 207 SLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVK---- 282 (737)
Q Consensus 207 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~---- 282 (737)
.... ........+++..+..++++--.+|.++++||+..-.+.........
T Consensus 51 --------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~ 105 (148)
T smart00382 51 --------------LIIV-----------GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEEL 105 (148)
T ss_pred --------------hhhh-----------hccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhh
Confidence 0000 11122467788888888888887899999999999999988877664
Q ss_pred --HHHHHHHcCcEEEEEec
Q 036088 283 --VLKQIAKSGSIVIMSIH 299 (737)
Q Consensus 283 --~L~~l~~~g~tvi~~~H 299 (737)
........+..+|+++|
T Consensus 106 ~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 106 RLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHHhcCCCEEEEEeC
Confidence 22223334678888888
No 463
>PRK02224 chromosome segregation protein; Provisional
Probab=98.71 E-value=2.6e-08 Score=122.58 Aligned_cols=78 Identities=27% Similarity=0.411 Sum_probs=67.3
Q ss_pred CCCCCHHHHH------HHHHHHHHhhC-----C-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCc-EEEEEecCCcHHH
Q 036088 239 HRGVSGGERR------RVSIGVDIIHD-----P-ILLFLDEPISGLDSTSAFNVVKVLKQIAKSGS-IVIMSIHQPSHRI 305 (737)
Q Consensus 239 ~~~LSGGqrq------RvsiA~aL~~~-----p-~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H~~~~~i 305 (737)
+..||||||+ |++++++++.+ | +++||||||++||+.....+.+.|+.+.+.|. +||++||++. +
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4579999999 89999998864 3 67999999999999999999999999986664 7999999975 4
Q ss_pred HhhcceEEEecCC
Q 036088 306 LSLLDRLIFLSNG 318 (737)
Q Consensus 306 ~~~~D~v~lL~~G 318 (737)
...||+++.|.+.
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 5789999999643
No 464
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.70 E-value=9.9e-08 Score=99.34 Aligned_cols=136 Identities=21% Similarity=0.359 Sum_probs=83.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECC-EeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG-EVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPR 206 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G-~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~ 206 (737)
|.+..|+||+|+|||||+-.++--.. +|.=.+.+ ... .....+-|+.=+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va----~G~~~~g~~~~~---~~~~~Vlyi~~E----------------------- 50 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA----LGKNLFGGGLKV---TEPGRVVYLSAE----------------------- 50 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh----cCccccCCcccc---CCCceEEEEECC-----------------------
Confidence 67899999999999999888864322 22211111 110 001123333311
Q ss_pred CCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHH----------------HHhhCCcEEEEeCCCC
Q 036088 207 SLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGV----------------DIIHDPILLFLDEPIS 270 (737)
Q Consensus 207 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~----------------aL~~~p~illLDEPTs 270 (737)
.+..+..+|+..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 51 -d~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~ 121 (239)
T cd01125 51 -DPREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLV 121 (239)
T ss_pred -CCHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChH
Confidence 122334556666666666544332221 1244555554443 335799999999 765
Q ss_pred ------CCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCc
Q 036088 271 ------GLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPS 302 (737)
Q Consensus 271 ------gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~ 302 (737)
.+|+.....+++.|++++++ |.+||+++|...
T Consensus 122 ~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 122 SFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999865 889999999864
No 465
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.69 E-value=2.4e-08 Score=126.09 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 239 HRGVSGGERRRVSIGVDIIH----DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+..||||||++++||++|+. +|++++||||++|||+.....+.+.|+++++ +..+|++||++. +...||+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence 45799999999999999985 7899999999999999999999999999865 467999999974 6799999987
Q ss_pred ecC
Q 036088 315 LSN 317 (737)
Q Consensus 315 L~~ 317 (737)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 753
No 466
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.61 E-value=6.8e-07 Score=86.66 Aligned_cols=131 Identities=11% Similarity=0.027 Sum_probs=95.4
Q ss_pred HHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHH--HHHHHHHHHHHHHHHHHHHHHH
Q 036088 502 FLQERQIFIRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFS--GFLFFFIIICISFWVGSSFIAL 579 (737)
Q Consensus 502 ~~~eR~vf~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~--~f~~f~~~~~l~~~~~~~~g~~ 579 (737)
.-+|+.++.|-+..-. +++.|+++|++...-..+++.++..++.+. .|.+.... ..+.+++...+.......++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888887777 799999999999999999988887777754 48876531 2222332333333444455566
Q ss_pred HHHhcCchHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCcchHHHHHHH
Q 036088 580 ISGLVSHVMVGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQSIL 635 (737)
Q Consensus 580 i~a~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~ 635 (737)
++...++.+. ......+..++.+.||.+.|.+++|+|++|+.+++|++|+.+++=
T Consensus 92 ~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 6555555543 334566677888889999999999999999999999999999874
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.58 E-value=1.3e-07 Score=94.72 Aligned_cols=85 Identities=18% Similarity=0.098 Sum_probs=62.6
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCC--CCCCCCCHHH
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDD--LLYSMLTIEE 194 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~--~l~~~lTV~e 194 (737)
..+=+.+.+++|+.++|+||||||||||+++|+|++++. .|.|.+.+..-.....+..++++.|.+ ...+..|+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~--~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD--ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 444455668899999999999999999999999998744 799999775422222344556666543 4566789999
Q ss_pred HHHHhhhhc
Q 036088 195 TLMFSAEFR 203 (737)
Q Consensus 195 ~l~~~~~~~ 203 (737)
.+..+.+..
T Consensus 92 ~l~~~lR~~ 100 (186)
T cd01130 92 LLRSALRMR 100 (186)
T ss_pred HHHHHhccC
Confidence 988776543
No 468
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.57 E-value=6.1e-07 Score=109.44 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=55.3
Q ss_pred HHHHHhhCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHh--hcceEEEecCCEEE
Q 036088 252 IGVDIIHDPILLFLDEPISGL-DSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILS--LLDRLIFLSNGQAV 321 (737)
Q Consensus 252 iA~aL~~~p~illLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~--~~D~v~lL~~G~iv 321 (737)
|++++..+|+++++|||+.+| |+..+..+.+.++.+.+.|.+++++||++.. +.+ .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 677888999999999999999 7999999999999998889999999999864 443 34444444444444
No 469
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.55 E-value=6.1e-08 Score=87.53 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=52.1
Q ss_pred HHHHHhhccccccccccCCccccChHHHHh-hcCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036088 667 KIKLLKSMGHVLGKNITGSSCLATGGKILE-HSGATDISKWNCFGLPLGLGSSLGFCFTSFCCLAA 731 (737)
Q Consensus 667 ~~~~~~~~~~~~g~~~~~~~C~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~ 731 (737)
.++.|+..|+.+|... ++|++||+ .|+++.+++|||+||+++|+++|.++.++++.+..
T Consensus 15 ~~q~C~~~Ga~~G~~~------V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~ 74 (103)
T PF06422_consen 15 ANQVCAVVGAQPGSTY------VSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIK 74 (103)
T ss_pred CcCccCCCCCCCCccE------EeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4688999999988764 89999997 79999999999999999999999999988876543
No 470
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.48 E-value=5.8e-08 Score=111.35 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=98.4
Q ss_pred ceeee-eEEEecCcEEEEEcCCCCcHHHHHHHH--HcCCCCCCcceEEEECCEeCCccccc---ceEEEEecCCCCCCCC
Q 036088 117 LLDDI-SGVASEGEITAILGASGSSKTTLMDAI--AGRISKQRLKGTVTLNGEVLGSKLLK---IISAYVMQDDLLYSML 190 (737)
Q Consensus 117 iL~~v-s~~i~~Ge~~aI~GpsGaGKSTLL~~L--~G~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yV~Q~~~l~~~l 190 (737)
-|+.+ .+=+.+|..+.|.||+|||||||..-+ .|....+ +.-+++....-.. .+. +..|+-.++..--
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g--e~~lyvs~eE~~~-~l~~~~~~~G~~~~~~~~~--- 82 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD--EPGVFVTFEESPQ-DIIKNARSFGWDLQKLVDE--- 82 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEecCHH-HHHHHHHHcCCCHHHHhhc---
Confidence 35554 557899999999999999999998866 4543322 3445555432211 111 1123322211000
Q ss_pred CHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH--HHHhhCCcEEEEeCC
Q 036088 191 TIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIG--VDIIHDPILLFLDEP 268 (737)
Q Consensus 191 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA--~aL~~~p~illLDEP 268 (737)
+++.+ .. ..+. .....+++.+++.+..+.... .+|+|++|||.|+ .+|...|+..
T Consensus 83 ---g~l~~---~~---~~~~----~~~~~~~~~~~l~~~l~~i~~-----~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 83 ---GKLFI---LD---ASPD----PEGQDVVGGFDLSALIERINY-----AIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ---CceEE---Ee---cCch----hccccccccCCHHHHHHHHHH-----HHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 00000 00 0000 011123344455544444433 5999999999999 6666665443
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHH-------H-HhhcceEEEec
Q 036088 269 ISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHR-------I-LSLLDRLIFLS 316 (737)
Q Consensus 269 TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~-------i-~~~~D~v~lL~ 316 (737)
...+..+.++++.+++.|.|+|+++|++... + ..++|.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999988899999999986420 1 44789999986
No 471
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=2e-07 Score=102.98 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHHhh---------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCc
Q 036088 241 GVSGGERRRVSIGVDIIH---------DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPS 302 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~---------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 302 (737)
.+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|.+. |..|++|+|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 489999999999999999 99999999999999999999999999764 678999999864
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.47 E-value=7e-07 Score=98.04 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=78.3
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcC
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRL 204 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~ 204 (737)
.+++.++.|.||+||||||+|+.|.+.+.. ...|.|..-+.++... .......+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~-~~~~~i~tiEdp~E~~-~~~~~~~i~q~e-------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINK-NAAGHIITIEDPIEYV-HRNKRSLINQRE-------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCc-CCCCEEEEEcCChhhh-ccCccceEEccc--------------------
Confidence 457889999999999999999999987642 2246665544332110 000000111100
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 036088 205 PRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVL 284 (737)
Q Consensus 205 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L 284 (737)
.|.. ..+ -.-+++++|-.+|+++++||+. |+.++...++
T Consensus 177 -------------------vg~~-------------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~-- 215 (343)
T TIGR01420 177 -------------------VGLD-------------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT-- 215 (343)
T ss_pred -------------------cCCC-------------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH--
Confidence 0100 001 1123566788899999999997 8887765444
Q ss_pred HHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 285 KQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 285 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.+..|.+|+.|+|-.+ .....+|++-|-
T Consensus 216 --aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~~ 243 (343)
T TIGR01420 216 --AAETGHLVFGTLHTNS--AAQTIERIIDVF 243 (343)
T ss_pred --HHHcCCcEEEEEcCCC--HHHHHHHHHHhc
Confidence 3567999999999976 356778886653
No 473
>PRK14079 recF recombination protein F; Provisional
Probab=98.45 E-value=3.5e-07 Score=100.58 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 241 GVSGGERRRVSIGVDII---------HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
-+|+||+|++.+|..|+ .+|++++||||+++||......+.+.|.... .++|.+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCce
Confidence 38999999999999999 8999999999999999999999998886532 3555555543 46999
Q ss_pred EEEecCCEEEee
Q 036088 312 LIFLSNGQAVCS 323 (737)
Q Consensus 312 v~lL~~G~iv~~ 323 (737)
++.+.+|++.-.
T Consensus 335 ~~~~~~~~~~~~ 346 (349)
T PRK14079 335 TLRIEAGVFTPE 346 (349)
T ss_pred EEEEeccEecCC
Confidence 999999887543
No 474
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.45 E-value=5.4e-07 Score=111.05 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=69.7
Q ss_pred CCCCCCHHHHHHHHHHHHHh------hC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhc
Q 036088 238 QHRGVSGGERRRVSIGVDII------HD--PILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~------~~--p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 309 (737)
.+..|||||+=.++||.+|+ .+ -++|||||||..||+.+...+++.|..+...+++|++|||++ ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999888887665 45 699999999999999999999999999998899999999995 478899
Q ss_pred ceEEEecC
Q 036088 310 DRLIFLSN 317 (737)
Q Consensus 310 D~v~lL~~ 317 (737)
|.++.+..
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99999875
No 475
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.44 E-value=4.8e-07 Score=110.06 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=87.1
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
..|-+|+++. ..+.++.|.|||++||||+||.++-..- +.+.-.|||-+..- +++.+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-------------------lAq~G~~VPa~~a~---i~~~d 651 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-------------------LAQIGSFVPAESAR---IGIVD 651 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-------------------HHhcCCceeccceE---ecccC
Confidence 3467788887 6778999999999999999999875411 01111244432211 11111
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh--CCcEEEEeCC---C
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIH--DPILLFLDEP---I 269 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~--~p~illLDEP---T 269 (737)
. +.-++|-. +....|+|.=+.....++..|-. +++++|+||| |
T Consensus 652 ~------------------------I~triga~--------d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGT 699 (854)
T PRK05399 652 R------------------------IFTRIGAS--------DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGT 699 (854)
T ss_pred e------------------------eeeccCcc--------cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 1 11112211 11223577766666666666554 8999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcce
Q 036088 270 SGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 270 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 311 (737)
+.+|..+ .....++.+.+. |.++|++||.. ++.+++++
T Consensus 700 s~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 700 STYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred CcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 9999443 455666777665 57899999993 57777775
No 476
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.44 E-value=2.8e-07 Score=102.96 Aligned_cols=88 Identities=14% Similarity=0.176 Sum_probs=69.4
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-cceEEEECCEeCCc---c------cccceEEEEecC
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR-LKGTVTLNGEVLGS---K------LLKIISAYVMQD 183 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~-~~G~I~~~G~~~~~---~------~~~~~~~yV~Q~ 183 (737)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. .-|.|-.+|+++.. . ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46699999 9999999999999999999999999999976541 12555555555432 1 124467999999
Q ss_pred CCCCCCCCHHHHHHHhhhh
Q 036088 184 DLLYSMLTIEETLMFSAEF 202 (737)
Q Consensus 184 ~~l~~~lTV~e~l~~~~~~ 202 (737)
+..+..+++.|++.+.++.
T Consensus 221 ~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 221 ESPLMRIKATELCHAIATY 239 (434)
T ss_pred CChhhhHHHHHHHHHHHHH
Confidence 9999999999999877654
No 477
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.40 E-value=1.2e-06 Score=98.63 Aligned_cols=176 Identities=20% Similarity=0.202 Sum_probs=107.8
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCc-----------ccccceEEEEec
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS-----------KLLKIISAYVMQ 182 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-----------~~~~~~~~yV~Q 182 (737)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++ .|.+...|+.-.. ...++.+.++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~--~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD--VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC--EEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 45689999 999999999999999999999999999997644 6766665553321 112222334443
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH-HHHHHHHHHHHHhhCCc
Q 036088 183 DDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSG-GERRRVSIGVDIIHDPI 261 (737)
Q Consensus 183 ~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG-GqrqRvsiA~aL~~~p~ 261 (737)
.+. ++.+-..-+ .......+.+. ..|-. +. -.+ + .|+- -|-+| ++.
T Consensus 227 ~d~-----~p~~r~~~~-----------~~a~t~AE~fr-d~G~~-Vl-l~~-D----slTr~A~A~R-----Eis---- 273 (440)
T TIGR01026 227 SDQ-----SPLLRLKGA-----------YVATAIAEYFR-DQGKD-VL-LLM-D----SVTRFAMAQR-----EIG---- 273 (440)
T ss_pred CCC-----CHHHHHHHH-----------HHHHHHHHHHH-HCCCC-EE-EEE-e----ChHHHHHHHH-----HHH----
Confidence 322 121111100 00011122222 22321 10 000 1 1110 11111 111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCc-------EEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhH
Q 036088 262 LLFLDEP--ISGLDSTSAFNVVKVLKQIAKSGS-------IVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 262 illLDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
+.+.|| +.|+|+.....+-+++.+....+. ||++..||.. ..++|++.-+.+|+++.+....+.
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhhC
Confidence 335675 559999999999999999876666 8888899975 357899999999999998876554
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.40 E-value=2.9e-07 Score=92.88 Aligned_cols=113 Identities=18% Similarity=0.143 Sum_probs=65.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCc
Q 036088 130 ITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLS 209 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 209 (737)
+++|.||||||||||.++|++.+. .|.+ .++++|+... .++..+........ ...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~~----------------~v~~~D~~~~-~~~~~~~~~~~~~~---~~~~ 56 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPKV----------------VIISQDSYYK-DLSHEELEERKNNN---YDHP 56 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCCe----------------EEEEeccccc-ccccccHHHhccCC---CCCC
Confidence 579999999999999999999862 2333 2334443221 12333322211100 0111
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 036088 210 KEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDS 274 (737)
Q Consensus 210 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~ 274 (737)
.....+...+.++.+......+.. ....|.|++++..+ .+.+++++++|+|..+.++
T Consensus 57 ~~~~~~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 57 DAFDFDLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred CcccHHHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 111223445566666554333222 23477788776555 5688999999999999886
No 479
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.40 E-value=8.9e-08 Score=98.82 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=33.7
Q ss_pred ceeee-eEEEecCcEEEEEcCCCCcHHHHHHHHH--cCCCCCCcceEEEECCE
Q 036088 117 LLDDI-SGVASEGEITAILGASGSSKTTLMDAIA--GRISKQRLKGTVTLNGE 166 (737)
Q Consensus 117 iL~~v-s~~i~~Ge~~aI~GpsGaGKSTLL~~L~--G~~~~~~~~G~I~~~G~ 166 (737)
-|+.+ .+=+++|++++|.||+|+|||||...++ +.. .+ ++-+++...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g--~~~~~is~e 57 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DG--DPVIYVTTE 57 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cC--CeEEEEEcc
Confidence 45553 4568999999999999999999988655 432 22 355666653
No 480
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.38 E-value=9.4e-07 Score=98.88 Aligned_cols=84 Identities=20% Similarity=0.234 Sum_probs=64.1
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
|..++.++++..+.. ...+++.++ .+.+||.++|+||||+||||||++|+++.+++ .|
T Consensus 137 p~~~~r~~v~~~l~T-------------------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd--~g 194 (450)
T PRK06002 137 PPAMTRARVETGLRT-------------------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD--TV 194 (450)
T ss_pred CCCeEeecceEEcCC-------------------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ee
Confidence 445777777777753 245888886 89999999999999999999999999997654 79
Q ss_pred EEEECC---EeCCc-------ccccceEEEEecCCC
Q 036088 160 TVTLNG---EVLGS-------KLLKIISAYVMQDDL 185 (737)
Q Consensus 160 ~I~~~G---~~~~~-------~~~~~~~~yV~Q~~~ 185 (737)
.|.+.| +++.. ...++.+++|+|.+.
T Consensus 195 vv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 195 VIALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred eeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 888864 55432 112356899999764
No 481
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.33 E-value=1.1e-05 Score=98.28 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=44.0
Q ss_pred HHhhCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCcEEEEEecCCcH
Q 036088 255 DIIHDPILLFLDEPISGLD-STSAFNVVKVLKQIAKSGSIVIMSIHQPSH 303 (737)
Q Consensus 255 aL~~~p~illLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 303 (737)
.+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3457899999999999999 888999999999998889999999999864
No 482
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.26 E-value=5.3e-07 Score=89.56 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=46.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCccc-ccc-eEEEEecCCCCCCCCCHHHHHHH
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKL-LKI-ISAYVMQDDLLYSMLTIEETLMF 198 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~-~~~-~~~yV~Q~~~l~~~lTV~e~l~~ 198 (737)
+||+++|+|+||||||||+++|+|++.+ +.++|.++.... .++ ..|+.+|+...++..++.+++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999642 578888764321 221 24666776555555566555554
No 483
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.23 E-value=3.1e-06 Score=106.93 Aligned_cols=161 Identities=19% Similarity=0.301 Sum_probs=89.0
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHh
Q 036088 120 DISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFS 199 (737)
Q Consensus 120 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~ 199 (737)
=+++..+.+++++|+|++|+|||||++++++.... ...|.+++++..+... .. .+-.++... .+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~--~~--~~~~~~~~~-------~~~~~- 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKS--ME--IYSSANPDD-------YNMKL- 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccc--hh--hcccccccc-------cchhH-
Confidence 34567788999999999999999999999887653 3479998876332210 00 010010000 00000
Q ss_pred hhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 036088 200 AEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFN 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~ 279 (737)
...++.+.++++..++. +. .+ ++.|+| |..++-+|+||+- |.. .
T Consensus 266 -----------~l~~~~l~~il~~~~~~------~~-----~~-~~~~~~------L~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 266 -----------HLQRAFLSEILDKKDIK------IY-----HL-GAMEER------LKHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred -----------HHHHHHHHHHhCCCCcc------cC-----CH-HHHHHH------HhCCeEEEEEeCC----CCH---H
Confidence 11123344444444331 11 12 566666 3355667788984 433 3
Q ss_pred HHHHHHHHH---HcCcEEEEEecCCcHHHHhh-cceEEEecCCEEEeeCChhhHHHHHhhc
Q 036088 280 VVKVLKQIA---KSGSIVIMSIHQPSHRILSL-LDRLIFLSNGQAVCSEAPSNLSQFFGAF 336 (737)
Q Consensus 280 i~~~L~~l~---~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~~~~~f~~~ 336 (737)
.++.|+... ..|.+||+|||+... +... +|+++.+.. =+.++..+.|...
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~ 363 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRS 363 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHH
Confidence 445554433 347899999999643 2222 577665531 1334566666654
No 484
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.19 E-value=2e-06 Score=109.41 Aligned_cols=60 Identities=25% Similarity=0.428 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHH----HHHH--------HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCC
Q 036088 239 HRGVSGGERRRVS----IGVD--------IIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQP 301 (737)
Q Consensus 239 ~~~LSGGqrqRvs----iA~a--------L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 301 (737)
..+||||||||+. +|++ +..+|++++|||||+|||+.+...+++++.++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5644 55899999999999999999999999999988 67899999873
No 485
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.13 E-value=5.4e-05 Score=92.39 Aligned_cols=47 Identities=30% Similarity=0.289 Sum_probs=42.4
Q ss_pred HhhCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCcEEEEEecCCc
Q 036088 256 IIHDPILLFLDEPISGLD-STSAFNVVKVLKQIAKSGSIVIMSIHQPS 302 (737)
Q Consensus 256 L~~~p~illLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 302 (737)
+-.+|+++++|||+.+|| +..+..+.+.++.+.+.|.+++++||++.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 78899999999999888999999999985
No 486
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.13 E-value=0.00043 Score=72.25 Aligned_cols=189 Identities=14% Similarity=0.067 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCC-CCCcccchhhhHHHHHH-HHHHHHHHhhhHHHHHHHhHHH
Q 036088 432 MILSKRLMINSRRMPELFVVRFATVFAAAVITAGLYWQL-DNSPRGTQGRIGFFGFG-ITLIFFQCSREIPVFLQERQIF 509 (737)
Q Consensus 432 ~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~-~~~~~~~~~r~g~lf~~-~~~~~~~~~~~v~~~~~eR~vf 509 (737)
+.+.||.++.+.|.|..+..-.+..++.|+.. ..|... +....+..+..+++.+. ..+.+....-. ...+
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~l~-------~~~i 73 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPWVFLFLIPAIT-------MRSF 73 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 46789999999999999877777666666443 222111 10111112222211111 11111111112 2345
Q ss_pred HHHhcCCC--------CChHHHHHHHHHHHHHHHHHHHH---HHHhhhhcccCCC---CcHHHHHHHHHHHHHHHHHHHH
Q 036088 510 IRETAYNA--------YRVSSYLLAHSLVPIPSMIILSL---VFAATTFWAVGLA---GGFSGFLFFFIIICISFWVGSS 575 (737)
Q Consensus 510 ~RE~~~g~--------Y~~~~y~la~~l~elP~~~~~~~---if~~i~Y~m~gl~---~~~~~f~~f~~~~~l~~~~~~~ 575 (737)
.+||++|. =++..++++|.++-+-..++..+ ++....++. |.+ .+...++...+.+++...+..+
T Consensus 74 a~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~a 152 (240)
T TIGR03518 74 AEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQL-GNPVGNLDIGSTFGSYIGLLLLGSVYTA 152 (240)
T ss_pred HHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 56666665 36788999999988655443332 222222221 221 2344444444444455556678
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccccCCCCc--cchhhhhhccCcchHHHH
Q 036088 576 FIALISGLVSHVMVGFIIVACLLGYFLVFSGAYIPRDQM--RSFWVLLHYTSLVKYPFQ 632 (737)
Q Consensus 576 ~g~~i~a~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~i--p~~~~Wl~yiSp~~y~~~ 632 (737)
+|.++|+++.+...|..++..+... ++.|+.. ..++ |++.+|+.|+||..|-.+
T Consensus 153 ig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~ 208 (240)
T TIGR03518 153 IGLFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGGSAYTISELGLSYHYES 208 (240)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-HhhhcchhHHHHHHHcCHHHHHHH
Confidence 9999999998888776544333222 2222211 2233 778899999999877544
No 487
>PRK01889 GTPase RsgA; Reviewed
Probab=98.10 E-value=5.2e-06 Score=91.55 Aligned_cols=106 Identities=23% Similarity=0.215 Sum_probs=69.2
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHH
Q 036088 118 LDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLM 197 (737)
Q Consensus 118 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~ 197 (737)
++.+.-.+++|++++|+|+||+|||||++.|+|...+ ..|+|.+++........++.+.+++|+..++.+ ....++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~--~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ--KTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc--ceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhc
Confidence 3344445678999999999999999999999999764 489999987543333344567899998888865 4555554
Q ss_pred HhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 198 FSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
+.... .. -........++.+.+...+|.+
T Consensus 262 l~~~~---~~--l~~~f~~~~~~~~~c~f~~c~h 290 (356)
T PRK01889 262 LWDAE---DG--VEETFSDIEELAAQCRFRDCAH 290 (356)
T ss_pred ccCch---hh--HHHhHHHHHHHHccCCCCCCCC
Confidence 43110 00 1111233455666666665554
No 488
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.02 E-value=4.5e-05 Score=71.05 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCcEEEEEecCCc
Q 036088 247 RRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-----SGSIVIMSIHQPS 302 (737)
Q Consensus 247 rqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~~ 302 (737)
++..........++.++++||.-.. +......+.+.+..... .+..+|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444455566678999999998765 55666778888877653 4667888888643
No 489
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.01 E-value=6.8e-06 Score=66.86 Aligned_cols=37 Identities=35% Similarity=0.460 Sum_probs=30.0
Q ss_pred eeeeeEEEec-CcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 036088 118 LDDISGVASE-GEITAILGASGSSKTTLMDAIAGRISK 154 (737)
Q Consensus 118 L~~vs~~i~~-Ge~~aI~GpsGaGKSTLL~~L~G~~~~ 154 (737)
.++.++.+.+ |+++.|.|||||||||||++|.=.+.+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4556677775 579999999999999999999876643
No 490
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.00 E-value=3.9e-05 Score=81.16 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=33.5
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+.|+++.+-+.+|+++.|.||+|+|||||+..++...
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45788988899999999999999999999999887653
No 491
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.99 E-value=1.4e-05 Score=70.46 Aligned_cols=48 Identities=33% Similarity=0.516 Sum_probs=37.1
Q ss_pred CCCCCHHHH-HHHHHHHHHh------h------CCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 036088 239 HRGVSGGER-RRVSIGVDII------H------DPILLFLDEPISGLDSTSAFNVVKVLKQ 286 (737)
Q Consensus 239 ~~~LSGGqr-qRvsiA~aL~------~------~p~illLDEPTsgLD~~~~~~i~~~L~~ 286 (737)
..++||||| ..++++.+++ . .|++++||||+++||+.....++++|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 347999999 5555544332 3 3799999999999999999999999875
No 492
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=0.004 Score=65.84 Aligned_cols=202 Identities=11% Similarity=0.106 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHhcChHH-----HHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHHH-HHHH--hhh
Q 036088 427 FWIEMMILSKRLMINSRRMPEL-----FVVRFATVFAAAVITAGLYWQLDNSPRGTQGRIGFFGFGITLI-FFQC--SRE 498 (737)
Q Consensus 427 ~~~Q~~~L~~R~~~~~~Rd~~~-----~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~r~g~lf~~~~~~-~~~~--~~~ 498 (737)
.++-.+.|.+|.++..+|+... +.-=+++.+++++++|.++-. + .-+..-.++.++... +++. ...
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~-~-----~~~~~~~l~~G~~~w~f~~~~i~~~ 89 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRS-P-----GLNFLAYLLAGLILWFFFSEAISEG 89 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhC-C-----CcchHHHHHHHHHHHHHHHHHHHhH
Confidence 4677888999999998888631 122345555666666665532 1 122222233332222 2221 223
Q ss_pred HHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 036088 499 IPVFLQERQIFIRETAYNAYRVSSYLLAHSLVPIPSMIILSLVFAATTFWAVGLAGGFSGFLFFFIIICISFWVGSSFIA 578 (737)
Q Consensus 499 v~~~~~eR~vf~RE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~g~ 578 (737)
...+.+...++.|-+ ..+..+.+++++.++--..+..++....+-|.-+.. +. .++.+...+.+..+.+.++|+
T Consensus 90 ~~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s~-~~l~~~~~l~~l~l~~~g~~l 163 (263)
T COG1682 90 AGSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-SW-HWLLLLPALLLLILFSVGLGL 163 (263)
T ss_pred HHHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cH-HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555554432 378899999999987766666665555554444444 32 333333444444555567788
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCcchHHHHHHHHhHhc
Q 036088 579 LISGLVSHVMVGFIIVACLLGYFLVFSGAYIPRDQMRSFWVLLHYTSLVKYPFQSILQNEYG 640 (737)
Q Consensus 579 ~i~a~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~ 640 (737)
+++.++.-..--..+.+.++-+++..+|.+-+.+++|+-++|+.+++|+.+-.|.+=..-++
T Consensus 164 ~~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~ 225 (263)
T COG1682 164 ILASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLG 225 (263)
T ss_pred HHHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence 87777544433334556677788889999999999999999999999999999977655554
No 493
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.97 E-value=1.5e-05 Score=87.87 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=47.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCcccccccccccee-----------eeeEEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLD-----------DISGVASEGEITAILGASGSSKTTLMDAIAG 150 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G 150 (737)
.++|+||++.|+.. +.+|+ |+++.+.+|+.++|+||+|+|||||++.|+.
T Consensus 130 ri~Fe~LTf~YP~e-------------------r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~ 190 (415)
T TIGR00767 130 RVLFENLTPLYPNE-------------------RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQ 190 (415)
T ss_pred CeEEEEeeecCCCc-------------------cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHH
Confidence 69999999999742 34675 9999999999999999999999999999998
Q ss_pred CCC
Q 036088 151 RIS 153 (737)
Q Consensus 151 ~~~ 153 (737)
.+.
T Consensus 191 ~I~ 193 (415)
T TIGR00767 191 AIT 193 (415)
T ss_pred hhc
Confidence 864
No 494
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.96 E-value=8.9e-05 Score=73.99 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHH--HHHHHhh-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 036088 216 RVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVS--IGVDIIH-DPILLFLDEPISGLDSTSAFNVVKVLKQIAKS 290 (737)
Q Consensus 216 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvs--iA~aL~~-~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 290 (737)
.+.+.++..++.- -.+++ ....+++||+|++. +++.+-. +++++ |||++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 4555666665541 12222 23358999999987 5555443 34443 99999999999999999988764
No 495
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.95 E-value=1.6e-05 Score=89.30 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=70.7
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECC---EeCCc---cccc---ceEEEE----
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG---EVLGS---KLLK---IISAYV---- 180 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G---~~~~~---~~~~---~~~~yV---- 180 (737)
...+++++ +.+.+||.++|+|+||+|||||+++|+|..+. ...|.|.+.| +++.. ..++ ...+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 45689998 99999999999999999999999999998742 2247777745 44421 1111 123455
Q ss_pred -ecCCC--CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc
Q 036088 181 -MQDDL--LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR 227 (737)
Q Consensus 181 -~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 227 (737)
+|++. +.+.+ +...+.-..+......+...+...++.+.+++++|.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88752 33333 444443222222111123345677888999999884
No 496
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=97.93 E-value=0.0017 Score=68.29 Aligned_cols=95 Identities=22% Similarity=0.209 Sum_probs=56.7
Q ss_pred HHHHHHhcCCC--------CChHHHHHHHHHHHHHHHH---HHHHHH-Hh-hhhc-ccCCCCcHHHHHHHHHHHHHHHH-
Q 036088 507 QIFIRETAYNA--------YRVSSYLLAHSLVPIPSMI---ILSLVF-AA-TTFW-AVGLAGGFSGFLFFFIIICISFW- 571 (737)
Q Consensus 507 ~vf~RE~~~g~--------Y~~~~y~la~~l~elP~~~---~~~~if-~~-i~Y~-m~gl~~~~~~f~~f~~~~~l~~~- 571 (737)
..+.+|+++|. +++..++++|.++-+...+ +...+- .+ ..++ ..|...+...++...+...+..+
T Consensus 88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (277)
T PF12679_consen 88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLA 167 (277)
T ss_pred HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 34566666664 7899999999999887632 211111 11 1122 23445555555544433332222
Q ss_pred --HHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 036088 572 --VGSSFIALISGLVSHVMVGFIIVACLLGYF 601 (737)
Q Consensus 572 --~~~~~g~~i~a~~p~~~~a~~~~~~~~~~~ 601 (737)
+..++++++|+++.+...|..+...+....
T Consensus 168 ~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 168 VLVFISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 447899999999998887777665554443
No 497
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.93 E-value=1e-05 Score=80.97 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCc
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS 170 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~ 170 (737)
|++++|+||||||||||+++|++... ..+.+++..+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~~~~~~~~~~~~ 39 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----TQLLVAHRYITR 39 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----CeEEEcCEECCC
Confidence 78999999999999999999999853 257777776653
No 498
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.90 E-value=4.3e-06 Score=85.11 Aligned_cols=28 Identities=39% Similarity=0.499 Sum_probs=26.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
++|++++|+||||||||||++.|++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999864
No 499
>PRK08149 ATP synthase SpaL; Validated
Probab=97.90 E-value=1.9e-05 Score=88.36 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=54.2
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-cceEEEECCEeCCcc-------cccceEEEEecC
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQR-LKGTVTLNGEVLGSK-------LLKIISAYVMQD 183 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~-~~G~I~~~G~~~~~~-------~~~~~~~yV~Q~ 183 (737)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...++. .-|.|-.+|+++... ...+++++|+..
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 45799999 9999999999999999999999999999876441 238899999887531 122455677664
No 500
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.86 E-value=4.2e-05 Score=84.34 Aligned_cols=125 Identities=20% Similarity=0.269 Sum_probs=72.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-eEEEECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhh
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLK-GTVTLNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEF 202 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~-G~I~~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~ 202 (737)
++|.+++|.||+||||||+|++|++.+.+.+.. +.|.....|+.- ...+...+.+.|... +. +..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v--~~----~~~------ 199 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEI--PR----HLN------ 199 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeec--cc----ccc------
Confidence 588999999999999999999999987432222 355544444321 111112244555321 00 000
Q ss_pred cCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 036088 203 RLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVK 282 (737)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~ 282 (737)
+... +|-.+|-.+|+++++.|-= |.+++...++
T Consensus 200 --------------------------------------~~~~------~l~~aLR~~Pd~i~vGEiR---d~et~~~al~ 232 (358)
T TIGR02524 200 --------------------------------------NFAA------GVRNALRRKPHAILVGEAR---DAETISAALE 232 (358)
T ss_pred --------------------------------------CHHH------HHHHHhccCCCEEeeeeeC---CHHHHHHHHH
Confidence 0001 1112455689999999843 5554443332
Q ss_pred HHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 283 VLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 283 ~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
.+..|..|+.|.|-.+ +....+|++-+
T Consensus 233 ----aa~tGh~v~tTlHa~~--~~~~i~Rl~~~ 259 (358)
T TIGR02524 233 ----AALTGHPVYTTLHSSG--VAETIRRLVGS 259 (358)
T ss_pred ----HHHcCCcEEEeeccCC--HHHHHHHHHHh
Confidence 3456889999999865 45666666554
Done!