Query 036088
Match_columns 737
No_of_seqs 525 out of 3746
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 15:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 2.5E-49 8.7E-54 430.1 29.6 223 81-330 23-252 (366)
2 3tif_A Uncharacterized ABC tra 100.0 4.5E-49 1.5E-53 406.7 28.0 223 82-329 1-232 (235)
3 3rlf_A Maltose/maltodextrin im 100.0 1.3E-48 4.3E-53 427.2 29.8 218 82-330 3-222 (381)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 7.7E-49 2.6E-53 426.1 27.4 219 82-331 4-228 (359)
5 2olj_A Amino acid ABC transpor 100.0 2.1E-48 7E-53 407.9 28.7 218 82-330 24-247 (263)
6 3gfo_A Cobalt import ATP-bindi 100.0 1.1E-48 3.6E-53 412.5 26.4 221 81-331 6-233 (275)
7 1b0u_A Histidine permease; ABC 100.0 2E-48 6.7E-53 408.3 28.0 218 82-330 6-241 (262)
8 2pcj_A ABC transporter, lipopr 100.0 4.1E-48 1.4E-52 396.7 27.4 212 82-325 4-222 (224)
9 1vpl_A ABC transporter, ATP-bi 100.0 5.7E-48 2E-52 403.1 27.9 220 81-331 14-235 (256)
10 1z47_A CYSA, putative ABC-tran 100.0 8.7E-48 3E-52 417.9 29.0 220 81-330 13-234 (355)
11 1g6h_A High-affinity branched- 100.0 3.9E-48 1.3E-52 405.0 25.0 219 82-328 7-239 (257)
12 2yyz_A Sugar ABC transporter, 100.0 1.1E-47 3.7E-52 418.1 28.3 218 82-330 3-222 (359)
13 2it1_A 362AA long hypothetical 100.0 1.3E-47 4.6E-52 417.9 28.5 218 82-330 3-222 (362)
14 1g29_1 MALK, maltose transport 100.0 1.9E-47 6.6E-52 418.6 29.8 218 82-330 3-228 (372)
15 1oxx_K GLCV, glucose, ABC tran 100.0 1E-47 3.6E-52 418.2 26.8 218 82-330 3-229 (353)
16 4g1u_C Hemin import ATP-bindin 100.0 9.6E-48 3.3E-52 403.7 25.5 216 81-329 10-235 (266)
17 1ji0_A ABC transporter; ATP bi 100.0 1.1E-47 3.6E-52 397.8 25.4 217 82-330 6-227 (240)
18 1v43_A Sugar-binding transport 100.0 2.1E-47 7.3E-52 417.7 27.1 218 82-330 11-230 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 4.9E-47 1.7E-51 411.6 25.0 214 82-330 1-216 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 9.6E-47 3.3E-51 390.3 24.3 213 82-330 1-215 (240)
21 2yz2_A Putative ABC transporte 100.0 1.1E-46 3.8E-51 395.9 24.6 223 82-331 2-227 (266)
22 3nh6_A ATP-binding cassette SU 100.0 1.2E-46 3.9E-51 402.1 23.4 216 81-331 52-277 (306)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 2.4E-46 8.3E-51 389.8 24.0 219 82-328 3-230 (250)
24 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-46 3.7E-51 398.2 21.1 222 80-329 19-250 (279)
25 2zu0_C Probable ATP-dependent 100.0 1.2E-45 4E-50 388.2 26.0 226 81-331 19-254 (267)
26 2ixe_A Antigen peptide transpo 100.0 6E-46 2.1E-50 391.2 22.1 224 81-331 15-245 (271)
27 2ff7_A Alpha-hemolysin translo 100.0 1.8E-45 6.1E-50 382.6 24.1 216 81-330 6-231 (247)
28 2nq2_C Hypothetical ABC transp 100.0 8.9E-45 3E-49 378.6 27.4 210 82-329 4-215 (253)
29 2qi9_C Vitamin B12 import ATP- 100.0 4.9E-45 1.7E-49 379.4 23.8 207 82-329 4-220 (249)
30 1mv5_A LMRA, multidrug resista 100.0 1.9E-45 6.4E-50 381.6 19.8 216 82-331 1-226 (243)
31 2ghi_A Transport protein; mult 100.0 5.3E-44 1.8E-48 374.2 24.3 217 81-331 16-242 (260)
32 1sgw_A Putative ABC transporte 100.0 8.6E-45 2.9E-49 369.1 17.3 202 81-320 9-210 (214)
33 2pjz_A Hypothetical protein ST 100.0 5E-44 1.7E-48 374.6 22.2 211 82-330 1-214 (263)
34 3qf4_A ABC transporter, ATP-bi 100.0 6.1E-44 2.1E-48 414.5 19.4 219 81-331 340-566 (587)
35 4a82_A Cystic fibrosis transme 100.0 9.4E-44 3.2E-48 412.5 20.5 218 80-331 337-564 (578)
36 2pze_A Cystic fibrosis transme 100.0 3.4E-43 1.2E-47 361.5 21.7 204 82-330 6-217 (229)
37 3gd7_A Fusion complex of cysti 100.0 9.7E-44 3.3E-48 391.1 18.4 216 81-331 18-242 (390)
38 2yl4_A ATP-binding cassette SU 100.0 1.2E-42 4.2E-47 404.5 25.4 220 82-331 340-570 (595)
39 2cbz_A Multidrug resistance-as 100.0 7E-43 2.4E-47 360.9 20.7 211 82-331 3-217 (237)
40 3b60_A Lipid A export ATP-bind 100.0 1.5E-42 5.3E-47 402.7 25.1 218 81-331 340-567 (582)
41 3qf4_B Uncharacterized ABC tra 100.0 3.6E-43 1.2E-47 409.0 18.7 216 81-331 353-578 (598)
42 3b5x_A Lipid A export ATP-bind 100.0 1E-42 3.6E-47 404.1 22.0 218 81-331 340-567 (582)
43 4f4c_A Multidrug resistance pr 100.0 7E-43 2.4E-47 437.8 16.5 220 81-331 1075-1304(1321)
44 4f4c_A Multidrug resistance pr 100.0 3.2E-42 1.1E-46 431.7 20.9 220 81-331 414-641 (1321)
45 3g5u_A MCG1178, multidrug resi 100.0 3E-40 1E-44 413.0 22.4 220 81-331 386-613 (1284)
46 2bbs_A Cystic fibrosis transme 100.0 2.7E-40 9.3E-45 350.9 18.2 199 82-330 40-246 (290)
47 3g5u_A MCG1178, multidrug resi 100.0 1.4E-39 4.6E-44 407.1 17.7 222 81-331 1029-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 2E-36 6.7E-41 351.1 22.6 206 80-331 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 2.1E-36 7.3E-41 347.1 20.7 206 80-331 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1E-35 3.5E-40 340.9 20.7 207 80-330 267-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 5.5E-34 1.9E-38 330.2 20.7 192 115-331 360-559 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 3.7E-34 1.3E-38 337.6 17.4 208 114-330 30-297 (670)
53 2iw3_A Elongation factor 3A; a 100.0 3.4E-33 1.2E-37 334.8 25.5 199 81-331 434-635 (986)
54 3bk7_A ABC transporter ATP-bin 100.0 8.1E-35 2.8E-39 337.6 10.9 182 116-318 106-304 (607)
55 1yqt_A RNAse L inhibitor; ATP- 100.0 1.4E-34 4.8E-39 332.0 11.3 182 116-318 36-234 (538)
56 2iw3_A Elongation factor 3A; a 100.0 7.4E-34 2.5E-38 340.5 15.7 209 80-325 669-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.3E-32 4.4E-37 324.5 19.0 197 115-330 335-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 1.9E-31 6.4E-36 309.0 12.2 189 115-322 91-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1E-31 3.5E-36 307.7 8.3 174 125-320 22-215 (538)
60 3pih_A Uvrabc system protein A 100.0 1.5E-29 5.2E-34 303.1 24.4 201 115-330 597-901 (916)
61 2vf7_A UVRA2, excinuclease ABC 100.0 1.1E-29 3.9E-34 301.9 20.4 198 117-330 512-826 (842)
62 2r6f_A Excinuclease ABC subuni 100.0 8.4E-30 2.9E-34 303.3 17.3 198 117-330 639-941 (972)
63 2ygr_A Uvrabc system protein A 100.0 2.7E-29 9.3E-34 299.9 17.8 199 117-331 657-960 (993)
64 4aby_A DNA repair protein RECN 100.0 2.5E-28 8.7E-33 271.4 18.7 203 116-323 49-380 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 5.9E-31 2E-35 295.9 -7.3 186 118-329 128-336 (460)
66 3b85_A Phosphate starvation-in 99.9 9.5E-29 3.3E-33 250.1 -12.0 144 113-302 11-159 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.9E-25 2.3E-29 240.3 16.9 83 238-322 276-364 (365)
68 1e69_A Chromosome segregation 99.9 1.4E-24 4.7E-29 234.0 13.3 87 239-328 217-310 (322)
69 4gp7_A Metallophosphoesterase; 99.9 2.5E-25 8.7E-30 217.8 3.9 143 120-302 1-160 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 1.1E-26 3.7E-31 257.1 -9.9 176 115-318 36-254 (413)
71 2v9p_A Replication protein E1; 99.9 4E-28 1.4E-32 258.4 -20.8 169 82-335 101-270 (305)
72 1ye8_A Protein THEP1, hypothet 99.9 6.1E-24 2.1E-28 209.7 5.5 146 130-322 2-159 (178)
73 1znw_A Guanylate kinase, GMP k 99.9 1.6E-26 5.5E-31 233.0 -16.1 182 114-317 8-203 (207)
74 3b9q_A Chloroplast SRP recepto 99.9 1.5E-23 5.2E-28 223.6 -1.0 174 118-320 90-284 (302)
75 3sop_A Neuronal-specific septi 99.9 1.3E-23 4.6E-28 220.7 -2.8 148 130-302 4-151 (270)
76 2dpy_A FLII, flagellum-specifi 99.8 4.6E-23 1.6E-27 230.5 -3.5 177 115-329 145-342 (438)
77 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.9E-22 6.6E-27 217.8 0.7 132 117-320 160-292 (330)
78 2og2_A Putative signal recogni 99.8 1.6E-22 5.6E-27 220.0 -0.9 173 119-320 148-341 (359)
79 2o5v_A DNA replication and rep 99.8 1.9E-20 6.6E-25 203.9 14.6 84 238-329 261-354 (359)
80 1z6g_A Guanylate kinase; struc 99.8 7.7E-25 2.6E-29 222.9 -18.8 153 115-289 10-175 (218)
81 1cr0_A DNA primase/helicase; R 99.8 1.5E-21 5E-26 207.3 2.6 185 115-320 22-237 (296)
82 3qkt_A DNA double-strand break 99.8 8.6E-20 2.9E-24 197.9 15.3 77 238-316 245-327 (339)
83 3pih_A Uvrabc system protein A 99.8 1.8E-20 6.2E-25 224.8 10.1 163 144-331 384-560 (916)
84 4ad8_A DNA repair protein RECN 99.8 4.9E-20 1.7E-24 210.8 11.7 77 239-318 394-473 (517)
85 3aez_A Pantothenate kinase; tr 99.8 4E-23 1.4E-27 221.4 -13.1 160 125-319 87-246 (312)
86 2jeo_A Uridine-cytidine kinase 99.8 4.4E-21 1.5E-25 198.3 -0.5 176 114-331 11-187 (245)
87 2obl_A ESCN; ATPase, hydrolase 99.8 3.1E-21 1.1E-25 209.5 -2.2 192 82-329 45-253 (347)
88 2o8b_B DNA mismatch repair pro 99.8 3.9E-20 1.3E-24 225.3 3.7 175 81-328 749-939 (1022)
89 1tf7_A KAIC; homohexamer, hexa 99.8 6.3E-22 2.2E-26 226.9 -12.5 170 114-319 24-211 (525)
90 1tf7_A KAIC; homohexamer, hexa 99.8 4.1E-19 1.4E-23 203.5 9.4 156 122-319 275-444 (525)
91 2r6f_A Excinuclease ABC subuni 99.8 2.2E-18 7.4E-23 205.6 15.7 136 187-330 449-599 (972)
92 3thx_A DNA mismatch repair pro 99.8 9.6E-19 3.3E-23 210.7 11.7 152 114-329 648-811 (934)
93 2vf7_A UVRA2, excinuclease ABC 99.8 1.1E-18 3.7E-23 207.8 10.3 179 136-330 270-474 (842)
94 2ygr_A Uvrabc system protein A 99.7 3.5E-18 1.2E-22 204.5 14.2 138 186-331 465-617 (993)
95 2ehv_A Hypothetical protein PH 99.7 9.2E-20 3.1E-24 187.2 -0.6 162 124-316 26-206 (251)
96 2eyu_A Twitching motility prot 99.7 4.2E-19 1.5E-23 185.5 3.5 133 116-317 15-147 (261)
97 4a74_A DNA repair and recombin 99.7 3.1E-19 1.1E-23 181.0 0.6 153 123-319 20-201 (231)
98 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 8.2E-18 2.8E-22 160.7 9.9 81 237-319 53-141 (148)
99 2qnr_A Septin-2, protein NEDD5 99.7 6.2E-20 2.1E-24 195.8 -7.0 156 114-302 10-168 (301)
100 3asz_A Uridine kinase; cytidin 99.7 1.3E-20 4.5E-25 189.5 -12.2 146 125-302 3-162 (211)
101 1w1w_A Structural maintenance 99.7 4.7E-17 1.6E-21 181.9 13.6 74 241-316 333-410 (430)
102 3szr_A Interferon-induced GTP- 99.7 2.3E-19 8E-24 208.7 -5.3 195 80-331 8-237 (608)
103 1ewq_A DNA mismatch repair pro 99.7 3.4E-18 1.2E-22 202.5 4.3 147 114-324 565-717 (765)
104 3thx_B DNA mismatch repair pro 99.7 2.4E-17 8.2E-22 198.1 10.4 155 114-322 659-816 (918)
105 1rj9_A FTSY, signal recognitio 99.7 1.8E-18 6.2E-23 184.5 0.4 149 127-302 101-259 (304)
106 1pzn_A RAD51, DNA repair and r 99.7 2.3E-18 7.9E-23 187.3 -1.1 166 117-326 119-310 (349)
107 2i3b_A HCR-ntpase, human cance 99.7 3.4E-19 1.2E-23 177.3 -8.6 156 128-323 1-168 (189)
108 1wb9_A DNA mismatch repair pro 99.7 1.4E-17 4.9E-22 198.2 3.4 157 114-325 594-752 (800)
109 2w0m_A SSO2452; RECA, SSPF, un 99.6 2.7E-17 9.2E-22 166.5 1.8 168 115-318 9-192 (235)
110 3jvv_A Twitching mobility prot 99.6 5.7E-17 1.9E-21 176.5 4.2 133 117-318 114-246 (356)
111 1nlf_A Regulatory protein REPA 99.6 6.4E-16 2.2E-20 162.5 11.2 151 124-302 26-182 (279)
112 1pui_A ENGB, probable GTP-bind 99.6 4.3E-18 1.5E-22 170.1 -5.8 179 82-293 3-202 (210)
113 2qag_C Septin-7; cell cycle, c 99.6 1.8E-17 6.1E-22 183.9 -3.7 163 82-301 11-177 (418)
114 1s96_A Guanylate kinase, GMP k 99.6 9.9E-17 3.4E-21 163.2 -1.2 151 121-334 9-163 (219)
115 2bdt_A BH3686; alpha-beta prot 99.5 7.6E-19 2.6E-23 173.6 -20.2 170 128-330 2-183 (189)
116 2cvh_A DNA repair and recombin 99.5 6.3E-15 2.2E-19 148.1 7.1 155 115-318 6-185 (220)
117 3kta_B Chromosome segregation 99.5 2.2E-14 7.5E-19 140.4 10.7 78 239-319 62-145 (173)
118 2qag_B Septin-6, protein NEDD5 99.5 3.6E-16 1.2E-20 173.0 -4.0 172 115-300 28-218 (427)
119 1lw7_A Transcriptional regulat 99.5 9.8E-18 3.3E-22 183.4 -16.5 173 117-328 157-352 (365)
120 1zp6_A Hypothetical protein AT 99.5 5.3E-17 1.8E-21 160.2 -12.0 153 125-299 6-159 (191)
121 2ewv_A Twitching motility prot 99.5 4.4E-15 1.5E-19 162.8 2.0 132 116-316 126-257 (372)
122 2gza_A Type IV secretion syste 99.5 5.5E-15 1.9E-19 161.4 2.7 139 117-320 164-304 (361)
123 1nij_A Hypothetical protein YJ 99.5 1.4E-17 4.8E-22 178.9 -18.9 156 129-302 5-190 (318)
124 2bbw_A Adenylate kinase 4, AK4 99.4 1.2E-16 3.9E-21 165.0 -14.0 147 127-291 26-200 (246)
125 2f1r_A Molybdopterin-guanine d 99.4 4.6E-16 1.6E-20 152.2 -9.4 138 129-291 3-163 (171)
126 2rcn_A Probable GTPase ENGC; Y 99.4 6.5E-14 2.2E-18 151.9 5.5 121 118-256 206-328 (358)
127 1htw_A HI0065; nucleotide-bind 99.4 6.8E-15 2.3E-19 142.0 -2.9 79 114-198 19-97 (158)
128 1n0w_A DNA repair protein RAD5 99.4 2.8E-13 9.7E-18 138.1 8.9 152 123-318 19-209 (243)
129 2yhs_A FTSY, cell division pro 99.4 6.8E-15 2.3E-19 164.8 -3.8 154 118-300 283-448 (503)
130 3auy_A DNA double-strand break 99.4 9E-13 3.1E-17 144.4 11.4 77 238-317 277-360 (371)
131 1odf_A YGR205W, hypothetical 3 99.4 2.2E-14 7.6E-19 151.9 -3.4 132 126-276 29-169 (290)
132 3e70_C DPA, signal recognition 99.4 7.4E-14 2.5E-18 150.3 0.3 143 126-301 127-279 (328)
133 2qm8_A GTPase/ATPase; G protei 99.3 3.8E-15 1.3E-19 161.2 -10.7 163 115-289 42-260 (337)
134 2kjq_A DNAA-related protein; s 99.3 4.3E-13 1.5E-17 128.1 4.2 96 115-302 28-126 (149)
135 3ec2_A DNA replication protein 99.3 3.3E-13 1.1E-17 132.0 2.6 47 257-303 98-145 (180)
136 1udx_A The GTP-binding protein 99.3 8.7E-14 3E-18 154.2 -2.7 170 118-312 147-319 (416)
137 2yv5_A YJEQ protein; hydrolase 99.3 2.3E-13 7.9E-18 145.0 -0.9 121 126-255 163-301 (302)
138 1sxj_E Activator 1 40 kDa subu 99.3 3.3E-12 1.1E-16 138.0 6.7 136 131-303 39-176 (354)
139 1p9r_A General secretion pathw 99.3 2.7E-15 9.4E-20 166.5 -18.0 137 115-265 156-315 (418)
140 2oap_1 GSPE-2, type II secreti 99.2 1.4E-14 4.8E-19 164.8 -13.9 178 115-309 247-457 (511)
141 3c8u_A Fructokinase; YP_612366 99.2 3.2E-14 1.1E-18 143.0 -10.6 164 125-333 19-183 (208)
142 3lda_A DNA repair protein RAD5 99.2 3E-11 1E-15 133.2 11.6 153 123-319 173-364 (400)
143 1lvg_A Guanylate kinase, GMP k 99.2 1.8E-15 6.1E-20 151.3 -22.3 153 126-317 2-173 (198)
144 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 8.8E-14 3E-18 152.9 -14.2 170 124-327 16-209 (392)
145 1u0l_A Probable GTPase ENGC; p 99.1 7.9E-12 2.7E-16 133.0 -1.7 101 125-234 166-289 (301)
146 1in4_A RUVB, holliday junction 99.1 6.2E-13 2.1E-17 143.5 -11.2 168 114-311 30-211 (334)
147 1t9h_A YLOQ, probable GTPase E 99.0 2.4E-11 8.4E-16 129.3 0.6 119 123-249 168-303 (307)
148 2dr3_A UPF0273 protein PH0284; 99.0 3.2E-11 1.1E-15 123.0 -0.7 60 258-317 127-196 (247)
149 2x8a_A Nuclear valosin-contain 99.0 1.2E-13 4E-18 145.2 -19.3 129 114-270 32-164 (274)
150 1vma_A Cell division protein F 99.0 2.6E-10 9E-15 121.4 4.7 114 121-289 97-213 (306)
151 2r6a_A DNAB helicase, replicat 98.9 2.6E-10 8.8E-15 128.2 2.8 181 115-320 190-401 (454)
152 2ius_A DNA translocase FTSK; n 98.9 7E-11 2.4E-15 133.7 -3.8 165 120-302 159-343 (512)
153 3tr0_A Guanylate kinase, GMP k 98.9 3.6E-11 1.2E-15 119.4 -5.7 70 122-197 1-73 (205)
154 2zr9_A Protein RECA, recombina 98.9 3.4E-09 1.2E-13 115.0 8.9 78 248-325 126-237 (349)
155 3lnc_A Guanylate kinase, GMP k 98.8 3.5E-13 1.2E-17 137.4 -21.8 39 115-153 14-53 (231)
156 1ls1_A Signal recognition part 98.8 4.3E-09 1.5E-13 111.6 8.7 118 119-287 91-209 (295)
157 1sq5_A Pantothenate kinase; P- 98.8 1.4E-10 4.7E-15 123.8 -2.9 86 116-203 49-156 (308)
158 2px0_A Flagellar biosynthesis 98.8 4.5E-09 1.5E-13 111.5 8.3 141 126-323 103-247 (296)
159 3euj_A Chromosome partition pr 98.8 1.6E-09 5.3E-14 121.8 4.2 52 115-169 17-68 (483)
160 1oix_A RAS-related protein RAB 98.8 1.1E-09 3.7E-14 108.0 0.7 141 130-287 31-189 (191)
161 1iy2_A ATP-dependent metallopr 98.8 3.1E-12 1.1E-16 134.2 -18.7 124 115-262 62-190 (278)
162 3k1j_A LON protease, ATP-depen 98.7 1.5E-10 5.3E-15 134.6 -6.9 160 114-286 46-227 (604)
163 1ixz_A ATP-dependent metallopr 98.7 4.7E-12 1.6E-16 130.7 -18.5 124 115-262 38-166 (254)
164 1qhl_A Protein (cell division 98.6 1.5E-09 5.2E-14 110.6 -3.9 59 122-183 22-91 (227)
165 3hr8_A Protein RECA; alpha and 98.5 2.9E-08 1E-12 107.6 3.7 71 124-196 57-128 (356)
166 2f9l_A RAB11B, member RAS onco 98.5 4.1E-08 1.4E-12 96.9 2.9 37 250-288 130-166 (199)
167 2ce7_A Cell division protein F 98.5 1.1E-07 3.7E-12 107.1 6.6 59 244-302 93-165 (476)
168 1svm_A Large T antigen; AAA+ f 98.4 3.9E-10 1.3E-14 123.4 -14.7 143 115-270 156-312 (377)
169 2qtf_A Protein HFLX, GTP-bindi 98.4 2.5E-07 8.6E-12 100.8 7.6 151 127-289 177-353 (364)
170 4eun_A Thermoresistant glucoki 98.4 8.4E-09 2.9E-13 102.5 -4.1 62 118-185 19-82 (200)
171 3nwj_A ATSK2; P loop, shikimat 98.3 6.8E-08 2.3E-12 99.8 -1.6 52 82-152 17-72 (250)
172 4a1f_A DNAB helicase, replicat 98.2 6.5E-07 2.2E-11 96.3 5.6 129 115-298 33-163 (338)
173 2xau_A PRE-mRNA-splicing facto 98.2 1.1E-06 3.7E-11 104.9 7.9 73 240-313 189-263 (773)
174 3kta_A Chromosome segregation 98.2 6.1E-07 2.1E-11 87.2 3.6 37 117-154 14-52 (182)
175 2j41_A Guanylate kinase; GMP, 98.1 7.3E-07 2.5E-11 88.1 2.6 31 124-154 2-32 (207)
176 1jjv_A Dephospho-COA kinase; P 98.1 2.8E-07 9.6E-12 91.5 -1.1 127 130-316 4-131 (206)
177 2dhr_A FTSH; AAA+ protein, hex 98.1 1.2E-08 4.1E-13 115.5 -12.8 129 115-269 53-186 (499)
178 2e87_A Hypothetical protein PH 98.1 4.6E-06 1.6E-10 90.5 7.3 61 240-302 230-293 (357)
179 1zu4_A FTSY; GTPase, signal re 98.1 5.2E-07 1.8E-11 96.6 -0.2 77 118-196 95-184 (320)
180 3a00_A Guanylate kinase, GMP k 98.0 8.2E-07 2.8E-11 87.0 1.0 26 128-153 1-26 (186)
181 3t34_A Dynamin-related protein 98.0 1.1E-05 3.8E-10 87.4 9.7 57 242-299 155-212 (360)
182 3tqc_A Pantothenate kinase; bi 98.0 5.4E-08 1.8E-12 104.1 -8.5 39 115-153 73-117 (321)
183 2dy1_A Elongation factor G; tr 98.0 2.1E-06 7.1E-11 100.8 3.9 132 122-302 3-137 (665)
184 4e22_A Cytidylate kinase; P-lo 98.0 4.9E-07 1.7E-11 93.3 -1.6 63 117-184 19-96 (252)
185 1fnn_A CDC6P, cell division co 98.0 1.9E-05 6.4E-10 85.5 10.6 44 258-302 124-170 (389)
186 3uie_A Adenylyl-sulfate kinase 98.0 2.9E-07 1E-11 91.3 -3.6 52 115-169 12-65 (200)
187 3vaa_A Shikimate kinase, SK; s 98.0 3.1E-06 1.1E-10 83.7 3.6 39 114-152 11-49 (199)
188 2z4s_A Chromosomal replication 97.9 2.5E-06 8.7E-11 95.2 2.0 70 258-327 193-264 (440)
189 3b9p_A CG5977-PA, isoform A; A 97.9 7E-05 2.4E-09 78.3 12.7 74 243-316 97-187 (297)
190 1kgd_A CASK, peripheral plasma 97.8 6.4E-06 2.2E-10 80.2 3.3 37 127-164 4-40 (180)
191 2vp4_A Deoxynucleoside kinase; 97.8 4.1E-06 1.4E-10 85.0 1.6 38 125-168 17-54 (230)
192 1v5w_A DMC1, meiotic recombina 97.8 0.0001 3.5E-09 79.5 11.7 144 118-301 111-274 (343)
193 2z43_A DNA repair and recombin 97.8 0.0001 3.5E-09 78.7 11.3 146 117-301 95-258 (324)
194 1ega_A Protein (GTP-binding pr 97.7 2.1E-05 7.3E-10 83.2 5.3 152 128-313 8-170 (301)
195 3bh0_A DNAB-like replicative h 97.7 3.7E-05 1.3E-09 81.9 6.4 132 115-299 55-189 (315)
196 3tau_A Guanylate kinase, GMP k 97.7 2E-05 6.9E-10 78.5 4.0 29 126-154 6-34 (208)
197 2qt1_A Nicotinamide riboside k 97.6 2.3E-05 7.8E-10 77.7 3.9 29 124-152 17-45 (207)
198 3ney_A 55 kDa erythrocyte memb 97.6 1.8E-05 6.1E-10 78.7 2.4 28 126-153 17-44 (197)
199 1knq_A Gluconate kinase; ALFA/ 97.6 1.5E-05 5.2E-10 76.6 1.6 37 126-168 6-42 (175)
200 1rz3_A Hypothetical protein rb 97.6 1E-05 3.5E-10 80.2 0.1 41 125-167 19-59 (201)
201 3kl4_A SRP54, signal recogniti 97.5 0.00012 4.2E-09 81.2 8.2 38 127-166 96-133 (433)
202 2qby_A CDC6 homolog 1, cell di 97.5 1.4E-05 4.9E-10 86.0 0.6 28 126-153 43-70 (386)
203 3cf0_A Transitional endoplasmi 97.5 0.00013 4.4E-09 77.0 6.8 29 124-152 45-73 (301)
204 3cr8_A Sulfate adenylyltranfer 97.4 2.6E-05 8.9E-10 89.3 0.6 43 124-168 365-409 (552)
205 1lv7_A FTSH; alpha/beta domain 97.4 0.00041 1.4E-08 71.0 9.4 34 117-152 36-69 (257)
206 1kag_A SKI, shikimate kinase I 97.4 6E-05 2.1E-09 72.1 2.7 26 127-152 3-28 (173)
207 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 9.6E-05 3.3E-09 69.9 3.8 31 119-150 15-45 (149)
208 3llm_A ATP-dependent RNA helic 97.3 5.2E-05 1.8E-09 76.9 2.0 67 243-311 162-229 (235)
209 1ypw_A Transitional endoplasmi 97.3 0.00016 5.3E-09 86.8 5.0 30 124-153 234-263 (806)
210 1mky_A Probable GTP-binding pr 97.2 0.00025 8.6E-09 78.9 6.1 68 130-197 182-262 (439)
211 3ice_A Transcription terminati 97.2 3.3E-05 1.1E-09 83.9 -1.3 33 120-152 166-198 (422)
212 1u94_A RECA protein, recombina 97.2 0.00087 3E-08 72.6 9.7 35 117-151 50-86 (356)
213 2q6t_A DNAB replication FORK h 97.2 0.0012 4.1E-08 73.6 11.0 154 115-300 187-362 (444)
214 2p67_A LAO/AO transport system 97.2 3.1E-05 1.1E-09 83.4 -2.2 52 115-168 43-94 (341)
215 3lxx_A GTPase IMAP family memb 97.1 0.0037 1.3E-07 63.1 12.9 24 130-153 31-54 (239)
216 2gj8_A MNME, tRNA modification 97.1 0.00046 1.6E-08 66.1 5.6 27 126-152 2-28 (172)
217 1l8q_A Chromosomal replication 97.1 0.0012 4.2E-08 69.8 9.1 45 257-301 96-141 (324)
218 2w58_A DNAI, primosome compone 97.1 0.00079 2.7E-08 66.0 7.0 24 129-152 55-78 (202)
219 3h4m_A Proteasome-activating n 97.0 0.0008 2.7E-08 69.7 7.0 28 125-152 48-75 (285)
220 3m6a_A ATP-dependent protease 97.0 9.3E-05 3.2E-09 84.8 -0.2 50 115-167 96-145 (543)
221 2qag_A Septin-2, protein NEDD5 97.0 2.2E-05 7.4E-10 85.4 -5.4 46 114-167 29-74 (361)
222 2www_A Methylmalonic aciduria 97.0 0.00014 4.7E-09 78.6 0.9 42 126-169 72-113 (349)
223 3qks_A DNA double-strand break 97.0 0.00041 1.4E-08 68.9 3.8 31 120-151 16-46 (203)
224 4eaq_A DTMP kinase, thymidylat 96.9 0.00034 1.2E-08 70.9 3.2 37 117-153 12-51 (229)
225 1m2o_B GTP-binding protein SAR 96.9 0.00073 2.5E-08 65.7 5.4 36 115-151 11-46 (190)
226 1cke_A CK, MSSA, protein (cyti 96.9 0.00044 1.5E-08 69.1 3.6 57 128-184 5-74 (227)
227 2b8t_A Thymidine kinase; deoxy 96.9 0.0011 3.9E-08 66.9 6.2 53 259-316 89-150 (223)
228 2pez_A Bifunctional 3'-phospho 96.8 0.00056 1.9E-08 65.9 3.6 40 126-168 3-44 (179)
229 1f6b_A SAR1; gtpases, N-termin 96.8 0.00026 9E-09 69.4 1.1 36 115-151 13-48 (198)
230 3bos_A Putative DNA replicatio 96.8 0.00072 2.5E-08 67.5 4.3 44 258-301 103-148 (242)
231 3d8b_A Fidgetin-like protein 1 96.8 0.0052 1.8E-07 66.2 11.2 27 126-152 115-141 (357)
232 2qor_A Guanylate kinase; phosp 96.8 0.0006 2.1E-08 67.3 3.1 28 125-152 9-36 (204)
233 2wji_A Ferrous iron transport 96.7 0.0016 5.6E-08 61.5 6.0 23 130-152 5-27 (165)
234 1m7g_A Adenylylsulfate kinase; 96.7 0.00033 1.1E-08 69.7 1.0 41 125-167 22-64 (211)
235 1y63_A LMAJ004144AAA protein; 96.7 0.00071 2.4E-08 65.7 3.0 32 120-151 2-33 (184)
236 3bgw_A DNAB-like replicative h 96.6 0.0046 1.6E-07 68.9 8.9 36 116-151 185-220 (444)
237 2v1u_A Cell division control p 96.6 0.0018 6E-08 69.6 5.4 27 126-152 42-68 (387)
238 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0058 2E-07 62.0 8.9 27 126-152 37-63 (262)
239 2i1q_A DNA repair and recombin 96.5 0.0095 3.2E-07 63.1 10.8 34 117-150 86-120 (322)
240 2if2_A Dephospho-COA kinase; a 96.5 0.001 3.6E-08 65.2 3.1 22 130-151 3-24 (204)
241 2ffh_A Protein (FFH); SRP54, s 96.5 0.00055 1.9E-08 75.7 1.1 47 119-169 91-137 (425)
242 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.022 7.4E-07 60.5 13.3 27 126-152 43-69 (322)
243 2wjg_A FEOB, ferrous iron tran 96.4 0.0022 7.6E-08 61.4 4.8 22 130-151 9-30 (188)
244 3auy_A DNA double-strand break 96.4 0.0018 6.2E-08 70.3 4.0 32 117-149 15-46 (371)
245 1np6_A Molybdopterin-guanine d 96.3 0.0018 6.1E-08 62.8 3.3 39 129-167 7-46 (174)
246 3cmw_A Protein RECA, recombina 96.3 0.0098 3.4E-07 75.7 10.8 29 124-152 728-756 (1706)
247 2ga8_A Hypothetical 39.9 kDa p 96.3 0.00043 1.5E-08 74.6 -1.3 38 115-152 9-48 (359)
248 2p5t_B PEZT; postsegregational 96.3 0.00088 3E-08 68.7 0.9 47 117-168 22-68 (253)
249 2yvu_A Probable adenylyl-sulfa 96.3 0.0021 7.3E-08 62.1 3.4 28 126-153 11-38 (186)
250 3t61_A Gluconokinase; PSI-biol 96.2 0.0018 6.2E-08 63.5 2.9 25 128-152 18-42 (202)
251 1j8m_F SRP54, signal recogniti 96.2 0.00047 1.6E-08 72.8 -1.8 47 119-168 89-136 (297)
252 3cm0_A Adenylate kinase; ATP-b 96.2 0.0024 8.2E-08 61.5 3.3 26 126-151 2-27 (186)
253 2ohf_A Protein OLA1, GTP-bindi 96.1 0.0021 7.3E-08 70.3 2.9 43 124-166 18-69 (396)
254 3kb2_A SPBC2 prophage-derived 96.1 0.0028 9.7E-08 59.9 3.4 23 130-152 3-25 (173)
255 1sxj_C Activator 1 40 kDa subu 96.1 0.00063 2.2E-08 72.7 -1.3 40 114-153 30-71 (340)
256 1qhx_A CPT, protein (chloramph 96.1 0.0032 1.1E-07 60.1 3.7 26 128-153 3-28 (178)
257 1q57_A DNA primase/helicase; d 96.0 0.044 1.5E-06 61.8 13.1 36 116-151 230-265 (503)
258 1q3t_A Cytidylate kinase; nucl 95.9 0.0036 1.2E-07 63.2 3.5 27 125-151 13-39 (236)
259 2zej_A Dardarin, leucine-rich 95.9 0.0032 1.1E-07 60.6 3.0 23 130-152 4-26 (184)
260 1xx6_A Thymidine kinase; NESG, 95.9 0.0071 2.4E-07 59.5 5.4 53 259-316 81-142 (191)
261 1kht_A Adenylate kinase; phosp 95.9 0.0044 1.5E-07 59.6 3.6 26 127-152 2-27 (192)
262 3r20_A Cytidylate kinase; stru 95.8 0.0043 1.5E-07 63.0 3.5 25 128-152 9-33 (233)
263 2rhm_A Putative kinase; P-loop 95.7 0.0044 1.5E-07 59.8 3.0 26 126-151 3-28 (193)
264 2r8r_A Sensor protein; KDPD, P 95.7 0.0054 1.9E-07 61.9 3.7 45 255-299 80-125 (228)
265 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.015 5.3E-07 61.7 7.3 34 118-151 113-146 (331)
266 1ex7_A Guanylate kinase; subst 95.7 0.005 1.7E-07 60.3 3.2 23 130-152 3-25 (186)
267 3vfd_A Spastin; ATPase, microt 95.7 0.057 1.9E-06 58.6 11.9 27 126-152 146-172 (389)
268 2ze6_A Isopentenyl transferase 95.6 0.0053 1.8E-07 63.0 3.3 23 130-152 3-25 (253)
269 1vht_A Dephospho-COA kinase; s 95.6 0.0059 2E-07 60.6 3.5 24 127-150 3-26 (218)
270 3lw7_A Adenylate kinase relate 95.6 0.0059 2E-07 57.4 3.3 19 130-148 3-21 (179)
271 2j9r_A Thymidine kinase; TK1, 95.6 0.019 6.6E-07 57.4 7.1 53 259-316 101-162 (214)
272 1gvn_B Zeta; postsegregational 95.6 0.006 2.1E-07 63.8 3.5 36 126-165 31-66 (287)
273 2qp9_X Vacuolar protein sortin 95.6 0.038 1.3E-06 59.4 9.9 27 126-152 82-108 (355)
274 3trf_A Shikimate kinase, SK; a 95.5 0.0069 2.3E-07 58.2 3.6 26 127-152 4-29 (185)
275 2v54_A DTMP kinase, thymidylat 95.5 0.0073 2.5E-07 58.9 3.8 26 127-152 3-28 (204)
276 2jaq_A Deoxyguanosine kinase; 95.5 0.0067 2.3E-07 58.9 3.5 23 130-152 2-24 (205)
277 1xp8_A RECA protein, recombina 95.5 0.017 5.9E-07 62.6 7.0 28 124-151 70-97 (366)
278 3iij_A Coilin-interacting nucl 95.5 0.0061 2.1E-07 58.5 3.1 25 127-151 10-34 (180)
279 2plr_A DTMP kinase, probable t 95.4 0.0082 2.8E-07 58.7 3.7 27 127-153 3-29 (213)
280 1gtv_A TMK, thymidylate kinase 95.4 0.0037 1.3E-07 61.5 1.0 24 130-153 2-25 (214)
281 3cmu_A Protein RECA, recombina 95.4 0.033 1.1E-06 71.9 9.8 35 117-151 370-406 (2050)
282 2wwf_A Thymidilate kinase, put 95.3 0.0086 3E-07 58.7 3.6 27 126-152 8-34 (212)
283 3ihw_A Centg3; RAS, centaurin, 95.3 0.017 5.8E-07 55.6 5.6 22 130-151 22-43 (184)
284 1ly1_A Polynucleotide kinase; 95.3 0.0089 3.1E-07 56.8 3.5 22 129-150 3-24 (181)
285 3eie_A Vacuolar protein sortin 95.3 0.04 1.4E-06 58.2 8.9 26 126-151 49-74 (322)
286 1uf9_A TT1252 protein; P-loop, 95.3 0.0087 3E-07 58.2 3.4 24 128-151 8-31 (203)
287 1via_A Shikimate kinase; struc 95.3 0.0088 3E-07 57.1 3.2 23 130-152 6-28 (175)
288 2c95_A Adenylate kinase 1; tra 95.3 0.0089 3E-07 57.8 3.3 26 126-151 7-32 (196)
289 4dcu_A GTP-binding protein ENG 95.2 0.027 9.1E-07 62.8 7.5 53 246-302 89-142 (456)
290 3io5_A Recombination and repai 95.2 0.013 4.6E-07 62.0 4.7 28 123-151 24-52 (333)
291 1xjc_A MOBB protein homolog; s 95.2 0.0099 3.4E-07 57.3 3.3 25 129-153 5-29 (169)
292 1nn5_A Similar to deoxythymidy 95.2 0.01 3.5E-07 58.3 3.4 27 126-152 7-33 (215)
293 1nks_A Adenylate kinase; therm 95.1 0.01 3.5E-07 57.0 3.2 23 130-152 3-25 (194)
294 3k53_A Ferrous iron transport 95.1 0.01 3.4E-07 61.3 3.2 23 130-152 5-27 (271)
295 1tev_A UMP-CMP kinase; ploop, 95.0 0.013 4.4E-07 56.4 3.6 25 127-151 2-26 (196)
296 3hu3_A Transitional endoplasmi 95.0 0.03 1E-06 63.1 6.9 28 125-152 235-262 (489)
297 3cmw_A Protein RECA, recombina 94.9 0.057 1.9E-06 68.9 9.9 35 117-151 370-406 (1706)
298 1ko7_A HPR kinase/phosphatase; 94.9 0.018 6.2E-07 60.9 4.7 36 115-151 132-167 (314)
299 1jal_A YCHF protein; nucleotid 94.9 0.021 7E-07 61.8 5.2 38 128-165 2-48 (363)
300 2bwj_A Adenylate kinase 5; pho 94.9 0.011 3.8E-07 57.2 2.8 27 126-152 10-36 (199)
301 2ged_A SR-beta, signal recogni 94.9 0.013 4.6E-07 56.2 3.3 24 129-152 49-72 (193)
302 4b4t_J 26S protease regulatory 94.9 0.14 4.7E-06 56.1 11.6 24 129-152 183-206 (405)
303 1z2a_A RAS-related protein RAB 94.8 0.013 4.5E-07 54.5 3.0 23 130-152 7-29 (168)
304 2nzj_A GTP-binding protein REM 94.8 0.015 5E-07 54.6 3.3 23 130-152 6-28 (175)
305 2erx_A GTP-binding protein DI- 94.8 0.015 5.2E-07 54.1 3.3 22 130-151 5-26 (172)
306 2z0h_A DTMP kinase, thymidylat 94.8 0.015 5.2E-07 56.1 3.4 23 130-152 2-24 (197)
307 1aky_A Adenylate kinase; ATP:A 94.8 0.016 5.6E-07 57.4 3.7 26 127-152 3-28 (220)
308 3ake_A Cytidylate kinase; CMP 94.7 0.015 5.1E-07 56.7 3.3 23 130-152 4-26 (208)
309 1kao_A RAP2A; GTP-binding prot 94.7 0.015 5.1E-07 53.8 3.1 23 130-152 5-27 (167)
310 3q72_A GTP-binding protein RAD 94.7 0.012 4.2E-07 54.7 2.5 23 130-152 4-26 (166)
311 2vli_A Antibiotic resistance p 94.7 0.012 4E-07 56.3 2.4 26 127-152 4-29 (183)
312 2dyk_A GTP-binding protein; GT 94.7 0.015 5.3E-07 53.6 3.1 23 130-152 3-25 (161)
313 1u8z_A RAS-related protein RAL 94.7 0.015 5.2E-07 53.8 3.0 23 130-152 6-28 (168)
314 2ce2_X GTPase HRAS; signaling 94.7 0.014 4.9E-07 53.8 2.8 23 130-152 5-27 (166)
315 3q85_A GTP-binding protein REM 94.6 0.017 5.8E-07 53.9 3.2 23 130-152 4-26 (169)
316 1zd8_A GTP:AMP phosphotransfer 94.6 0.017 5.8E-07 57.7 3.4 27 126-152 5-31 (227)
317 3co5_A Putative two-component 94.6 0.038 1.3E-06 51.1 5.5 42 259-301 75-116 (143)
318 1z0j_A RAB-22, RAS-related pro 94.6 0.017 5.7E-07 53.8 3.1 23 130-152 8-30 (170)
319 4ag6_A VIRB4 ATPase, type IV s 94.6 0.011 3.7E-07 64.4 2.1 45 259-303 262-309 (392)
320 1z08_A RAS-related protein RAB 94.6 0.017 5.7E-07 53.9 3.1 23 130-152 8-30 (170)
321 1ek0_A Protein (GTP-binding pr 94.5 0.017 5.8E-07 53.7 3.0 23 130-152 5-27 (170)
322 2lkc_A Translation initiation 94.5 0.021 7.2E-07 53.7 3.7 26 127-152 7-32 (178)
323 3b1v_A Ferrous iron uptake tra 94.5 0.018 6.3E-07 59.7 3.5 23 130-152 5-27 (272)
324 1g16_A RAS-related protein SEC 94.5 0.016 5.5E-07 53.9 2.8 23 130-152 5-27 (170)
325 1wms_A RAB-9, RAB9, RAS-relate 94.5 0.017 6E-07 54.3 3.1 23 130-152 9-31 (177)
326 1c1y_A RAS-related protein RAP 94.5 0.017 6E-07 53.5 3.0 23 130-152 5-27 (167)
327 3tw8_B RAS-related protein RAB 94.5 0.016 5.4E-07 54.6 2.7 23 130-152 11-33 (181)
328 1ky3_A GTP-binding protein YPT 94.5 0.018 6.1E-07 54.3 3.1 23 130-152 10-32 (182)
329 3fb4_A Adenylate kinase; psych 94.5 0.019 6.6E-07 56.6 3.4 22 130-151 2-23 (216)
330 2orv_A Thymidine kinase; TP4A 94.5 0.13 4.4E-06 51.9 9.4 53 258-316 89-150 (234)
331 3iev_A GTP-binding protein ERA 94.5 0.018 6.1E-07 60.8 3.3 25 127-152 10-34 (308)
332 1fzq_A ADP-ribosylation factor 94.4 0.015 5.2E-07 55.6 2.5 22 130-151 18-39 (181)
333 2cdn_A Adenylate kinase; phosp 94.4 0.022 7.6E-07 55.6 3.7 26 127-152 19-44 (201)
334 1svi_A GTP-binding protein YSX 94.4 0.017 5.8E-07 55.5 2.8 23 130-152 25-47 (195)
335 2fn4_A P23, RAS-related protei 94.4 0.018 6.1E-07 54.2 2.9 23 130-152 11-33 (181)
336 3lxw_A GTPase IMAP family memb 94.4 0.019 6.5E-07 58.5 3.2 23 130-152 23-45 (247)
337 2pbr_A DTMP kinase, thymidylat 94.4 0.021 7.2E-07 54.9 3.4 23 130-152 2-24 (195)
338 1zak_A Adenylate kinase; ATP:A 94.4 0.018 6.1E-07 57.3 2.9 26 127-152 4-29 (222)
339 1e6c_A Shikimate kinase; phosp 94.3 0.019 6.6E-07 54.2 2.9 22 130-151 4-25 (173)
340 3pqc_A Probable GTP-binding pr 94.3 0.02 6.9E-07 54.7 3.0 23 130-152 25-47 (195)
341 1r2q_A RAS-related protein RAB 94.3 0.021 7.1E-07 53.1 3.0 22 130-151 8-29 (170)
342 3clv_A RAB5 protein, putative; 94.3 0.021 7.1E-07 54.7 3.1 23 130-152 9-31 (208)
343 4dsu_A GTPase KRAS, isoform 2B 94.3 0.021 7.2E-07 54.2 3.1 23 130-152 6-28 (189)
344 1ukz_A Uridylate kinase; trans 94.3 0.023 7.9E-07 55.4 3.4 24 128-151 15-38 (203)
345 2hxs_A RAB-26, RAS-related pro 94.3 0.023 7.9E-07 53.4 3.3 23 130-152 8-30 (178)
346 3dl0_A Adenylate kinase; phosp 94.3 0.023 7.9E-07 56.1 3.4 23 130-152 2-24 (216)
347 2cxx_A Probable GTP-binding pr 94.2 0.02 6.7E-07 54.6 2.8 23 130-152 3-25 (190)
348 1zuh_A Shikimate kinase; alpha 94.2 0.026 8.8E-07 53.4 3.5 24 128-151 7-30 (168)
349 2pt5_A Shikimate kinase, SK; a 94.2 0.025 8.7E-07 53.2 3.5 22 130-151 2-23 (168)
350 1upt_A ARL1, ADP-ribosylation 94.2 0.022 7.5E-07 53.1 3.0 22 130-151 9-30 (171)
351 3bc1_A RAS-related protein RAB 94.2 0.022 7.6E-07 54.2 3.0 23 130-152 13-35 (195)
352 3a4m_A L-seryl-tRNA(SEC) kinas 94.2 0.026 8.8E-07 57.9 3.7 25 127-151 3-27 (260)
353 2oil_A CATX-8, RAS-related pro 94.2 0.022 7.6E-07 54.7 3.0 23 130-152 27-49 (193)
354 1r8s_A ADP-ribosylation factor 94.2 0.023 7.9E-07 52.7 3.0 21 131-151 3-23 (164)
355 2iyv_A Shikimate kinase, SK; t 94.1 0.021 7.2E-07 54.8 2.8 24 129-152 3-26 (184)
356 1qf9_A UMP/CMP kinase, protein 94.1 0.026 8.7E-07 54.1 3.3 24 128-151 6-29 (194)
357 2y8e_A RAB-protein 6, GH09086P 94.1 0.023 7.8E-07 53.4 2.8 22 130-151 16-37 (179)
358 2g6b_A RAS-related protein RAB 94.0 0.025 8.5E-07 53.3 3.0 23 130-152 12-34 (180)
359 3t1o_A Gliding protein MGLA; G 94.0 0.028 9.4E-07 53.7 3.4 24 130-153 16-39 (198)
360 2a9k_A RAS-related protein RAL 94.0 0.025 8.6E-07 53.5 3.0 23 130-152 20-42 (187)
361 1wf3_A GTP-binding protein; GT 94.0 0.027 9.1E-07 59.3 3.5 26 126-152 6-31 (301)
362 1z0f_A RAB14, member RAS oncog 94.0 0.026 8.8E-07 53.0 3.0 23 130-152 17-39 (179)
363 2qmh_A HPR kinase/phosphorylas 94.0 0.043 1.5E-06 54.2 4.6 36 115-151 22-57 (205)
364 3tlx_A Adenylate kinase 2; str 94.0 0.029 1E-06 56.9 3.6 25 127-151 28-52 (243)
365 2efe_B Small GTP-binding prote 93.9 0.027 9.2E-07 53.1 3.1 23 130-152 14-36 (181)
366 1moz_A ARL1, ADP-ribosylation 93.9 0.016 5.5E-07 54.9 1.5 23 128-150 18-40 (183)
367 3con_A GTPase NRAS; structural 93.9 0.027 9.1E-07 53.9 3.0 23 130-152 23-45 (190)
368 1uj2_A Uridine-cytidine kinase 93.9 0.029 9.9E-07 57.1 3.4 24 129-152 23-46 (252)
369 3t5d_A Septin-7; GTP-binding p 93.9 0.023 7.9E-07 58.7 2.6 23 130-152 10-32 (274)
370 1nrj_B SR-beta, signal recogni 93.8 0.028 9.5E-07 55.2 3.0 23 130-152 14-36 (218)
371 2bme_A RAB4A, RAS-related prot 93.8 0.027 9.2E-07 53.5 2.8 23 130-152 12-34 (186)
372 2bov_A RAla, RAS-related prote 93.8 0.029 9.8E-07 54.2 3.0 23 130-152 16-38 (206)
373 1vg8_A RAS-related protein RAB 93.8 0.029 1E-06 54.3 3.1 23 130-152 10-32 (207)
374 2grj_A Dephospho-COA kinase; T 93.8 0.033 1.1E-06 54.7 3.4 24 128-151 12-35 (192)
375 3iby_A Ferrous iron transport 93.8 0.03 1E-06 57.4 3.2 23 130-152 3-25 (256)
376 2gf9_A RAS-related protein RAB 93.8 0.03 1E-06 53.6 3.0 23 130-152 24-46 (189)
377 3a8t_A Adenylate isopentenyltr 93.7 0.049 1.7E-06 58.2 4.9 26 127-152 39-64 (339)
378 3tkl_A RAS-related protein RAB 93.7 0.03 1E-06 53.6 3.0 23 130-152 18-40 (196)
379 2gf0_A GTP-binding protein DI- 93.7 0.029 9.9E-07 53.9 2.9 22 130-151 10-31 (199)
380 2dby_A GTP-binding protein; GD 93.7 0.028 9.6E-07 60.9 3.0 21 131-151 4-24 (368)
381 3bwd_D RAC-like GTP-binding pr 93.7 0.037 1.3E-06 52.2 3.6 23 130-152 10-32 (182)
382 1ksh_A ARF-like protein 2; sma 93.7 0.031 1E-06 53.3 2.9 26 127-152 17-42 (186)
383 1m7b_A RND3/RHOE small GTP-bin 93.7 0.03 1E-06 53.5 2.8 23 130-152 9-31 (184)
384 2fg5_A RAB-22B, RAS-related pr 93.7 0.03 1E-06 53.9 2.9 23 130-152 25-47 (192)
385 2xtp_A GTPase IMAP family memb 93.7 0.031 1E-06 56.9 3.0 23 130-152 24-46 (260)
386 3kkq_A RAS-related protein M-R 93.6 0.033 1.1E-06 52.8 3.0 23 130-152 20-42 (183)
387 3cbq_A GTP-binding protein REM 93.6 0.025 8.4E-07 55.0 2.2 22 130-151 25-46 (195)
388 3v9p_A DTMP kinase, thymidylat 93.6 0.03 1E-06 56.6 2.8 28 125-152 22-49 (227)
389 3llu_A RAS-related GTP-binding 93.6 0.032 1.1E-06 54.0 3.0 24 130-153 22-45 (196)
390 1a7j_A Phosphoribulokinase; tr 93.6 0.019 6.4E-07 60.2 1.4 25 127-151 4-28 (290)
391 1jbk_A CLPB protein; beta barr 93.6 0.04 1.4E-06 52.0 3.6 27 126-152 41-67 (195)
392 1mh1_A RAC1; GTP-binding, GTPa 93.6 0.033 1.1E-06 52.7 3.0 22 130-151 7-28 (186)
393 2wsm_A Hydrogenase expression/ 93.6 0.034 1.2E-06 54.8 3.1 24 129-152 31-54 (221)
394 1zbd_A Rabphilin-3A; G protein 93.6 0.036 1.2E-06 53.7 3.2 23 130-152 10-32 (203)
395 3be4_A Adenylate kinase; malar 93.5 0.036 1.2E-06 54.9 3.3 26 127-152 4-29 (217)
396 2cjw_A GTP-binding protein GEM 93.5 0.034 1.2E-06 53.8 3.0 22 130-151 8-29 (192)
397 2f6r_A COA synthase, bifunctio 93.5 0.035 1.2E-06 57.7 3.2 22 129-150 76-97 (281)
398 1z06_A RAS-related protein RAB 93.5 0.035 1.2E-06 53.1 3.1 22 130-151 22-43 (189)
399 2xb4_A Adenylate kinase; ATP-b 93.5 0.039 1.3E-06 55.1 3.5 22 130-151 2-23 (223)
400 3oes_A GTPase rhebl1; small GT 93.5 0.033 1.1E-06 54.0 2.8 23 130-152 26-48 (201)
401 3a1s_A Iron(II) transport prot 93.4 0.041 1.4E-06 56.4 3.5 23 130-152 7-29 (258)
402 4edh_A DTMP kinase, thymidylat 93.4 0.045 1.5E-06 54.6 3.6 28 126-153 4-31 (213)
403 2il1_A RAB12; G-protein, GDP, 93.4 0.034 1.2E-06 53.6 2.7 23 130-152 28-50 (192)
404 2a5j_A RAS-related protein RAB 93.4 0.038 1.3E-06 53.1 3.0 23 130-152 23-45 (191)
405 3dz8_A RAS-related protein RAB 93.4 0.035 1.2E-06 53.3 2.8 23 130-152 25-47 (191)
406 3t5g_A GTP-binding protein RHE 93.4 0.036 1.2E-06 52.4 2.8 22 130-151 8-29 (181)
407 4fcw_A Chaperone protein CLPB; 93.4 0.04 1.4E-06 57.3 3.4 26 128-153 47-72 (311)
408 1jwy_B Dynamin A GTPase domain 93.3 0.037 1.2E-06 57.9 3.1 23 130-152 26-48 (315)
409 3i8s_A Ferrous iron transport 93.3 0.039 1.3E-06 57.0 3.3 23 130-152 5-27 (274)
410 2bcg_Y Protein YP2, GTP-bindin 93.3 0.036 1.2E-06 53.9 2.8 23 130-152 10-32 (206)
411 3def_A T7I23.11 protein; chlor 93.3 0.075 2.6E-06 54.3 5.4 23 130-152 38-60 (262)
412 4dhe_A Probable GTP-binding pr 93.3 0.022 7.6E-07 56.1 1.3 23 130-152 31-53 (223)
413 2o52_A RAS-related protein RAB 93.3 0.038 1.3E-06 53.7 3.0 23 130-152 27-49 (200)
414 1zj6_A ADP-ribosylation factor 93.3 0.039 1.3E-06 52.7 3.0 23 129-151 17-39 (187)
415 1zd9_A ADP-ribosylation factor 93.3 0.039 1.3E-06 52.9 3.0 23 130-152 24-46 (188)
416 1x3s_A RAS-related protein RAB 93.3 0.039 1.3E-06 52.6 3.0 23 130-152 17-39 (195)
417 2atv_A RERG, RAS-like estrogen 93.3 0.04 1.4E-06 53.1 3.1 23 130-152 30-52 (196)
418 3reg_A RHO-like small GTPase; 93.3 0.04 1.4E-06 52.9 3.0 23 130-152 25-47 (194)
419 3cph_A RAS-related protein SEC 93.3 0.04 1.4E-06 53.6 3.0 24 129-152 21-44 (213)
420 2qu8_A Putative nucleolar GTP- 93.2 0.038 1.3E-06 54.9 2.9 22 130-151 31-52 (228)
421 2h57_A ADP-ribosylation factor 93.2 0.03 1E-06 53.6 2.1 23 130-152 23-45 (190)
422 2ew1_A RAS-related protein RAB 93.2 0.038 1.3E-06 54.1 2.8 23 130-152 28-50 (201)
423 2p5s_A RAS and EF-hand domain 93.2 0.042 1.4E-06 53.2 3.0 23 130-152 30-52 (199)
424 2f7s_A C25KG, RAS-related prot 93.2 0.045 1.5E-06 53.6 3.3 23 130-152 27-49 (217)
425 2h17_A ADP-ribosylation factor 93.2 0.036 1.2E-06 52.7 2.5 22 130-151 23-44 (181)
426 4bas_A ADP-ribosylation factor 93.2 0.039 1.3E-06 52.9 2.8 23 130-152 19-41 (199)
427 1e4v_A Adenylate kinase; trans 93.2 0.044 1.5E-06 54.1 3.2 22 130-151 2-23 (214)
428 3cmu_A Protein RECA, recombina 93.1 0.15 5.2E-06 65.9 8.7 36 117-152 719-756 (2050)
429 1ltq_A Polynucleotide kinase; 93.1 0.048 1.6E-06 56.7 3.5 23 129-151 3-25 (301)
430 2fv8_A H6, RHO-related GTP-bin 93.1 0.042 1.4E-06 53.6 2.9 23 130-152 27-49 (207)
431 2iwr_A Centaurin gamma 1; ANK 93.1 0.035 1.2E-06 52.3 2.2 22 130-151 9-30 (178)
432 3lv8_A DTMP kinase, thymidylat 93.0 0.05 1.7E-06 55.2 3.4 27 127-153 26-52 (236)
433 1ak2_A Adenylate kinase isoenz 93.0 0.055 1.9E-06 54.2 3.7 26 127-152 15-40 (233)
434 1sky_E F1-ATPase, F1-ATP synth 93.0 0.054 1.9E-06 60.3 3.9 35 117-152 141-175 (473)
435 2q3h_A RAS homolog gene family 93.0 0.049 1.7E-06 52.6 3.2 23 130-152 22-44 (201)
436 3c5c_A RAS-like protein 12; GD 93.0 0.048 1.6E-06 52.3 3.1 23 130-152 23-45 (187)
437 3umf_A Adenylate kinase; rossm 92.9 0.054 1.8E-06 54.3 3.4 27 126-152 27-53 (217)
438 1gwn_A RHO-related GTP-binding 92.9 0.045 1.5E-06 53.7 2.8 23 130-152 30-52 (205)
439 2aka_B Dynamin-1; fusion prote 92.9 0.043 1.5E-06 56.8 2.8 23 130-152 28-50 (299)
440 2j1l_A RHO-related GTP-binding 92.9 0.049 1.7E-06 53.6 3.1 22 130-151 36-57 (214)
441 2fh5_B SR-beta, signal recogni 92.9 0.049 1.7E-06 53.2 3.0 23 130-152 9-31 (214)
442 3d3q_A TRNA delta(2)-isopenten 92.9 0.053 1.8E-06 58.0 3.4 24 129-152 8-31 (340)
443 3zvl_A Bifunctional polynucleo 92.8 0.05 1.7E-06 59.9 3.3 26 126-151 256-281 (416)
444 3exa_A TRNA delta(2)-isopenten 92.8 0.06 2E-06 56.9 3.7 25 128-152 3-27 (322)
445 2p65_A Hypothetical protein PF 92.8 0.05 1.7E-06 51.4 2.8 26 127-152 42-67 (187)
446 2fu5_C RAS-related protein RAB 92.8 0.034 1.2E-06 52.7 1.6 22 130-151 10-31 (183)
447 2gco_A H9, RHO-related GTP-bin 92.7 0.05 1.7E-06 52.8 2.8 23 130-152 27-49 (201)
448 4tmk_A Protein (thymidylate ki 92.7 0.061 2.1E-06 53.6 3.5 27 127-153 2-28 (213)
449 3tmk_A Thymidylate kinase; pho 92.7 0.06 2.1E-06 53.9 3.4 28 126-153 3-30 (216)
450 2b6h_A ADP-ribosylation factor 92.6 0.047 1.6E-06 52.7 2.5 22 130-151 31-52 (192)
451 2ocp_A DGK, deoxyguanosine kin 92.6 0.063 2.2E-06 54.0 3.5 26 127-152 1-26 (241)
452 2atx_A Small GTP binding prote 92.5 0.056 1.9E-06 51.8 2.9 23 130-152 20-42 (194)
453 3ld9_A DTMP kinase, thymidylat 92.5 0.069 2.4E-06 53.7 3.6 28 126-153 19-46 (223)
454 2zts_A Putative uncharacterize 92.5 0.082 2.8E-06 52.7 4.1 59 258-316 134-206 (251)
455 3tqf_A HPR(Ser) kinase; transf 92.5 0.1 3.4E-06 50.5 4.4 36 115-151 4-39 (181)
456 1njg_A DNA polymerase III subu 92.5 0.069 2.4E-06 52.3 3.5 43 258-302 125-167 (250)
457 2g3y_A GTP-binding protein GEM 92.5 0.065 2.2E-06 53.2 3.3 22 130-151 39-60 (211)
458 2h92_A Cytidylate kinase; ross 92.4 0.061 2.1E-06 53.0 3.0 25 128-152 3-27 (219)
459 2hf9_A Probable hydrogenase ni 92.4 0.062 2.1E-06 53.1 3.0 24 129-152 39-62 (226)
460 1h65_A Chloroplast outer envel 92.4 0.064 2.2E-06 55.1 3.2 23 130-152 41-63 (270)
461 3crm_A TRNA delta(2)-isopenten 92.3 0.07 2.4E-06 56.7 3.5 24 129-152 6-29 (323)
462 1p5z_B DCK, deoxycytidine kina 92.2 0.047 1.6E-06 55.8 2.0 27 126-152 22-48 (263)
463 3cpj_B GTP-binding protein YPT 92.1 0.07 2.4E-06 52.7 3.1 23 130-152 15-37 (223)
464 2hup_A RAS-related protein RAB 92.1 0.066 2.3E-06 52.0 2.9 23 130-152 31-53 (201)
465 4djt_A GTP-binding nuclear pro 92.1 0.032 1.1E-06 54.7 0.6 22 130-151 13-34 (218)
466 3sr0_A Adenylate kinase; phosp 92.0 0.083 2.8E-06 52.4 3.4 23 130-152 2-24 (206)
467 2x77_A ADP-ribosylation factor 91.9 0.047 1.6E-06 52.1 1.5 22 130-151 24-45 (189)
468 3euj_A Chromosome partition pr 91.9 0.18 6.2E-06 56.4 6.3 71 239-316 377-464 (483)
469 1sxj_D Activator 1 41 kDa subu 91.8 0.025 8.7E-07 59.8 -0.6 42 259-302 133-174 (353)
470 2yc2_C IFT27, small RAB-relate 91.8 0.034 1.2E-06 53.7 0.4 22 130-151 22-43 (208)
471 4gzl_A RAS-related C3 botulinu 91.8 0.074 2.5E-06 51.8 2.8 23 129-151 31-53 (204)
472 3cnl_A YLQF, putative uncharac 91.8 0.083 2.8E-06 54.4 3.2 25 129-153 100-124 (262)
473 3q3j_B RHO-related GTP-binding 91.7 0.083 2.8E-06 52.0 3.0 23 130-152 29-51 (214)
474 2j0v_A RAC-like GTP-binding pr 91.7 0.078 2.7E-06 51.7 2.8 23 130-152 11-33 (212)
475 3pxi_A Negative regulator of g 91.6 0.28 9.7E-06 58.0 8.1 23 130-152 523-545 (758)
476 3foz_A TRNA delta(2)-isopenten 91.6 0.1 3.4E-06 55.1 3.7 25 128-152 10-34 (316)
477 3eph_A TRNA isopentenyltransfe 91.3 0.1 3.4E-06 57.1 3.4 24 129-152 3-26 (409)
478 1mky_A Probable GTP-binding pr 90.8 0.21 7.3E-06 55.1 5.5 23 130-152 3-25 (439)
479 4a9a_A Ribosome-interacting GT 90.7 0.15 5E-06 55.4 4.0 39 130-168 74-121 (376)
480 2orw_A Thymidine kinase; TMTK, 90.7 0.14 4.8E-06 49.6 3.4 53 259-316 76-137 (184)
481 1ypw_A Transitional endoplasmi 90.7 0.041 1.4E-06 65.8 -0.5 32 121-152 504-535 (806)
482 3r7w_A Gtpase1, GTP-binding pr 90.7 0.13 4.3E-06 54.1 3.4 24 128-151 3-26 (307)
483 2chg_A Replication factor C sm 90.5 0.13 4.6E-06 49.6 3.2 41 259-301 102-142 (226)
484 3n70_A Transport activator; si 90.5 0.13 4.4E-06 47.5 2.9 27 126-152 22-48 (145)
485 3syl_A Protein CBBX; photosynt 90.3 0.15 5.1E-06 52.9 3.5 26 127-152 66-91 (309)
486 3p32_A Probable GTPase RV1496/ 90.3 0.15 5.1E-06 54.7 3.6 26 127-152 78-103 (355)
487 2hjg_A GTP-binding protein ENG 90.2 0.12 4.1E-06 57.1 2.8 22 130-151 5-26 (436)
488 3gmt_A Adenylate kinase; ssgci 90.2 0.15 5.1E-06 51.5 3.2 23 130-152 10-32 (230)
489 1puj_A YLQF, conserved hypothe 90.2 0.15 5.3E-06 52.9 3.4 24 129-152 121-144 (282)
490 1wxq_A GTP-binding protein; st 90.1 0.13 4.6E-06 56.1 3.1 42 215-265 180-221 (397)
491 3th5_A RAS-related C3 botulinu 89.6 0.056 1.9E-06 52.5 0.0 22 130-151 32-53 (204)
492 2r62_A Cell division protease 90.1 0.071 2.4E-06 54.3 0.8 22 131-152 47-68 (268)
493 3gee_A MNME, tRNA modification 90.1 0.14 4.9E-06 57.3 3.3 25 127-151 232-256 (476)
494 3geh_A MNME, tRNA modification 90.1 0.12 4.1E-06 57.7 2.6 25 127-151 223-247 (462)
495 2x2e_A Dynamin-1; nitration, h 89.9 0.1 3.4E-06 56.0 1.8 23 130-152 33-55 (353)
496 1g5t_A COB(I)alamin adenosyltr 89.8 0.21 7.1E-06 49.1 3.8 72 247-319 106-181 (196)
497 3gj0_A GTP-binding nuclear pro 89.8 0.11 3.7E-06 51.1 1.8 22 130-151 17-39 (221)
498 3l0i_B RAS-related protein RAB 89.5 0.038 1.3E-06 53.5 -1.8 23 130-152 35-57 (199)
499 1d2n_A N-ethylmaleimide-sensit 89.5 0.18 6.1E-06 51.6 3.3 26 126-151 62-87 (272)
500 1f5n_A Interferon-induced guan 89.4 0.15 5E-06 58.7 2.7 33 117-152 30-62 (592)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.5e-49 Score=430.10 Aligned_cols=223 Identities=23% Similarity=0.388 Sum_probs=198.5
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+.+. +.+.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+
T Consensus 23 ~mi~v~~ls~~y~~~~----------------~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~--~G~ 84 (366)
T 3tui_C 23 HMIKLSNITKVFHQGT----------------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--EGS 84 (366)
T ss_dssp CCEEEEEEEEEEECSS----------------SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEE
T ss_pred ceEEEEeEEEEeCCCC----------------CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC--ceE
Confidence 4799999999997421 1356999999999999999999999999999999999998754 999
Q ss_pred EEECCEeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 161 VTLNGEVLGSK------LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 161 I~~~G~~~~~~------~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
|.++|+++... ..|+.+|||||++.+++.+||+||+.|+...+ ..++++.+++++++|+.+||.+.++..+
T Consensus 85 I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~ 161 (366)
T 3tui_C 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP 161 (366)
T ss_dssp EEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCT
T ss_pred EEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh
Confidence 99999998642 23567999999999999999999999987654 3466777889999999999998776554
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
..|||||||||+|||||+.+|++|||||||||||+.++..+++.|++++++ |.|||++||++. .+.++||||+
T Consensus 162 -----~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~ 235 (366)
T 3tui_C 162 -----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVA 235 (366)
T ss_dssp -----TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEE
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEE
Confidence 479999999999999999999999999999999999999999999999765 999999999986 5888999999
Q ss_pred EecCCEEEeeCChhhHH
Q 036088 314 FLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~ 330 (737)
+|++|++++.|+++++.
T Consensus 236 vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 236 VISNGELIEQDTVSEVF 252 (366)
T ss_dssp EEETTEEEECCBHHHHH
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999998874
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.5e-49 Score=406.73 Aligned_cols=223 Identities=23% Similarity=0.386 Sum_probs=191.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+.+. ..+.+|+||||++++||++||+||||||||||||+|+|+++|. +|+|
T Consensus 1 ~l~~~~l~~~y~~~~----------------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~--~G~I 62 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE----------------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT--EGEV 62 (235)
T ss_dssp CEEEEEEEEEEEETT----------------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEE
T ss_pred CEEEEEEEEEeCCCC----------------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ceEE
Confidence 489999999997421 1356999999999999999999999999999999999998754 9999
Q ss_pred EECCEeCCccc-------ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccc-ccc
Q 036088 162 TLNGEVLGSKL-------LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAA-MTI 233 (737)
Q Consensus 162 ~~~G~~~~~~~-------~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ 233 (737)
.++|+++.... .++.+|||+|++.+++.+||+||+.++...+........+..+++.++++.+||.+.. +..
T Consensus 63 ~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 142 (235)
T 3tif_A 63 YIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK 142 (235)
T ss_dssp EETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC
T ss_pred EECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC
Confidence 99999986421 1345899999999999999999999986544222345666778899999999997643 444
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 312 (737)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. +.++||+|
T Consensus 143 -----~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i 215 (235)
T 3tif_A 143 -----PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERI 215 (235)
T ss_dssp -----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEE
T ss_pred -----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEE
Confidence 4479999999999999999999999999999999999999999999999765 999999999985 45899999
Q ss_pred EEecCCEEEeeCChhhH
Q 036088 313 IFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~ 329 (737)
++|++|+++..++++++
T Consensus 216 ~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 216 IYLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEEETTEEEEEEECC--
T ss_pred EEEECCEEEEEcChhhh
Confidence 99999999999887765
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.3e-48 Score=427.16 Aligned_cols=218 Identities=25% Similarity=0.413 Sum_probs=197.5
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+++|. .+.+|+||||++++||+++|+||||||||||||+|+|+++++ +|+|
T Consensus 3 ~l~~~~l~~~yg--------------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~G~I 60 (381)
T 3rlf_A 3 SVQLQNVTKAWG--------------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT--SGDL 60 (381)
T ss_dssp CEEEEEEEEEET--------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEE
T ss_pred EEEEEeEEEEEC--------------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC--CeEE
Confidence 589999999995 356999999999999999999999999999999999998754 9999
Q ss_pred EECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
.++|+++... ..++.+|||+|+..+||++||+||+.|+.+.+ ..++++.+++++++++.+||.+..++.+ .
T Consensus 61 ~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~ 132 (381)
T 3rlf_A 61 FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----K 132 (381)
T ss_dssp EETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG-----G
T ss_pred EECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 9999998643 34566899999999999999999999987654 3567777889999999999998776555 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
+|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++ |.|+|++|||+. ++..+||||++|++|+
T Consensus 133 ~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~ 211 (381)
T 3rlf_A 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 211 (381)
T ss_dssp GSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999765 999999999986 5899999999999999
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
++..|+++++.
T Consensus 212 i~~~g~~~~l~ 222 (381)
T 3rlf_A 212 VAQVGKPLELY 222 (381)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEeCHHHHH
Confidence 99999999874
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=7.7e-49 Score=426.09 Aligned_cols=219 Identities=26% Similarity=0.441 Sum_probs=194.4
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|. .+.+|+||||++++||+++|+||||||||||||+|+|+.+|+ +|+|
T Consensus 4 ~l~i~~ls~~y~--------------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~G~I 61 (359)
T 3fvq_A 4 ALHIGHLSKSFQ--------------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEI 61 (359)
T ss_dssp CEEEEEEEEEET--------------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS--EEEE
T ss_pred EEEEEeEEEEEC--------------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC--CcEE
Confidence 699999999995 356999999999999999999999999999999999998754 9999
Q ss_pred EECCEeC----Cc-ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC
Q 036088 162 TLNGEVL----GS-KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD 236 (737)
Q Consensus 162 ~~~G~~~----~~-~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 236 (737)
.++|+++ .. ...++.+|||+|+..+|+++||+||+.|+...+ ..++++.+++++++++.+||.+..++.+
T Consensus 62 ~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-- 136 (359)
T 3fvq_A 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-- 136 (359)
T ss_dssp EETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG--
T ss_pred EECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh--
Confidence 9999987 22 234567899999999999999999999986543 2345666788999999999998876655
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIA-KSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
..|||||||||+|||||+.+|++|||||||||||+..+.++++.|+++. +.|+|+|++|||.. ++..+||||++|
T Consensus 137 ---~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl 212 (359)
T 3fvq_A 137 ---HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVM 212 (359)
T ss_dssp ---GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEE
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEE
Confidence 4699999999999999999999999999999999999999999888875 45999999999986 588999999999
Q ss_pred cCCEEEeeCChhhHHH
Q 036088 316 SNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 316 ~~G~iv~~G~~~~~~~ 331 (737)
++|+++..|+++++..
T Consensus 213 ~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 213 KQGRILQTASPHELYR 228 (359)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEEeCHHHHHh
Confidence 9999999999998743
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.1e-48 Score=407.87 Aligned_cols=218 Identities=25% Similarity=0.426 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ ++++|+||||++++||+++|+||||||||||||+|+|+++|. +|+|
T Consensus 24 ~l~i~~l~~~y~--------------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~--~G~I 81 (263)
T 2olj_A 24 MIDVHQLKKSFG--------------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEI 81 (263)
T ss_dssp SEEEEEEEEEET--------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEE
T ss_pred eEEEEeEEEEEC--------------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC--CcEE
Confidence 699999999995 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCC--c---ccccceEEEEecCCCCCCCCCHHHHHHHhh-hhcCCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 036088 162 TLNGEVLG--S---KLLKIISAYVMQDDLLYSMLTIEETLMFSA-EFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG 235 (737)
Q Consensus 162 ~~~G~~~~--~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 235 (737)
.++|+++. . ...++.+|||+|++.+++.+||+||+.++. ... ..+..+.+++++++++.+||.+..++.++
T Consensus 82 ~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 158 (263)
T 2olj_A 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD 158 (263)
T ss_dssp EETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred EECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh
Confidence 99999984 1 123556899999999999999999999964 322 23445556789999999999887765554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 236 DEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 236 ~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++|
T Consensus 159 -----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l 232 (263)
T 2olj_A 159 -----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFM 232 (263)
T ss_dssp -----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEE
Confidence 69999999999999999999999999999999999999999999999877999999999976 477899999999
Q ss_pred cCCEEEeeCChhhHH
Q 036088 316 SNGQAVCSEAPSNLS 330 (737)
Q Consensus 316 ~~G~iv~~G~~~~~~ 330 (737)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988764
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.1e-48 Score=412.47 Aligned_cols=221 Identities=24% Similarity=0.389 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+. .+.+|+||||+|++||+++|+||||||||||+|+|+|+++|. +|+
T Consensus 6 ~~l~i~~ls~~y~~-------------------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~--~G~ 64 (275)
T 3gfo_A 6 YILKVEELNYNYSD-------------------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS--SGR 64 (275)
T ss_dssp EEEEEEEEEEECTT-------------------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS--EEE
T ss_pred cEEEEEEEEEEECC-------------------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CeE
Confidence 37999999999952 235999999999999999999999999999999999998754 999
Q ss_pred EEECCEeCCc-----ccccceEEEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 161 VTLNGEVLGS-----KLLKIISAYVMQDD-LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 161 I~~~G~~~~~-----~~~~~~~~yV~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
|.++|+++.. ...++.+|||||++ ..+..+||+||+.|+.... ..+..+.+++++++++.+||.+..+..+
T Consensus 65 I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 141 (275)
T 3gfo_A 65 ILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT 141 (275)
T ss_dssp EEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred EEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc
Confidence 9999999842 13456799999986 3334689999999987543 3456677789999999999998776655
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCcEEEEEecCCcHHHHhhcceEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIA-KSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
+ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++.. +.++||+|+
T Consensus 142 ~-----~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~ 215 (275)
T 3gfo_A 142 H-----CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVF 215 (275)
T ss_dssp G-----GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEE
T ss_pred c-----cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEE
Confidence 4 699999999999999999999999999999999999999999999997 569999999999874 778999999
Q ss_pred EecCCEEEeeCChhhHHH
Q 036088 314 FLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++++.|+++++..
T Consensus 216 ~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 216 VMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp EEETTEEEEEECHHHHTH
T ss_pred EEECCEEEEECCHHHHhc
Confidence 999999999999988743
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2e-48 Score=408.29 Aligned_cols=218 Identities=26% Similarity=0.395 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|. .+++|+||||++++||+++|+||||||||||||+|+|+++|. +|+|
T Consensus 6 ~l~i~~l~~~y~--------------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~--~G~i 63 (262)
T 1b0u_A 6 KLHVIDLHKRYG--------------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGAI 63 (262)
T ss_dssp CEEEEEEEEEET--------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEE
T ss_pred eEEEeeEEEEEC--------------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEE
Confidence 699999999995 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc----------------ccccceEEEEecCCCCCCCCCHHHHHHHhh-hhcCCCCCcHHHHHHHHHHHHHHc
Q 036088 162 TLNGEVLGS----------------KLLKIISAYVMQDDLLYSMLTIEETLMFSA-EFRLPRSLSKEKKRKRVDALIDQL 224 (737)
Q Consensus 162 ~~~G~~~~~----------------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~l 224 (737)
.++|+++.. ...++.+|||+|++.+++.+||+||+.++. ... ..+..+.+++++++++.+
T Consensus 64 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~ 140 (262)
T 1b0u_A 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKV 140 (262)
T ss_dssp EETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHT
T ss_pred EECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHc
Confidence 999998851 123556899999999999999999999864 322 234455567899999999
Q ss_pred CCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcH
Q 036088 225 GLRSA-AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSH 303 (737)
Q Consensus 225 gL~~~-~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 303 (737)
||.+. .+..++ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.
T Consensus 141 ~L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~- 214 (262)
T 1b0u_A 141 GIDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG- 214 (262)
T ss_dssp TCCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-
T ss_pred CCCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-
Confidence 99887 765554 69999999999999999999999999999999999999999999999877999999999976
Q ss_pred HHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 304 RILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 304 ~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
.+.++||++++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 477899999999999999999988764
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.1e-48 Score=396.74 Aligned_cols=212 Identities=28% Similarity=0.407 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ .+++|+||||++++||+++|+||||||||||||+|+|+++|. +|+|
T Consensus 4 ~l~~~~l~~~y~--------------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~--~G~i 61 (224)
T 2pcj_A 4 ILRAENIKKVIR--------------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT--EGKV 61 (224)
T ss_dssp EEEEEEEEEEET--------------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS--EEEE
T ss_pred EEEEEeEEEEEC--------------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEE
Confidence 699999999995 256999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCccc------cc-ceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 162 TLNGEVLGSKL------LK-IISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 162 ~~~G~~~~~~~------~~-~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
.++|+++.... .+ +.++||+|++.+++.+||+||+.++.... ..+..+.+++++++++.+||.+..+..+
T Consensus 62 ~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 138 (224)
T 2pcj_A 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP 138 (224)
T ss_dssp EETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG
T ss_pred EECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh
Confidence 99999985421 22 56899999999999999999999976543 2344555678999999999988776655
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
+ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+ ++||++++
T Consensus 139 ~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~ 211 (224)
T 2pcj_A 139 Y-----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLE 211 (224)
T ss_dssp G-----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEE
Confidence 4 69999999999999999999999999999999999999999999999877999999999975 34 89999999
Q ss_pred ecCCEEEeeCC
Q 036088 315 LSNGQAVCSEA 325 (737)
Q Consensus 315 L~~G~iv~~G~ 325 (737)
|++|++++.|+
T Consensus 212 l~~G~i~~~g~ 222 (224)
T 2pcj_A 212 MKDGKVVGEIT 222 (224)
T ss_dssp EETTEEEEEEE
T ss_pred EECCEEEEEee
Confidence 99999999885
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-48 Score=403.08 Aligned_cols=220 Identities=28% Similarity=0.365 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+ .+.+|+||||++++||+++|+||||||||||||+|+|+++|. +|+
T Consensus 14 ~~l~i~~l~~~y~--------------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~--~G~ 71 (256)
T 1vpl_A 14 GAVVVKDLRKRIG--------------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGI 71 (256)
T ss_dssp CCEEEEEEEEEET--------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEE
T ss_pred CeEEEEEEEEEEC--------------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--ceE
Confidence 3799999999995 256999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 161 VTLNGEVLGS--KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 161 I~~~G~~~~~--~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
|.++|+++.. ...++.+|||+|++.+++.+||+||+.+..... .....+.+++++++++.+||.+..++.++
T Consensus 72 I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--- 145 (256)
T 1vpl_A 72 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS--- 145 (256)
T ss_dssp EEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG---
T ss_pred EEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChh---
Confidence 9999999853 234567899999999999999999999876443 23344456789999999999987776654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++|++|
T Consensus 146 --~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G 222 (256)
T 1vpl_A 146 --TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNG 222 (256)
T ss_dssp --GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETT
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999877999999999986 477789999999999
Q ss_pred EEEeeCChhhHHH
Q 036088 319 QAVCSEAPSNLSQ 331 (737)
Q Consensus 319 ~iv~~G~~~~~~~ 331 (737)
++++.|+++++.+
T Consensus 223 ~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 223 TIVETGTVEELKE 235 (256)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999888754
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=8.7e-48 Score=417.94 Aligned_cols=220 Identities=24% Similarity=0.377 Sum_probs=196.2
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+. ++++|+||||++++||+++|+||||||||||||+|+|+.+|+ +|+
T Consensus 13 ~~l~~~~l~~~y~g-------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~ 71 (355)
T 1z47_A 13 MTIEFVGVEKIYPG-------------------GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT--KGD 71 (355)
T ss_dssp EEEEEEEEEECCTT-------------------STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS--EEE
T ss_pred ceEEEEEEEEEEcC-------------------CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ccE
Confidence 47999999999931 246999999999999999999999999999999999998754 999
Q ss_pred EEECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 161 VTLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 161 I~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
|.++|+++... ..++.+|||+|+..+|+++||+||+.|+...+ ..++++.+++++++++.+||.+..++.+
T Consensus 72 I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~----- 143 (355)
T 1z47_A 72 VWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP----- 143 (355)
T ss_dssp EEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----
T ss_pred EEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----
Confidence 99999998642 34567999999999999999999999987653 2455666789999999999998776655
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
.+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.++ |.|+|++|||+. ++..+||+|++|++|
T Consensus 144 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G 222 (355)
T 1z47_A 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEG 222 (355)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETT
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999999765 999999999976 588999999999999
Q ss_pred EEEeeCChhhHH
Q 036088 319 QAVCSEAPSNLS 330 (737)
Q Consensus 319 ~iv~~G~~~~~~ 330 (737)
+++..|+++++.
T Consensus 223 ~i~~~g~~~~l~ 234 (355)
T 1z47_A 223 NVEQFGTPEEVY 234 (355)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEcCHHHHH
Confidence 999999998874
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.9e-48 Score=405.01 Aligned_cols=219 Identities=22% Similarity=0.353 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ ++++|+||||++++||+++|+||||||||||||+|+|+++|. +|+|
T Consensus 7 ~l~i~~l~~~y~--------------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~--~G~i 64 (257)
T 1g6h_A 7 ILRTENIVKYFG--------------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRV 64 (257)
T ss_dssp EEEEEEEEEEET--------------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEE
T ss_pred EEEEeeeEEEEC--------------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEE
Confidence 799999999995 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHhhhh-cCCC---------CCcHHHHHHHHHHHHHHcCCc
Q 036088 162 TLNGEVLGSK----LLKIISAYVMQDDLLYSMLTIEETLMFSAEF-RLPR---------SLSKEKKRKRVDALIDQLGLR 227 (737)
Q Consensus 162 ~~~G~~~~~~----~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~ 227 (737)
.++|+++... ..++.+|||+|++.+++.+||+||+.++... .... .....+.+++++++++.+||.
T Consensus 65 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 144 (257)
T 1g6h_A 65 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 144 (257)
T ss_dssp EETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG
T ss_pred EECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc
Confidence 9999998542 1345689999999999999999999987532 1000 012234567899999999998
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHh
Q 036088 228 SAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILS 307 (737)
Q Consensus 228 ~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 307 (737)
+..++.++ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. +.+
T Consensus 145 ~~~~~~~~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~ 218 (257)
T 1g6h_A 145 HLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLN 218 (257)
T ss_dssp GGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGG
T ss_pred hhhCCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHH
Confidence 87766654 699999999999999999999999999999999999999999999998779999999999874 778
Q ss_pred hcceEEEecCCEEEeeCChhh
Q 036088 308 LLDRLIFLSNGQAVCSEAPSN 328 (737)
Q Consensus 308 ~~D~v~lL~~G~iv~~G~~~~ 328 (737)
+||++++|++|++++.|++++
T Consensus 219 ~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 219 YIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp GCSEEEEEETTEEEEEEESHH
T ss_pred hCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999887
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-47 Score=418.08 Aligned_cols=218 Identities=23% Similarity=0.367 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|. ++.+|+|+||++++||+++|+||||||||||||+|+|+.+|+ +|+|
T Consensus 3 ~l~~~~l~~~y~--------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I 60 (359)
T 2yyz_A 3 SIRVVNLKKYFG--------------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT--SGEI 60 (359)
T ss_dssp CEEEEEEEEEET--------------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS--EEEE
T ss_pred EEEEEEEEEEEC--------------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC--ccEE
Confidence 589999999995 256999999999999999999999999999999999998754 9999
Q ss_pred EECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
.++|+++... ..++.+|||+|+..+|+++||+||+.|+.+.+ ..++.+.+++++++++.+||.+..++.+ .
T Consensus 61 ~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~ 132 (359)
T 2yyz_A 61 YFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----T 132 (359)
T ss_dssp EETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----G
T ss_pred EECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----h
Confidence 9999998642 23567999999999999999999999986432 2344555678999999999998776655 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.|||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||+. ++..+||++++|++|+
T Consensus 133 ~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~ 211 (359)
T 2yyz_A 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGK 211 (359)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999765 999999999976 5889999999999999
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
++..|+++++.
T Consensus 212 i~~~g~~~~l~ 222 (359)
T 2yyz_A 212 LVQYGTPDEVY 222 (359)
T ss_dssp EEEEECHHHHH
T ss_pred EEEeCCHHHHH
Confidence 99999998874
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-47 Score=417.85 Aligned_cols=218 Identities=26% Similarity=0.412 Sum_probs=195.1
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|. .+++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|
T Consensus 3 ~l~~~~l~~~y~--------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I 60 (362)
T 2it1_A 3 EIKLENIVKKFG--------------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT--SGKI 60 (362)
T ss_dssp CEEEEEEEEESS--------------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEE
T ss_pred EEEEEeEEEEEC--------------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC--ceEE
Confidence 589999999995 246999999999999999999999999999999999998754 9999
Q ss_pred EECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
.++|+++... ..++.+|||+|+..+|+++||+||+.|+...+ ..++.+.+++++++++.+||.+..+..+ .
T Consensus 61 ~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~ 132 (362)
T 2it1_A 61 YFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----W 132 (362)
T ss_dssp EETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----G
T ss_pred EECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----h
Confidence 9999998642 23567899999999999999999999987543 2455666788999999999998776655 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
+|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++ |.|+|++|||+. ++..+||+|++|++|+
T Consensus 133 ~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~ 211 (362)
T 2it1_A 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGE 211 (362)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999765 999999999976 5889999999999999
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
++..|+++++.
T Consensus 212 i~~~g~~~~~~ 222 (362)
T 2it1_A 212 ILQVGTPDEVY 222 (362)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEcCHHHHH
Confidence 99999998874
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.9e-47 Score=418.58 Aligned_cols=218 Identities=24% Similarity=0.403 Sum_probs=194.8
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ .+.+|+||||++++||+++|+||||||||||||+|+|+.+|+ +|+|
T Consensus 3 ~l~~~~l~~~y~--------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I 60 (372)
T 1g29_1 3 GVRLVDVWKVFG--------------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS--RGQI 60 (372)
T ss_dssp EEEEEEEEEEET--------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS--EEEE
T ss_pred EEEEEeEEEEEC--------------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC--ccEE
Confidence 589999999995 256999999999999999999999999999999999998754 9999
Q ss_pred EECCEeCCc-------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccc
Q 036088 162 TLNGEVLGS-------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTII 234 (737)
Q Consensus 162 ~~~G~~~~~-------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 234 (737)
.++|+++.. ...++.+|||+|+..+|+++||+||+.|+...+ ..++.+.+++++++++.+||.+..+..+
T Consensus 61 ~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~ 137 (372)
T 1g29_1 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP 137 (372)
T ss_dssp EETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG
T ss_pred EECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc
Confidence 999998743 123567899999999999999999999987653 2455666788999999999998776655
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
..|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++ |.|+|++|||+. ++..+||+++
T Consensus 138 -----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~ 211 (372)
T 1g29_1 138 -----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIA 211 (372)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEE
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEE
Confidence 469999999999999999999999999999999999999999999999765 999999999976 5889999999
Q ss_pred EecCCEEEeeCChhhHH
Q 036088 314 FLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~ 330 (737)
+|++|+++..|+++++.
T Consensus 212 vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 212 VMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEeCCEEEEeCCHHHHH
Confidence 99999999999998874
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1e-47 Score=418.18 Aligned_cols=218 Identities=30% Similarity=0.421 Sum_probs=194.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCcccccccccc--ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKL--LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
+|+++||+++|+ .++ +|+||||++++||+++|+||||||||||||+|+|+.+|+ +|
T Consensus 3 ~l~i~~l~~~y~--------------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G 60 (353)
T 1oxx_K 3 RIIVKNVSKVFK--------------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS--TG 60 (353)
T ss_dssp CEEEEEEEEEEG--------------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS--EE
T ss_pred EEEEEeEEEEEC--------------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ce
Confidence 589999999995 245 999999999999999999999999999999999998754 99
Q ss_pred EEEECCEeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc
Q 036088 160 TVTLNGEVLGS------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI 233 (737)
Q Consensus 160 ~I~~~G~~~~~------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 233 (737)
+|.++|+++.. ...++.+|||+|+..+|+++||+||+.|+...+ ..++++.+++++++++.+||.+..++.
T Consensus 61 ~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~ 137 (353)
T 1oxx_K 61 ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHF 137 (353)
T ss_dssp EEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSC
T ss_pred EEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCC
Confidence 99999998743 234567999999999999999999999986543 345566678899999999999887665
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceE
Q 036088 234 IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 234 vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 312 (737)
+ .+|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++ |+|+|++||++. ++.++||+|
T Consensus 138 ~-----~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri 211 (353)
T 1oxx_K 138 P-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRV 211 (353)
T ss_dssp G-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEE
T ss_pred h-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 5 469999999999999999999999999999999999999999999999764 999999999976 588999999
Q ss_pred EEecCCEEEeeCChhhHH
Q 036088 313 IFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~ 330 (737)
++|++|+++..|+++++.
T Consensus 212 ~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 212 GVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp EEEETTEEEEEECHHHHH
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998874
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=9.6e-48 Score=403.71 Aligned_cols=216 Identities=27% Similarity=0.401 Sum_probs=191.0
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||++.|. .+++|+||||++++||++||+||||||||||+|+|+|+++|. +|+
T Consensus 10 ~~l~~~~l~~~~~--------------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~ 67 (266)
T 4g1u_C 10 ALLEASHLHYHVQ--------------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS--HGE 67 (266)
T ss_dssp CEEEEEEEEEEET--------------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS--SCE
T ss_pred ceEEEEeEEEEeC--------------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcE
Confidence 3799999999995 356999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 036088 161 VTLNGEVLGSK---LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDE 237 (737)
Q Consensus 161 I~~~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 237 (737)
|.++|+++... ..++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+||.+..+..++
T Consensus 68 I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 140 (266)
T 4g1u_C 68 CHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-- 140 (266)
T ss_dssp EEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG--
T ss_pred EEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc--
Confidence 99999998642 34556899999998888899999999976432 122345678999999999887766554
Q ss_pred CCCCCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcc
Q 036088 238 QHRGVSGGERRRVSIGVDIIH------DPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 310 (737)
.|||||||||+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||
T Consensus 141 ---~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d 216 (266)
T 4g1u_C 141 ---VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYAD 216 (266)
T ss_dssp ---GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCS
T ss_pred ---cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCC
Confidence 699999999999999999 99999999999999999999999999999876 579999999986 5788999
Q ss_pred eEEEecCCEEEeeCChhhH
Q 036088 311 RLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~ 329 (737)
++++|++|++++.|+++++
T Consensus 217 ~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 217 RIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp EEEEEETTEEEEEECHHHH
T ss_pred EEEEEECCEEEEEcCHHHH
Confidence 9999999999999999876
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-47 Score=397.77 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ .+++|+||||++++||+++|+||||||||||||+|+|+++|. +|+|
T Consensus 6 ~l~~~~l~~~y~--------------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i 63 (240)
T 1ji0_A 6 VLEVQSLHVYYG--------------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ--KGKI 63 (240)
T ss_dssp EEEEEEEEEEET--------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEE
T ss_pred eEEEEeEEEEEC--------------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceE
Confidence 799999999995 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcC-CcccccccccC
Q 036088 162 TLNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLG-LRSAAMTIIGD 236 (737)
Q Consensus 162 ~~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~ 236 (737)
.++|+++.... .++.+|||+|++.+++.+||+||+.++.... ....+.+++++++++.++ |.+..++.
T Consensus 64 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~--- 136 (240)
T 1ji0_A 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL--- 136 (240)
T ss_dssp EETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB---
T ss_pred EECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC---
Confidence 99999985421 2345899999999999999999999864211 122334567889999994 87766554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 237 EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|+
T Consensus 137 --~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 137 --GGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLE 213 (240)
T ss_dssp --SSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEE
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 4579999999999999999999999999999999999999999999999878999999999975 4788999999999
Q ss_pred CCEEEeeCChhhHH
Q 036088 317 NGQAVCSEAPSNLS 330 (737)
Q Consensus 317 ~G~iv~~G~~~~~~ 330 (737)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999887763
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.1e-47 Score=417.68 Aligned_cols=218 Identities=22% Similarity=0.353 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|. .+.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|
T Consensus 11 ~l~~~~l~~~y~--------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I 68 (372)
T 1v43_A 11 EVKLENLTKRFG--------------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT--EGRI 68 (372)
T ss_dssp CEEEEEEEEEET--------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEE
T ss_pred eEEEEEEEEEEC--------------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--ceEE
Confidence 499999999995 256999999999999999999999999999999999998754 9999
Q ss_pred EECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
.++|+++... ..++.+|||+|+..+|+++||+||+.|+...+ ..++++.+++++++++.+||.+..++.+ .
T Consensus 69 ~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~ 140 (372)
T 1v43_A 69 YFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----A 140 (372)
T ss_dssp EETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----T
T ss_pred EECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999998642 23567899999999999999999999986432 2455666788999999999998776554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++ |.|+|++|||+. ++.++||+|++|++|+
T Consensus 141 ~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~ 219 (372)
T 1v43_A 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQ 219 (372)
T ss_dssp TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999765 999999999976 5889999999999999
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
++..|+++++.
T Consensus 220 i~~~g~~~~l~ 230 (372)
T 1v43_A 220 LLQIGSPTEVY 230 (372)
T ss_dssp EEEEECHHHHH
T ss_pred EEEeCCHHHHH
Confidence 99999998874
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.9e-47 Score=411.65 Aligned_cols=214 Identities=26% Similarity=0.393 Sum_probs=190.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ .+ +|+|+||++++||+++|+||||||||||||+|+|+.+|+ +|+|
T Consensus 1 ml~~~~l~~~y~--------------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I 57 (348)
T 3d31_A 1 MIEIESLSRKWK--------------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRI 57 (348)
T ss_dssp CEEEEEEEEECS--------------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS--EEEE
T ss_pred CEEEEEEEEEEC--------------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC--CcEE
Confidence 478999999995 25 999999999999999999999999999999999998754 9999
Q ss_pred EECCEeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGS-KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~-~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
.++|+++.. ...++.+|||+|+..+|+++||+||+.|+...+. .++. ++++++++.+||.+..++.+ .
T Consensus 58 ~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~-----~ 126 (348)
T 3d31_A 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNP-----L 126 (348)
T ss_dssp EETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCG-----G
T ss_pred EECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCCh-----h
Confidence 999999864 2345678999999999999999999999875432 1111 67999999999998876655 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.++ |+|+|++||++. ++.++||++++|++|+
T Consensus 127 ~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~ 205 (348)
T 3d31_A 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGK 205 (348)
T ss_dssp GSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSC
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999764 999999999975 5889999999999999
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
++..|+++++.
T Consensus 206 i~~~g~~~~~~ 216 (348)
T 3d31_A 206 LIQVGKPEEIF 216 (348)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999998873
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=9.6e-47 Score=390.29 Aligned_cols=213 Identities=21% Similarity=0.340 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+ . +|+||||++++ |+++|+||||||||||||+|+|+++|. +|+|
T Consensus 1 ml~~~~l~~~y~--------------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i 55 (240)
T 2onk_A 1 MFLKVRAEKRLG--------------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD--RGEV 55 (240)
T ss_dssp CCEEEEEEEEET--------------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS--EEEE
T ss_pred CEEEEEEEEEeC--------------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC--ceEE
Confidence 378999999994 1 49999999999 999999999999999999999998754 8999
Q ss_pred EECCEeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGS-KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~-~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
.++|+++.. ...++.+|||+|++.+++.+||+||+.++...+ .....+++++++++.+||.+..+..++
T Consensus 56 ~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 125 (240)
T 2onk_A 56 RLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA----- 125 (240)
T ss_dssp EETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----
T ss_pred EECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----
Confidence 999999853 234567899999999999999999999875321 112236789999999999887766554
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. ++.++||++++|++|+
T Consensus 126 ~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~ 204 (240)
T 2onk_A 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGR 204 (240)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999764 999999999976 4788999999999999
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
+++.|+++++.
T Consensus 205 i~~~g~~~~~~ 215 (240)
T 2onk_A 205 IVEKGKLKELF 215 (240)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999988764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-46 Score=395.87 Aligned_cols=223 Identities=26% Similarity=0.378 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+.+. ...+++|+||||++++||+++|+||||||||||||+|+|+++|. +|+|
T Consensus 2 ~l~~~~l~~~y~~~~---------------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~--~G~I 64 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT---------------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT--SGDV 64 (266)
T ss_dssp CEEEEEEEEEESTTS---------------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEE
T ss_pred EEEEEEEEEEecCCC---------------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEE
Confidence 589999999995110 00146999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcccccceEEEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc--ccccccccCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDD-LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR--SAAMTIIGDEQ 238 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~ 238 (737)
.++|+++.....++.+|||+|++ .+++.+||+||+.++.... .+..+.+++++++++.+||. +..++.+
T Consensus 65 ~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 136 (266)
T 2yz2_A 65 LYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP---- 136 (266)
T ss_dssp EETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG----
T ss_pred EECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh----
Confidence 99999986434456799999995 5666789999999975321 11122346789999999998 7776555
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. +.++||++++|++|
T Consensus 137 -~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 -FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKG 214 (266)
T ss_dssp -GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEEEEEETT
T ss_pred -hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999998779999999999874 67789999999999
Q ss_pred EEEeeCChhhHHH
Q 036088 319 QAVCSEAPSNLSQ 331 (737)
Q Consensus 319 ~iv~~G~~~~~~~ 331 (737)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999888754
No 22
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.2e-46 Score=402.14 Aligned_cols=216 Identities=24% Similarity=0.376 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+|+|+. .+.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+
T Consensus 52 ~~i~~~~vs~~y~~-------------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~--~G~ 110 (306)
T 3nh6_A 52 GRIEFENVHFSYAD-------------------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS--SGC 110 (306)
T ss_dssp CCEEEEEEEEESST-------------------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS--EEE
T ss_pred CeEEEEEEEEEcCC-------------------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC--CcE
Confidence 46999999999962 256999999999999999999999999999999999998754 999
Q ss_pred EEECCEeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-------cc
Q 036088 161 VTLNGEVLGSK---LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-------AA 230 (737)
Q Consensus 161 I~~~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~ 230 (737)
|.++|+++... .+++.+|||+|++.+|+. ||+|||.|+.... .. +++++.++.+++.+ ..
T Consensus 111 I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~~-----~~----~~~~~~~~~~~l~~~i~~lp~gl 180 (306)
T 3nh6_A 111 IRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVTA-----GN----DEVEAAAQAAGIHDAIMAFPEGY 180 (306)
T ss_dssp EEETTEETTSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTTC-----CH----HHHHHHHHHHTCHHHHHHSTTGG
T ss_pred EEECCEEcccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhcccC-----CH----HHHHHHHHHhCcHHHHHhccchh
Confidence 99999998653 356779999999999975 9999999875321 11 22444444444432 45
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
++.+| +.+..|||||||||+|||||+.+|+||||||||||||+.++..|++.|+++.+ ++|+|+++|+++. + ..||
T Consensus 181 ~t~~~-~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD 256 (306)
T 3nh6_A 181 RTQVG-ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNAD 256 (306)
T ss_dssp GCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCS
T ss_pred hhHhc-CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCC
Confidence 66776 45668999999999999999999999999999999999999999999999864 7999999999864 4 4599
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++|++++.|+++++.+
T Consensus 257 ~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 257 QILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999998864
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.4e-46 Score=389.85 Aligned_cols=219 Identities=22% Similarity=0.292 Sum_probs=180.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCcce
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGR--ISKQRLKG 159 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~--~~~~~~~G 159 (737)
+|+++||+++|+ .+.+|+||||++++||+++|+||||||||||+|+|+|+ ++ +.+|
T Consensus 3 ~l~~~~l~~~y~--------------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G 60 (250)
T 2d2e_A 3 QLEIRDLWASID--------------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERG 60 (250)
T ss_dssp EEEEEEEEEEET--------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEE
T ss_pred eEEEEeEEEEEC--------------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCce
Confidence 589999999995 25699999999999999999999999999999999998 44 4589
Q ss_pred EEEECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-cccccccc
Q 036088 160 TVTLNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-RSAAMTII 234 (737)
Q Consensus 160 ~I~~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v 234 (737)
+|.++|+++.... .+..++||+|++.+++.+||+||+.++............+..++++++++.+|| .+..++.+
T Consensus 61 ~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 61 EILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp EEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred EEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 9999999985421 133479999999999999999999986532111112234445788999999999 46666554
Q ss_pred cCCCCCC-CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhh-cceE
Q 036088 235 GDEQHRG-VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSL-LDRL 312 (737)
Q Consensus 235 g~~~~~~-LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v 312 (737)
.. |||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. +..+ ||++
T Consensus 141 -----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v 214 (250)
T 2d2e_A 141 -----NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKV 214 (250)
T ss_dssp -----TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEE
T ss_pred -----ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEE
Confidence 35 99999999999999999999999999999999999999999999997679999999999864 5566 5999
Q ss_pred EEecCCEEEeeCChhh
Q 036088 313 IFLSNGQAVCSEAPSN 328 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~ 328 (737)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999998873
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-46 Score=398.22 Aligned_cols=222 Identities=23% Similarity=0.362 Sum_probs=186.4
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
..+|+++||+++|+ .+++|+||||++++||+++|+||||||||||||+|+|+++|. +|
T Consensus 19 ~~~l~~~~l~~~y~--------------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--~G 76 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQ--------------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT--SG 76 (279)
T ss_dssp CEEEEEEEEEEEET--------------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--EE
T ss_pred CceEEEEeEEEEEC--------------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--Ce
Confidence 34799999999995 246999999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCC--c---ccccceEEEEecCCCC--CCCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 160 TVTLNGEVLG--S---KLLKIISAYVMQDDLL--YSMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 160 ~I~~~G~~~~--~---~~~~~~~~yV~Q~~~l--~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
+|.++|+++. . ...++.+|||+|++.+ .+.+||+||+.++...... ......+..++++++++.+||.+..+
T Consensus 77 ~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 156 (279)
T 2ihy_A 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ 156 (279)
T ss_dssp EEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT
T ss_pred EEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc
Confidence 9999999875 2 2345679999999754 3457999999986421100 01112344578899999999988776
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEE--EEEecCCcHHHHhhc
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIV--IMSIHQPSHRILSLL 309 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv--i~~~H~~~~~i~~~~ 309 (737)
+.++ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||++. ++.++|
T Consensus 157 ~~~~-----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~ 230 (279)
T 2ihy_A 157 QYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANF 230 (279)
T ss_dssp SBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTC
T ss_pred CChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhC
Confidence 6654 699999999999999999999999999999999999999999999998779999 99999986 467899
Q ss_pred ceEEEecCCEEEeeCChhhH
Q 036088 310 DRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~~~ 329 (737)
|++++|++|++++.|+++++
T Consensus 231 d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 231 SKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp CEEEEEETTEEEEEEEHHHH
T ss_pred CEEEEEECCEEEEECCHHHH
Confidence 99999999999999988765
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.2e-45 Score=388.21 Aligned_cols=226 Identities=25% Similarity=0.253 Sum_probs=187.5
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||||+|+|+....+.+|+
T Consensus 19 ~~l~~~~l~~~y~--------------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~ 78 (267)
T 2zu0_C 19 HMLSIKDLHVSVE--------------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT 78 (267)
T ss_dssp -CEEEEEEEEEET--------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEE
T ss_pred ceEEEEeEEEEEC--------------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE
Confidence 3799999999994 25699999999999999999999999999999999999522245899
Q ss_pred EEECCEeCCccc---c-cceEEEEecCCCCCCCCCHHHHHHHhhh-hc---CCCCCcHHHHHHHHHHHHHHcCCc-cccc
Q 036088 161 VTLNGEVLGSKL---L-KIISAYVMQDDLLYSMLTIEETLMFSAE-FR---LPRSLSKEKKRKRVDALIDQLGLR-SAAM 231 (737)
Q Consensus 161 I~~~G~~~~~~~---~-~~~~~yV~Q~~~l~~~lTV~e~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 231 (737)
|.++|+++.... . ++.++||+|++.+++.+||.||+.+... .+ .....+..+.+++++++++.+||. +..+
T Consensus 79 I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 158 (267)
T 2zu0_C 79 VEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLT 158 (267)
T ss_dssp EEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTT
T ss_pred EEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhc
Confidence 999999875321 1 2348999999999999999999987542 11 111233445567899999999996 4554
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhh-cc
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSL-LD 310 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D 310 (737)
+.++ ..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++.. +..+ ||
T Consensus 159 ~~~~----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d 233 (267)
T 2zu0_C 159 RSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPD 233 (267)
T ss_dssp SBTT----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCS
T ss_pred CCcc----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCC
Confidence 4432 1499999999999999999999999999999999999999999999997679999999999864 5555 89
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
++++|++|++++.|+++++..
T Consensus 234 ~v~~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 234 YVHVLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp EEEEEETTEEEEEECTTHHHH
T ss_pred EEEEEECCEEEEEcCHHHHhh
Confidence 999999999999999887653
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=6e-46 Score=391.17 Aligned_cols=224 Identities=22% Similarity=0.343 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+.+ +.+.+|+||||++++||+++|+||||||||||||+|+|+++|. +|+
T Consensus 15 ~~l~~~~l~~~y~~~-----------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~--~G~ 75 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNH-----------------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT--GGK 75 (271)
T ss_dssp CCEEEEEEEECCTTC-----------------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEE
T ss_pred ceEEEEEEEEEeCCC-----------------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CCE
Confidence 379999999999521 0256999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHc--CCcccccccc
Q 036088 161 VTLNGEVLGSK---LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQL--GLRSAAMTII 234 (737)
Q Consensus 161 I~~~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v 234 (737)
|.++|+++... ..++.++||+|++.+++ .||+|||.++...... ...........++++++.+ ||....+..
T Consensus 76 I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~- 153 (271)
T 2ixe_A 76 VLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET- 153 (271)
T ss_dssp EEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-
T ss_pred EEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-
Confidence 99999998532 24566899999999888 5999999986432100 0000111233467788888 666555443
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ +|+|||++||++.. + +.||+++
T Consensus 154 ----~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~ 227 (271)
T 2ixe_A 154 ----GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHIL 227 (271)
T ss_dssp ----GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEE
T ss_pred ----cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEE
Confidence 457999999999999999999999999999999999999999999999864 48999999999763 4 5699999
Q ss_pred EecCCEEEeeCChhhHHH
Q 036088 314 FLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++++.|+++++..
T Consensus 228 ~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 228 FLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEECCHHHHHh
Confidence 999999999999888753
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.8e-45 Score=382.55 Aligned_cols=216 Identities=28% Similarity=0.459 Sum_probs=182.4
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..++++||+++|+.+ .+.+|+||||++++||+++|+||||||||||||+|+|+++|. +|+
T Consensus 6 ~~~~~~~l~~~y~~~------------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~ 65 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD------------------SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE--NGQ 65 (247)
T ss_dssp EEEEEEEEEEESSTT------------------SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEE
T ss_pred CceeEEEEEEEeCCC------------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcE
Confidence 368999999999411 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccc-----
Q 036088 161 VTLNGEVLGSK---LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMT----- 232 (737)
Q Consensus 161 I~~~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----- 232 (737)
|.++|+++... ..++.+|||+|++.+++ .||+||+.++.. ... .++++++++.+++.+..+.
T Consensus 66 I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl 135 (247)
T 2ff7_A 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGY 135 (247)
T ss_dssp EEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGG
T ss_pred EEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchh
Confidence 99999998642 34567899999999887 599999988631 112 2356777888888765443
Q ss_pred --cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 233 --IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 233 --~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
.++ +.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++.. + +.||
T Consensus 136 ~~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d 211 (247)
T 2ff7_A 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNAD 211 (247)
T ss_dssp GCBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSS
T ss_pred hhhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCC
Confidence 232 3466899999999999999999999999999999999999999999999995 59999999999874 4 5699
Q ss_pred eEEEecCCEEEeeCChhhHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~ 330 (737)
++++|++|++++.|+++++.
T Consensus 212 ~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 212 RIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEEETTEEEEEECHHHHH
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999988764
No 28
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=8.9e-45 Score=378.55 Aligned_cols=210 Identities=23% Similarity=0.341 Sum_probs=181.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+. ++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|
T Consensus 4 ~l~i~~l~~~y~~-------------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I 62 (253)
T 2nq2_C 4 ALSVENLGFYYQA-------------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI--QGKI 62 (253)
T ss_dssp EEEEEEEEEEETT-------------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS--EEEE
T ss_pred eEEEeeEEEEeCC-------------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEE
Confidence 6999999999951 145999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
. .++.+|||+|++.+++.+||+||+.++...... ........+++++++++.+||.+..+..++
T Consensus 63 ~----------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 127 (253)
T 2nq2_C 63 E----------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT----- 127 (253)
T ss_dssp E----------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred E----------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----
Confidence 8 245689999999999899999999987532210 001123445778999999999887766554
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||++++|++|+
T Consensus 128 ~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN 206 (253)
T ss_dssp GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe
Confidence 69999999999999999999999999999999999999999999999876 999999999976 4778999999999999
Q ss_pred EEeeCChhhH
Q 036088 320 AVCSEAPSNL 329 (737)
Q Consensus 320 iv~~G~~~~~ 329 (737)
++.|+++++
T Consensus 207 -~~~g~~~~~ 215 (253)
T 2nq2_C 207 -FKFGETRNI 215 (253)
T ss_dssp -EEEEEHHHH
T ss_pred -EecCCHHHH
Confidence 999988765
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.9e-45 Score=379.45 Aligned_cols=207 Identities=24% Similarity=0.373 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++ ++|+|+||++++||+++|+||||||||||||+|+|+++ +. |+|
T Consensus 4 ~l~~~~l~~~------------------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i 56 (249)
T 2qi9_C 4 VMQLQDVAES------------------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSI 56 (249)
T ss_dssp EEEEEEEEET------------------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEE
T ss_pred EEEEEceEEE------------------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEE
Confidence 6899999874 28999999999999999999999999999999999986 45 999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQ 238 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 238 (737)
.++|+++.. ...++.++||+|++.+++.+||+||+.++... ... +++++++++.+||.+..++.+
T Consensus 57 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~---- 124 (249)
T 2qi9_C 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD----KTR----TELLNDVAGALALDDKLGRST---- 124 (249)
T ss_dssp EETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS----TTC----HHHHHHHHHHTTCGGGTTSBG----
T ss_pred EECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc----CCc----HHHHHHHHHHcCChhHhcCCh----
Confidence 999998753 23456689999999999999999999986311 111 467899999999988776554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPI-------LLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~-------illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
..|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||+
T Consensus 125 -~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~ 202 (249)
T 2qi9_C 125 -NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHR 202 (249)
T ss_dssp -GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred -hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 4699999999999999999999 99999999999999999999999999877999999999976 47789999
Q ss_pred EEEecCCEEEeeCChhhH
Q 036088 312 LIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~ 329 (737)
+++|++|++++.|+++++
T Consensus 203 v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 203 AWLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEEETTEEEEEEEHHHH
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999988765
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-45 Score=381.59 Aligned_cols=216 Identities=27% Similarity=0.403 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+. .+++|+||||++++||+++|+|||||||||||++|+|+++|. +|+|
T Consensus 1 ml~~~~l~~~y~~-------------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i 59 (243)
T 1mv5_A 1 MLSARHVDFAYDD-------------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT--AGEI 59 (243)
T ss_dssp CEEEEEEEECSSS-------------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS--BSCE
T ss_pred CEEEEEEEEEeCC-------------------CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEE
Confidence 4789999999841 246999999999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccccc-----
Q 036088 162 TLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTI----- 233 (737)
Q Consensus 162 ~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----- 233 (737)
.++|+++.. ...++.++||+|++.+++. ||+||+.++... ... +++++++++.+++.+..+..
T Consensus 60 ~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~ 130 (243)
T 1mv5_A 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYT----DEDLWQVLDLAFARSFVENMPDQLN 130 (243)
T ss_dssp EETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSC----HHHHHHHHHHHTCTTTTTSSTTGGG
T ss_pred EECCEEhhhCCHHHHHhhEEEEcCCCccccc-cHHHHHhhhccC----CCC----HHHHHHHHHHhChHHHHHhCccchh
Confidence 999999853 2356678999999998885 999999875321 112 24577889999987765433
Q ss_pred --ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 234 --IGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 234 --vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
++ +.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++.. + +.||+
T Consensus 131 ~~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~ 206 (243)
T 1mv5_A 131 TEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST-I-VDADK 206 (243)
T ss_dssp CEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHH-H-HHCSE
T ss_pred chhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-H-HhCCE
Confidence 22 3466899999999999999999999999999999999999999999999997 69999999999763 4 56999
Q ss_pred EEEecCCEEEeeCChhhHHH
Q 036088 312 LIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~~ 331 (737)
+++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999887743
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.3e-44 Score=374.23 Aligned_cols=217 Identities=24% Similarity=0.400 Sum_probs=180.9
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
.+|+++||+++|+.. ..+.+|+||||++++||+++|+||||||||||||+|+|+++ + +|+
T Consensus 16 ~~l~i~~l~~~y~~~-----------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~ 75 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ-----------------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGD 75 (260)
T ss_dssp CCEEEEEEEECCTTC-----------------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEE
T ss_pred CeEEEEEEEEEeCCC-----------------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeE
Confidence 369999999999531 02469999999999999999999999999999999999985 3 799
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-------cc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-------AA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~ 230 (737)
|.++|+++.. ...++.++||+|++.+++ .||+||+.++.. ... ++++.+.++.+++.+ ..
T Consensus 76 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~ 145 (260)
T 2ghi_A 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKW 145 (260)
T ss_dssp EEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGG
T ss_pred EEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccc
Confidence 9999999853 234567999999999887 599999988531 111 234566677766644 34
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
++.++ +.+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ |+|||++||++.. + +.||
T Consensus 146 ~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d 221 (260)
T 2ghi_A 146 DTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAE 221 (260)
T ss_dssp GCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCS
T ss_pred ccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCC
Confidence 44454 45678999999999999999999999999999999999999999999999965 8999999999874 4 5699
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
++++|++|+++..|+++++..
T Consensus 222 ~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 222 SIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999888743
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8.6e-45 Score=369.14 Aligned_cols=202 Identities=20% Similarity=0.300 Sum_probs=174.1
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+++|+ . ++|+|+||++++||+++|+||||||||||||+|+|+++|. +|+
T Consensus 9 ~~l~~~~ls~~y~--------------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~--~G~ 65 (214)
T 1sgw_A 9 SKLEIRDLSVGYD--------------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL--KGE 65 (214)
T ss_dssp CEEEEEEEEEESS--------------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS--EEE
T ss_pred ceEEEEEEEEEeC--------------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeE
Confidence 4799999999985 3 5999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
|.++|+++. ..++.++||+|++.+++.+||+||+.++..... .. .+ +++++++++.+||.+. +..+ .
T Consensus 66 I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~~~-----~ 132 (214)
T 1sgw_A 66 IIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KKKL-----G 132 (214)
T ss_dssp EEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TSBG-----G
T ss_pred EEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CCCh-----h
Confidence 999999886 356779999999999999999999998765421 11 11 4578899999999865 5544 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. +..++|+++++ +|+|
T Consensus 133 ~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY-STKI 210 (214)
T ss_dssp GSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG-BC--
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe-CCcc
Confidence 699999999999999999999999999999999999999999999998778999999999874 77788888765 4443
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5e-44 Score=374.62 Aligned_cols=211 Identities=21% Similarity=0.293 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+... ..+.+|+|+||+++ ||+++|+||||||||||||+|+|++ |. +|+|
T Consensus 1 ml~~~~l~~~y~~~~----------------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I 60 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG----------------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNI 60 (263)
T ss_dssp CEEEEEEEEEEEEET----------------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEE
T ss_pred CEEEEEEEEEeCCCC----------------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEE
Confidence 478999999996310 01569999999999 9999999999999999999999998 65 8999
Q ss_pred EECCEeCCcccccceEE-EEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 036088 162 TLNGEVLGSKLLKIISA-YVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAMTIIGDEQH 239 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~-yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 239 (737)
.++|+++.....++.++ ||+|++.+ .+||+||+.+..... .. .+++++++++.+||. +..++.++
T Consensus 61 ~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~---- 127 (263)
T 2pjz_A 61 FINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLY---- 127 (263)
T ss_dssp EETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGG----
T ss_pred EECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChh----
Confidence 99999875321255689 99999887 789999999876432 11 235688999999998 77766554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc-eEEEecCC
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD-RLIFLSNG 318 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D-~v~lL~~G 318 (737)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ |||++||++.. +.++|| ++++|++|
T Consensus 128 -~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~-~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 -KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDM-LNLYKEYKAYFLVGN 202 (263)
T ss_dssp -GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGG-GGGCTTSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHH-HHHhcCceEEEEECC
Confidence 6999999999999999999999999999999999999999999998853 99999999864 678999 99999999
Q ss_pred EEEeeCChhhHH
Q 036088 319 QAVCSEAPSNLS 330 (737)
Q Consensus 319 ~iv~~G~~~~~~ 330 (737)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999988875
No 34
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.1e-44 Score=414.51 Aligned_cols=219 Identities=24% Similarity=0.359 Sum_probs=183.2
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+|+|+.+ .+++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+
T Consensus 340 ~~i~~~~v~~~y~~~------------------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~--~G~ 399 (587)
T 3qf4_A 340 GSVSFENVEFRYFEN------------------TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE--RGR 399 (587)
T ss_dssp CCEEEEEEEECSSSS------------------SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS--EEE
T ss_pred CcEEEEEEEEEcCCC------------------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC--CcE
Confidence 479999999999632 356999999999999999999999999999999999998754 999
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHH-----HHHHHHHHHcCCcccccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKR-----KRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~ 232 (737)
|.+||+++.. ...|+.++||+|++.+|+. ||+||+.++... .++++.. ..+++.++. +.+..|+
T Consensus 400 i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~--l~~g~~~ 471 (587)
T 3qf4_A 400 VEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRED-----ATDDEIVEAAKIAQIHDFIIS--LPEGYDS 471 (587)
T ss_dssp EEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSS-----CCHHHHHHHHHHTTCHHHHHT--SSSGGGC
T ss_pred EEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCC-----CCHHHHHHHHHHhCcHHHHHh--cccchhh
Confidence 9999999864 2456779999999999986 999999886421 1222111 112233332 3445677
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.+| +.+..||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. .+.||+|
T Consensus 472 ~~~-~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i 547 (587)
T 3qf4_A 472 RVE-RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKI 547 (587)
T ss_dssp EEC-SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEE
T ss_pred Hhc-CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEE
Confidence 776 4567899999999999999999999999999999999999999999999985 48999999999864 5689999
Q ss_pred EEecCCEEEeeCChhhHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~ 331 (737)
++|++|++++.|+++++.+
T Consensus 548 ~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 548 LVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999864
No 35
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=9.4e-44 Score=412.46 Aligned_cols=218 Identities=23% Similarity=0.368 Sum_probs=184.6
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
+..|+++||+++|+.+ .+++|+|+|+++++||++||+||||||||||+++|+|+++|. +|
T Consensus 337 ~~~i~~~~v~~~y~~~------------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~--~G 396 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDN------------------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT--SG 396 (578)
T ss_dssp SCCEEEEEEEECSCSS------------------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS--EE
T ss_pred CCeEEEEEEEEEcCCC------------------CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC--Cc
Confidence 3479999999999632 356999999999999999999999999999999999998754 99
Q ss_pred EEEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-------ccc
Q 036088 160 TVTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-------RSA 229 (737)
Q Consensus 160 ~I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~ 229 (737)
+|.+||+++.. ...|+.+|||+|++.+|+. ||+||+.++... ..+ +++.+.++..++ .+.
T Consensus 397 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~lp~g 466 (578)
T 4a82_A 397 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPT-----ATD----EEVVEAAKMANAHDFIMNLPQG 466 (578)
T ss_dssp EEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSS-----CCH----HHHHHHHHHTTCHHHHHTSTTG
T ss_pred EEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCC-----CCH----HHHHHHHHHhCcHHHHHhCcch
Confidence 99999999864 2456779999999999987 999999886421 122 234444444443 345
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhc
Q 036088 230 AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLL 309 (737)
Q Consensus 230 ~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 309 (737)
.|+.+| +.+..||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++. +++|+|+++|+++. .+.|
T Consensus 467 ~~t~~~-~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~ 542 (578)
T 4a82_A 467 YDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHA 542 (578)
T ss_dssp GGCBCC-GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTC
T ss_pred hhhhhc-cCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcC
Confidence 677776 4566799999999999999999999999999999999999999999999986 47999999999875 4679
Q ss_pred ceEEEecCCEEEeeCChhhHHH
Q 036088 310 DRLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 310 D~v~lL~~G~iv~~G~~~~~~~ 331 (737)
|+|++|++|++++.|+++++.+
T Consensus 543 d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 543 DKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp SEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999998864
No 36
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.4e-43 Score=361.46 Aligned_cols=204 Identities=23% Similarity=0.383 Sum_probs=168.2
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+.+ .+++|+||||++++||+++|+||||||||||||+|+|+++|. +|+|
T Consensus 6 ~l~~~~l~~~y~~~------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i 65 (229)
T 2pze_A 6 EVVMENVTAFWEEG------------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKI 65 (229)
T ss_dssp EEEEEEEEECSSTT------------------SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEE
T ss_pred eEEEEEEEEEeCCC------------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC--ccEE
Confidence 69999999999521 356999999999999999999999999999999999998754 9999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccc-------cccc
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAA-------MTII 234 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v 234 (737)
.++| .++||+|++.+++. ||+||+.++... .. .+.++.++.+++.+.. ++.+
T Consensus 66 ~~~g----------~i~~v~q~~~~~~~-tv~enl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~ 124 (229)
T 2pze_A 66 KHSG----------RISFCSQFSWIMPG-TIKENIIFGVSY------DE----YRYRSVIKACQLEEDISKFAEKDNIVL 124 (229)
T ss_dssp EECS----------CEEEECSSCCCCSB-CHHHHHHTTSCC------CH----HHHHHHHHHTTCHHHHTTSTTGGGSCB
T ss_pred EECC----------EEEEEecCCcccCC-CHHHHhhccCCc------Ch----HHHHHHHHHhCcHHHHHhCcccccccc
Confidence 9998 37999999999886 999999986321 11 1233444445544322 2333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKV-LKQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
+ +.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||++.. + +.||+++
T Consensus 125 ~-~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~-~-~~~d~v~ 200 (229)
T 2pze_A 125 G-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKIL 200 (229)
T ss_dssp C-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHCSEEE
T ss_pred c-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH-H-HhCCEEE
Confidence 3 34568999999999999999999999999999999999999999997 45664 48999999999753 4 5699999
Q ss_pred EecCCEEEeeCChhhHH
Q 036088 314 FLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~ 330 (737)
+|++|++++.|+++++.
T Consensus 201 ~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 201 ILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999988764
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.7e-44 Score=391.05 Aligned_cols=216 Identities=21% Similarity=0.298 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+++|+.+ .+.+|+||||+|++||+++|+||||||||||||+|+|+++ .+|+
T Consensus 18 ~~i~~~~l~~~y~~~------------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~ 76 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEG------------------GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGE 76 (390)
T ss_dssp CCEEEEEEEEESSSS------------------SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEE
T ss_pred CeEEEEEEEEEecCC------------------CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeE
Confidence 469999999999532 3569999999999999999999999999999999999975 3899
Q ss_pred EEECCEeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccC-
Q 036088 161 VTLNGEVLGSK---LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD- 236 (737)
Q Consensus 161 I~~~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~- 236 (737)
|.++|+++... ..++.+|||||++.+|+ +||+||+.+.. .. .+++++++++.++|.+..+.....
T Consensus 77 I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l 145 (390)
T 3gd7_A 77 IQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKL 145 (390)
T ss_dssp EEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGG
T ss_pred EEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhccccc
Confidence 99999998643 34567999999999998 59999996432 11 135678899999998766554331
Q ss_pred -----CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 237 -----EQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 237 -----~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
+....|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .++|+|++||+.. ....|||
T Consensus 146 ~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDr 222 (390)
T 3gd7_A 146 DFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQ 222 (390)
T ss_dssp GCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSE
T ss_pred ccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCE
Confidence 2233499999999999999999999999999999999999999999999875 4899999999975 4577999
Q ss_pred EEEecCCEEEeeCChhhHHH
Q 036088 312 LIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 312 v~lL~~G~iv~~G~~~~~~~ 331 (737)
|++|++|+++..|+++++..
T Consensus 223 i~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 223 FLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEEETTEEEEESSHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998753
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.2e-42 Score=404.53 Aligned_cols=220 Identities=23% Similarity=0.403 Sum_probs=185.4
Q ss_pred e-EEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 82 L-LSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 82 ~-l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
. |+++||+++|+.+ .++++|+|+|+++++||++||+||||||||||+|+|+|+++|. +|+
T Consensus 340 ~~i~~~~v~~~y~~~-----------------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~--~G~ 400 (595)
T 2yl4_A 340 GALEFKNVHFAYPAR-----------------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA--SGT 400 (595)
T ss_dssp CCEEEEEEEEECSSC-----------------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS--EEE
T ss_pred CeEEEEEEEEEeCCC-----------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CcE
Confidence 5 9999999999632 0246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-------ccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-------SAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~ 230 (737)
|.+||+++.. ...++.++||+|++.+|+. ||+||+.++.... ...+ +++++++++.+++. +..
T Consensus 401 i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~ 473 (595)
T 2yl4_A 401 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGF 473 (595)
T ss_dssp EEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGG
T ss_pred EEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccc
Confidence 9999999864 2356679999999999985 9999999864321 0112 34577778877764 346
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
|+.+|+ .+..||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. .+.||
T Consensus 474 ~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d 549 (595)
T 2yl4_A 474 NTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST--IKNAN 549 (595)
T ss_dssp GCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH--HHHSS
T ss_pred cccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH--HHcCC
Confidence 777764 5678999999999999999999999999999999999999999999999976 8999999999863 46799
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++|++++.|+++++.+
T Consensus 550 ~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 550 MVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp EEEEEETTEEEEEECSCC---
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999988743
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=7e-43 Score=360.91 Aligned_cols=211 Identities=22% Similarity=0.379 Sum_probs=166.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
+|+++||+++|+.. .+.+|+|+||+|++||+++|+||||||||||||+|+|+++| .+|+|
T Consensus 3 ~l~~~~l~~~y~~~------------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I 62 (237)
T 2cbz_A 3 SITVRNATFTWARS------------------DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHV 62 (237)
T ss_dssp CEEEEEEEEESCTT------------------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE--EEEEE
T ss_pred eEEEEEEEEEeCCC------------------CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceE
Confidence 58999999999521 25699999999999999999999999999999999999875 48999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-AAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 240 (737)
.++| .++||+|++.+ +.+||+||+.++.... . ...+......++.+.+++.+ ..++.++ ..+.
T Consensus 63 ~~~g----------~i~~v~Q~~~~-~~~tv~enl~~~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 126 (237)
T 2cbz_A 63 AIKG----------SVAYVPQQAWI-QNDSLRENILFGCQLE---E-PYYRSVIQACALLPDLEILPSGDRTEIG-EKGV 126 (237)
T ss_dssp EECS----------CEEEECSSCCC-CSEEHHHHHHTTSCCC---T-THHHHHHHHTTCHHHHTTSTTGGGSEES-TTSB
T ss_pred EECC----------EEEEEcCCCcC-CCcCHHHHhhCccccC---H-HHHHHHHHHHhhHHHHHhcccccccccc-CCCC
Confidence 9999 27999999875 4689999999864211 0 11111111111222333321 1223333 4567
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLK---QIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~---~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+ +++ +|+|||++||++.. + +.||++++|++
T Consensus 127 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG 203 (237)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC
Confidence 899999999999999999999999999999999999999999995 444 48999999999874 3 67999999999
Q ss_pred CEEEeeCChhhHHH
Q 036088 318 GQAVCSEAPSNLSQ 331 (737)
Q Consensus 318 G~iv~~G~~~~~~~ 331 (737)
|++++.|+++++..
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999887743
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.5e-42 Score=402.69 Aligned_cols=218 Identities=25% Similarity=0.352 Sum_probs=186.5
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+++|+.+ ++++|+|+|+++++||++||+||||||||||+|+|+|+++|. +|+
T Consensus 340 ~~i~~~~v~~~y~~~------------------~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~--~G~ 399 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR------------------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID--EGH 399 (582)
T ss_dssp CCEEEEEEEECSSSS------------------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS--EEE
T ss_pred CcEEEEEEEEEcCCC------------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC--CCe
Confidence 369999999999621 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-------cc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-------AA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~ 230 (737)
|.+||+++.. ...++.++||+|++.+|+. ||+||+.++.. + ..+ +++++++++.+++.+ ..
T Consensus 400 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~ 470 (582)
T 3b60_A 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGL 470 (582)
T ss_dssp EEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGG
T ss_pred EEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccc
Confidence 9999999864 2356679999999999986 99999998641 1 122 244667777777654 45
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
|+.+| +.+..||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++.+ |+|+|+++|+++. .+.||
T Consensus 471 ~~~~~-~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d 546 (582)
T 3b60_A 471 DTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQAD 546 (582)
T ss_dssp GSBCC-TTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCS
T ss_pred ccccc-CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCC
Confidence 67776 45678999999999999999999999999999999999999999999999975 9999999999874 46899
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++|++++.|+++++.+
T Consensus 547 ~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 547 EIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEECCEEEEecCHHHHHH
Confidence 999999999999999998754
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.6e-43 Score=409.01 Aligned_cols=216 Identities=23% Similarity=0.351 Sum_probs=181.6
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+++|+. ++++|+|+|+++++||++||+||||||||||+|+|+|+++|. +|+
T Consensus 353 ~~i~~~~v~~~y~~-------------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~--~G~ 411 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK-------------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD--RGQ 411 (598)
T ss_dssp CCEEEEEEECCSSS-------------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS--EEE
T ss_pred CeEEEEEEEEECCC-------------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC--CeE
Confidence 36999999999962 246999999999999999999999999999999999998754 999
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-------cccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-------RSAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~ 230 (737)
|.+||+++.. ...|+.++||+|++.+|+. ||+||+.++.... ++ +++++.++..++ .+..
T Consensus 412 i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~g~ 481 (598)
T 3qf4_B 412 ILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPGA-----TD----EEIKEAAKLTHSDHFIKHLPEGY 481 (598)
T ss_dssp EEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTTC-----CT----THHHHHTTTTTCHHHHHTSTTGG
T ss_pred EEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCCC-----CH----HHHHHHHHHhCCHHHHHhccccc
Confidence 9999999864 3456789999999999975 9999999863211 11 123333333333 3345
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
++.+| +.+..||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.||
T Consensus 482 ~t~~~-~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d 557 (598)
T 3qf4_B 482 ETVLT-DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNAD 557 (598)
T ss_dssp GCBCH-HHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCS
T ss_pred cchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCC
Confidence 66666 3456799999999999999999999999999999999999999999999986 58999999999974 4 5699
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++|++++.|+++++.+
T Consensus 558 ~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 558 LIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EEEEECSSSEEECSCHHHHHH
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999998864
No 42
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1e-42 Score=404.14 Aligned_cols=218 Identities=24% Similarity=0.381 Sum_probs=186.0
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+++|+.+ ++++|+|+|+++++||++||+||||||||||+|+|+|+++|. +|+
T Consensus 340 ~~i~~~~v~~~y~~~------------------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~--~G~ 399 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK------------------EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD--SGS 399 (582)
T ss_pred CeEEEEEEEEEcCCC------------------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CCE
Confidence 479999999999631 246999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-------cc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-------AA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~ 230 (737)
|.+||+++.. ...++.+|||+|++.+|+. ||+||+.++.. + ..+ +++++++++.+++.+ ..
T Consensus 400 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~ 470 (582)
T 3b5x_A 400 ICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGL 470 (582)
T ss_pred EEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccc
Confidence 9999999853 3456789999999999986 99999998641 1 112 245667777777654 34
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
|+.+| +.+..||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++.+ |+|+|+++|+++. .+.||
T Consensus 471 ~t~~~-~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d 546 (582)
T 3b5x_A 471 DTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST--IEQAD 546 (582)
T ss_pred cchhc-CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCC
Confidence 56676 35678999999999999999999999999999999999999999999999865 9999999999863 46799
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|++|++|++++.|+++++.+
T Consensus 547 ~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 547 EILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999988753
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7e-43 Score=437.77 Aligned_cols=220 Identities=22% Similarity=0.369 Sum_probs=189.9
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+|+||+|+|+.+. +.++|+||||+|+|||.+||+||||||||||+++|.|+++|. +|+
T Consensus 1075 g~I~f~nVsf~Y~~~~-----------------~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~--~G~ 1135 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERP-----------------EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL--GGE 1135 (1321)
T ss_dssp CCEEEEEEEECCTTSC-----------------SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS--SSE
T ss_pred CeEEEEEEEEeCCCCC-----------------CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC--CCE
Confidence 3699999999997431 356999999999999999999999999999999999998754 899
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCC-------cccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL-------RSAA 230 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~ 230 (737)
|.+||.|++. ..+|+.++|||||+.+|+. ||+|||.|+.. +.+.+++ .+.+.++..++ ++..
T Consensus 1136 I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~----ei~~Al~~a~l~~~I~~Lp~Gl 1207 (1321)
T 4f4c_A 1136 IFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMA----QVEEAARLANIHNFIAELPEGF 1207 (1321)
T ss_dssp EEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHH----HHHHHHHHTTCHHHHHTSTTTT
T ss_pred EEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCCCCHH----HHHHHHHHhCChHHHHcCcCCC
Confidence 9999999975 4578899999999999997 99999988742 1223333 34444444443 5568
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 231 MTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 231 ~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
||.||+ .+..||||||||++|||||+++|+||+||||||+||++++..|.+.|+++. +|+|+|+++|+++. ...||
T Consensus 1208 dT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD 1283 (1321)
T 4f4c_A 1208 ETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNAD 1283 (1321)
T ss_dssp CSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCS
T ss_pred CCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCC
Confidence 899984 566799999999999999999999999999999999999999999999875 48999999999975 68899
Q ss_pred eEEEecCCEEEeeCChhhHHH
Q 036088 311 RLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 311 ~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+|+||++|+|++.|+++++.+
T Consensus 1284 ~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1284 CIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEEEESSSSEEEEECHHHHHH
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999975
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.2e-42 Score=431.73 Aligned_cols=220 Identities=26% Similarity=0.399 Sum_probs=188.3
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+|+||+|+|+... ++++|+|+|++|++|+++||+||||||||||+++|.|+++|. +|+
T Consensus 414 g~I~~~nvsF~Y~~~~-----------------~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~--~G~ 474 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRP-----------------DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL--KGK 474 (1321)
T ss_dssp CCEEEEEEEECCSSST-----------------TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS--EEE
T ss_pred CcEEEEEeeeeCCCCC-----------------CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc--cCc
Confidence 3699999999997431 467999999999999999999999999999999999998754 999
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHH-----HHHHHHHHHcCCcccccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKR-----KRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~ 232 (737)
|.+||+++.. ..+|+.+|||+|++.+|.. ||+|||.|+... .++++.. ..+++.++.| ++..||
T Consensus 475 I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~~-----~~~~~v~~a~~~a~l~~~i~~l--p~G~~T 546 (1321)
T 4f4c_A 475 ITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKEG-----ITREEMVAACKMANAEKFIKTL--PNGYNT 546 (1321)
T ss_dssp EEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCTT-----CCHHHHHHHHHHTTCHHHHHHS--TTTTSS
T ss_pred ccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhccc-----chHHHHHHHHHHccchhHHHcC--CCCCcc
Confidence 9999999875 3567889999999999997 999999997532 2222211 1223344443 566889
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.||+ .+..||||||||++||||++++|+||+||||||+||++++..+.+.|+++.+ |+|+|+++|+++. .+.||+|
T Consensus 547 ~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~I 622 (1321)
T 4f4c_A 547 LVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLI 622 (1321)
T ss_dssp EESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEE
T ss_pred EecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEE
Confidence 9985 4557999999999999999999999999999999999999999999999864 8999999999874 7899999
Q ss_pred EEecCCEEEeeCChhhHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~ 331 (737)
++|++|+|++.|+++++.+
T Consensus 623 ivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 623 ISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EEEETTEEEEEECHHHHHT
T ss_pred EEeeCCeeeccCCHHHHHH
Confidence 9999999999999999864
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3e-40 Score=412.99 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=185.1
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+|+|+.+. .+++|+||||++++||++||+||||||||||+++|+|+++|. +|+
T Consensus 386 g~i~~~~v~~~y~~~~-----------------~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~--~G~ 446 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRK-----------------EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL--DGM 446 (1284)
T ss_dssp CCEEEEEEEECCSSTT-----------------SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS--EEE
T ss_pred CeEEEEEEEEEcCCCC-----------------CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeE
Confidence 4699999999997421 356999999999999999999999999999999999998754 999
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHH-----HHHHHHHHHcCCcccccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKR-----KRVDALIDQLGLRSAAMT 232 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~ 232 (737)
|.+||+++.. ...|+.+|||+|++.+|+. ||+|||.++... .+.++.. ..+++.++.+ .+..||
T Consensus 447 i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l--~~g~~t 518 (1284)
T 3g5u_A 447 VSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRED-----VTMDEIEKAVKEANAYDFIMKL--PHQFDT 518 (1284)
T ss_dssp EEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSS-----CCHHHHHHHHHHTTCHHHHHHS--TTGGGC
T ss_pred EEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCC-----CCHHHHHHHHHHhCcHHHHHhc--cccccc
Confidence 9999999864 3456779999999999987 999999997531 2222211 2234445544 445788
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.+| +.+..||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. ...||+|
T Consensus 519 ~~~-~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--i~~~d~i 594 (1284)
T 3g5u_A 519 LVG-ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST--VRNADVI 594 (1284)
T ss_dssp CCS-SSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH--HTTCSEE
T ss_pred ccc-CCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEE
Confidence 887 4566799999999999999999999999999999999999999999998875 48999999999864 4669999
Q ss_pred EEecCCEEEeeCChhhHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~ 331 (737)
++|++|++++.|+++++.+
T Consensus 595 ~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 595 AGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp EECSSSCCCCEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998864
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.7e-40 Score=350.91 Aligned_cols=199 Identities=24% Similarity=0.391 Sum_probs=153.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||++.+ +.+|+|+||+|++||+++|+||||||||||||+|+|+++| .+|+|
T Consensus 40 ~l~~~~l~~~~----------------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I 95 (290)
T 2bbs_A 40 SLSFSNFSLLG----------------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKI 95 (290)
T ss_dssp ----------C----------------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE--EEEEE
T ss_pred eEEEEEEEEcC----------------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEE
Confidence 69999999842 3589999999999999999999999999999999999874 48999
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccc-------cccc
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAA-------MTII 234 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v 234 (737)
.++| .++||+|++.+++. ||+||+. +.. ... .++++.++.+++.+.. ++.+
T Consensus 96 ~~~g----------~i~~v~Q~~~l~~~-tv~enl~-~~~------~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~ 153 (290)
T 2bbs_A 96 KHSG----------RISFCSQNSWIMPG-TIKENII-GVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVL 153 (290)
T ss_dssp ECCS----------CEEEECSSCCCCSS-BHHHHHH-TTC------CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC
T ss_pred EECC----------EEEEEeCCCccCcc-cHHHHhh-Ccc------cch----HHHHHHHHHhChHHHHHhccccccchh
Confidence 9998 37999999999885 9999998 421 111 1233445555554322 2333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCcEEEEEecCCcHHHHhhcceEE
Q 036088 235 GDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVL-KQIAKSGSIVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 235 g~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 313 (737)
+ +.+..||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||++.. + +.||+++
T Consensus 154 ~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~-~-~~~d~i~ 229 (290)
T 2bbs_A 154 G-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKIL 229 (290)
T ss_dssp -----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHSSEEE
T ss_pred c-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHH-H-HcCCEEE
Confidence 2 235689999999999999999999999999999999999999999974 5554 48999999999753 4 5799999
Q ss_pred EecCCEEEeeCChhhHH
Q 036088 314 FLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 314 lL~~G~iv~~G~~~~~~ 330 (737)
+|++|++++.|+++++.
T Consensus 230 ~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 230 ILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCeEEEeCCHHHHh
Confidence 99999999999998874
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.4e-39 Score=407.11 Aligned_cols=222 Identities=24% Similarity=0.397 Sum_probs=184.3
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|+++||+++|+.+. .+++|+|+||++++||++||+||||||||||+++|+|+++|. +|+
T Consensus 1029 g~i~~~~v~~~y~~~~-----------------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~--~G~ 1089 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRP-----------------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM--AGS 1089 (1284)
T ss_dssp CCEEEEEEEBCCSCGG-----------------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS--EEE
T ss_pred CcEEEEEEEEECCCCC-----------------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCE
Confidence 4699999999997321 246999999999999999999999999999999999998754 999
Q ss_pred EEECCEeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHH-----HHHHHHHHcCCcccccc
Q 036088 161 VTLNGEVLGS---KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRK-----RVDALIDQLGLRSAAMT 232 (737)
Q Consensus 161 I~~~G~~~~~---~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~ 232 (737)
|.+||+++.. ...|+.++||||++.+|+. ||+|||.++...+ ..+.++..+ .+++.++ .+.+..||
T Consensus 1090 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~---~~~~~~i~~~~~~~~~~~~i~--~l~~gldt 1163 (1284)
T 3g5u_A 1090 VFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSR---VVSYEEIVRAAKEANIHQFID--SLPDKYNT 1163 (1284)
T ss_dssp EESSSSCTTSSCHHHHTTSCEEEESSCCCCSS-BHHHHHTCCCSSC---CCCHHHHHHHHHHHTCHHHHS--STTTGGGC
T ss_pred EEECCEEcccCCHHHHHhceEEECCCCccccc-cHHHHHhccCCCC---CCCHHHHHHHHHHhCcHHHHH--hCcccccc
Confidence 9999999864 3457789999999998875 9999998864321 122222211 2223333 23556788
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE
Q 036088 233 IIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 233 ~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.+|+ .+..|||||||||+|||||+++|+||+|||||+|||+.++..|.+.|+++. +|+|||+++|+++. + +.||||
T Consensus 1164 ~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri 1239 (1284)
T 3g5u_A 1164 RVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLI 1239 (1284)
T ss_dssp BCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEE
T ss_pred ccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEE
Confidence 8984 566799999999999999999999999999999999999999999998864 58999999999975 4 679999
Q ss_pred EEecCCEEEeeCChhhHHH
Q 036088 313 IFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 313 ~lL~~G~iv~~G~~~~~~~ 331 (737)
++|++|++++.|+++++.+
T Consensus 1240 ~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1240 VVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEETBEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998864
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2e-36 Score=351.13 Aligned_cols=206 Identities=23% Similarity=0.304 Sum_probs=176.5
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
...++++|+++.|. ...|+++||++++||++||+||||||||||||+|+|+++|. +|
T Consensus 355 ~~~l~~~~l~~~~~---------------------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~--~G 411 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG---------------------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EG 411 (607)
T ss_dssp CEEEEECCEEEECS---------------------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BS
T ss_pred ceEEEEeceEEEec---------------------ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ce
Confidence 45799999999884 12689999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
+|.+ +..++||+|+..+.+.+||.|++....... ....++++++++.+||.+..++.++
T Consensus 412 ~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~---- 470 (607)
T 3bk7_A 412 KVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE---- 470 (607)
T ss_dssp CCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG----
T ss_pred EEEE----------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChh----
Confidence 9976 235899999987778899999987641110 1123568899999999887766654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecC-
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSN- 317 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~- 317 (737)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||+. .+..+|||+++|++
T Consensus 471 -~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~ 548 (607)
T 3bk7_A 471 -DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGE 548 (607)
T ss_dssp -GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEE
T ss_pred -hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCC
Confidence 6999999999999999999999999999999999999999999999974 5999999999976 57889999999986
Q ss_pred -CEEEeeCChhhHHH
Q 036088 318 -GQAVCSEAPSNLSQ 331 (737)
Q Consensus 318 -G~iv~~G~~~~~~~ 331 (737)
|+++..|+++++..
T Consensus 549 ~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 549 PGRHGRALPPMGMRE 563 (607)
T ss_dssp TTTEEEECCCEEHHH
T ss_pred cceEEecCCHHHHHh
Confidence 88888999988754
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.1e-36 Score=347.09 Aligned_cols=206 Identities=23% Similarity=0.312 Sum_probs=175.5
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
...++++|+++.|. ...|+++|+++++||++||+||||||||||+|+|+|++++. +|
T Consensus 285 ~~~l~~~~l~~~~~---------------------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~--~G 341 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG---------------------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EG 341 (538)
T ss_dssp CEEEEECCEEEEET---------------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BC
T ss_pred CeEEEEeeEEEEEC---------------------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--Ce
Confidence 45799999999884 13689999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
+|.+ ...++||+|+..+.+.+||.|++........ ...++++++++.+|+.+..++.++
T Consensus 342 ~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~---- 400 (538)
T 1yqt_A 342 KIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVN---- 400 (538)
T ss_dssp CCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGG----
T ss_pred EEEE----------CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChh----
Confidence 9975 2358999999877788899998875311110 113568889999999877666554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecC-
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSN- 317 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~- 317 (737)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+. ++..+||||++|++
T Consensus 401 -~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~ 478 (538)
T 1yqt_A 401 -ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGE 478 (538)
T ss_dssp -GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEE
T ss_pred -hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 6999999999999999999999999999999999999999999999974 5999999999976 58889999999986
Q ss_pred -CEEEeeCChhhHHH
Q 036088 318 -GQAVCSEAPSNLSQ 331 (737)
Q Consensus 318 -G~iv~~G~~~~~~~ 331 (737)
|+++..|+++++..
T Consensus 479 ~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 479 PGKYGRALPPMGMRE 493 (538)
T ss_dssp TTTEEEECCCEEHHH
T ss_pred cceEeecCCHHHHHh
Confidence 78888999988754
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-35 Score=340.89 Aligned_cols=207 Identities=25% Similarity=0.327 Sum_probs=173.5
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
...++++|+++.|. ...|+++|+++++||+++|+||||||||||+|+|+|+++|. +|
T Consensus 267 ~~~l~~~~l~~~~~---------------------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~--~G 323 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG---------------------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD--EG 323 (538)
T ss_dssp CEEEEECCEEEEET---------------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--BC
T ss_pred cceEEEcceEEEEC---------------------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--Cc
Confidence 45799999999885 13588889999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQH 239 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 239 (737)
+|.++|. .++|++|+......+||+||+.+...... . .....++++++.+||.+..++.++
T Consensus 324 ~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~--~~~~~~~~~l~~~~l~~~~~~~~~---- 384 (538)
T 3ozx_A 324 SVTPEKQ---------ILSYKPQRIFPNYDGTVQQYLENASKDAL----S--TSSWFFEEVTKRLNLHRLLESNVN---- 384 (538)
T ss_dssp CEESSCC---------CEEEECSSCCCCCSSBHHHHHHHHCSSTT----C--TTSHHHHHTTTTTTGGGCTTSBGG----
T ss_pred EEEECCe---------eeEeechhcccccCCCHHHHHHHhhhhcc----c--hhHHHHHHHHHHcCCHHHhcCChh----
Confidence 9997653 46899999776667899999987432111 0 112457889999999887766554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecC-
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSN- 317 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~- 317 (737)
.|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+++++ .|.|||++|||+. ++..+||||++|++
T Consensus 385 -~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 385 -DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGE 462 (538)
T ss_dssp -GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEE
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 6999999999999999999999999999999999999999999999976 5899999999986 58889999999986
Q ss_pred -CEEEeeCChhhHH
Q 036088 318 -GQAVCSEAPSNLS 330 (737)
Q Consensus 318 -G~iv~~G~~~~~~ 330 (737)
|.....+++.++.
T Consensus 463 ~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 463 PEKAGLATSPVTLK 476 (538)
T ss_dssp TTTEEEECCCEEHH
T ss_pred cceeccCCChHHHH
Confidence 5666677766553
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-34 Score=330.18 Aligned_cols=192 Identities=21% Similarity=0.257 Sum_probs=161.0
Q ss_pred ccceeeeeEEEecC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCC
Q 036088 115 KLLLDDISGVASEG-----EITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSM 189 (737)
Q Consensus 115 ~~iL~~vs~~i~~G-----e~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~ 189 (737)
+.+++++||++++| |+++|+||||||||||+++|+|+++|. +|+. +. +..++|++|+......
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~~----~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------IP----KLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------CC----SCCEEEECSSCCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCcC------cc----CCcEEEecccccccCC
Confidence 45789999999998 789999999999999999999998754 7752 21 2357999999766556
Q ss_pred CCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 036088 190 LTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPI 269 (737)
Q Consensus 190 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPT 269 (737)
.||+|++...... ... ..+.++++++.++|.+..++.+ ..|||||||||+|||+|+.+|+||||||||
T Consensus 428 ~tv~e~~~~~~~~----~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 428 GTVRQLFFKKIRG----QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp SBHHHHHHHHCSS----TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred ccHHHHHHHHhhc----ccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 7999987643211 111 1245788999999988776555 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecC--CEEEeeCChhhHHH
Q 036088 270 SGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSN--GQAVCSEAPSNLSQ 331 (737)
Q Consensus 270 sgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~ 331 (737)
+|||+.++..+++.|+++++ .|.|||++|||+. ++..+||||++|++ |+++..|+|+++..
T Consensus 496 ~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 496 AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 99999999999999999864 5999999999986 58889999999986 89999999998754
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.7e-34 Score=337.60 Aligned_cols=208 Identities=21% Similarity=0.306 Sum_probs=139.3
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCC-----cceEEEECCEe
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLM---------------------DAIAGRISKQR-----LKGTVTLNGEV 167 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL---------------------~~L~G~~~~~~-----~~G~I~~~G~~ 167 (737)
.+.+|+||||+|++||+++|+||||||||||+ +++.|+..++. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35699999999999999999999999999998 88888766431 14667777765
Q ss_pred CCcccccceEEEEecCCC-------------------CCCCCCHHHHHHHhhhhcCCCCCcHHHHH------HHHHHHHH
Q 036088 168 LGSKLLKIISAYVMQDDL-------------------LYSMLTIEETLMFSAEFRLPRSLSKEKKR------KRVDALID 222 (737)
Q Consensus 168 ~~~~~~~~~~~yV~Q~~~-------------------l~~~lTV~e~l~~~~~~~~~~~~~~~~~~------~~v~~~l~ 222 (737)
.... .++.+++|+|... .++.+||+||+.+......... .....+ ....++++
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHH
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHH
Confidence 5321 1223445544332 3467899999987533221110 000000 11224688
Q ss_pred HcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEec
Q 036088 223 QLGLRSA-AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPI--LLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIH 299 (737)
Q Consensus 223 ~lgL~~~-~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~--illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 299 (737)
.+||.+. .++.++ .|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++||
T Consensus 188 ~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 188 NVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 8999764 455544 699999999999999999998 99999999999999999999999999888999999999
Q ss_pred CCcHHHHhhcceEEEe------cCCEEEeeCChhhHH
Q 036088 300 QPSHRILSLLDRLIFL------SNGQAVCSEAPSNLS 330 (737)
Q Consensus 300 ~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 330 (737)
|+. ....||++++| ++|++++.|+++++.
T Consensus 263 d~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 263 DED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CHH--HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CHH--HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 975 35679999999 899999999998774
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.4e-33 Score=334.82 Aligned_cols=199 Identities=20% Similarity=0.235 Sum_probs=166.4
Q ss_pred ceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceE
Q 036088 81 LLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGT 160 (737)
Q Consensus 81 ~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 160 (737)
..|...|++++|+ .+.+|+|+||++++|++++|+||||||||||||+|+| |+
T Consensus 434 ~~L~~~~ls~~yg--------------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~ 485 (986)
T 2iw3_A 434 EDLCNCEFSLAYG--------------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQ 485 (986)
T ss_dssp CEEEEEEEEEEET--------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TC
T ss_pred ceeEEeeEEEEEC--------------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CC
Confidence 3677789999995 3569999999999999999999999999999999995 22
Q ss_pred EEECCEeCCcccccceEEEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 036088 161 VTLNGEVLGSKLLKIISAYVMQDD-LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAMTIIGDEQ 238 (737)
Q Consensus 161 I~~~G~~~~~~~~~~~~~yV~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 238 (737)
| +|.+... +..++|++|+. .+++.+||.|++.+ ... .. +++++++++.+||. +..++.++
T Consensus 486 i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~--- 547 (986)
T 2iw3_A 486 V--DGFPTQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPIS--- 547 (986)
T ss_dssp S--TTCCCTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGG---
T ss_pred c--CCCcccc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcc---
Confidence 2 3443321 12368999984 67889999999976 111 11 46789999999995 56666665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 239 HRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
.||||||||++|||+|+.+|+||||||||+|||+.++..+.+.|++ .|.|||++||+.. .+.++||++++|++|
T Consensus 548 --~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G 621 (986)
T 2iw3_A 548 --ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGL 621 (986)
T ss_dssp --GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETT
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999998 5899999999975 578899999999999
Q ss_pred EEE-eeCChhhHHH
Q 036088 319 QAV-CSEAPSNLSQ 331 (737)
Q Consensus 319 ~iv-~~G~~~~~~~ 331 (737)
+++ +.|+++++..
T Consensus 622 ~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 622 KLRKYKGNFTEFVK 635 (986)
T ss_dssp EEEEEESCHHHHHH
T ss_pred eeecCCCCHHHHHh
Confidence 997 6899887754
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=8.1e-35 Score=337.61 Aligned_cols=182 Identities=23% Similarity=0.327 Sum_probs=150.7
Q ss_pred cceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE---------EECCEeCCcc-----cccceEEEEe
Q 036088 116 LLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV---------TLNGEVLGSK-----LLKIISAYVM 181 (737)
Q Consensus 116 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I---------~~~G~~~~~~-----~~~~~~~yV~ 181 (737)
.+|+|+| ++++||+++|+||||||||||||+|+|+++|+ +|++ .++|.++... ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~--~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN--LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC--TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC--CCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4899999 99999999999999999999999999998755 7885 4567654321 1123468898
Q ss_pred cCCCCCC---CCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 036088 182 QDDLLYS---MLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIH 258 (737)
Q Consensus 182 Q~~~l~~---~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~ 258 (737)
|...+++ ..||.|++.... ..++++++++.+||.+..++.++ .|||||||||+|||||+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~~------------~~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKVD------------EVGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLR 245 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHTC------------CSSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred chhhhchhhccccHHHHhhhhH------------HHHHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhc
Confidence 8743322 139999986410 12357889999999988776665 699999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 259 DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 259 ~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
+|++|||||||+|||+.++..+++.|++++++|.|||+++|++. .+..+||+|++|+++
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGE 304 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESC
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCC
Confidence 99999999999999999999999999999888999999999976 578899999999865
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.4e-34 Score=332.04 Aligned_cols=182 Identities=23% Similarity=0.325 Sum_probs=150.4
Q ss_pred cceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE---------EECCEeCCcc-----cccceEEEEe
Q 036088 116 LLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV---------TLNGEVLGSK-----LLKIISAYVM 181 (737)
Q Consensus 116 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I---------~~~G~~~~~~-----~~~~~~~yV~ 181 (737)
.+|+|+| ++++||+++|+||||||||||||+|+|+++|+ +|++ .++|+++... ..+..+++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~--~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN--LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 4899999 99999999999999999999999999998754 7885 4567654210 1123468999
Q ss_pred cCCCCCCC---CCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 036088 182 QDDLLYSM---LTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIH 258 (737)
Q Consensus 182 Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~ 258 (737)
|+..+++. .||.|++.... ..++++++++.+||.+..++.++ .|||||||||+||+||+.
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLR 175 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred hhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhc
Confidence 87544332 38999885311 12357889999999877766654 699999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 259 DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 259 ~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
+|+||||||||++||+.++..+++.|++++++|.|||++||++. .+.++||+|++|++|
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYGE 234 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999888999999999976 588899999999864
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=7.4e-34 Score=340.51 Aligned_cols=209 Identities=23% Similarity=0.333 Sum_probs=162.8
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG 159 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 159 (737)
..+|+++||+++|+.. .+++|+|+||++++||+++|+||||||||||+|+|+|+++|. +|
T Consensus 669 ~~mL~v~nLs~~Y~g~------------------~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~--sG 728 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGT------------------SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT--SG 728 (986)
T ss_dssp SEEEEEEEEEECCTTC------------------SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS--EE
T ss_pred CceEEEEeeEEEeCCC------------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ce
Confidence 3479999999999521 256999999999999999999999999999999999998754 89
Q ss_pred EEEECCEeCCcccccceEEEEecCCCC----CCCCCHHHHHHHhhhhc------------CC------------------
Q 036088 160 TVTLNGEVLGSKLLKIISAYVMQDDLL----YSMLTIEETLMFSAEFR------------LP------------------ 205 (737)
Q Consensus 160 ~I~~~G~~~~~~~~~~~~~yV~Q~~~l----~~~lTV~e~l~~~~~~~------------~~------------------ 205 (737)
+|.++|. ..++|++|+... ....|++|++.+..... ..
T Consensus 729 ~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r 800 (986)
T 2iw3_A 729 EVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPR 800 (986)
T ss_dssp EEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEE
T ss_pred EEEEcCc--------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchh
Confidence 9999863 137899887521 22358888876532100 00
Q ss_pred ----------------------------------CCC--------c--------------------------HHHHHHHH
Q 036088 206 ----------------------------------RSL--------S--------------------------KEKKRKRV 217 (737)
Q Consensus 206 ----------------------------------~~~--------~--------------------------~~~~~~~v 217 (737)
..+ + ....++++
T Consensus 801 ~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i 880 (986)
T 2iw3_A 801 RIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEI 880 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHH
T ss_pred hhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHH
Confidence 000 0 00013568
Q ss_pred HHHHHHcCCccc--ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEE
Q 036088 218 DALIDQLGLRSA--AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVI 295 (737)
Q Consensus 218 ~~~l~~lgL~~~--~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi 295 (737)
+++++.+||... .+..+ ++|||||||||+|||+|+.+|+||||||||+|||+.+...+.+.|+++ +.|||
T Consensus 881 ~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVI 952 (986)
T 2iw3_A 881 EEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVI 952 (986)
T ss_dssp HHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEE
T ss_pred HHHHHHcCCCchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEE
Confidence 899999999742 34444 469999999999999999999999999999999999999999888765 57999
Q ss_pred EEecCCcHHHHhhcceEEEecCCEEEeeCC
Q 036088 296 MSIHQPSHRILSLLDRLIFLSNGQAVCSEA 325 (737)
Q Consensus 296 ~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 325 (737)
++||++. .+.++||++++|++|+++..|+
T Consensus 953 iISHD~e-~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 953 IITHSAE-FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp EECSCHH-HHTTTCCEEECCBTTBCCC---
T ss_pred EEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 9999975 4778999999999999987764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.3e-32 Score=324.47 Aligned_cols=197 Identities=25% Similarity=0.368 Sum_probs=150.8
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHH----------------------cCCCCCCcceEEEECCEeCCccc
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIA----------------------GRISKQRLKGTVTLNGEVLGSKL 172 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~----------------------G~~~~~~~~G~I~~~G~~~~~~~ 172 (737)
+.+|+|||++|++||++||+||||||||||+++|. |+. ...|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~---~~~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE---HLDKVIDIDQSPIGRTP 411 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG---GCSEEEECCSSCSCSST
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc---ccCceeEeccccCCCCC
Confidence 45899999999999999999999999999998764 221 12478888888764210
Q ss_pred c--------------------------------------------cceEEEEecCCCCCC--------------------
Q 036088 173 L--------------------------------------------KIISAYVMQDDLLYS-------------------- 188 (737)
Q Consensus 173 ~--------------------------------------------~~~~~yV~Q~~~l~~-------------------- 188 (737)
. ....|+++|+..+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 0 001134444333322
Q ss_pred ------------CCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHH
Q 036088 189 ------------MLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA-AMTIIGDEQHRGVSGGERRRVSIGVD 255 (737)
Q Consensus 189 ------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRvsiA~a 255 (737)
.+||+||+.+.... ...+++.+.++.+||... .+. .+..|||||||||+||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAAE 557 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHH
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccC-----CchhCCHHHHHHHHHHHH
Confidence 47999999885421 123456778889998642 333 345799999999999999
Q ss_pred HhhCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe------cCCEEEeeCCh
Q 036088 256 IIHDP---ILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL------SNGQAVCSEAP 326 (737)
Q Consensus 256 L~~~p---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~ 326 (737)
|+.+| +||||||||+|||+.++..+++.|++++++|+|||++||++. ..+.||+|++| ++|++++.|++
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCCCEEEEecCH
Confidence 99887 599999999999999999999999999888999999999985 35789999999 89999999999
Q ss_pred hhHH
Q 036088 327 SNLS 330 (737)
Q Consensus 327 ~~~~ 330 (737)
+++.
T Consensus 636 ~~~~ 639 (670)
T 3ux8_A 636 EEVA 639 (670)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-31 Score=308.98 Aligned_cols=189 Identities=22% Similarity=0.294 Sum_probs=144.3
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE-----------EECCEeCCcc---cccce--EE
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV-----------TLNGEVLGSK---LLKII--SA 178 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I-----------~~~G~~~~~~---~~~~~--~~ 178 (737)
...|++++ .+++||+++|+||||||||||||+|+|+++|+ +|+| .+.|.++... ...+. ..
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~--~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC--CceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 34677777 68999999999999999999999999998755 7987 2334332110 00111 12
Q ss_pred EEecCCCC------CCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHH
Q 036088 179 YVMQDDLL------YSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSI 252 (737)
Q Consensus 179 yV~Q~~~l------~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsi 252 (737)
+.+|.... -+..++.+++.... . ...++++++++.+||.+..++.++ .|||||||||+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~i 232 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAI 232 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHH
Confidence 33443211 11235666654321 0 123568899999999988876665 699999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEe
Q 036088 253 GVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVC 322 (737)
Q Consensus 253 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 322 (737)
|+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++..++|+|++|.+|..++
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 99999999999999999999999999999999999888999999999986 5889999999998775444
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1e-31 Score=307.73 Aligned_cols=174 Identities=21% Similarity=0.296 Sum_probs=138.8
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE-----------EECCEeCCcc---cc--cceEEEEecC----C
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV-----------TLNGEVLGSK---LL--KIISAYVMQD----D 184 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I-----------~~~G~~~~~~---~~--~~~~~yV~Q~----~ 184 (737)
.++||++||+||||||||||||+|+|+++|+ +|+| .++|+++... .. ...+..+.|. +
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~--~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN--FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC--TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 4599999999999999999999999998765 7988 6777765321 00 1112333443 3
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 036088 185 LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLF 264 (737)
Q Consensus 185 ~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~ill 264 (737)
.++. .||+|++.... .+++++++++.+|+.+..++.++ .|||||||||+||+||+.+|+|||
T Consensus 100 ~~~~-~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 100 KFLK-GTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp TTCC-SBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhcc-CcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3333 38888764211 12357889999999988776665 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 265 LDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 265 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
|||||++||+.++..+.+.|+++++ |+|||+++|++. ++..+||+|++|++|..
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESS 215 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETT
T ss_pred EECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCcc
Confidence 9999999999999999999999976 999999999986 58899999999987543
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.5e-29 Score=303.08 Aligned_cols=201 Identities=23% Similarity=0.374 Sum_probs=155.4
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHH---------HHHHcCCCCC----Ccc------eEEEECCEeCCccc---
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLM---------DAIAGRISKQ----RLK------GTVTLNGEVLGSKL--- 172 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL---------~~L~G~~~~~----~~~------G~I~~~G~~~~~~~--- 172 (737)
...|+|||++|++|++++|+||||||||||+ +++.+...+. ..+ +.|.+++.++....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 4555443211 112 34566655542100
Q ss_pred -----------------------------------------ccceEEEEecCCCCCC-----------------------
Q 036088 173 -----------------------------------------LKIISAYVMQDDLLYS----------------------- 188 (737)
Q Consensus 173 -----------------------------------------~~~~~~yV~Q~~~l~~----------------------- 188 (737)
..+..|++.|+..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0012367887766655
Q ss_pred ---------CCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 036088 189 ---------MLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHD 259 (737)
Q Consensus 189 ---------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~ 259 (737)
.+||.|++.|.... ....++.++|+.+||.... + +..+..|||||||||+|||+|+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhC
Confidence 36888888875321 1235678899999997422 2 234567999999999999999987
Q ss_pred C---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe------cCCEEEeeCChhhHH
Q 036088 260 P---ILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL------SNGQAVCSEAPSNLS 330 (737)
Q Consensus 260 p---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 330 (737)
| +||||||||+|||+.+...+++.|++++++|.|||+++|++. ..+.||+|++| ++|++++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 799999999999999999999999999988999999999975 35679999999 899999999999885
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1.1e-29 Score=301.87 Aligned_cols=198 Identities=23% Similarity=0.373 Sum_probs=149.9
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHH-HHcCCC-------C----------------CCcce-------EEEECC
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDA-IAGRIS-------K----------------QRLKG-------TVTLNG 165 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~-L~G~~~-------~----------------~~~~G-------~I~~~G 165 (737)
.|+|||++|++||++||+|+||||||||+++ |+|.+. + .+.+| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999996 765431 1 12367 789999
Q ss_pred EeCCccc-------------ccc---------eEEEEec----------------------CCCCC--------------
Q 036088 166 EVLGSKL-------------LKI---------ISAYVMQ----------------------DDLLY-------------- 187 (737)
Q Consensus 166 ~~~~~~~-------------~~~---------~~~yV~Q----------------------~~~l~-------------- 187 (737)
+++.... .|+ .+||.++ +-.++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 8874211 010 1122211 11112
Q ss_pred ----------CC--------CCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHH
Q 036088 188 ----------SM--------LTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSA-AMTIIGDEQHRGVSGGERR 248 (737)
Q Consensus 188 ----------~~--------lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrq 248 (737)
.. +||.|++.|... . ...+++.++|+.+||... .+. .+..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~------~---~~~~~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFAD------E---SAIFRALDTLREVGLGYLRLGQ-----PATELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT------S---HHHHHHHHHHHHTTCTTSBTTC-----CGGGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhhc------c---hHHHHHHHHHHHcCCCcccccC-----CcccCCHHHHH
Confidence 12 345555544211 1 123478899999999763 333 34579999999
Q ss_pred HHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe------cCCE
Q 036088 249 RVSIGVDIIHD---PILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL------SNGQ 319 (737)
Q Consensus 249 RvsiA~aL~~~---p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~ 319 (737)
||+||++|+.+ |+||||||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||+|++| ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 7999999999999999999999999999988999999999975 35 889999999 6899
Q ss_pred EEeeCChhhHH
Q 036088 320 AVCSEAPSNLS 330 (737)
Q Consensus 320 iv~~G~~~~~~ 330 (737)
+++.|+++++.
T Consensus 816 Iv~~g~~~el~ 826 (842)
T 2vf7_A 816 LVAQGTPAEVA 826 (842)
T ss_dssp EEEEECHHHHT
T ss_pred EEEEcCHHHHH
Confidence 99999998763
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=8.4e-30 Score=303.26 Aligned_cols=198 Identities=25% Similarity=0.393 Sum_probs=153.3
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHH-cCC---------CCCC---cce------EEEECCEeCCccc-----
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIA-GRI---------SKQR---LKG------TVTLNGEVLGSKL----- 172 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~-G~~---------~~~~---~~G------~I~~~G~~~~~~~----- 172 (737)
.|+|||++|++||+++|+|+||||||||+++|+ |.+ .++. ..| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999854 211 1111 123 5889998874210
Q ss_pred --------c---------cceEEEEecCCCCC----------------------C-------------------------
Q 036088 173 --------L---------KIISAYVMQDDLLY----------------------S------------------------- 188 (737)
Q Consensus 173 --------~---------~~~~~yV~Q~~~l~----------------------~------------------------- 188 (737)
. .+.+||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 0 12246777743211 1
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 036088 189 -------MLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDP 260 (737)
Q Consensus 189 -------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p 260 (737)
.+||.|++.|... .. ..+++.++|+.+||.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~---~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IP---KIKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CH---HHHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------ch---hHHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 4678888876432 11 1234578999999986 44444 4479999999999999999865
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe------cCCEEEeeCChhhHH
Q 036088 261 ---ILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL------SNGQAVCSEAPSNLS 330 (737)
Q Consensus 261 ---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 330 (737)
+||||||||+|||+.+...+++.|++++++|.|||+++|++.. .+.||+|++| ++|++++.|+++++.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~--i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH--HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999999999999999889999999999753 4789999999 689999999998874
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=2.7e-29 Score=299.91 Aligned_cols=199 Identities=24% Similarity=0.349 Sum_probs=150.6
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHH-c----CCCCC-Ccce-------------EEEECCEeCCccc-----
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIA-G----RISKQ-RLKG-------------TVTLNGEVLGSKL----- 172 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~-G----~~~~~-~~~G-------------~I~~~G~~~~~~~----- 172 (737)
.|+|||++|++|++++|+|+||||||||+++|. | .+.+. ...| .|.++|.++....
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 699999999999999999999999999999853 2 22110 0122 3566666653110
Q ss_pred -----------------ccceEEEEecCCCC----------------------CC-------------------------
Q 036088 173 -----------------LKIISAYVMQDDLL----------------------YS------------------------- 188 (737)
Q Consensus 173 -----------------~~~~~~yV~Q~~~l----------------------~~------------------------- 188 (737)
..+.+||++|...+ ++
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 01224676664221 11
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 036088 189 -------MLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS-AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDP 260 (737)
Q Consensus 189 -------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p 260 (737)
.+||.|++.|... .. ...++.++|+.+||.. ..+.. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~~---~~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------IA---GVHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------CH---HHHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------ch---HHHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 3577788776432 11 1234578999999976 34443 4579999999999999999865
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe------cCCEEEeeCChhhHHH
Q 036088 261 ---ILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL------SNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 261 ---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 331 (737)
+||||||||+|||+.+...+++.|++++++|.|||+++|++.. .+.||+|++| ++|++++.|+++++..
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~--i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDV--IKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH--HHhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 9999999999999999999999999999889999999999753 4789999999 6899999999988753
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=2.5e-28 Score=271.41 Aligned_cols=203 Identities=19% Similarity=0.228 Sum_probs=148.7
Q ss_pred cceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC------------------------------------CCcce
Q 036088 116 LLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISK------------------------------------QRLKG 159 (737)
Q Consensus 116 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~------------------------------------~~~~G 159 (737)
.+++++++++.+| +++|+|||||||||||++|.++... .+.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3799999999999 9999999999999999999877642 12368
Q ss_pred EEEECCEeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHhhhhcC-----------------------CCC----C
Q 036088 160 TVTLNGEVLGSKL----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRL-----------------------PRS----L 208 (737)
Q Consensus 160 ~I~~~G~~~~~~~----~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~-----------------------~~~----~ 208 (737)
++++||++++... .+..+++++|++.++.. +..+...|.-.... ... .
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 9999999987422 22347999999877654 66555544221100 000 0
Q ss_pred c------------------------------HHHHHHHHHHHHHHcCCcccc----------------cc---cccC---
Q 036088 209 S------------------------------KEKKRKRVDALIDQLGLRSAA----------------MT---IIGD--- 236 (737)
Q Consensus 209 ~------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~vg~--- 236 (737)
. .....+.+++.++.+++.... +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0 000123455666777665310 00 1110
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 237 ---EQHRG-VSGGERRRVSIGVDIIHDP--ILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 237 ---~~~~~-LSGGqrqRvsiA~aL~~~p--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
...+. ||||||||++||++|+.+| ++|||||||+|||+.+...+.+.|++++ +|.|||+|||++. +.+.||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 11112 6999999999999999999 9999999999999999999999999998 5899999999973 568999
Q ss_pred eEEEe----cCCEEEee
Q 036088 311 RLIFL----SNGQAVCS 323 (737)
Q Consensus 311 ~v~lL----~~G~iv~~ 323 (737)
++++| ++|+++..
T Consensus 364 ~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEEEEEETTEEEEE
T ss_pred eEEEEEEeccCCceEEE
Confidence 99999 89998754
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.9e-31 Score=295.87 Aligned_cols=186 Identities=13% Similarity=0.141 Sum_probs=148.5
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce-E-EEECCEeCCcccccceEEEEecCCC---CCCCCCH
Q 036088 118 LDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG-T-VTLNGEVLGSKLLKIISAYVMQDDL---LYSMLTI 192 (737)
Q Consensus 118 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G-~-I~~~G~~~~~~~~~~~~~yV~Q~~~---l~~~lTV 192 (737)
+.++|+++++|++++|+||||||||||+|+|+|+..+ .+| + |.++|. .++.++||||+.. +.+.+||
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p--~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK--FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH--HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc--cCCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3578999999999999999999999999999999864 489 9 999982 2556799999984 4556799
Q ss_pred HHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH--HhhCCcE----EEEe
Q 036088 193 EETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVD--IIHDPIL----LFLD 266 (737)
Q Consensus 193 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~a--L~~~p~i----llLD 266 (737)
+||+ |+....... ...+++.++++.+|+.+..+ ...|||||||||+|||+ |+.+|++ ||||
T Consensus 200 ~eni-~~~~~~~~~-----~~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLD 266 (460)
T 2npi_A 200 QLPT-WGQSLTSGA-----TLLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVD 266 (460)
T ss_dssp TCTT-CSCBCBSSC-----CSSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhhh-cccccccCc-----chHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEe
Confidence 9998 754321110 01234567788888876654 34699999999999999 9999999 9999
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCc--H---HHHhhcce-----EEEec-CCEEEeeCChhhH
Q 036088 267 E-PISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPS--H---RILSLLDR-----LIFLS-NGQAVCSEAPSNL 329 (737)
Q Consensus 267 E-PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~--~---~i~~~~D~-----v~lL~-~G~iv~~G~~~~~ 329 (737)
| ||++||+. ...+.+.+++ .++|+|+++|+.. . ++.+++|+ |++|+ +|+++ .|+++++
T Consensus 267 EpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 267 TPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 9 99999999 4445544443 3789999999976 1 46689999 99999 89999 8988765
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=9.5e-29 Score=250.05 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=102.4
Q ss_pred ccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC--cccccceEEEEecCCCCCCCC
Q 036088 113 KTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLG--SKLLKIISAYVMQDDLLYSML 190 (737)
Q Consensus 113 ~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--~~~~~~~~~yV~Q~~~l~~~l 190 (737)
+.+.+|+|| ++||+++|+|||||||||||++|+|+ +|+ +|+|. +.++. ....++.+|||+|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~--~G~I~--~~~~~~~~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ--SKQVS--RIILTRPAVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH--TTSCS--EEEEEECSCCTTCCCCSSCC--------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc--CCeee--eEEecCCchhhhcceEEecCCH------
Confidence 346799996 89999999999999999999999999 744 78884 22221 123456789999976
Q ss_pred CHHHHH-HHhhhh--cCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 036088 191 TIEETL-MFSAEF--RLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDE 267 (737)
Q Consensus 191 TV~e~l-~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDE 267 (737)
+||+ .+.... ...... ..++++++++. | + ||||||+|||+|+.+|++|||||
T Consensus 76 --~enl~~~~~~~~~~~~~~~----~~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 --NEKIDPYLRPLHDALRDMV----EPEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ------CTTTHHHHHHHTTTS----CTTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred --HHHHHHHHHHHHHHHHHhc----cHHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4555 231100 000000 11345555553 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCc
Q 036088 268 PISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPS 302 (737)
Q Consensus 268 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 302 (737)
||+| ++..+++.|+++ ++|+||| +||++.
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 889999999998 6689999 999975
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.92 E-value=6.9e-25 Score=240.29 Aligned_cols=83 Identities=28% Similarity=0.475 Sum_probs=76.7
Q ss_pred CCCCCCHHHHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 238 QHRGVSGGERRRVSIGVDII------HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 238 ~~~~LSGGqrqRvsiA~aL~------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
.+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++++.|+|||++||++. ..+.||+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCE
Confidence 45679999999999999999 799999999999999999999999999999888999999999975 3788999
Q ss_pred EEEecCCEEEe
Q 036088 312 LIFLSNGQAVC 322 (737)
Q Consensus 312 v~lL~~G~iv~ 322 (737)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=1.4e-24 Score=233.96 Aligned_cols=87 Identities=24% Similarity=0.287 Sum_probs=73.3
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceE--
Q 036088 239 HRGVSGGERRRVSIGVDII----HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRL-- 312 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v-- 312 (737)
+..||||||||++||++|+ .+|++|||||||++||+.....+.+.|++++ +|.+||++||++. +.+.||++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 4579999999999999997 5889999999999999999999999999985 4889999999964 67899987
Q ss_pred EEecCCE-EEeeCChhh
Q 036088 313 IFLSNGQ-AVCSEAPSN 328 (737)
Q Consensus 313 ~lL~~G~-iv~~G~~~~ 328 (737)
++|.+|+ .+.....++
T Consensus 294 v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEESSSCEEEEECCC--
T ss_pred EEEeCCEEEEEEEEcch
Confidence 7888874 444444444
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=2.5e-25 Score=217.78 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=101.0
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCC-CCCCCHHHHHHH
Q 036088 120 DISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLL-YSMLTIEETLMF 198 (737)
Q Consensus 120 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l-~~~lTV~e~l~~ 198 (737)
||||++++||+++|+||||||||||++++.+- ...+++ ....|+++|++.- ...-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~--------~~~~~~--------d~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP--------TEVISS--------DFCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG--------GGEEEH--------HHHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC--------CeEEcc--------HHHHHHhcCcccchhhHHHHHHHHH-
Confidence 68999999999999999999999999996531 111111 1122677776421 00001122211
Q ss_pred hhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH---
Q 036088 199 SAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDST--- 275 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~--- 275 (737)
.... .....|.....+.. ...|||||||++||++++.+|++|+|||||++||+.
T Consensus 64 ----------------~~~~-~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIVS-KRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHHH-HHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHHH-HHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1111 22234544333321 236999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHHcCcEEEEEecCCc
Q 036088 276 -------------SAFNVVKVLKQIAKSGSIVIMSIHQPS 302 (737)
Q Consensus 276 -------------~~~~i~~~L~~l~~~g~tvi~~~H~~~ 302 (737)
....+.+.|++++++|.|+|++||++.
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558899999999877999999999975
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=1.1e-26 Score=257.12 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=140.2
Q ss_pred ccceeeeeEEEecCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCccccc
Q 036088 115 KLLLDDISGVASEGE--------------------ITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLK 174 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge--------------------~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 174 (737)
+.+|++||+++++|+ ++||+||||||||||+|+|+|+.++. +|+|.++|.+.+ +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~--~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE--EGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS--TTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc--CceEEECCeecc----e
Confidence 569999999999999 99999999999999999999998754 899999998753 1
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH--HHHHHHH
Q 036088 175 IISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGG--ERRRVSI 252 (737)
Q Consensus 175 ~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG--qrqRvsi 252 (737)
.+|++|++ .++.+|+.||+.++.. +.+++++++.+++.+.. ..+ . |||| ||||+.|
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~~-~~~-----~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEYD-FFI-----I-ISATRFKKNDIDI 167 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGCS-EEE-----E-EESSCCCHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCccC-CeE-----E-eCCCCccHHHHHH
Confidence 27899985 5778899998765421 13478899999987642 222 2 8999 9999999
Q ss_pred HHHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC----cEEEEEecCCcH-HHHhhcceE
Q 036088 253 GVDIIH----------DPILLFLDEPISGLDSTSAFNVVKVLKQIA-----KSG----SIVIMSIHQPSH-RILSLLDRL 312 (737)
Q Consensus 253 A~aL~~----------~p~illLDEPTsgLD~~~~~~i~~~L~~l~-----~~g----~tvi~~~H~~~~-~i~~~~D~v 312 (737)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+... .+.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999985 323 578899998752 266677776
Q ss_pred E-EecCC
Q 036088 313 I-FLSNG 318 (737)
Q Consensus 313 ~-lL~~G 318 (737)
. .|.+|
T Consensus 248 ~~~Lpeg 254 (413)
T 1tq4_A 248 ISDLPIY 254 (413)
T ss_dssp HHHSCGG
T ss_pred HHhCccc
Confidence 4 34333
No 71
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.90 E-value=4e-28 Score=258.36 Aligned_cols=169 Identities=14% Similarity=0.162 Sum_probs=134.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||++.|+ +.+|+++|++|++|++++|+||||||||||+++|+|++ +|+|
T Consensus 101 ~i~~~~vs~~y~---------------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I 154 (305)
T 2v9p_A 101 FFNYQNIELITF---------------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV 154 (305)
T ss_dssp HHHHTTCCHHHH---------------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE
T ss_pred eEEEEEEEEEcC---------------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE
Confidence 478888888774 35899999999999999999999999999999999996 5888
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHH-HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE-TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHR 240 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e-~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 240 (737)
++|++|++.++.. |++| |+.+... .+. .+.+.++.+ |.+..| +.
T Consensus 155 ---------------~~~v~q~~~lf~~-ti~~~ni~~~~~------~~~-----~~~~~i~~~-L~~gld-------g~ 199 (305)
T 2v9p_A 155 ---------------LSFANHKSHFWLA-SLADTRAALVDD------ATH-----ACWRYFDTY-LRNALD-------GY 199 (305)
T ss_dssp ---------------ECGGGTTSGGGGG-GGTTCSCEEEEE------ECH-----HHHHHHHHT-TTGGGG-------TC
T ss_pred ---------------EEEecCccccccc-cHHHHhhccCcc------ccH-----HHHHHHHHH-hHccCC-------cc
Confidence 3578899888885 8887 8876421 111 455666664 444443 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 241 GVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
.|||||||| ||||+.+|+||| ||+||+.++..+.. .+|++. ..+.+|+| +|++|++
T Consensus 200 ~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 200 PVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGEQ 255 (305)
T ss_dssp CEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC---C
T ss_pred CcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCEE
Confidence 799999999 999999999999 99999999888862 289876 36899999 9999999
Q ss_pred EeeCChhhHHHHHhh
Q 036088 321 VCSEAPSNLSQFFGA 335 (737)
Q Consensus 321 v~~G~~~~~~~~f~~ 335 (737)
++.|+++++...|..
T Consensus 256 v~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 256 PFNITDADWKSFFVR 270 (305)
T ss_dssp CCCCCHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHH
Confidence 999999998555544
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.88 E-value=6.1e-24 Score=209.67 Aligned_cols=146 Identities=14% Similarity=0.079 Sum_probs=102.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK---LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPR 206 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~ 206 (737)
.++|+||||||||||+++|+|++. |.++|.+.... ..++.+||++|+. ++.+++ ++ ...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~--- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SKF--- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ETT---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hhc---
Confidence 589999999999999999999963 44555443211 3356689999975 222332 11 100
Q ss_pred CCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH-----HhhCCcEEEEeC--CCCCCCHHHHHH
Q 036088 207 SLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVD-----IIHDPILLFLDE--PISGLDSTSAFN 279 (737)
Q Consensus 207 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~a-----L~~~p~illLDE--PTsgLD~~~~~~ 279 (737)
.. -.+..+ ..+..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 64 -~~----------------~~~~~~-----~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 64 -FT----------------SKKLVG-----SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -CC----------------CSSEET-----TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -CC----------------cccccc-----ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 00 001222 2344699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHcCcEEEEEec--CCcHHHHhhcceEEEecCCEEEe
Q 036088 280 VVKVLKQIAKSGSIVIMSIH--QPSHRILSLLDRLIFLSNGQAVC 322 (737)
Q Consensus 280 i~~~L~~l~~~g~tvi~~~H--~~~~~i~~~~D~v~lL~~G~iv~ 322 (737)
+.+.|++ .+.|+|+++| +....+.+++|+ .+|+++.
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 9888876 4677888886 233457778887 5566654
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.88 E-value=1.6e-26 Score=233.03 Aligned_cols=182 Identities=16% Similarity=0.095 Sum_probs=121.4
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
.+.+++| .++++||+++|+||||||||||+|+|+|+++ ...+.+.+.+.+.. ...++.++|++|++.+++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhc
Confidence 4668888 6899999999999999999999999999974 22332222222211 12245579999998888888888
Q ss_pred HHHHHhhhhcC---CCCCcHHHHHHHHHHH------HHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 036088 194 ETLMFSAEFRL---PRSLSKEKKRKRVDAL------IDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLF 264 (737)
Q Consensus 194 e~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~ill 264 (737)
|++........ ....++.+.++++++. ++.+|+.+.++... +.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 87643211100 0123344555566665 55556655444433 3466 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 265 LDEPISGL----DSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 265 LDEPTsgL----D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
|||||+|+ |+..+.++.+.++++.+ .|.|+|+++|++. ++.++||+|++|.+
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 99999998 78899999999999975 4899999999986 58999999999854
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.86 E-value=1.5e-23 Score=223.65 Aligned_cols=174 Identities=16% Similarity=0.168 Sum_probs=134.2
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc-------cc--cceEEEEecCCC-CC
Q 036088 118 LDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK-------LL--KIISAYVMQDDL-LY 187 (737)
Q Consensus 118 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~-------~~--~~~~~yV~Q~~~-l~ 187 (737)
++++|+++++|++++|+||||||||||++.|+|++++. +|+|.++|.++... .+ +..++|++|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 35788999999999999999999999999999998754 79999999987532 12 235899999988 88
Q ss_pred CCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEE
Q 036088 188 SMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPI--LLFL 265 (737)
Q Consensus 188 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~--illL 265 (737)
+.+||+|++.++.... . -..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~----~--------d~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG----Y--------DVVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT----C--------SEEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC----C--------cchHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 8899999998864211 0 0135667788776666554 599 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCc--------HHHHhhcceEEEecCCEE
Q 036088 266 DEPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPS--------HRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 266 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~lL~~G~i 320 (737)
| ||+|||+... ++++.+ .|.|+|++||... ..+.+..+.|.++..|+.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 9999998754 345553 4899999999432 123345668888888864
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.85 E-value=1.3e-23 Score=220.69 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=99.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCc
Q 036088 130 ITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLS 209 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 209 (737)
.++|+||||||||||+|+|+|+..+. +|+|.++|+++.....++.++|++|++.+++.+||.||+.|+...... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~-- 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-N-- 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-T--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC--CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-H--
Confidence 47999999999999999999998754 899999999886555567789999999999999999999987643311 1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 036088 210 KEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK 289 (737)
Q Consensus 210 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~ 289 (737)
..+.+.+.++ .+..+...+ .||||||||++|||+++. +++|||||+|||+.. .+.++++.+
T Consensus 79 ---~~~~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 79 ---CWEPIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp ---CSHHHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred ---HHHHHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1122333333 233334433 599999999999999875 999999999999987 556666666
Q ss_pred cCcEEEEEecCCc
Q 036088 290 SGSIVIMSIHQPS 302 (737)
Q Consensus 290 ~g~tvi~~~H~~~ 302 (737)
. .+||+++|...
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 88999988843
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.84 E-value=4.6e-23 Score=230.50 Aligned_cols=177 Identities=14% Similarity=0.091 Sum_probs=142.0
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCE---eCCc--------ccccceEEEEecC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGE---VLGS--------KLLKIISAYVMQD 183 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~---~~~~--------~~~~~~~~yV~Q~ 183 (737)
..+|+++ +++.+||+++|+|||||||||||++|+|+.+++ .|.|.++|+ ++.. ...++.++||+|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~--~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD--VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC--eEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 5699999 999999999999999999999999999998754 899999998 4432 1245678999995
Q ss_pred -CCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 036088 184 -DLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPIL 262 (737)
Q Consensus 184 -~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~i 262 (737)
+.+++.+||.+|+.+.++..... .+++ ....|. ...+|+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~-------~~~v---------~~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDR-------GQHV---------LLIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTT-------TCEE---------EEEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC-------CCCH---------HHHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 56777889999998865431000 0000 111111 33599999 999999 889988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH---c-Cc-----EEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhH
Q 036088 263 LFLDEPISGLDSTSAFNVVKVLKQIAK---S-GS-----IVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 263 llLDEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
|+|||+.+...+.+.++++.+ + |. ||++++||++ ..++|++++|.+|+++..|++.++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 999999999999999999876 3 64 8999999987 468999999999999999887665
No 77
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.84 E-value=1.9e-22 Score=217.82 Aligned_cols=132 Identities=18% Similarity=0.184 Sum_probs=108.2
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCc-ccccceEEEEecCCCCCCCCCHHHH
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS-KLLKIISAYVMQDDLLYSMLTIEET 195 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~~~~~~~yV~Q~~~l~~~lTV~e~ 195 (737)
+++++|+.+++|++++|+||||||||||+++|+|++++. +|.|.++|.+... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~--~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT--SCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CcEEEECCeeccccccchhEEEEEe--------------
Confidence 899999999999999999999999999999999998754 8999999864211 11233334332
Q ss_pred HHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 036088 196 LMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDST 275 (737)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~ 275 (737)
+ |||+||++||++|..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 0 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 276 SAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 276 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
.++.+.|+.+...+.|+|+|+|+++ +.+.+||+++|.+|+.
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456778777653457999999987 5789999999988864
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.83 E-value=1.6e-22 Score=219.97 Aligned_cols=173 Identities=16% Similarity=0.179 Sum_probs=134.6
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc-------cc--cceEEEEecCCC-CCC
Q 036088 119 DDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK-------LL--KIISAYVMQDDL-LYS 188 (737)
Q Consensus 119 ~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~-------~~--~~~~~yV~Q~~~-l~~ 188 (737)
+++|+++++|++++|+||||||||||++.|+|++++. +|+|.++|.++... .+ +..++|++|++. +++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc--CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 4688899999999999999999999999999998754 79999999987532 11 345899999988 888
Q ss_pred CCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEe
Q 036088 189 MLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPI--LLFLD 266 (737)
Q Consensus 189 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~--illLD 266 (737)
.+||+|++.++.... .. ..+++.+|+.+..+..+. +|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 899999999864211 00 135567788776665554 599 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCc--------HHHHhhcceEEEecCCEE
Q 036088 267 EPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPS--------HRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 267 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~lL~~G~i 320 (737)
||+|||+... ++++.+ .|.|+|++||... ..+....+.|..+..|+.
T Consensus 286 -pttglD~~~~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 -GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -GGGGGGGHHH------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCCCHHHH------HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9999998755 244543 4899999999421 123345678888887764
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.83 E-value=1.9e-20 Score=203.90 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=76.0
Q ss_pred CCC-CCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHh
Q 036088 238 QHR-GVSGGERRRVSIGVDII---------HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILS 307 (737)
Q Consensus 238 ~~~-~LSGGqrqRvsiA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 307 (737)
.++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. ..
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~---- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP---- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT----
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc----
Confidence 445 69999999999999999 8999999999999999999999999998874 689999994 32
Q ss_pred hcceEEEecCCEEEeeCChhhH
Q 036088 308 LLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 308 ~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
.+|++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998875
No 80
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.83 E-value=7.7e-25 Score=222.91 Aligned_cols=153 Identities=15% Similarity=0.095 Sum_probs=102.5
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc----cccceEEEEecCCCCCCCC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK----LLKIISAYVMQDDLLYSML 190 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~----~~~~~~~yV~Q~~~l~~~l 190 (737)
..-|+||||++++|++++|+||||||||||+++|+|++ + |+|.+ |.++... ..++.++|++|++.+|+.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 44799999999999999999999999999999999986 2 88999 7765321 1345578999988766544
Q ss_pred C-HHHHHHH---hhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCc
Q 036088 191 T-IEETLMF---SAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSI-----GVDIIHDPI 261 (737)
Q Consensus 191 T-V~e~l~~---~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsi-----A~aL~~~p~ 261 (737)
+ +.+++.+ ..... ..+ .+.++++++...+. .+. ..||||||||++| +++++.+|+
T Consensus 84 ~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~~-----il~----~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKIC-----LFE----MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp HHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCEE-----EEE----ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred hhccchhhhhhcccccC---CCc----HHHHHHHHhCCCcE-----EEE----ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 3 1122211 11100 112 23466677654321 111 3599999999999 899999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 036088 262 LLFLDEPISGLDSTSAFNVVKVLKQIAK 289 (737)
Q Consensus 262 illLDEPTsgLD~~~~~~i~~~L~~l~~ 289 (737)
+++|||||+++|..+...|.+.|+++.+
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988754
No 81
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.82 E-value=1.5e-21 Score=207.28 Aligned_cols=185 Identities=18% Similarity=0.118 Sum_probs=123.3
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce-EEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG-TVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G-~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+.+......++++.++.|+.. +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 45899999999999999999999999999999999997643 57 67554433333233333333333321 1233
Q ss_pred HHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH-HHHHHHHHHHhhCCcEEEEeCCCC--
Q 036088 194 ETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGE-RRRVSIGVDIIHDPILLFLDEPIS-- 270 (737)
Q Consensus 194 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGq-rqRvsiA~aL~~~p~illLDEPTs-- 270 (737)
+++.... ++..+..+.++++++..++. .+ ..+..+|.+| +||+. |+++..+|+++++||||+
T Consensus 96 ~~l~~~~-------~~~~~~~~~~~~~l~~~~l~--i~-----~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-------IENGKFDQWFDELFGNDTFH--LY-----DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-------HHHTHHHHHHHHHHSSSCEE--EE-----CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-------CCHHHHHHHHHHHhccCCEE--EE-----CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4443321 11222334455554433321 11 1123588998 67777 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHHc-CcEEEEEecCCc-H--------------------HHHhhcceEEEecCCEE
Q 036088 271 -G---LDS-TSAFNVVKVLKQIAKS-GSIVIMSIHQPS-H--------------------RILSLLDRLIFLSNGQA 320 (737)
Q Consensus 271 -g---LD~-~~~~~i~~~L~~l~~~-g~tvi~~~H~~~-~--------------------~i~~~~D~v~lL~~G~i 320 (737)
+ +|. .....+++.|++++++ |.|||+++|+.. . .+...||+|++|++|+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6678899999999865 999999999951 2 47789999999998874
No 82
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.81 E-value=8.6e-20 Score=197.88 Aligned_cols=77 Identities=27% Similarity=0.387 Sum_probs=69.6
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 238 QHRGVSGGERR------RVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 238 ~~~~LSGGqrq------RvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||++||++. +.+.||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCE
Confidence 35679999999 677788888899999999999999999999999999999877899999999953 6889999
Q ss_pred EEEec
Q 036088 312 LIFLS 316 (737)
Q Consensus 312 v~lL~ 316 (737)
+++|+
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 83
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=1.8e-20 Score=224.75 Aligned_cols=163 Identities=23% Similarity=0.333 Sum_probs=124.4
Q ss_pred HHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCC-Cc--H--HHHHHHHH
Q 036088 144 LMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRS-LS--K--EKKRKRVD 218 (737)
Q Consensus 144 LL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~--~--~~~~~~v~ 218 (737)
...|..+++.+ ..|+|+++|+++.. +..+||.|++.|...+..... .. . ....++..
T Consensus 384 C~~C~g~rl~~--~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (916)
T 3pih_A 384 CSVCGGRRLNR--EALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL 445 (916)
T ss_dssp CTTTCSCCBCT--TGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH
T ss_pred chhcccccCCh--HhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH
Confidence 34455555553 48999999998742 233688888877544332211 00 0 11123445
Q ss_pred HHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEE
Q 036088 219 ALIDQLGLRSA-AMTIIGDEQHRGVSGGERRRVSIGVDIIHDPI--LLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVI 295 (737)
Q Consensus 219 ~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~--illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi 295 (737)
+.|..+||... .++.+ .+|||||||||+||++|+.+|+ +|||||||+|||+.....+++.|++++++|.|||
T Consensus 446 ~~L~~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tvi 520 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVI 520 (916)
T ss_dssp HHHHTTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 67888999754 44444 4699999999999999999887 9999999999999999999999999988899999
Q ss_pred EEecCCcHHHHhhcceEEEe------cCCEEEeeCChhhHHH
Q 036088 296 MSIHQPSHRILSLLDRLIFL------SNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 296 ~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 331 (737)
+++|++. +.+.||+|++| ++|++++.|+++++..
T Consensus 521 vVtHd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 521 VVEHDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp EECCCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EEeCCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9999974 35679999999 8999999999998753
No 84
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.81 E-value=4.9e-20 Score=210.84 Aligned_cols=77 Identities=23% Similarity=0.306 Sum_probs=71.0
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe
Q 036088 239 HRGV-SGGERRRVSIGVDIIHDP--ILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL 315 (737)
Q Consensus 239 ~~~L-SGGqrqRvsiA~aL~~~p--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 315 (737)
...| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||++||++. +...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4557 999999999999999999 99999999999999999999999999987 899999999975 45689999999
Q ss_pred cCC
Q 036088 316 SNG 318 (737)
Q Consensus 316 ~~G 318 (737)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 665
No 85
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.81 E-value=4e-23 Score=221.42 Aligned_cols=160 Identities=9% Similarity=0.060 Sum_probs=115.9
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcC
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRL 204 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~ 204 (737)
+++|+++||+||||||||||+++|+|++++. .|. +.++||+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--DHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--TTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--CCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 7899999999999999999999999998643 342 347999999999998 99999865321
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 036088 205 PRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVL 284 (737)
Q Consensus 205 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L 284 (737)
.+.+.....+++.++|+.++ ....+..+ ..|||||+||+++|++++.+|+|||||||++.+|+..
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-------- 211 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-------- 211 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------
Confidence 12233334567788888887 44333444 3699999999999999999999999999999998621
Q ss_pred HHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 285 KQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 285 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
..+.+.--.+|++.|+.......+.+|.+.+.+|+
T Consensus 212 ~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 212 LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 11222212345566665544455666666665554
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.79 E-value=4.4e-21 Score=198.35 Aligned_cols=176 Identities=10% Similarity=0.100 Sum_probs=110.2
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
.+.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCHh
Confidence 567999999999999999999999999999999999974 333333 2456689999985 77789999
Q ss_pred HHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 036088 194 ETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLD 273 (737)
Q Consensus 194 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD 273 (737)
|++.+...... ...+.....+.+.+.++.+ .+..+..+ ..+|+||+||+.+ ++++.+|++++||||....|
T Consensus 77 ~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYN-FDHPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCC-TTSGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCC-CCCcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 99987543211 0111111123445555544 33333333 4699999999988 58888999999999988887
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHh-hcceEEEecCCEEEeeCChhhHHH
Q 036088 274 STSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILS-LLDRLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 274 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~-~~D~v~lL~~G~iv~~G~~~~~~~ 331 (737)
.. +.++ .+.+|++++|+.. ++.+ +++++ ++|+ +.+++.+
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHH
Confidence 64 2222 3789999999843 3433 44444 5664 4555544
No 87
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.79 E-value=3.1e-21 Score=209.48 Aligned_cols=192 Identities=16% Similarity=0.186 Sum_probs=137.7
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.++.+++++.|.. +..+|+++ +.+.+||+++|+||||||||||+++|+|..+++ .|.|
T Consensus 45 ~i~~~~l~~~~~t-------------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i 102 (347)
T 2obl_A 45 PLLRQVIDQPFIL-------------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVL 102 (347)
T ss_dssp STTCCCCCSEECC-------------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEE
T ss_pred CeeecccceecCC-------------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEE
Confidence 5677778777752 24699999 999999999999999999999999999998754 8999
Q ss_pred EECCEeCCc----------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCccccc
Q 036088 162 TLNGEVLGS----------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAM 231 (737)
Q Consensus 162 ~~~G~~~~~----------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 231 (737)
.+.|++... ..+++.+.+++|.+. +..+.+.-... ...+.+.....+ .+...
T Consensus 103 ~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~ 164 (347)
T 2obl_A 103 ALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLL 164 (347)
T ss_dssp EEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEE
T ss_pred EEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHH
Confidence 999875211 113345677887542 23332221100 001111111111 11100
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCc-----EEEEEecCCcHH
Q 036088 232 TIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK--SGS-----IVIMSIHQPSHR 304 (737)
Q Consensus 232 ~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~ 304 (737)
.+ +.+..||+|| ||+++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||.+
T Consensus 165 -~l--d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 165 -MM--DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp -EE--ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred -HH--hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 00 1234699999 899999 688887 999999999999999999974 477 8999999987
Q ss_pred HHhhcceEEEecCCEEEeeCChhhH
Q 036088 305 ILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 305 i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
..+||++++|.+|+++.+|+.++.
T Consensus 230 -~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 -DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -ChhhhheEEeeCcEEEEeCCHHHc
Confidence 467999999999999999887765
No 88
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.78 E-value=3.9e-20 Score=225.30 Aligned_cols=175 Identities=17% Similarity=0.155 Sum_probs=121.3
Q ss_pred ceEEEEe-----EEEEEecCcccCCCCCccCccccccccccceeeeeEEEec-------CcEEEEEcCCCCcHHHHHHHH
Q 036088 81 LLLSFNN-----LSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASE-------GEITAILGASGSSKTTLMDAI 148 (737)
Q Consensus 81 ~~l~~~n-----ls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aI~GpsGaGKSTLL~~L 148 (737)
.+|+++| |++.|.. .+.+++|+++.+++ |++++|+||||||||||||+|
T Consensus 749 ~~l~i~~~rHP~l~~~~~~-------------------~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG-------------------DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEEECCCC------C-------------------CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEeccccEEEEEecC-------------------CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH
Confidence 3699999 8877731 25699999999987 999999999999999999999
Q ss_pred HcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcc
Q 036088 149 AGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRS 228 (737)
Q Consensus 149 ~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 228 (737)
|++.. .++..+||||+.. .+||.|+|.. + +|+.+
T Consensus 810 -Gl~~~------------------~aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d 843 (1022)
T 2o8b_B 810 -GLLAV------------------MAQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASD 843 (1022)
T ss_dssp -HHHHH------------------HHTTTCCEESSEE---EECCCSBEEE----E--------------------CC---
T ss_pred -HHHHH------------------HhheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHH
Confidence 98641 1222249999763 4566555421 1 12211
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH-HHHHHHHHHHHHc-CcEEEEEecCCcHHHH
Q 036088 229 AAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSA-FNVVKVLKQIAKS-GSIVIMSIHQPSHRIL 306 (737)
Q Consensus 229 ~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~-~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 306 (737)
.... ....+|+|+++ +++|++++++|+++||||||+|+|+... ..+++.|+.++++ |.++|++||++. .+.
T Consensus 844 ~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~ 916 (1022)
T 2o8b_B 844 RIMS-----GESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVE 916 (1022)
T ss_dssp -----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHH
T ss_pred HHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHH
Confidence 1111 12346776664 9999999999999999999999999985 5578999999876 899999999975 466
Q ss_pred hhcceEEEecCCEEE--eeCChhh
Q 036088 307 SLLDRLIFLSNGQAV--CSEAPSN 328 (737)
Q Consensus 307 ~~~D~v~lL~~G~iv--~~G~~~~ 328 (737)
..+|++.++ +|++. +.|++++
T Consensus 917 ~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 917 DYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp HTSSCSSEE-EEEEEEC-------
T ss_pred HhCCcceee-cCeEEEEEecCccc
Confidence 789999887 58887 4555443
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.77 E-value=6.3e-22 Score=226.91 Aligned_cols=170 Identities=15% Similarity=0.100 Sum_probs=119.3
Q ss_pred cccceeeeeE-EEecCcEEEEEcCCCCcHHHHHHH--HHcCCCCCCcceEEEECCEeCCcc--cccceEEEEecCCCCCC
Q 036088 114 TKLLLDDISG-VASEGEITAILGASGSSKTTLMDA--IAGRISKQRLKGTVTLNGEVLGSK--LLKIISAYVMQDDLLYS 188 (737)
Q Consensus 114 ~~~iL~~vs~-~i~~Ge~~aI~GpsGaGKSTLL~~--L~G~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yV~Q~~~l~~ 188 (737)
..++|++|++ .+++|++++|+||||||||||+++ ++|+.+++ +|.|+++|++.... ..++.+||++|+....+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 4669999999 999999999999999999999999 78997644 79999999874221 22345689999754221
Q ss_pred CCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 036088 189 MLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEP 268 (737)
Q Consensus 189 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEP 268 (737)
+ +.+ .... . . +...++++.++|.+..+..+ +.|||| +|++++||||
T Consensus 102 ~------l~~---~~~~-~-~-----~~~~~~l~~~~l~~~~~~~~-----~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 K------LFI---LDAS-P-D-----PEGQEVVGGFDLSALIERIN-----YAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp S------EEE---EECC-C-C-----SSCCSCCSSHHHHHHHHHHH-----HHHHHH-------------TCSEEEEECS
T ss_pred c------EEE---EecC-c-c-----cchhhhhcccCHHHHHHHHH-----HHHHHc-------------CCCEEEECCH
Confidence 1 110 0000 0 0 00111222233333222222 135555 5789999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHH--------HHhhcceEEEecCCE
Q 036088 269 IS-----GLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHR--------ILSLLDRLIFLSNGQ 319 (737)
Q Consensus 269 Ts-----gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~--------i~~~~D~v~lL~~G~ 319 (737)
|+ +||+..+..+.++++++++.|.|||+++|++... +..+||+|++|++|+
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 98 5699999999999999988899999999998742 234599999999843
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.76 E-value=4.1e-19 Score=203.53 Aligned_cols=156 Identities=12% Similarity=0.133 Sum_probs=118.6
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhh
Q 036088 122 SGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAE 201 (737)
Q Consensus 122 s~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~ 201 (737)
++.+++|++++|+||||||||||++.++|...+ .|+ +.+.|++|++. .++.++.. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---~ 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---S 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH---T
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH---H
Confidence 458999999999999999999999999998653 243 12456676541 12333221 1
Q ss_pred hcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH-----H
Q 036088 202 FRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDST-----S 276 (737)
Q Consensus 202 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~-----~ 276 (737)
+ ... +++ +...|+....+. .+..|||||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 331 ~----g~~-------~~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 331 W----GMD-------FEE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp T----SCC-------HHH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred c----CCC-------HHH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 1 122 112 234566554433 34579999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHHcCcEEEEEecCCc---------HHHHhhcceEEEecCCE
Q 036088 277 AFNVVKVLKQIAKSGSIVIMSIHQPS---------HRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 277 ~~~i~~~L~~l~~~g~tvi~~~H~~~---------~~i~~~~D~v~lL~~G~ 319 (737)
+..+.++++.+++.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999999888999999999971 23567899999999886
No 91
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.76 E-value=2.2e-18 Score=205.60 Aligned_cols=136 Identities=24% Similarity=0.438 Sum_probs=110.5
Q ss_pred CCCCCHHHHHHHhhhhcCCCC---CcH---HHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 036088 187 YSMLTIEETLMFSAEFRLPRS---LSK---EKKRKRVDALIDQLGLRSA-AMTIIGDEQHRGVSGGERRRVSIGVDIIHD 259 (737)
Q Consensus 187 ~~~lTV~e~l~~~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~ 259 (737)
+..+||.|++.|...+.++.. +.. ++..+++ +.|+.+||... .++.++ +|||||||||.||++|..+
T Consensus 449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~ 522 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSR 522 (972)
T ss_dssp HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhC
Confidence 345899999999766543210 000 2334555 46899999754 455544 6999999999999999998
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe------cCCEEEeeCChhhHH
Q 036088 260 P--ILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL------SNGQAVCSEAPSNLS 330 (737)
Q Consensus 260 p--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 330 (737)
| ++|+|||||+|||+.....+++.|++|.+.|.|||+++|++. ..+.||+|++| ++|++++.|+++++.
T Consensus 523 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 523 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 5 999999999999999999999999999888999999999974 35689999999 789999999998764
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.76 E-value=9.6e-19 Score=210.73 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=112.8
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCCcceEEEECCEeCCcccccceEEEEecCCC
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAI--------AGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDL 185 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L--------~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~ 185 (737)
.+.+++|+++.+.+|++++|+||||||||||||++ .|...|. ++.. ++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa--~~~~---------------~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC--ESAE---------------VSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE--EEEE---------------EECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc--cccc---------------chHH---HH
Confidence 46799999999999999999999999999999999 3432211 1100 0100 00
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCcEE
Q 036088 186 LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDI--IHDPILL 263 (737)
Q Consensus 186 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL--~~~p~il 263 (737)
++..+|+.+ ...+++|+|++++..+|++| +++|+++
T Consensus 708 ----------------------------------i~~~ig~~d--------~l~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 ----------------------------------ILARVGAGD--------SQLKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ----------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ----------------------------------HHHhcCchh--------hHHHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 111122211 11235889998888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhH
Q 036088 264 FLDEPISGLDSTSAFNV-VKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNL 329 (737)
Q Consensus 264 lLDEPTsgLD~~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 329 (737)
||||||+|||+.....+ ..+++.+++ .|.++|++||+.. +.+++|++..+.+|++.+.++.+++
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcE
Confidence 99999999999999888 677788876 4899999999954 6789999999999999988877665
No 93
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.75 E-value=1.1e-18 Score=207.77 Aligned_cols=179 Identities=19% Similarity=0.237 Sum_probs=127.5
Q ss_pred CCCCcHHHHHHHHHcCCCC-------CCcceEEEECCEeCCcc---cccceEEEEecCC---CCCC----CCCHHHHHHH
Q 036088 136 ASGSSKTTLMDAIAGRISK-------QRLKGTVTLNGEVLGSK---LLKIISAYVMQDD---LLYS----MLTIEETLMF 198 (737)
Q Consensus 136 psGaGKSTLL~~L~G~~~~-------~~~~G~I~~~G~~~~~~---~~~~~~~yV~Q~~---~l~~----~lTV~e~l~~ 198 (737)
.|..||++|.+.+....-| .+..|+|.++|+++.+. ......+++.|.+ .... .++- ++...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 348 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIA 348 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHH
Confidence 3556899999988774222 13478899999887541 1222223332211 0000 0000 01111
Q ss_pred hhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHH
Q 036088 199 SAEFRLPRSLSKEKKRKRVDALIDQLGLRSA-AMTIIGDEQHRGVSGGERRRVSIGVDIIHDP--ILLFLDEPISGLDST 275 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p--~illLDEPTsgLD~~ 275 (737)
+..+ ..+..++++ .++.+||... .++.+ ..|||||||||.||++|..+| .+|+|||||+|||+.
T Consensus 349 ~~~i-------~~ei~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~ 415 (842)
T 2vf7_A 349 LQRM-------AADLVKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPA 415 (842)
T ss_dssp HHHH-------HHHHHHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGG
T ss_pred HHHH-------HHHHHHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHH
Confidence 1000 234456666 6889999854 45544 469999999999999999999 599999999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe------cCCEEEeeCChhhHH
Q 036088 276 SAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL------SNGQAVCSEAPSNLS 330 (737)
Q Consensus 276 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 330 (737)
....++++|++|.+.|.|||+++|++. +.+.||+|++| ++|++++.|+++++.
T Consensus 416 ~~~~L~~~l~~L~~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 416 DTEALLSALENLKRGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp GHHHHHHHHHHHHTTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 999999999999888999999999974 56789999999 789999999998763
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.75 E-value=3.5e-18 Score=204.48 Aligned_cols=138 Identities=22% Similarity=0.327 Sum_probs=110.6
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCc------HHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 036088 186 LYSMLTIEETLMFSAEFRLPRSLS------KEKKRKRVDALIDQLGLRSA-AMTIIGDEQHRGVSGGERRRVSIGVDIIH 258 (737)
Q Consensus 186 l~~~lTV~e~l~~~~~~~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRvsiA~aL~~ 258 (737)
-+..+||.|++.|...+.++.... .++..+++ +.|+.+||... .++.+ .+|||||||||.||++|..
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~-----~tLSGGEkQRV~LA~aL~~ 538 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAA-----ATLSGGEAQRIRLATQIGS 538 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBG-----GGCCHHHHHHHHHHHHHTT
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCc-----ccCCHHHHHHHHHHHHHhh
Confidence 355689999999955443221000 02334555 45788999754 45544 4699999999999999999
Q ss_pred C--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEe------cCCEEEeeCChhhHH
Q 036088 259 D--PILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFL------SNGQAVCSEAPSNLS 330 (737)
Q Consensus 259 ~--p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 330 (737)
+ |++|+|||||+|||+.....+++.|++|.+.|.|||+++|++. ..+.||+|++| ++|++++.|+++++.
T Consensus 539 ~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 539 GLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp CCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred CCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH--HHHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 9 5899999999999999999999999999988999999999974 35689999999 689999999998875
Q ss_pred H
Q 036088 331 Q 331 (737)
Q Consensus 331 ~ 331 (737)
+
T Consensus 617 ~ 617 (993)
T 2ygr_A 617 R 617 (993)
T ss_dssp H
T ss_pred h
Confidence 4
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.74 E-value=9.2e-20 Score=187.23 Aligned_cols=162 Identities=14% Similarity=0.050 Sum_probs=103.9
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHH--cCCCCCCcceEEEECCEeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHh
Q 036088 124 VASEGEITAILGASGSSKTTLMDAIA--GRISKQRLKGTVTLNGEVLGSK--LLKIISAYVMQDDLLYSMLTIEETLMFS 199 (737)
Q Consensus 124 ~i~~Ge~~aI~GpsGaGKSTLL~~L~--G~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yV~Q~~~l~~~lTV~e~l~~~ 199 (737)
.+++|++++|+||||||||||+++|+ |...++ .|.+.+++...... ...+.++|++|+....+.+++.++....
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSV 103 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccc
Confidence 78999999999999999999999999 663322 57777777543221 1123356777765444444544433221
Q ss_pred hhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC-----H
Q 036088 200 AEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLD-----S 274 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD-----~ 274 (737)
... ........+ ...+-++..+...+..-..+|+++++||||++|| +
T Consensus 104 ~~~----------~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~ 155 (251)
T 2ehv_A 104 VGL----------PSEEKFVLE------------------DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEER 155 (251)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGG
T ss_pred ccc----------ccccceecc------------------CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHH
Confidence 100 000000000 0123444444444444468999999999999997 6
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEecCCcHHH---------Hhhc-ceEEEec
Q 036088 275 TSAFNVVKVLKQIAKSGSIVIMSIHQPSHRI---------LSLL-DRLIFLS 316 (737)
Q Consensus 275 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i---------~~~~-D~v~lL~ 316 (737)
..+..+.++++.+++.|+|||+++|+... + ..+| |++++|+
T Consensus 156 ~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 156 KIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEe
Confidence 66667999999998889999999999864 4 5788 9999995
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.74 E-value=4.2e-19 Score=185.47 Aligned_cols=133 Identities=15% Similarity=0.248 Sum_probs=99.5
Q ss_pred cceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHH
Q 036088 116 LLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEET 195 (737)
Q Consensus 116 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~ 195 (737)
++|+++| +++|++++|+||||||||||+++|+|++++. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~~~-~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYV-FKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCCSC-CCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcceee-cCCcceeeeHH------------
Confidence 4899999 9999999999999999999999999997632 179999998775311 11111122220
Q ss_pred HHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 036088 196 LMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDST 275 (737)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~ 275 (737)
.+|+.. ..+ |++||++|..+|++|++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 123221 123 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 276 SAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 276 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
+...++ +. ++.|.+|++++|+.+ +.+.+||++.|..
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 865543 33 356999999999976 5788999988864
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.73 E-value=3.1e-19 Score=180.98 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=98.3
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-----cceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHH
Q 036088 123 GVASEGEITAILGASGSSKTTLMDAIAGRISKQR-----LKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLM 197 (737)
Q Consensus 123 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~-----~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~ 197 (737)
+-+++|++++|+||||||||||+++|+|...+.+ ..|.|++++.+... .+.+++++|+..+++. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 4699999999999999999999999999654422 23467776654211 1123344554444333 4444433
Q ss_pred HhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH-HHHHHHHHHHHhh-------CCcEEEEeCCC
Q 036088 198 FSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGG-ERRRVSIGVDIIH-------DPILLFLDEPI 269 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG-qrqRvsiA~aL~~-------~p~illLDEPT 269 (737)
+.. ..+++ +++++..+.+++. +|+++++||||
T Consensus 96 ~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VAR----------------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EEE----------------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EEe----------------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 211 12222 2233444555544 89999999999
Q ss_pred CCCCHHH------------HHHHHHHHHHHHHc-CcEEEEEecCCc---HHHHhhcceEEEecCCE
Q 036088 270 SGLDSTS------------AFNVVKVLKQIAKS-GSIVIMSIHQPS---HRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 270 sgLD~~~------------~~~i~~~L~~l~~~-g~tvi~~~H~~~---~~i~~~~D~v~lL~~G~ 319 (737)
+++|+.. ..++++.|++++++ |.|||+++|... ..+...+|++++|++|+
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9999842 23788888888754 999999999533 13677899999998753
No 98
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.72 E-value=8.2e-18 Score=160.69 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=72.8
Q ss_pred CCCCCCCHHHHHHHHHH------HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 237 EQHRGVSGGERRRVSIG------VDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 237 ~~~~~LSGGqrqRvsiA------~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
..+..||||||||++|| ++|+.+|++++|||||+|||+.+...+.+.|+++.++|+|||++||++. +.+.||
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~d 130 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAAD 130 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCS
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhCC
Confidence 44568999999999876 8999999999999999999999999999999999777999999999973 678999
Q ss_pred eEEEe--cCCE
Q 036088 311 RLIFL--SNGQ 319 (737)
Q Consensus 311 ~v~lL--~~G~ 319 (737)
++++| .+|.
T Consensus 131 ~ii~l~~~~g~ 141 (148)
T 1f2t_B 131 HVIRISLENGS 141 (148)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEcCCCe
Confidence 99999 4564
No 99
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.71 E-value=6.2e-20 Score=195.78 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=86.1
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC-CCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCH
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGR-ISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTI 192 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~-~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV 192 (737)
++.++++++|+| +|+||||+|||||++.|+|. ..+ .+| |.++|.++......+.+++++|++.+...+||
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~--~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP--ERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC--CCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 356999999998 99999999999999999997 543 378 88888876542223456899999888888999
Q ss_pred HHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-C
Q 036088 193 EETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPIS-G 271 (737)
Q Consensus 193 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTs-g 271 (737)
.|+..++..... .+..+..++.+. +..+..+ +++|||||||+.+||+++ ++++||||+ |
T Consensus 81 ~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAINC-----RDCFKTIISYID------EQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHHH------HHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 999887543210 000011122221 1122333 369999999999988875 999999998 5
Q ss_pred CCHHHHHHHHHHHHHHHHc-CcEEEEEecCCc
Q 036088 272 LDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPS 302 (737)
Q Consensus 272 LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~ 302 (737)
||+... +.++++.++ +.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999863 566666543 778889999964
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.71 E-value=1.3e-20 Score=189.46 Aligned_cols=146 Identities=18% Similarity=0.130 Sum_probs=114.6
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCC--CCCCHHHHHHHhhhh
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLY--SMLTIEETLMFSAEF 202 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~--~~lTV~e~l~~~~~~ 202 (737)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNYD- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT-
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCCC-
Confidence 468999999999999999999999998531 368999998876 56899998765421
Q ss_pred cCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH----HHHHHHHHHHhhCCcEEEEeCCCCC-------
Q 036088 203 RLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGE----RRRVSIGVDIIHDPILLFLDEPISG------- 271 (737)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGq----rqRvsiA~aL~~~p~illLDEPTsg------- 271 (737)
. +.....+++.+.++.+++.+..+.. ...+|+|| +||+++|++++.+|+++++||||++
T Consensus 61 -~----~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 61 -H----PDAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp -S----GGGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred -C----hhhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1 1112235677788888877655443 33589886 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HHcCcEEEEEecCCc
Q 036088 272 LDSTSAFNVVKVLKQI-AKSGSIVIMSIHQPS 302 (737)
Q Consensus 272 LD~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~ 302 (737)
||+.....+.+.+++. .+.|+|++.++|+..
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999886 456899999999843
No 101
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.70 E-value=4.7e-17 Score=181.87 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 241 GVSGGERRRVSIGVDII----HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 241 ~LSGGqrqRvsiA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
.||||||||++||++|+ .+|+++||||||++||+.....+.+.|+++.+++.++|++||++ ...+.||+++.|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 49999999999999999 58999999999999999999999999999876688999999995 3678999999985
No 102
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.70 E-value=2.3e-19 Score=208.72 Aligned_cols=195 Identities=15% Similarity=0.172 Sum_probs=119.2
Q ss_pred CceEEEEeEEEEEecCcccCCCCCccCccccccccccceeee----------eEEEecCcEEEEEcCCCCcHHHHHHHHH
Q 036088 80 PLLLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDI----------SGVASEGEITAILGASGSSKTTLMDAIA 149 (737)
Q Consensus 80 ~~~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aI~GpsGaGKSTLL~~L~ 149 (737)
|..++++||++.|.... +++|+.+ +++++. +||+|||||||||||++|+
T Consensus 8 ~~~i~~~~l~~~~~~~~------------------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~ 66 (608)
T 3szr_A 8 PGSVAENNLCSQYEEKV------------------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALS 66 (608)
T ss_dssp ------------CHHHH------------------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHH
T ss_pred CchhhhhhhhHHHHHHH------------------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHh
Confidence 34688999999986321 2233322 344544 9999999999999999999
Q ss_pred cCCCCCCcceEEEECCEeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHH
Q 036088 150 GRISKQRLKGTVTLNGEVLGS------KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQ 223 (737)
Q Consensus 150 G~~~~~~~~G~I~~~G~~~~~------~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~ 223 (737)
|+..| ..+|.|+++|.++.. ..+++.++|++|+..+++.+||+||+.++....... .
T Consensus 67 Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~----------------~ 129 (608)
T 3szr_A 67 GVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE----------------G 129 (608)
T ss_dssp SCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS----------------S
T ss_pred CCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC----------------c
Confidence 99754 148999999998521 245677899999999999999999998754321000 0
Q ss_pred cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHHc--CcEEE
Q 036088 224 LGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEP------ISGLDSTSAFNVVKVLKQIAKS--GSIVI 295 (737)
Q Consensus 224 lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEP------TsgLD~~~~~~i~~~L~~l~~~--g~tvi 295 (737)
-++ | ++++.++.+...+|+++++||| |+|||+....++.++++++.++ +.+++
T Consensus 130 ~~~----------------s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~ 190 (608)
T 3szr_A 130 MGI----------------S---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLV 190 (608)
T ss_dssp SCC----------------C---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEE
T ss_pred ccc----------------c---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceE
Confidence 011 1 1112222233458999999999 9999999999999999997543 56788
Q ss_pred EEecCCc------HHHHhhc-----ceEEEecCCEEEeeCChhhHHH
Q 036088 296 MSIHQPS------HRILSLL-----DRLIFLSNGQAVCSEAPSNLSQ 331 (737)
Q Consensus 296 ~~~H~~~------~~i~~~~-----D~v~lL~~G~iv~~G~~~~~~~ 331 (737)
+++|+.. ..+.+.. ..|+++.++.++..|+.+++.+
T Consensus 191 vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 191 VVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred EEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 8999865 1222222 4578899998888887655433
No 103
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.70 E-value=3.4e-18 Score=202.52 Aligned_cols=147 Identities=19% Similarity=0.185 Sum_probs=106.3
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
.+.+++|+|++ |++++|+||||||||||||+|+|+... +..|.+. .. .+..+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v------pa--~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV------PA--EEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB------SS--SEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee------eh--hccceeeHHH---hhccCCHH
Confidence 46799999999 999999999999999999999998531 1245432 11 1334677766 55666666
Q ss_pred HHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCcEEEEeCC---
Q 036088 194 ETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDI--IHDPILLFLDEP--- 268 (737)
Q Consensus 194 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL--~~~p~illLDEP--- 268 (737)
||+.. ++|+|+++++.+++++ +++|+++|||||
T Consensus 630 d~l~~------------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLAG------------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHHh------------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 65421 3789999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeC
Q 036088 269 ISGLDSTSA-FNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSE 324 (737)
Q Consensus 269 TsgLD~~~~-~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 324 (737)
|++||..+. ..+++.|++ .|.|+|++||+.. ..+++ .-.+.++++....
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~~ 717 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAARE 717 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEEC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEEE
Confidence 999998875 568887766 5899999999954 45555 2223345554443
No 104
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.69 E-value=2.4e-17 Score=198.06 Aligned_cols=155 Identities=12% Similarity=0.144 Sum_probs=104.9
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
.+.|++|||+++++|++++|+||||||||||||++++..... ..| ..+... . +.+..-+.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~g------~~vpa~--~---~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QIG------SYVPAE--E---ATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HHT------CCBSSS--E---EEEECCSEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hcC------ccccch--h---hhhhHHHHHHHhCChH
Confidence 467999999999999999999999999999999998652110 011 000000 0 1111112222222221
Q ss_pred HHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 036088 194 ETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLD 273 (737)
Q Consensus 194 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD 273 (737)
+++ . ...+.+|+|++|++.|+++ +++|+++||||||+|||
T Consensus 727 d~l----------------------------------~-----~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------Y-----KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------H-----HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 1 1123589999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEE-ecCCEEEe
Q 036088 274 STSAFNVV-KVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIF-LSNGQAVC 322 (737)
Q Consensus 274 ~~~~~~i~-~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~l-L~~G~iv~ 322 (737)
+.....+. .+++.+++ .|.|+|++||++. +.+++|+.-- +.++++.+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 99999987 77888875 5999999999964 5677776531 33444443
No 105
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.69 E-value=1.8e-18 Score=184.53 Aligned_cols=149 Identities=12% Similarity=0.088 Sum_probs=108.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCccc-------c--cceEEEEecCCCCCCCCCHHHHHH
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKL-------L--KIISAYVMQDDLLYSMLTIEETLM 197 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~-------~--~~~~~yV~Q~~~l~~~lTV~e~l~ 197 (737)
+|++++|+||||||||||+++|+|++++. +|+|.++|.++.... + +..++||+|+..++|.+||+|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 79999999999999999999999998754 899999999874311 1 234799999999999899999998
Q ss_pred HhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 036088 198 FSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSA 277 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~ 277 (737)
++..... -..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~~------------d~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARGY------------DLLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHTC------------SEEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCCC------------CEEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 7532100 0012233343322221 2455669999999999999994444 4555555
Q ss_pred HHHHHHHHHHHHc-CcEEEEEecCCc
Q 036088 278 FNVVKVLKQIAKS-GSIVIMSIHQPS 302 (737)
Q Consensus 278 ~~i~~~L~~l~~~-g~tvi~~~H~~~ 302 (737)
..+++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 5677777777654 899999999854
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.68 E-value=2.3e-18 Score=187.33 Aligned_cols=166 Identities=19% Similarity=0.144 Sum_probs=107.0
Q ss_pred ceeee-eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcc----eE-EEECCEeCCcccccceEEEEecCCCCCCCC
Q 036088 117 LLDDI-SGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLK----GT-VTLNGEVLGSKLLKIISAYVMQDDLLYSML 190 (737)
Q Consensus 117 iL~~v-s~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~----G~-I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~l 190 (737)
.|+++ .+.+++|++++|+||||||||||++.|++.....+.+ |+ |++++++.. .++.+++++|+..+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 45665 5899999999999999999999999999987322223 67 888887541 23345667776655543
Q ss_pred CHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCcEE
Q 036088 191 TIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDII-------HDPILL 263 (737)
Q Consensus 191 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~-------~~p~il 263 (737)
++.||+.+... . -|.+|+|++.++++++ .+|+++
T Consensus 195 ~v~~ni~~~~~------~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVARA------F---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEEC------C---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEec------C---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 55555433210 0 1344555555555555 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCCh
Q 036088 264 FLDEPISGLDSTS------------AFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAP 326 (737)
Q Consensus 264 lLDEPTsgLD~~~------------~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 326 (737)
++||||+++|+.. ..++++.|++++++ |.|||+++|... .....++.......|+++.++..
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecCc
Confidence 9999999999862 45677777887764 899999999865 34444556666677777766553
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.66 E-value=3.4e-19 Score=177.28 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=105.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGS-KLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPR 206 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~ 206 (737)
|++++|+||||||||||+++|+|+++ . +| |.++|.+... ...++.+||++|+. ... ++++ +++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc--
Confidence 78999999999999999999999975 4 79 9999987743 23567789999975 111 1111 11100
Q ss_pred CCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHH-HHHH---HHhhCCcEEEEeC--CCCCCCHHHHHH
Q 036088 207 SLSKEKKRKRVDALIDQLGLRS-AAMTIIGDEQHRGVSGGERRRV-SIGV---DIIHDPILLFLDE--PISGLDSTSAFN 279 (737)
Q Consensus 207 ~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRv-siA~---aL~~~p~illLDE--PTsgLD~~~~~~ 279 (737)
+.++ ..+..+| +....+|+|||+++ ++++ |++.+|++||||| ||..+|...
T Consensus 67 ------------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~--- 124 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF--- 124 (189)
T ss_dssp ------------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH---
T ss_pred ------------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH---
Confidence 1010 0112343 23446999999988 4444 5789999999999 898899865
Q ss_pred HHHHHHHHHHcCcEEEE----EecCCcHHHHhhcceEEEecCCEEEee
Q 036088 280 VVKVLKQIAKSGSIVIM----SIHQPSHRILSLLDRLIFLSNGQAVCS 323 (737)
Q Consensus 280 i~~~L~~l~~~g~tvi~----~~H~~~~~i~~~~D~v~lL~~G~iv~~ 323 (737)
++.|+++.+...++|+ ++|+.+ ..+.|+|..+.+|+++.-
T Consensus 125 -~~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 125 -IQAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp -HHHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEEC
T ss_pred -HHHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEe
Confidence 4445555444555553 238854 357788888888998764
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.66 E-value=1.4e-17 Score=198.23 Aligned_cols=157 Identities=11% Similarity=0.108 Sum_probs=110.5
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
.+.+++|++++ ++|++++|+||||||||||||+|+|..... ..| ..+... +..+++++| ++..+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q~G------~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-YIG------SYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-TTT------CCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-hcC------cccchh--cccceeHHH---HHhhCCHH
Confidence 46799999999 999999999999999999999999974211 012 222111 123455554 55556666
Q ss_pred HHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 036088 194 ETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLD 273 (737)
Q Consensus 194 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD 273 (737)
|++..+ + +.+|+|++ +++.+..++++|+++|||||++|+|
T Consensus 661 d~l~~~--------------------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG--------------------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh--------------------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCC
Confidence 655321 1 12566665 4555556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCC
Q 036088 274 STSAFNV-VKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEA 325 (737)
Q Consensus 274 ~~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 325 (737)
+.....+ .+.++.+.+ .|.++|++||++. +.+++|++..+.+|++.+...
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 9887775 788888887 4999999999975 467899988888888776543
No 109
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.64 E-value=2.7e-17 Score=166.47 Aligned_cols=168 Identities=13% Similarity=0.052 Sum_probs=110.3
Q ss_pred ccceeeeeE-EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccc---eEEEEecCCCCCCCC
Q 036088 115 KLLLDDISG-VASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKI---ISAYVMQDDLLYSML 190 (737)
Q Consensus 115 ~~iL~~vs~-~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~---~~~yV~Q~~~l~~~l 190 (737)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.|.+.+.+........ ..++.+|+.... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 457888885 8999999999999999999999999987643 2466666543332111111 011111110000 00
Q ss_pred CHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCC
Q 036088 191 TIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPI--LLFLDEP 268 (737)
Q Consensus 191 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~--illLDEP 268 (737)
.+ ++.....++ . .. .....|.+|.++...+.....+|+ ++++|||
T Consensus 86 ~~------------------------~~~~~~~~~-~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 86 II------------------------IDALMKEKE-D----QW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp EE------------------------EECCC-----C----TT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred EE------------------------EeccccccC-c----ee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 00 000000000 0 00 012359999998888888888999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHH-cCcEEEEEecCCc-------HHHHhhcceEEEecCC
Q 036088 269 ISGL--DSTSAFNVVKVLKQIAK-SGSIVIMSIHQPS-------HRILSLLDRLIFLSNG 318 (737)
Q Consensus 269 TsgL--D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~-------~~i~~~~D~v~lL~~G 318 (737)
|+++ |+....++++.|+++++ .|.|||+++|+.. ..+.++||+|++|++.
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9887 99999999999999975 4899999999972 2377899999999764
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.64 E-value=5.7e-17 Score=176.53 Aligned_cols=133 Identities=16% Similarity=0.257 Sum_probs=93.2
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHH
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETL 196 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l 196 (737)
+|+++ ...+|++++|+|||||||||||++|+|++++. ..|.|...+.++.. ..+...++++|.......+|.
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~~---- 185 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLGF---- 185 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCH----
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccccCCH----
Confidence 45554 56889999999999999999999999997642 14666554443321 122223455554322211111
Q ss_pred HHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 036088 197 MFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTS 276 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~ 276 (737)
.+ +||++|..+|++|++|||| |.++
T Consensus 186 ------------------------------------------------~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 186 ------------------------------------------------SE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp ------------------------------------------------HH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ------------------------------------------------HH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 11 9999999999999999999 6555
Q ss_pred HHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCC
Q 036088 277 AFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNG 318 (737)
Q Consensus 277 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 318 (737)
++.+.++++.|.+||+|+|+.+. .+.+||++.|..|
T Consensus 211 ----~~~~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~~ 246 (356)
T 3jvv_A 211 ----IRLALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFPA 246 (356)
T ss_dssp ----HHHHHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSCH
T ss_pred ----HHHHHHHHhcCCEEEEEEccChH--HHHHHHHhhhcCc
Confidence 44445556779999999999874 4889999998654
No 111
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.63 E-value=6.4e-16 Score=162.52 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=104.9
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhc
Q 036088 124 VASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFR 203 (737)
Q Consensus 124 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~ 203 (737)
-+++|++++|+||||||||||++.|++... .|++. .|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 478999999999999999999999998643 46553 3544321 2346787766532 01112211 111
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC--CCCHHHH---H
Q 036088 204 LPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPIS--GLDSTSA---F 278 (737)
Q Consensus 204 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTs--gLD~~~~---~ 278 (737)
. ... ....+++++.+++.+..+. .+..||+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 ~--~~~----~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLS----AEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSC----HHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcC----hhhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 111 1335667888887765433 3456999998875 68889999999999999 9998544 8
Q ss_pred HHHHHHHHHHH-cCcEEEEEecCCc
Q 036088 279 NVVKVLKQIAK-SGSIVIMSIHQPS 302 (737)
Q Consensus 279 ~i~~~L~~l~~-~g~tvi~~~H~~~ 302 (737)
++++.|+++++ .|.|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88999999874 5999999999964
No 112
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=4.3e-18 Score=170.10 Aligned_cols=179 Identities=12% Similarity=0.083 Sum_probs=97.6
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC---CCCcc
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRIS---KQRLK 158 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~---~~~~~ 158 (737)
+|+++|+++.|. ..+|++ +.+.+|..++|+|+||||||||++.|+|... ..+..
T Consensus 3 ~l~~~~~~~~~~---------------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~ 59 (210)
T 1pui_A 3 NLNYQQTHFVMS---------------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTP 59 (210)
T ss_dssp --------CEEE---------------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------
T ss_pred chhhhhhhheee---------------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCC
Confidence 478999999995 136777 7789999999999999999999999999861 02335
Q ss_pred eEEEECCEeC-C-cccccceEEEEecCCCCCCCCC---HHHHHHHhhhh-c----------CCCCCcHHHHHHHHHHHHH
Q 036088 159 GTVTLNGEVL-G-SKLLKIISAYVMQDDLLYSMLT---IEETLMFSAEF-R----------LPRSLSKEKKRKRVDALID 222 (737)
Q Consensus 159 G~I~~~G~~~-~-~~~~~~~~~yV~Q~~~l~~~lT---V~e~l~~~~~~-~----------~~~~~~~~~~~~~v~~~l~ 222 (737)
|.+.+.+.-. . ...+....|+..++ .+.-. .+..+...... + ....... ....+.++++
T Consensus 60 G~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~ 134 (210)
T 1pui_A 60 GRTQLINLFEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAV 134 (210)
T ss_dssp ---CCEEEEEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHH
T ss_pred ccceeeEEEEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHH
Confidence 6654422100 0 00000000111000 00000 11112111110 0 0011111 2234556677
Q ss_pred HcCCcccc-cccccCCCCCCCCHHHHHH-HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcE
Q 036088 223 QLGLRSAA-MTIIGDEQHRGVSGGERRR-VSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSI 293 (737)
Q Consensus 223 ~lgL~~~~-~~~vg~~~~~~LSGGqrqR-vsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~t 293 (737)
..++.... .+++ ..+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.|
T Consensus 135 ~~~~~~~~v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 135 DSNIAVLVLLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HTTCCEEEEEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HcCCCeEEEEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 77765431 2333 3589999999 89999999999999999999999999999999999998766644
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.8e-17 Score=183.89 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=97.0
Q ss_pred eEEEEeEEEEEecCcccCCCCCccCccccccccccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE
Q 036088 82 LLSFNNLSYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV 161 (737)
Q Consensus 82 ~l~~~nls~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 161 (737)
.|+++||+++|. .+.+++|+||+| +|+||||||||||+++|+|...+.+..|.+
T Consensus 11 ~l~~~~l~~~y~--------------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~ 64 (418)
T 2qag_C 11 YVGFANLPNQVY--------------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGP 64 (418)
T ss_dssp ----CCCCCCTT--------------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSC
T ss_pred cEEEEecceeEC--------------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCc
Confidence 578888888774 356999999998 999999999999999999997533212322
Q ss_pred EECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 036088 162 TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRG 241 (737)
Q Consensus 162 ~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 241 (737)
.+++.+ ......+++++|++.+++.+||.||+.++.... .......+.+.++. .
T Consensus 65 ~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~~-----------------~ 118 (418)
T 2qag_C 65 SHRIKK---TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYIDS-----------------K 118 (418)
T ss_dssp C--------CCEEEEEECC------CEEEEEEECC-----------------CHHHHHHHHH-----------------H
T ss_pred ccCCcc---ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHHH-----------------H
Confidence 222211 112345789999988888899999998764321 01111112222211 2
Q ss_pred CCHHHHHHHHHHHHHhhCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCcEEEEEecCC
Q 036088 242 VSGGERRRVSIGVDIIHDPI---LLFLDEPI-SGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQP 301 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~---illLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 301 (737)
++.+++||++|||+++.+|+ +|++|||| .|||+... +.++.+.. +.+||+++|..
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 56677889999999999999 99999999 69998863 44455543 67788877764
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.58 E-value=9.9e-17 Score=163.21 Aligned_cols=151 Identities=13% Similarity=0.154 Sum_probs=101.8
Q ss_pred eeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCH----HHHH
Q 036088 121 ISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTI----EETL 196 (737)
Q Consensus 121 vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV----~e~l 196 (737)
-.-..++|++++|+||||||||||+++|+|+.+++...|.|.+.+++.... .++.++|++|++.+|+.+|+ .|++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 344578999999999999999999999999986423689999998776432 24457899998766555444 2322
Q ss_pred HHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 036088 197 MFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTS 276 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~ 276 (737)
.+.... . +.| +++ +.+++..++++||| ||+.+
T Consensus 88 ~~~~~~-------------------------------y------g~~---~~~---v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 88 EVFGNY-------------------------------Y------GTS---REA---IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EETTEE-------------------------------E------EEE---HHH---HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHHhcc-------------------------------C------CCC---HHH---HHHHHhcCCeEEEE-----ECHHH
Confidence 211100 0 111 111 33455567999999 99999
Q ss_pred HHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHHHHHh
Q 036088 277 AFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLSQFFG 334 (737)
Q Consensus 277 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 334 (737)
+.++.+.+. ++.||++++|++.. +.+ |+ +.+| .++++++...+.
T Consensus 120 ~~~i~~~l~----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 120 AQQIRQKMP----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHHHCT----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred HHHHHHHcc----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHHH
Confidence 999999876 58999999999753 333 43 6777 577777765543
No 115
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.54 E-value=7.6e-19 Score=173.64 Aligned_cols=170 Identities=13% Similarity=0.102 Sum_probs=112.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRS 207 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 207 (737)
|++++|+||||||||||+++|++. .+|.+.++|.++... ...++++|.......+|+++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL--- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH---
Confidence 689999999999999999999983 258999998765321 123667776544455688888876532210
Q ss_pred CcHHHHHHHHHHHHHHcCCcccccccccC---CCCCCC--CHHHHHHHHHHH------HHhhCCcEEEEeCCCCCCCHHH
Q 036088 208 LSKEKKRKRVDALIDQLGLRSAAMTIIGD---EQHRGV--SGGERRRVSIGV------DIIHDPILLFLDEPISGLDSTS 276 (737)
Q Consensus 208 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~L--SGGqrqRvsiA~------aL~~~p~illLDEPTsgLD~~~ 276 (737)
. -+.....+...+. ...+.+ |+|++||+.++. +++.+|+...+|+ +||+..
T Consensus 71 --------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 71 --------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp --------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred --------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0 0100011110000 001124 888888888888 8999998888884 899988
Q ss_pred HHHHHHHHHHHHHcCcEEEEEecC-CcHHHHhhcceEEEecCCEEEeeCChhhHH
Q 036088 277 AFNVVKVLKQIAKSGSIVIMSIHQ-PSHRILSLLDRLIFLSNGQAVCSEAPSNLS 330 (737)
Q Consensus 277 ~~~i~~~L~~l~~~g~tvi~~~H~-~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 330 (737)
... .+.++.+.+.+.++|.++|. ++ ++.+.||+|+ ++|+++..|+++.+.
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC-------
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCchh
Confidence 888 88888886667899999998 76 4788999999 999999999887653
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.53 E-value=6.3e-15 Score=148.11 Aligned_cols=155 Identities=17% Similarity=0.106 Sum_probs=100.5
Q ss_pred ccceeeee-EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 115 KLLLDDIS-GVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 115 ~~iL~~vs-~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
.+.|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.+++ ..+.. .+..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~--~~v~~i-----------------~~~~~----~~~~ 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG--KKVAYV-----------------DTEGG----FSPE 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC--SEEEEE-----------------ESSCC----CCHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC--CcEEEE-----------------ECCCC----CCHH
Confidence 34566766 4789999999999999999999999999 211 223333 22221 1111
Q ss_pred HHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH--HHHHHHHHHHHhhC-CcEEEEeCCCC
Q 036088 194 ETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGG--ERRRVSIGVDIIHD-PILLFLDEPIS 270 (737)
Q Consensus 194 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG--qrqRvsiA~aL~~~-p~illLDEPTs 270 (737)
+-....... .... +++++.+.+ . ..|++ +++++..+++++.+ |+++++||||+
T Consensus 61 ~~~~~~~~~----~~~~-------~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 61 RLVQMAETR----GLNP-------EEALSRFIL--------F-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHTT----TCCH-------HHHHHHEEE--------E-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHhc----CCCh-------HHHhhcEEE--------E-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 111110000 1111 122332211 1 24444 36788889999986 99999999999
Q ss_pred CCCHHH--------HHHHHHHHHHHHHc-CcEEEEEecCCc------------HHHHhhcceEEEecCC
Q 036088 271 GLDSTS--------AFNVVKVLKQIAKS-GSIVIMSIHQPS------------HRILSLLDRLIFLSNG 318 (737)
Q Consensus 271 gLD~~~--------~~~i~~~L~~l~~~-g~tvi~~~H~~~------------~~i~~~~D~v~lL~~G 318 (737)
++|+.. ..++++.|++++++ |.|||+++|... ..+...||++++|++.
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 117 HYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 999743 35567778888764 899999999864 1467899999999754
No 117
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.53 E-value=2.2e-14 Score=140.45 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE
Q 036088 239 HRGVSGGERRRVSIGVDIIH----DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF 314 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 314 (737)
...||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|+. .+.+.||+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 45799999999999999974 4699999999999999999999999999875 46899999995 36789999986
Q ss_pred ec--CCE
Q 036088 315 LS--NGQ 319 (737)
Q Consensus 315 L~--~G~ 319 (737)
+. +|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 64 564
No 118
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=3.6e-16 Score=172.96 Aligned_cols=172 Identities=13% Similarity=0.100 Sum_probs=112.9
Q ss_pred ccceeeeeEEEecCcE--EEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC---cccccceEEEEecCCCCCCC
Q 036088 115 KLLLDDISGVASEGEI--TAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLG---SKLLKIISAYVMQDDLLYSM 189 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~--~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---~~~~~~~~~yV~Q~~~l~~~ 189 (737)
.+ |+++|+++++|++ +||+||||||||||+|+|+|..- +|.++. ....++.++|++|++.+++.
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----------~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 96 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----------EGEPATHTQPGVQLQSNTYDLQESNVRLK 96 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-----------------CCSSCEEEEEEEEEEC--CEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----------cCCcCCCCCccceEeeEEEEeecCccccc
Confidence 44 9999999999999 99999999999999999999841 222221 11234468999999988888
Q ss_pred CCHHHHHHHhhhhcCCCCCc--HHHHHHHHHHHHHHc-CCcc----ccccc----cc--CCCCCCCCHHHHHHHHHHHHH
Q 036088 190 LTIEETLMFSAEFRLPRSLS--KEKKRKRVDALIDQL-GLRS----AAMTI----IG--DEQHRGVSGGERRRVSIGVDI 256 (737)
Q Consensus 190 lTV~e~l~~~~~~~~~~~~~--~~~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~~LSGGqrqRvsiA~aL 256 (737)
+||.||+.|+.......... ........++.|+.. ++.. ..|+. +. .+...+|+-.+ +.|+++|
T Consensus 97 ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 97 LTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp EEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred cchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 99999987764211000000 011234555666665 4431 12221 11 11123577766 7899999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCcEEEEEecC
Q 036088 257 IHDPILLFLDEPISGLDSTSAFNVVKVLKQ-IAKSGSIVIMSIHQ 300 (737)
Q Consensus 257 ~~~p~illLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~~~H~ 300 (737)
..+++++++||||..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999999986 77778888887755
No 119
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.51 E-value=9.8e-18 Score=183.44 Aligned_cols=173 Identities=15% Similarity=0.038 Sum_probs=108.2
Q ss_pred ceeeeeEEEec--CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcc----eEEEEC----CEeCC--cccccceEEEEecCC
Q 036088 117 LLDDISGVASE--GEITAILGASGSSKTTLMDAIAGRISKQRLK----GTVTLN----GEVLG--SKLLKIISAYVMQDD 184 (737)
Q Consensus 117 iL~~vs~~i~~--Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~----G~I~~~----G~~~~--~~~~~~~~~yV~Q~~ 184 (737)
+.+.|++.+++ |+.++|+||||||||||+++|+|++++. + |+|.++ |.+.. ...+ +.+++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~--~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT--SAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE--EECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC--cchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 56789999999 9999999999999999999999998743 6 666653 22210 0011 1123333322
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCcEE
Q 036088 185 LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDII-HDPILL 263 (737)
Q Consensus 185 ~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~-~~p~il 263 (737)
.++. .|+.|||.+. + .+..++. ...+|+|++||..+++++. .+|+++
T Consensus 234 ~~~~-~t~~~nl~~~-------------------------~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDYA-VRHSHKIAFI-------------------------D-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHHH-HHHCSSEEEE-------------------------S-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHHH-HhccCCEEEE-------------------------e-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 2111 1222222111 0 0001111 1135677788888888775 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHH-cCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhh
Q 036088 264 FLDE---PI------SGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSN 328 (737)
Q Consensus 264 lLDE---PT------sgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 328 (737)
|||| |+ .++|+..+..+.+.|+++.+ .|.+||+++|. + ...+++|++.++++ ++..+++++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~--~l~~~~~~~ 352 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK--VLNEEEISE 352 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH--HTSCCCCSS
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH--HhcccchhH
Confidence 9999 65 58999999999999999865 38899998876 3 35677887777754 334444444
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.49 E-value=5.3e-17 Score=160.21 Aligned_cols=153 Identities=14% Similarity=0.026 Sum_probs=96.3
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhc
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFR 203 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~ 203 (737)
+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++... ..++.++|++|+.. +.+||.|++.+.+...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~--~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PG--VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SS--SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cC--CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 679999999999999999999999998 33 69999999765321 12234577777644 4568999987654221
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 036088 204 LPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKV 283 (737)
Q Consensus 204 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 283 (737)
..... ...++.+++.+++..... . +..+..+|+|++||+.++|++..+|+++ +|+.....+.+.
T Consensus 80 ~~~~~-----~~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 80 AKEGY-----FVILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHTSC-----EEEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred hccCC-----eEEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 00000 000111111112211110 0 1122359999999999999999999876 688877777777
Q ss_pred HHHHHHcCcEEEEEec
Q 036088 284 LKQIAKSGSIVIMSIH 299 (737)
Q Consensus 284 L~~l~~~g~tvi~~~H 299 (737)
++.+...+..+|.++|
T Consensus 144 ~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 144 FADLGAFEHHVLPVSG 159 (191)
T ss_dssp TTCCGGGGGGEEECTT
T ss_pred HhccCcccccEEECCC
Confidence 7665433333444443
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.49 E-value=4.4e-15 Score=162.82 Aligned_cols=132 Identities=16% Similarity=0.269 Sum_probs=98.9
Q ss_pred cceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHH
Q 036088 116 LLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEET 195 (737)
Q Consensus 116 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~ 195 (737)
.+|++++ +++|++++|+||||||||||+++|+|++++. .+|+|.+.|.++.. ..+..++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~-~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEY-VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCS-CCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhh-hhccCceEEEeee-----------
Confidence 4677776 7899999999999999999999999997632 16999887766542 3445567888841
Q ss_pred HHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 036088 196 LMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDST 275 (737)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~ 275 (737)
+|+.. ..+ +.+|+++|..+|+++++|||| |+.
T Consensus 191 ----------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 22211 124 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEec
Q 036088 276 SAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLS 316 (737)
Q Consensus 276 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 316 (737)
+... .++. +..|.+|+.++|..+ +.+.+||++.|.
T Consensus 223 ~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 5443 3443 346899999999965 678889987764
No 122
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.48 E-value=5.5e-15 Score=161.42 Aligned_cols=139 Identities=15% Similarity=0.078 Sum_probs=101.4
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeC-CcccccceEEEEe-cCCCCCCCCCHHH
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVL-GSKLLKIISAYVM-QDDLLYSMLTIEE 194 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~-~~~~~~~~~~yV~-Q~~~l~~~lTV~e 194 (737)
+++++|+.+++|++++|+||||||||||+++|+|++++. +|.|+++|..- .....++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~--~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD--QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT--SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC--ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 349999999999999999999999999999999998754 89999998532 1122556788998 65432
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDS 274 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~ 274 (737)
+++++..+|..|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222345566666667899999999986
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEE
Q 036088 275 TSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 275 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 320 (737)
.++.+.|+.+.....|++.++|..+ ....+||+..+.+|..
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~~ 304 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQNR 304 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTST
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhccc
Confidence 3456677777554457899999975 5788999999987743
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.47 E-value=1.4e-17 Score=178.93 Aligned_cols=156 Identities=14% Similarity=0.103 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC------CCcceEEEECCEeCCcc------------------cccceEEEE---e
Q 036088 129 EITAILGASGSSKTTLMDAIAGRISK------QRLKGTVTLNGEVLGSK------------------LLKIISAYV---M 181 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~~~------~~~~G~I~~~G~~~~~~------------------~~~~~~~yV---~ 181 (737)
++++|+|+||||||||||.|.|..+. .+..|+|.++|.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999998621 23589999999987532 122335666 6
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCCC---cHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 036088 182 QDDLLYSMLTIEETLMFSAEFRLPRSL---SKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIH 258 (737)
Q Consensus 182 Q~~~l~~~lTV~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~ 258 (737)
|+..+++..+|.||..++........+ +......+++.++..+++.+..+... .+|+|||||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 776666677888877653210000000 00001111222333344444333332 489999999988888888
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCc
Q 036088 259 DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPS 302 (737)
Q Consensus 259 ~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 302 (737)
+|+++ ||| ..+.+.|++++ .+.+|++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 88877 888 67888888875 5889999999864
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.44 E-value=1.2e-16 Score=165.03 Aligned_cols=147 Identities=20% Similarity=0.208 Sum_probs=100.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhh-
Q 036088 127 EGEITAILGASGSSKTTLMDAIA---GRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEF- 202 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~---G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~- 202 (737)
++++++|+||||||||||+++|+ |+..+ ..|+|.++|.+... .....+.+++|+..+++..|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~--~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL--SSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE--EHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 99754 47998887765321 1223345667888888888999999864321
Q ss_pred -----cCCCCCcHHHHHHHHHHHHH--HcC------------CcccccccccCCCCCCCCHHHHHHHHHHHHH-hhCCcE
Q 036088 203 -----RLPRSLSKEKKRKRVDALID--QLG------------LRSAAMTIIGDEQHRGVSGGERRRVSIGVDI-IHDPIL 262 (737)
Q Consensus 203 -----~~~~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL-~~~p~i 262 (737)
... ..+... ..++.+.+ .++ +.... +..+..||| |+ ++| +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~-----~r~~~~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLS-----RRWIHPPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHH-----TEEEETTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHH-----cCCCcCCCC----Cc---cccccCCCcc
Confidence 000 111111 12222221 122 11112 223346898 66 677 999999
Q ss_pred EEEe----CCCCCCCHHHHHHHHHHHHHHHHcC
Q 036088 263 LFLD----EPISGLDSTSAFNVVKVLKQIAKSG 291 (737)
Q Consensus 263 llLD----EPTsgLD~~~~~~i~~~L~~l~~~g 291 (737)
++|| |||+|||..+...+.+.|+++.+++
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999 9999999999999999999987653
No 125
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.43 E-value=4.6e-16 Score=152.19 Aligned_cols=138 Identities=18% Similarity=0.205 Sum_probs=90.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CcceEEEECCEeCCc------cccc-ceEE----EEecCCCCCCCCCHHHHH
Q 036088 129 EITAILGASGSSKTTLMDAIAGRISKQ-RLKGTVTLNGEVLGS------KLLK-IISA----YVMQDDLLYSMLTIEETL 196 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~------~~~~-~~~~----yV~Q~~~l~~~lTV~e~l 196 (737)
++++|+|+||||||||+++|+|++++. ...|.|.++|.++.. ..+| +.+| +++|+..+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999998642 126999999987432 2334 2456 888887665 110
Q ss_pred HHhhhhcCCCCCcHHHHHHHHHHHHHH-cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE-------EEeCC
Q 036088 197 MFSAEFRLPRSLSKEKKRKRVDALIDQ-LGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILL-------FLDEP 268 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~il-------lLDEP 268 (737)
. .. +....++++++. +. ..|+.+++ +||||||||++|||+++.+|++. .=|.|
T Consensus 77 --------~---~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Ch-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 01 112356777776 54 46888886 59999999999999999999873 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHcC
Q 036088 269 ISG---LDSTSAFNVVKVLKQIAKSG 291 (737)
Q Consensus 269 Tsg---LD~~~~~~i~~~L~~l~~~g 291 (737)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 33445667777776666555
No 126
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.42 E-value=6.5e-14 Score=151.92 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=86.9
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCcceEEEEC-CEeCCcccccceEEEEecCCCCCCCCCHHHH
Q 036088 118 LDDISGVASEGEITAILGASGSSKTTLMDAIAGRIS-KQRLKGTVTLN-GEVLGSKLLKIISAYVMQDDLLYSMLTIEET 195 (737)
Q Consensus 118 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~-~~~~~G~I~~~-G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~ 195 (737)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |+.... ..+..+++++|+..++++.||+|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~--~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL--TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC--CC--------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc--cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHHh
Confidence 4555553 4899999999999999999999999976 54 8999987 765432 334567999999999999999984
Q ss_pred HHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 036088 196 LMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDI 256 (737)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL 256 (737)
. + ..++.++..+++.++++.+|+.+..+... .++| ||+||++||+++
T Consensus 282 ---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 ---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp ---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred ---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 1 13455666778889999999987775544 4699 999999999865
No 127
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.41 E-value=6.8e-15 Score=142.03 Aligned_cols=79 Identities=22% Similarity=0.148 Sum_probs=66.7
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
.+.+++++|+++++|++++|+||||||||||+|+|+|.+ +. +|+|.++|.++....... .+++|+..++ .+||.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~--~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH--QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC--CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC--CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 356899999999999999999999999999999999998 54 799999998874321111 2899998888 89999
Q ss_pred HHHHH
Q 036088 194 ETLMF 198 (737)
Q Consensus 194 e~l~~ 198 (737)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 128
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.41 E-value=2.8e-13 Score=138.11 Aligned_cols=152 Identities=17% Similarity=0.259 Sum_probs=86.5
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHc--CCCCC---CcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHH
Q 036088 123 GVASEGEITAILGASGSSKTTLMDAIAG--RISKQ---RLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLM 197 (737)
Q Consensus 123 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G--~~~~~---~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~ 197 (737)
+-+++|++++|+||||||||||++.|++ ..++. ...|.+++++.+.. ...+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------CHHHHHH
Confidence 5689999999999999999999999999 44320 12566777665420 0110000
Q ss_pred HhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH-HHHHHHHh--hCCcEEEEeCCCCCCCH
Q 036088 198 FSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRR-VSIGVDII--HDPILLFLDEPISGLDS 274 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqR-vsiA~aL~--~~p~illLDEPTsgLD~ 274 (737)
....+. ... +++++.+.+ ....+..+..+ +.-+.+++ .+|+++++|||++.+|+
T Consensus 78 ~~~~~g----~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERYG----LSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHcC----CCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 000000 110 012221111 01234444332 33333343 58999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHHc-CcEEEEEecCCcHH------------------HHhhcceEEEecCC
Q 036088 275 T-------S-----AFNVVKVLKQIAKS-GSIVIMSIHQPSHR------------------ILSLLDRLIFLSNG 318 (737)
Q Consensus 275 ~-------~-----~~~i~~~L~~l~~~-g~tvi~~~H~~~~~------------------i~~~~D~v~lL~~G 318 (737)
. . ...+++.|++++++ |.|||+++|..... +...||.+++|++|
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 34567777777654 99999999965421 11278999999865
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.40 E-value=6.8e-15 Score=164.81 Aligned_cols=154 Identities=13% Similarity=0.089 Sum_probs=105.8
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc-------c--ccceEEEEecCCCCCC
Q 036088 118 LDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK-------L--LKIISAYVMQDDLLYS 188 (737)
Q Consensus 118 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~-------~--~~~~~~yV~Q~~~l~~ 188 (737)
-+++|+++++|++++|+||||||||||+++|+|++.+. +|+|.++|.+.... . .++.++|++|+..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc--CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 36899999999999999999999999999999998644 79999988776431 1 2455799999988888
Q ss_pred CCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-hCC-cEEEEe
Q 036088 189 MLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDII-HDP-ILLFLD 266 (737)
Q Consensus 189 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~-~~p-~illLD 266 (737)
.+||++|+.++.... .. .-+++..|+.+.... +-..-+||+.+++++. ..| .+||..
T Consensus 361 ~~tV~e~l~~a~~~~----~D--------vVLIDTaGrl~~~~~---------lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN----ID--------VLIADTAGRLQNKSH---------LMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEECCCCSCCCHHH---------HHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcC----CC--------EEEEeCCCccchhhh---------HHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 889999998874311 00 001222233221111 1122357888888764 456 456555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCcEEEEEecC
Q 036088 267 EPISGLDSTSAFNVVKVLKQIAK-SGSIVIMSIHQ 300 (737)
Q Consensus 267 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~ 300 (737)
++|+|.|.. +.++.+.+ -|.|.|++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 588886554 33455543 47899999994
No 130
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.38 E-value=9e-13 Score=144.36 Aligned_cols=77 Identities=22% Similarity=0.357 Sum_probs=67.8
Q ss_pred CCCCCCHHHHHHH------HHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcc
Q 036088 238 QHRGVSGGERRRV------SIGVDIIHD-PILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLD 310 (737)
Q Consensus 238 ~~~~LSGGqrqRv------siA~aL~~~-p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 310 (737)
.+..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||++||++. +...||
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhCC
Confidence 3457999999988 567888999 999999999999999999999999999753 568999999974 578999
Q ss_pred eEEEecC
Q 036088 311 RLIFLSN 317 (737)
Q Consensus 311 ~v~lL~~ 317 (737)
++++|++
T Consensus 354 ~~~~l~k 360 (371)
T 3auy_A 354 VIINVKK 360 (371)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999974
No 131
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.36 E-value=2.2e-14 Score=151.94 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=90.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhh---h
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAE---F 202 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~---~ 202 (737)
.++.+++|.||||||||||.+.|++++.+ .| . . ++.+.+|+||+.+++. ++++|+.++.. +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 47889999999999999999999999752 22 0 1 3345667999999886 89999988631 1
Q ss_pred cCCCCCcHHHHHHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHH--HHHhhCCcEEEEeCCCCCCCHHH
Q 036088 203 RLPRSLSKEKKRKRVDALIDQLGLRS----AAMTIIGDEQHRGVSGGERRRVSIG--VDIIHDPILLFLDEPISGLDSTS 276 (737)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSGGqrqRvsiA--~aL~~~p~illLDEPTsgLD~~~ 276 (737)
....+.+.....+.+.+.++.+...- .....+. .....+||||+||+++| +++ +|+|||+||||+++|+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 11111122223445667777774330 0111121 23457999999999997 555 999999999999999864
No 132
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.35 E-value=7.4e-14 Score=150.29 Aligned_cols=143 Identities=13% Similarity=0.046 Sum_probs=99.2
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCccc-------ccc--eEEEEecCCCCCCCCCHHHHH
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKL-------LKI--ISAYVMQDDLLYSMLTIEETL 196 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~-------~~~--~~~yV~Q~~~l~~~lTV~e~l 196 (737)
++|++++|+||||||||||++.|+|++.+. +|+|.++|.++.... +++ .+.+++|+..+.|.+||+||+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 689999999999999999999999998754 899999999875321 122 245999999999999999999
Q ss_pred HHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 036088 197 MFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTS 276 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~ 276 (737)
.++...... . .+++..|+.+..+.. .++.-.+++++..++++++||.+| |
T Consensus 205 ~~~~~~~~d----------~--vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t-~----- 254 (328)
T 3e70_C 205 QHAKARGID----------V--VLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALA-G----- 254 (328)
T ss_dssp HHHHHHTCS----------E--EEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGG-T-----
T ss_pred HHHHhccch----------h--hHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHH-H-----
Confidence 876421100 0 012222332211111 122234889999888888888554 4
Q ss_pred HHHHHHHHHHHHH-cCcEEEEEecCC
Q 036088 277 AFNVVKVLKQIAK-SGSIVIMSIHQP 301 (737)
Q Consensus 277 ~~~i~~~L~~l~~-~g~tvi~~~H~~ 301 (737)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 -~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 -NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp -THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 355666677764 488999999964
No 133
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.34 E-value=3.8e-15 Score=161.17 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=108.5
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc-------cccceEEEEecCCCCC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK-------LLKIISAYVMQDDLLY 187 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yV~Q~~~l~ 187 (737)
+.+|+++|+++++|++++|+||||||||||+++|+|++.+. +|+|.+.|.++... ..++.++|++|++.++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~--~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA--GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC--CCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 46999999999999999999999999999999999997644 79999999887432 2355679999998777
Q ss_pred CCC------------CHHHHHHHh-----------------------------hhhcCCCCCcHHH--HHHHHHHHHHHc
Q 036088 188 SML------------TIEETLMFS-----------------------------AEFRLPRSLSKEK--KRKRVDALIDQL 224 (737)
Q Consensus 188 ~~l------------TV~e~l~~~-----------------------------~~~~~~~~~~~~~--~~~~v~~~l~~l 224 (737)
... +++|.+... ..+..+ ...... .++.+.+....+
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~-~~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLP-GAGDELQGIKKGIFELADMI 198 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECS-CC------CCTTHHHHCSEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcC-CCcccHHHHHHHHhccccEE
Confidence 532 123332110 000000 000000 000111111111
Q ss_pred CCcccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 036088 225 GLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIH------DPILLFLDEPISGLDSTSAFNVVKVLKQIAK 289 (737)
Q Consensus 225 gL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~ 289 (737)
.+ +..|. .....+|+|++|++..+++++. +|++++ ||++|.....++++.|.++..
T Consensus 199 vl-NK~Dl----~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 199 AV-NKADD----GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EE-ECCST----TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EE-Echhc----cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 11 11111 1123589999999999999987 688887 999999999999999988754
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.33 E-value=4.3e-13 Score=128.06 Aligned_cols=96 Identities=15% Similarity=0.273 Sum_probs=72.2
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce--EEEECCEeCCcccccceEEEEecCCCCCCCCCH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG--TVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTI 192 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G--~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV 192 (737)
..+|+++ +|+.++|+||||+|||||+++|++...+ +| .+++++.++.. .
T Consensus 28 ~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~~~~~~~~~~~~-----------------~---- 78 (149)
T 2kjq_A 28 VYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE---AGKNAAYIDAASMPL-----------------T---- 78 (149)
T ss_dssp HHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT---TTCCEEEEETTTSCC-----------------C----
T ss_pred HHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEcHHHhhH-----------------H----
Confidence 3467777 8999999999999999999999998653 35 33333322110 0
Q ss_pred HHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 036088 193 EETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGL 272 (737)
Q Consensus 193 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgL 272 (737)
+++.+|++|++|||++ +
T Consensus 79 --------------------------------------------------------------~~~~~~~lLilDE~~~-~ 95 (149)
T 2kjq_A 79 --------------------------------------------------------------DAAFEAEYLAVDQVEK-L 95 (149)
T ss_dssp --------------------------------------------------------------GGGGGCSEEEEESTTC-C
T ss_pred --------------------------------------------------------------HHHhCCCEEEEeCccc-c
Confidence 1245799999999998 5
Q ss_pred CHHHHHHHHHHHHHHHHcCcE-EEEEecCCc
Q 036088 273 DSTSAFNVVKVLKQIAKSGSI-VIMSIHQPS 302 (737)
Q Consensus 273 D~~~~~~i~~~L~~l~~~g~t-vi~~~H~~~ 302 (737)
|...+..+.+.+.++.++|++ +|+++|.+.
T Consensus 96 ~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 96 GNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp CSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred ChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 555588899999998887888 888988654
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.32 E-value=3.3e-13 Score=132.04 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=42.3
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcH
Q 036088 257 IHDPILLFLDEPIS-GLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSH 303 (737)
Q Consensus 257 ~~~p~illLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 303 (737)
+.+|++|+||||++ ++|+.....+.+++.+..++|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999995 999999999999999988789999999999754
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.30 E-value=8.7e-14 Score=154.21 Aligned_cols=170 Identities=15% Similarity=0.110 Sum_probs=98.1
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHH
Q 036088 118 LDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLM 197 (737)
Q Consensus 118 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~ 197 (737)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.+. ....+++|.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 489999999999999999999999999999999842 223333221 1223455555430 0011111110
Q ss_pred HhhhhcCCCCCcHHH--HHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 036088 198 FSAEFRLPRSLSKEK--KRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDST 275 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~ 275 (737)
+.........+.... ..++++.++..++++ +.....||+|++||+.+|++|+.+|.+|++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 000000000111111 011222233333332 122346999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHHH-HcCcEEEEEecCCcHHHHhhcceE
Q 036088 276 SAFNVVKVLKQIA-KSGSIVIMSIHQPSHRILSLLDRL 312 (737)
Q Consensus 276 ~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v 312 (737)
.+ ..++.+++.. +.|.+++.+|..-...+.++++.+
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 77 5555555544 447676655533233455665554
No 137
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.28 E-value=2.3e-13 Score=144.99 Aligned_cols=121 Identities=11% Similarity=0.112 Sum_probs=82.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEE---CCEeCCccc--cc-ceEEEEecCCCCC-----CCCCHHH
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTL---NGEVLGSKL--LK-IISAYVMQDDLLY-----SMLTIEE 194 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~---~G~~~~~~~--~~-~~~~yV~Q~~~l~-----~~lTV~e 194 (737)
.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|++++... .+ +.+|||+|++.+. +++|+ |
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 479999999999999999999999 8764 4899999 998875421 22 2479999998553 78899 8
Q ss_pred HH--HHhh----hhcCCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHH
Q 036088 195 TL--MFSA----EFRLPRSLSKEKKRKRVDALIDQLGLRS-AAMTIIGDEQHRGVSGGERRRVSIGVD 255 (737)
Q Consensus 195 ~l--~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRvsiA~a 255 (737)
++ .|.- .++.....+..+...+++++++.++|.+ ..+.... .|||.++|++.|||+
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~-----~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK-----IIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH-----HTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhcc
Confidence 88 4541 0111110112233457899999999986 5555544 599999999999874
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=3.3e-12 Score=138.04 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=75.3
Q ss_pred EEEEcCCCCcHHHHHHHHHc-CCCCCCcceEEEECCEeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCC
Q 036088 131 TAILGASGSSKTTLMDAIAG-RISKQRLKGTVTLNGEVLGSK-LLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSL 208 (737)
Q Consensus 131 ~aI~GpsGaGKSTLL~~L~G-~~~~~~~~G~I~~~G~~~~~~-~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 208 (737)
+.|.||||+|||||+++|+| +..+. .|+|.++|.+.... ..+..+++++|.+.+.-..+ + .. ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG--VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT--CCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC--CCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---Cc
Confidence 89999999999999999999 65543 79999999876432 22445688888765421111 0 00 00
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 036088 209 SKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIA 288 (737)
Q Consensus 209 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~ 288 (737)
.. ..+++.++.+......+..+ .+|| +..+|+++++|||++ ||..+...+.+.|.+..
T Consensus 105 ~~----~~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DR----IVIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CH----HHHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred ch----HHHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 11 12334444332111111111 3566 788999999999999 99999999999998864
Q ss_pred HcCcEEEEEecCCcH
Q 036088 289 KSGSIVIMSIHQPSH 303 (737)
Q Consensus 289 ~~g~tvi~~~H~~~~ 303 (737)
+ +.++|+++|++..
T Consensus 163 ~-~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 K-NIRLIMVCDSMSP 176 (354)
T ss_dssp T-TEEEEEEESCSCS
T ss_pred C-CCEEEEEeCCHHH
Confidence 3 6789999999763
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.26 E-value=2.7e-15 Score=166.45 Aligned_cols=137 Identities=13% Similarity=0.065 Sum_probs=93.2
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc-------cccceEEEEe------
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK-------LLKIISAYVM------ 181 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yV~------ 181 (737)
+.+|+++ + .++|++++|+|||||||||||++|+|.+.+. +|+|.+.|.++... ..+..+++++
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 4578888 4 3899999999999999999999999998754 79999998876421 1223344544
Q ss_pred ---cCCCC--CCC----CCHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHH
Q 036088 182 ---QDDLL--YSM----LTIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVS 251 (737)
Q Consensus 182 ---Q~~~l--~~~----lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvs 251 (737)
|++.. +.. .|+.+++.++...... ..+......+ +.+.|..+|+.+.. . ...|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~-----~~~LSgg~~QR-- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--I-----SSSLLGVLAQR-- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--H-----HHHEEEEEEEE--
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--H-----HHHHHHHHHHH--
Confidence 88654 344 5899999876421100 0000001112 22346778887542 2 23699999999
Q ss_pred HHHHHhhCCcEEEE
Q 036088 252 IGVDIIHDPILLFL 265 (737)
Q Consensus 252 iA~aL~~~p~illL 265 (737)
||++|+.+|++..-
T Consensus 302 LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEECTTTCEEEE
T ss_pred hhhhhcCCCCccCC
Confidence 99999999998763
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.24 E-value=1.4e-14 Score=164.77 Aligned_cols=178 Identities=16% Similarity=0.090 Sum_probs=109.6
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
..+++++++.+++|+.++|+|||||||||||++|+|+++++ +|.|+++|.+--.......++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 45789999999999999999999999999999999998754 8999999865211112334556665543222345555
Q ss_pred HHHHhhhhcCC----CCCcHHHHH------------------HHHHHHHHHcCCcc---------cccccccCCCCCCCC
Q 036088 195 TLMFSAEFRLP----RSLSKEKKR------------------KRVDALIDQLGLRS---------AAMTIIGDEQHRGVS 243 (737)
Q Consensus 195 ~l~~~~~~~~~----~~~~~~~~~------------------~~v~~~l~~lgL~~---------~~~~~vg~~~~~~LS 243 (737)
.+..+.+.+.. .++...+.. ..++++++++.... ..+..+ .....+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~~s 402 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMWVR 402 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEEES
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEEEe
Confidence 44433221100 011111100 11334444443211 011111 1123479
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEE--EecCCcHHHHhhc
Q 036088 244 GGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIM--SIHQPSHRILSLL 309 (737)
Q Consensus 244 GGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~--~~H~~~~~i~~~~ 309 (737)
||||||+.++. + | |+|||+.....+++.|.++.+.|+|+++ ++|+.. ++.+.|
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 99999877641 2 7 9999998887777777777666888875 888875 455555
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.23 E-value=3.2e-14 Score=142.96 Aligned_cols=164 Identities=18% Similarity=0.145 Sum_probs=93.3
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcC
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRL 204 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~ 204 (737)
.++|++++|+||||||||||+++|+|++++. | ..+++|++++..+.. +..+++......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~---g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~-- 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ---G---------------LPAEVVPMDGFHLDN-RLLEPRGLLPRK-- 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT---T---------------CCEEEEESGGGBCCH-HHHGGGTCGGGT--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---C---------------CceEEEecCCCcCCH-HHHHHhcccccC--
Confidence 4789999999999999999999999997632 2 124566666554432 222222100000
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH-HHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 036088 205 PRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIG-VDIIHDPILLFLDEPISGLDSTSAFNVVKV 283 (737)
Q Consensus 205 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA-~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 283 (737)
..........+.+.+..+...+..+..+.+ ...++|+||+||++++ ++++.++.++++|||..
T Consensus 78 --~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~------------- 141 (208)
T 3c8u_A 78 --GAPETFDFEGFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW------------- 141 (208)
T ss_dssp --TSGGGBCHHHHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-------------
T ss_pred --CCCchhhHHHHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-------------
Confidence 111111122233444443222223333333 2345899999999987 77777877777888731
Q ss_pred HHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCEEEeeCChhhHHHHH
Q 036088 284 LKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQAVCSEAPSNLSQFF 333 (737)
Q Consensus 284 L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f 333 (737)
.++.+.--.+|.+.+.....+.+...|. +..|+ +.+++.+.+
T Consensus 142 -~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 142 -RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp -GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred -HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 1112222367778787665566677663 34454 455555443
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.22 E-value=3e-11 Score=133.24 Aligned_cols=153 Identities=13% Similarity=0.199 Sum_probs=88.4
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHH--HcCCCCC---CcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHH
Q 036088 123 GVASEGEITAILGASGSSKTTLMDAI--AGRISKQ---RLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLM 197 (737)
Q Consensus 123 ~~i~~Ge~~aI~GpsGaGKSTLL~~L--~G~~~~~---~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~ 197 (737)
+-+++|++++|+||||||||||++.| .+..++. ...+.|+++++.... ......
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~---------------------~~rl~~ 231 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR---------------------PVRLVS 231 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------HHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------HHHHHH
Confidence 57999999999999999999999944 5665421 113466776654210 000000
Q ss_pred HhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH-HHHHHHHHHHHHh--hCCcEEEEeCCCCCCCH
Q 036088 198 FSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSG-GERRRVSIGVDII--HDPILLFLDEPISGLDS 274 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG-GqrqRvsiA~aL~--~~p~illLDEPTsgLD~ 274 (737)
...++. +.. +.+++.+- +.. ..++ .+.+.+.-+.+++ .+|+++++||||+.+|+
T Consensus 232 ~a~~~g----l~~-------~~vleni~--------~~~----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 232 IAQRFG----LDP-------DDALNNVA--------YAR----AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHTT----CCH-------HHHHHTEE--------EEE----CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHcC----CCh-------HhHhhcEE--------Eec----cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 000000 000 01122111 110 1122 2233333333433 46999999999999997
Q ss_pred HHH------------HHHHHHHHHHHHc-CcEEEEEecCCc------------------HHHHhhcceEEEecCCE
Q 036088 275 TSA------------FNVVKVLKQIAKS-GSIVIMSIHQPS------------------HRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 275 ~~~------------~~i~~~L~~l~~~-g~tvi~~~H~~~------------------~~i~~~~D~v~lL~~G~ 319 (737)
... .++++.|++++++ |.|||+++|... ..+...+|.++.|++++
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 543 6788899999865 999999999821 12456789999998753
No 143
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.18 E-value=1.8e-15 Score=151.30 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=85.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----------CCcceEEEECCEeCC---cccccceEEEEecCCCCCCCCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRISK-----------QRLKGTVTLNGEVLG---SKLLKIISAYVMQDDLLYSMLT 191 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~-----------~~~~G~I~~~G~~~~---~~~~~~~~~yV~Q~~~l~~~lT 191 (737)
++|++++|+||||||||||+++|+|+++. .+..|+ ++|.++. ...+++. +.|+..++. .+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~---i~~~~~l~~-~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRD---IAAGDFIEH-AE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH---HHHTCEEEE-EE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHH---HHcCCCEee-ee
Confidence 58999999999999999999999998641 022454 3554332 1122222 134433332 24
Q ss_pred HHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH----HHHHHH-HHhhCCcEEEEe
Q 036088 192 IEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERR----RVSIGV-DIIHDPILLFLD 266 (737)
Q Consensus 192 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrq----RvsiA~-aL~~~p~illLD 266 (737)
+.+|+ ++ .+. +.+++.++.- .....+. + + .|-++ ++ .++ +++.+|++++||
T Consensus 76 ~~~n~-~g--------~~~----~~i~~~~~~~-~~~~~~~--~------~-~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-YG--------TSK----EAVRAVQAMN-RICVLDV--D------L-QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-EE--------EEH----HHHHHHHHTT-CEEEEEC--C------H-HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-CC--------CCH----HHHHHHHHcC-CcEEEEC--C------H-HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 44443 21 122 2234444321 0000110 0 0 11111 12 445 677788888888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecC
Q 036088 267 EPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSN 317 (737)
Q Consensus 267 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 317 (737)
|+|+++|..+...|.+.|.++.+. +...|.+ ..+|+|+++++
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 999999999999999999887653 2345621 57999988764
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.12 E-value=8.8e-14 Score=152.87 Aligned_cols=170 Identities=18% Similarity=0.164 Sum_probs=118.2
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC----------CCCcceEEEECCEeCCc----ccccce---EEEEecCCCC
Q 036088 124 VASEGEITAILGASGSSKTTLMDAIAGRIS----------KQRLKGTVTLNGEVLGS----KLLKII---SAYVMQDDLL 186 (737)
Q Consensus 124 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~----------~~~~~G~I~~~G~~~~~----~~~~~~---~~yV~Q~~~l 186 (737)
.+++|..++|+|+||||||||+|+|+|... ..+..|.|.++|..+.. ...++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 346899999999999999999999999321 12558999999854321 011122 2467777888
Q ss_pred CCCCCHHHHH--HHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC--cE
Q 036088 187 YSMLTIEETL--MFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDP--IL 262 (737)
Q Consensus 187 ~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p--~i 262 (737)
....+..|++ .|-..++. ++.++..++..+ +.....+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc-------cceeeeecccc------------Ccchhh
Confidence 8877776655 33332221 111111111111 12223356653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HHcCcEEEEEecCCcHHHHhhcceEE-EecCC-EEEeeCChh
Q 036088 263 LFLDEPISGLDSTSAFNVVKVLKQI-AKSGSIVIMSIHQPSHRILSLLDRLI-FLSNG-QAVCSEAPS 327 (737)
Q Consensus 263 llLDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~-lL~~G-~iv~~G~~~ 327 (737)
+++|||+.++|+......++.++++ ++.|.|++ +|... .+.++||++. +|.+| ++++.|+.+
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999999999999998 76677764 99865 5889999999 99999 998887654
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.07 E-value=7.9e-12 Score=133.02 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=67.0
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEE---CCEeCCccc--cc-ceEEEEecCCC-------------
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTL---NGEVLGSKL--LK-IISAYVMQDDL------------- 185 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~---~G~~~~~~~--~~-~~~~yV~Q~~~------------- 185 (737)
+.+|++++|+||||||||||||+|+|+..+. +|+|.+ +|++++... .+ +.+|||+|++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~--~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLR--VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC---------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccccc--ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 4579999999999999999999999998754 899999 898875421 11 24689999974
Q ss_pred ---CCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCc-ccccccc
Q 036088 186 ---LYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLR-SAAMTII 234 (737)
Q Consensus 186 ---l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 234 (737)
+|+++|+ ||+.|.. ... ..+...+++++|+.+||. +..+...
T Consensus 244 ~~~l~~~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 6889999 9998753 111 122345789999999995 5554443
No 146
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.05 E-value=6.2e-13 Score=143.54 Aligned_cols=168 Identities=19% Similarity=0.137 Sum_probs=106.0
Q ss_pred cccceeeeeEEEecC-------cEEEEEcCCCCcHHHHHHHHHcCCCC--CCcceEEEECCEeCCc---ccccceEEEEe
Q 036088 114 TKLLLDDISGVASEG-------EITAILGASGSSKTTLMDAIAGRISK--QRLKGTVTLNGEVLGS---KLLKIISAYVM 181 (737)
Q Consensus 114 ~~~iL~~vs~~i~~G-------e~~aI~GpsGaGKSTLL~~L~G~~~~--~~~~G~I~~~G~~~~~---~~~~~~~~yV~ 181 (737)
.+.+++++++.+++| +.++|.||||+|||||+++|+|.+.. .+.+|.+..++.++.. ...+..+.|+.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 346889999999877 89999999999999999999998631 1235666665554421 11234578999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCC-CCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 036088 182 QDDLLYSMLTIEETLMFSAEFRLPR-SLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDP 260 (737)
Q Consensus 182 Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p 260 (737)
|.+.+.+ ++.|++.......... -.......+.++..++.+++.. +.+.. ..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce-------
Confidence 9887765 7888886543321100 0011222344555555566543 44443 36999999998655
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHHHHhhcce
Q 036088 261 ILLFLDEPISGLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 261 ~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 311 (737)
.+||+.+..++.+.|++.++. + +.|++. .+..++++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAKR 211 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHHh
Confidence 788888999999999998753 3 356643 34555553
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.04 E-value=2.4e-11 Score=129.27 Aligned_cols=119 Identities=16% Similarity=0.151 Sum_probs=67.8
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEE---CCEeCCcc-cccce-EEEEecCCCCCC----CCCHH
Q 036088 123 GVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTL---NGEVLGSK-LLKII-SAYVMQDDLLYS----MLTIE 193 (737)
Q Consensus 123 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~---~G~~~~~~-~~~~~-~~yV~Q~~~l~~----~lTV~ 193 (737)
+++.+|++++|+||||+|||||+|+|+|...+. +|+|.+ +|+.++.. ...+. .||++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~--~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR--TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc--ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 446689999999999999999999999997644 899999 88876532 12222 699999987665 6899
Q ss_pred HHHH--Hhh------hhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 036088 194 ETLM--FSA------EFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRR 249 (737)
Q Consensus 194 e~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqR 249 (737)
|++. |.. .++........+....++++++.++|.+.+..... .++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~-----~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYV-----EFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH-----HHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHH-----HHHHHHhhc
Confidence 8883 321 01111101112234568999999999764332221 377777763
No 148
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.00 E-value=3.2e-11 Score=123.02 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=45.5
Q ss_pred hCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCcEEEEEecCCcHH-------HHhhcceEEEecC
Q 036088 258 HDPILLFLDEPISGL--DSTSAFNVVKVLKQIA-KSGSIVIMSIHQPSHR-------ILSLLDRLIFLSN 317 (737)
Q Consensus 258 ~~p~illLDEPTsgL--D~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~-------i~~~~D~v~lL~~ 317 (737)
.+|+++++|+|++.+ |+....+++..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 6655566667777665 4589999999986531 4577899999964
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.00 E-value=1.2e-13 Score=145.19 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=88.9
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc---cccceEEEEecCC-CCCCC
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK---LLKIISAYVMQDD-LLYSM 189 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~---~~~~~~~yV~Q~~-~l~~~ 189 (737)
...+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.++... ...+.+++++|+. ...+.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 356899999999999 99999999999999999999864 37999999876432 1233456777764 45566
Q ss_pred CCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 036088 190 LTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPI 269 (737)
Q Consensus 190 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPT 269 (737)
+++.|++......+. .. ..+ .+....+..+ ..|||||+||+.|++++..+|++| ||++
T Consensus 106 i~~~Deid~~~~~r~-------~~--~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRRS-------DR--ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhcccC-------CC--cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 666676654321110 00 000 0122223333 359999999999999999999975 8875
Q ss_pred C
Q 036088 270 S 270 (737)
Q Consensus 270 s 270 (737)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 3
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.96 E-value=2.6e-10 Score=121.43 Aligned_cols=114 Identities=13% Similarity=0.188 Sum_probs=81.7
Q ss_pred eeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhh
Q 036088 121 ISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSA 200 (737)
Q Consensus 121 vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~ 200 (737)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.... + ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~------~-------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRA------A-------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCH------H-------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccH------H-------------HH-------
Confidence 45556789999999999999999999999998643 57888776654210 0 01
Q ss_pred hhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH---HHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 036088 201 EFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRV---SIGVDIIHDPILLFLDEPISGLDSTSA 277 (737)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv---siA~aL~~~p~illLDEPTsgLD~~~~ 277 (737)
+.+..+.+.+|+... ...|||+.+++ +|++++..+|+++|+|||.. ....
T Consensus 149 --------------eqL~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 149 --------------EQLKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp --------------HHHHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred --------------HHHHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 112344555666421 13689999999 99999999999999999974 3455
Q ss_pred HHHHHHHHHHHH
Q 036088 278 FNVVKVLKQIAK 289 (737)
Q Consensus 278 ~~i~~~L~~l~~ 289 (737)
..+++.|+++.+
T Consensus 202 ~~l~~eL~~l~~ 213 (306)
T 1vma_A 202 KNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666666543
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.92 E-value=2.6e-10 Score=128.19 Aligned_cols=181 Identities=15% Similarity=0.133 Sum_probs=112.7
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce-EEEECCEeCCcccccceE-EEEecCCCCCCCCCH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG-TVTLNGEVLGSKLLKIIS-AYVMQDDLLYSMLTI 192 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G-~I~~~G~~~~~~~~~~~~-~yV~Q~~~l~~~lTV 192 (737)
...|+++.+-+++|+++.|.|++|+|||||+..|++..... .| .|.+.+.+.+......++ +... ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEG-------NINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH
Confidence 45788888889999999999999999999999999865321 23 344433322221111110 0000 0000
Q ss_pred HHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCC
Q 036088 193 EETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDII--HDPILLFLDEPIS 270 (737)
Q Consensus 193 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~--~~p~illLDEPTs 270 (737)
+.+ +. ..+... ...++.+.++.++..+.. +-+ ..++|.+|.+ +.++.++ .+|+++++|+++.
T Consensus 261 -~~l------~~-g~l~~~-~~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QNL------RT-GKLTPE-DWGKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HHH------HT-SCCCHH-HHHHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HHH------hc-CCCCHH-HHHHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 111 10 112222 234566666666443322 111 2368999987 5667776 6899999999998
Q ss_pred CCCH--------HHHHHHHHHHHHHHHc-CcEEEEEec---------C--Cc-------HHHHhhcceEEEecCCEE
Q 036088 271 GLDS--------TSAFNVVKVLKQIAKS-GSIVIMSIH---------Q--PS-------HRILSLLDRLIFLSNGQA 320 (737)
Q Consensus 271 gLD~--------~~~~~i~~~L~~l~~~-g~tvi~~~H---------~--~~-------~~i~~~~D~v~lL~~G~i 320 (737)
..+. ....++.+.|+.++++ |.+||+++| + |. ..+...+|.|++|.+++.
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 7742 3346788888998865 899999999 2 42 136678999999987653
No 152
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.88 E-value=7e-11 Score=133.66 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=100.2
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHc--CCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHH
Q 036088 120 DISGVASEGEITAILGASGSSKTTLMDAIAG--RISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLM 197 (737)
Q Consensus 120 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G--~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~ 197 (737)
.+++.+.++..++|.|++||||||+|+.|.. +.... .|++.+.+.|.....+... ..-+++.. +|.++..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~--p~~v~l~liDpK~~el~~~----~~lPhl~~--~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ--PEDVRFIMIDPKMLELSVY----EGIPHLLT--EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECCSSSGGGGG----TTCTTBSS--SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC--CceEEEEEECCchhhhhhh----ccCCcccc--eeecCHH
Confidence 4778888999999999999999999999875 33322 4777776666543221110 00011111 1222222
Q ss_pred Hhhh-hcCCCCCcHHHHHHHHHHHHHHcCCcccccc--cccCCCCCCCCHHHHHHH----------HHHHHHhhCCc-EE
Q 036088 198 FSAE-FRLPRSLSKEKKRKRVDALIDQLGLRSAAMT--IIGDEQHRGVSGGERRRV----------SIGVDIIHDPI-LL 263 (737)
Q Consensus 198 ~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~vg~~~~~~LSGGqrqRv----------siA~aL~~~p~-il 263 (737)
.+.. ++ ....+.++| .++++..|+.+..+- .+. ..+||||+||. .+++++...|. ++
T Consensus 231 ~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 231 DAANALR----WCVNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 2111 11 112334445 377888888754321 111 24788887652 35566677898 78
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc----CcEEEEEecCCc
Q 036088 264 FLDEPISGLDSTSAFNVVKVLKQIAKS----GSIVIMSIHQPS 302 (737)
Q Consensus 264 lLDEPTsgLD~~~~~~i~~~L~~l~~~----g~tvi~~~H~~~ 302 (737)
++||++.-+|.. ...+.+.|.++++. |.++|++||+|+
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999988843 34566666666543 668999999997
No 153
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.87 E-value=3.6e-11 Score=119.41 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=49.8
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCccc---ccceEEEEecCCCCCCCCCHHHHHH
Q 036088 122 SGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKL---LKIISAYVMQDDLLYSMLTIEETLM 197 (737)
Q Consensus 122 s~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yV~Q~~~l~~~lTV~e~l~ 197 (737)
|+++++|++++|+||||||||||+++|+|+.+ .+.++|....... .+..++|++|++.+++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999852 4677776654321 2345689999877766666655543
No 154
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.86 E-value=3.4e-09 Score=114.96 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhC--CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHcCcEEEEEecCCcH-----
Q 036088 248 RRVSIGVDIIHD--PILLFLDEPISGL----------DS---TSAFNVVKVLKQI----AKSGSIVIMSIHQPSH----- 303 (737)
Q Consensus 248 qRvsiA~aL~~~--p~illLDEPTsgL----------D~---~~~~~i~~~L~~l----~~~g~tvi~~~H~~~~----- 303 (737)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.+++| .+.|.|||+++|-...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888755 9999999999998 33 2223445555555 3458999999996431
Q ss_pred ----------HHHhhcceEEEecCCEEEeeCC
Q 036088 304 ----------RILSLLDRLIFLSNGQAVCSEA 325 (737)
Q Consensus 304 ----------~i~~~~D~v~lL~~G~iv~~G~ 325 (737)
.+..++|.++.+.+++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2456899999998877665554
No 155
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.85 E-value=3.5e-13 Score=137.43 Aligned_cols=39 Identities=23% Similarity=0.177 Sum_probs=22.9
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHH-cCCC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIA-GRIS 153 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~-G~~~ 153 (737)
.+..+++|+++++|++++|+||||||||||+++|+ |+.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999 9964
No 156
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.84 E-value=4.3e-09 Score=111.55 Aligned_cols=118 Identities=16% Similarity=0.077 Sum_probs=83.6
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHH
Q 036088 119 DDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMF 198 (737)
Q Consensus 119 ~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~ 198 (737)
++++++ +|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+...... + +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~------------------~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAA------------------R-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHH------------------H-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhH------------------H-HHH--
Confidence 678887 99999999999999999999999997643 6888887766532100 0 000
Q ss_pred hhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC-CCCCCHHHH
Q 036088 199 SAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEP-ISGLDSTSA 277 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEP-TsgLD~~~~ 277 (737)
..+.+..|+.-... + .+-.-.+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01223345542210 0 01234456789999988899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 036088 278 FNVVKVLKQI 287 (737)
Q Consensus 278 ~~i~~~L~~l 287 (737)
.++.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8887776665
No 157
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.84 E-value=1.4e-10 Score=123.78 Aligned_cols=86 Identities=13% Similarity=0.109 Sum_probs=68.3
Q ss_pred cceeeeeEEE-------------------ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEE---CCEeCCcccc
Q 036088 116 LLLDDISGVA-------------------SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTL---NGEVLGSKLL 173 (737)
Q Consensus 116 ~iL~~vs~~i-------------------~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~---~G~~~~~~~~ 173 (737)
++++++++.+ ++|+++||+||||||||||+++|+|++...+.+|+|.+ +|...... .
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-V 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-H
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-H
Confidence 3788888877 89999999999999999999999998751123799999 88775432 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHHhhhhc
Q 036088 174 KIISAYVMQDDLLYSMLTIEETLMFSAEFR 203 (737)
Q Consensus 174 ~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~ 203 (737)
++.++++ |+..+++.+|+.+++.+...++
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 3446788 8777888899999998876553
No 158
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.83 E-value=4.5e-09 Score=111.48 Aligned_cols=141 Identities=15% Similarity=0.189 Sum_probs=88.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLP 205 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~ 205 (737)
++|++++|+||||+||||+++.|++.+.+. +| +.+.++.+|.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 479999999999999999999999987532 35 13456666652 235555554322
Q ss_pred CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 036088 206 RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLK 285 (737)
Q Consensus 206 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~ 285 (737)
+.+|+.... ..+. +.-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 112332110 0122 33345555 45999999999 99999876655544433
Q ss_pred HHH---HcCcEEEE-EecCCcHHHHhhcceEEEecCCEEEee
Q 036088 286 QIA---KSGSIVIM-SIHQPSHRILSLLDRLIFLSNGQAVCS 323 (737)
Q Consensus 286 ~l~---~~g~tvi~-~~H~~~~~i~~~~D~v~lL~~G~iv~~ 323 (737)
-+. ..+.++++ ++|... ++.+.+|++..+..+.++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEe
Confidence 332 22334444 478754 57778888776777777753
No 159
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.81 E-value=1.6e-09 Score=121.85 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=47.9
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLG 169 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 169 (737)
..+|+++|+++++ ++++|+|||||||||||++|+|++++. +|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD--LTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC--TTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC--CCEEEECCEEcc
Confidence 4589999999999 999999999999999999999998754 899999998875
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.76 E-value=1.1e-09 Score=107.95 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=76.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC---C------cceEEEECCEeCCcc-----cccceEEEEecCCCC-CCCCCHHH
Q 036088 130 ITAILGASGSSKTTLMDAIAGRISKQ---R------LKGTVTLNGEVLGSK-----LLKIISAYVMQDDLL-YSMLTIEE 194 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~~~~---~------~~G~I~~~G~~~~~~-----~~~~~~~yV~Q~~~l-~~~lTV~e 194 (737)
.++|+|+||||||||++.++|...+. + .+|+|.++|+++... ...+..++++|.... ...++|.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 68999999999999999999986431 1 379999999865310 111111222221000 00011111
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHH---HcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALID---QLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISG 271 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~---~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsg 271 (737)
.. .. ...+.+..+++ ........-..+++. .+|..-..+++.+|++|+.+|+++++| ||+
T Consensus 111 ~~------------~~-~s~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IA------------KH-LTYENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TT------------CH-HHHHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred Cc------------CH-HHHHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 00 00 00011111111 111111111112221 123322234578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 036088 272 LDSTSAFNVVKVLKQI 287 (737)
Q Consensus 272 LD~~~~~~i~~~L~~l 287 (737)
+|.....++++.|.+.
T Consensus 174 ld~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988753
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.76 E-value=3.1e-12 Score=134.16 Aligned_cols=124 Identities=13% Similarity=0.167 Sum_probs=83.0
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc---cccceEEEEecCCC-CCCCC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK---LLKIISAYVMQDDL-LYSML 190 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~---~~~~~~~yV~Q~~~-l~~~l 190 (737)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++... ..++.+++++|+.. ..+.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 45789999999999 89999999999999999999864 68999998765321 12233467777643 56667
Q ss_pred CHHHHHHHhhhhcCCC-CCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 036088 191 TIEETLMFSAEFRLPR-SLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPIL 262 (737)
Q Consensus 191 TV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~i 262 (737)
++.|++......+... .....+..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh
Confidence 8888884322111100 0001122223333322 3899999999999999998875
No 162
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.74 E-value=1.5e-10 Score=134.59 Aligned_cols=160 Identities=15% Similarity=0.116 Sum_probs=98.9
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCC---------
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDD--------- 184 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~--------- 184 (737)
...+++++++.+.+|+.++|+||||+|||||+++|++...+. .-|.+.+++.+... ....++++||..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 456899999999999999999999999999999999998653 24889998877643 334578888743
Q ss_pred -------------CCCCCCCHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHH
Q 036088 185 -------------LLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVS 251 (737)
Q Consensus 185 -------------~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvs 251 (737)
..+..+++.+|+........+...-. .......+ .+|.-+.. .....++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~~---L~G~~~~~-----~~~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAGA---LLGDVRHD-----PFQSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHHH---HHCEECCC-----CC----CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHHh---cCceEEec-----hhhcCCcccccccccc
Confidence 11122222222211000000000000 00000111 11211111 0112469999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 036088 252 IGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQ 286 (737)
Q Consensus 252 iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~ 286 (737)
.++....++.+|||||... |++.....+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 898888777777764
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.72 E-value=4.7e-12 Score=130.71 Aligned_cols=124 Identities=13% Similarity=0.164 Sum_probs=82.3
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc---cccceEEEEecCC-CCCCCC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK---LLKIISAYVMQDD-LLYSML 190 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~---~~~~~~~yV~Q~~-~l~~~l 190 (737)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++... ..++.+++++|+. ...+.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 45889999999999 89999999999999999999864 68999988765321 1123345677763 355667
Q ss_pred CHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 036088 191 TIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPIL 262 (737)
Q Consensus 191 TV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~i 262 (737)
++.|++......+.. ......+..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh
Confidence 777777432211110 00011122233333332 3789999999999999999876
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.60 E-value=1.5e-09 Score=110.61 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=39.9
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc-----------cccceEEEEecC
Q 036088 122 SGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK-----------LLKIISAYVMQD 183 (737)
Q Consensus 122 s~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~-----------~~~~~~~yV~Q~ 183 (737)
++++.+ ++++|+|||||||||||++|+|.+.+. +|+|.++|.++... ..+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD--LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC--TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC--CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 899999999999999999999998754 89999999887311 124557898884
No 165
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.53 E-value=2.9e-08 Score=107.59 Aligned_cols=71 Identities=21% Similarity=0.142 Sum_probs=44.5
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE-EECCEeCCcccccceEEEEecCCCCCCCCCHHHHH
Q 036088 124 VASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV-TLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETL 196 (737)
Q Consensus 124 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I-~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l 196 (737)
-+++|+++.|.||+|+|||||+..+++...+. .|.+ ++++.........+.+|+.+|+..+....++.+.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l 128 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL 128 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH
Confidence 58899999999999999999999999875422 3544 55555432222223345555543333333444433
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.48 E-value=4.1e-08 Score=96.90 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 036088 250 VSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIA 288 (737)
Q Consensus 250 vsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~ 288 (737)
...|++|+.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887754
No 167
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.48 E-value=1.1e-07 Score=107.08 Aligned_cols=59 Identities=25% Similarity=0.455 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HcCcEEEEEecCCc
Q 036088 244 GGERRRVSIGVDIIHDPILLFLDEP----------ISGLDSTSAFNVVKVLKQIA----KSGSIVIMSIHQPS 302 (737)
Q Consensus 244 GGqrqRvsiA~aL~~~p~illLDEP----------TsgLD~~~~~~i~~~L~~l~----~~g~tvi~~~H~~~ 302 (737)
|++++|-.++++....|.|||+||+ +.|.|......+.++|..+- ..+..||.+||+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6788888899999999999999999 44677776667777777663 24678999999974
No 168
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.42 E-value=3.9e-10 Score=123.37 Aligned_cols=143 Identities=15% Similarity=0.071 Sum_probs=84.1
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCC-CCCCCCHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDL-LYSMLTIE 193 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~-l~~~lTV~ 193 (737)
..+|+++++.+++|++++|+||||||||||+++|+|.. +|++..-+.+ ....+..+++++|... ++...+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~--~~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLP--LDRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSC--TTTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEecc--chhHHHHHHHhcchhHHHHHHHHHH
Confidence 46899999999999999999999999999999999963 4777652111 1112223567777653 33333322
Q ss_pred HHHHHhhhhcCCCCCcHHHHHHHHHHHHHH---cCCcc-cc---cc-----cccCCCCCCCCHHHHHHHHHHHHHhhCCc
Q 036088 194 ETLMFSAEFRLPRSLSKEKKRKRVDALIDQ---LGLRS-AA---MT-----IIGDEQHRGVSGGERRRVSIGVDIIHDPI 261 (737)
Q Consensus 194 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~~-~~---~~-----~vg~~~~~~LSGGqrqRvsiA~aL~~~p~ 261 (737)
..+ . .+.... ........+.+.++. +.+.. .. +. .+ +.....+++|+++|+..+.+++.+|+
T Consensus 229 ~~~--~--r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~l-d~~~~~l~~~~~~rl~~~~~l~~~pD 302 (377)
T 1svm_A 229 GGE--S--RDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIV-TMNEYSVPKTLQARFVKQIDFRPKDY 302 (377)
T ss_dssp TTT--T--TTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEE-EECSCCCCHHHHTTEEEEEECCCCHH
T ss_pred HHH--H--hhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCccc-ChhHHhhcHHHHHHHhhhhccCCCCC
Confidence 211 0 000000 000011223333331 00110 00 00 11 12234589999999999888889999
Q ss_pred EEE-EeCCCC
Q 036088 262 LLF-LDEPIS 270 (737)
Q Consensus 262 ill-LDEPTs 270 (737)
+++ ||+|+.
T Consensus 303 LliyLd~~~~ 312 (377)
T 1svm_A 303 LKHCLERSEF 312 (377)
T ss_dssp HHHHHHTCTH
T ss_pred eEEEEeCCHH
Confidence 887 999987
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.42 E-value=2.5e-07 Score=100.80 Aligned_cols=151 Identities=14% Similarity=0.140 Sum_probs=89.5
Q ss_pred cCcE-EEEEcCCCCcHHHHHHHHHcCCCC---------CCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHH---
Q 036088 127 EGEI-TAILGASGSSKTTLMDAIAGRISK---------QRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE--- 193 (737)
Q Consensus 127 ~Ge~-~aI~GpsGaGKSTLL~~L~G~~~~---------~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~--- 193 (737)
.|-. ++|+|++|||||||+|.|+|.... ++..|.|.++|.++. +....|++.|.+. ..|.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHH
Confidence 3444 999999999999999999998641 145799999997642 1222355544221 1121
Q ss_pred HHHHHhhh--h---cCC-CCCc--HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH----HHH-hhCC
Q 036088 194 ETLMFSAE--F---RLP-RSLS--KEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIG----VDI-IHDP 260 (737)
Q Consensus 194 e~l~~~~~--~---~~~-~~~~--~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA----~aL-~~~p 260 (737)
.++..... + -.+ .... ..+..+.+.++++.+++.+..--.|++. ..-+|+|+++|+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 11111100 0 000 0111 1233445678888888765432223322 234788888988887 555 3344
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 036088 261 ILLFLDEPISGLDSTSAFNVVKVLKQIAK 289 (737)
Q Consensus 261 ~illLDEPTsgLD~~~~~~i~~~L~~l~~ 289 (737)
++ +|+|++|......+.+.|.++..
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 54 89999999999999999988654
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.41 E-value=8.4e-09 Score=102.49 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=40.5
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCccc--ccceEEEEecCCC
Q 036088 118 LDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKL--LKIISAYVMQDDL 185 (737)
Q Consensus 118 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yV~Q~~~ 185 (737)
..+-....++|++++|+||||||||||+++|++.+ |.+.++|.++.... .+...++++|+..
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDED 82 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcc
Confidence 33334556799999999999999999999999974 88999987764321 1123467777543
No 171
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.26 E-value=6.8e-08 Score=99.84 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=35.9
Q ss_pred eEEEEeE-EEEEecCcccCCCCCccCccccccccccceeeeeEEEec---CcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 82 LLSFNNL-SYSVKVGQKLLPDLPFVGSQDDVKKTKLLLDDISGVASE---GEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 82 ~l~~~nl-s~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+|+++|+ +++|.. .+.+|+|+|+++++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~-------------------~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-------------------EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC-------------------cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 7999999 998831 35699999999999 9999999999999999999999864
No 172
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.25 E-value=6.5e-07 Score=96.34 Aligned_cols=129 Identities=13% Similarity=0.125 Sum_probs=84.4
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
..-|+.+.+-+++|+++.|.|++|+|||||+.-++..... .|. .+.|+.= .++..+
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g~---------~Vl~fSl------Ems~~q 88 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DDR---------GVAVFSL------EMSAEQ 88 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TTC---------EEEEEES------SSCHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCC---------eEEEEeC------CCCHHH
Confidence 3457777777999999999999999999999888765321 111 1233221 123322
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDS 274 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~ 274 (737)
...|+......+++.+..+ | .||.+|.+|+..|...+.++++++.|+|...
T Consensus 89 ------------------l~~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--- 139 (338)
T 4a1f_A 89 ------------------LALRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--- 139 (338)
T ss_dssp ------------------HHHHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC---
T ss_pred ------------------HHHHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc---
Confidence 2223322222233322221 2 4999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHHHc--CcEEEEEe
Q 036088 275 TSAFNVVKVLKQIAKS--GSIVIMSI 298 (737)
Q Consensus 275 ~~~~~i~~~L~~l~~~--g~tvi~~~ 298 (737)
..+|...++++.++ |..+|++-
T Consensus 140 --i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 140 --IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp --HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred --HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 33677777777654 56677663
No 173
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.24 E-value=1.1e-06 Score=104.89 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCcEEEEE-ecCCcHHHHhhcceEE
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLDEPIS-GLDSTSAFNVVKVLKQIAKSGSIVIMS-IHQPSHRILSLLDRLI 313 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~~-~H~~~~~i~~~~D~v~ 313 (737)
.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.......++|+++ ||++. .+.+++++..
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~ 263 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAP 263 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCC
Confidence 3479999999999999999999999999996 999887777776666554446778875 89864 5777777543
No 174
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.19 E-value=6.1e-07 Score=87.16 Aligned_cols=37 Identities=35% Similarity=0.384 Sum_probs=33.4
Q ss_pred ce--eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 036088 117 LL--DDISGVASEGEITAILGASGSSKTTLMDAIAGRISK 154 (737)
Q Consensus 117 iL--~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~ 154 (737)
.+ +++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45 7899999999 9999999999999999999998754
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.13 E-value=7.3e-07 Score=88.07 Aligned_cols=31 Identities=26% Similarity=0.271 Sum_probs=27.2
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 036088 124 VASEGEITAILGASGSSKTTLMDAIAGRISK 154 (737)
Q Consensus 124 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~ 154 (737)
++++|++++|+||||||||||+++|+++..+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999743
No 176
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.10 E-value=2.8e-07 Score=91.51 Aligned_cols=127 Identities=14% Similarity=0.230 Sum_probs=70.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCCCc
Q 036088 130 ITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLS 209 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 209 (737)
+++|+|||||||||+.++|+++ |...+++.++ .+... + +.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-------g~~~id~d~~----~~~~~----~-----~~-------------------- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-------GVPLVDADVV----AREVV----A-----KD-------------------- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-------TCCEEEHHHH----HHHTT----C-----SS--------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC-------CCcccchHHH----HHHHc----c-----CC--------------------
Confidence 6899999999999999999984 3333332111 00000 0 00
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 036088 210 KEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAK 289 (737)
Q Consensus 210 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~ 289 (737)
...+.++.+.+|.... .+.|+.+|..++..+..+|..+.++ ++.++|.....+.+.++..
T Consensus 44 ----~~~~~~i~~~~g~~~~------------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-- 103 (206)
T 1jjv_A 44 ----SPLLSKIVEHFGAQIL------------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-- 103 (206)
T ss_dssp ----CHHHHHHHHHHCTTCC------------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--
T ss_pred ----hHHHHHHHHHhCHHHh------------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--
Confidence 0124455555654311 3678889999988888877643322 3345555555554444332
Q ss_pred cCcEEEEEecCCcHH-HHhhcceEEEec
Q 036088 290 SGSIVIMSIHQPSHR-ILSLLDRLIFLS 316 (737)
Q Consensus 290 ~g~tvi~~~H~~~~~-i~~~~D~v~lL~ 316 (737)
.+.++|+.+|...+. ....||.+++|+
T Consensus 104 ~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 104 TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 255788888875431 246688887773
No 177
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.09 E-value=1.2e-08 Score=115.53 Aligned_cols=129 Identities=14% Similarity=0.188 Sum_probs=83.3
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCccc---ccceEEEEecCCC-CCCCC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKL---LKIISAYVMQDDL-LYSML 190 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yV~Q~~~-l~~~l 190 (737)
..+++++++.+++| +.|+||||+|||||+++|++... .+.|.++|.++.... ..+.+..++|+.. ..+.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 34788999999999 89999999999999999999863 588999987764321 1122345666542 34555
Q ss_pred CHHHHHHHhhhhcCC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 036088 191 TIEETLMFSAEFRLP-RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPI 269 (737)
Q Consensus 191 TV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPT 269 (737)
.+.|++......+.. ......+..+.+.+++. .|||||+|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 555555322111110 00112233344444443 2678888888888888888886 77765
No 178
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.05 E-value=4.6e-06 Score=90.47 Aligned_cols=61 Identities=10% Similarity=0.139 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEe--cCCc
Q 036088 240 RGVSGGERRRVSIGVDIIHDPILLFLD-EPISGLDSTSAFNVVKVLKQIAKSGSIVIMSI--HQPS 302 (737)
Q Consensus 240 ~~LSGGqrqRvsiA~aL~~~p~illLD-EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~--H~~~ 302 (737)
..+|+||+|++. +.+...++-++++| +|++|+|......+++.+.++.. +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998887 66666788889999 99999999988888887777653 67777777 7754
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.05 E-value=5.2e-07 Score=96.59 Aligned_cols=77 Identities=13% Similarity=0.006 Sum_probs=55.5
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc-------cc-----cceEEEE-ecCC
Q 036088 118 LDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK-------LL-----KIISAYV-MQDD 184 (737)
Q Consensus 118 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~-------~~-----~~~~~yV-~Q~~ 184 (737)
++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.++... .+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 47899999999999999999999999999999997643 68999988776431 12 3446778 6654
Q ss_pred CCCCCCCHHHHH
Q 036088 185 LLYSMLTIEETL 196 (737)
Q Consensus 185 ~l~~~lTV~e~l 196 (737)
...+..++.+++
T Consensus 173 ~~~p~~~~~~~l 184 (320)
T 1zu4_A 173 NADPASVVFDAI 184 (320)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 443333333333
No 180
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.04 E-value=8.2e-07 Score=87.03 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999975
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.02 E-value=1.1e-05 Score=87.42 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-cEEEEEec
Q 036088 242 VSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSG-SIVIMSIH 299 (737)
Q Consensus 242 LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H 299 (737)
.++.++++..+++..+.+|++++|.-..+..|..+ ...++.++.+...| +++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774333445433 45566777765555 46666654
No 182
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.02 E-value=5.4e-08 Score=104.11 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=33.6
Q ss_pred ccceeeeeEEEecCc------EEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 115 KLLLDDISGVASEGE------ITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge------~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
++.|++++..+.+++ ++||+||||||||||+++|.+++.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456777777777766 999999999999999999999875
No 183
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.01 E-value=2.1e-06 Score=100.82 Aligned_cols=132 Identities=14% Similarity=0.072 Sum_probs=75.8
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcc---cccceEEEEecCCCCCCCCCHHHHHHH
Q 036088 122 SGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSK---LLKIISAYVMQDDLLYSMLTIEETLMF 198 (737)
Q Consensus 122 s~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~---~~~~~~~yV~Q~~~l~~~lTV~e~l~~ 198 (737)
|+.+++|+.++|+|++|+|||||++.|++........|+| .+|..+... ..++.+++.+|...+... ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 3456789999999999999999999999775432346877 566554321 122334444443332221 1111
Q ss_pred hhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 036088 199 SAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDSTSAF 278 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~~~~ 278 (737)
...||. |. ..++ .......-..+..++++| |+.|+|+.+.
T Consensus 77 -----------------------------nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~- 116 (665)
T 2dy1_A 77 -----------------------------FLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE- 116 (665)
T ss_dssp -----------------------------EEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH-
T ss_pred -----------------------------EEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH-
Confidence 111211 11 0011 112222335678889999 9999998776
Q ss_pred HHHHHHHHHHHcCcEEEEEecCCc
Q 036088 279 NVVKVLKQIAKSGSIVIMSIHQPS 302 (737)
Q Consensus 279 ~i~~~L~~l~~~g~tvi~~~H~~~ 302 (737)
+.++.+.+.+..+|+++|...
T Consensus 117 ---~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 ---RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp ---HHHHHHHHTTCCEEEEEECGG
T ss_pred ---HHHHHHHHccCCEEEEecCCc
Confidence 233333445788888888865
No 184
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.00 E-value=4.9e-07 Score=93.34 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=47.0
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCcceEEE--------ECCEeCCc----ccccceEEEEe
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIA---GRISKQRLKGTVT--------LNGEVLGS----KLLKIISAYVM 181 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~---G~~~~~~~~G~I~--------~~G~~~~~----~~~~~~~~yV~ 181 (737)
++++.+ ++|++++|+|||||||||++++|+ |+..+ .+|.|. .+|.++.. ...++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL--DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC--CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 444444 789999999999999999999999 88653 489998 89988743 23455678888
Q ss_pred cCC
Q 036088 182 QDD 184 (737)
Q Consensus 182 Q~~ 184 (737)
|++
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 753
No 185
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.99 E-value=1.9e-05 Score=85.47 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=35.4
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCcEEEEEecCCc
Q 036088 258 HDPILLFLDEPISGLDSTSAFNVVKVLKQIAK---SGSIVIMSIHQPS 302 (737)
Q Consensus 258 ~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~---~g~tvi~~~H~~~ 302 (737)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888777665 5778999999974
No 186
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.98 E-value=2.9e-07 Score=91.25 Aligned_cols=52 Identities=29% Similarity=0.356 Sum_probs=42.2
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEE--EECCEeCC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTV--TLNGEVLG 169 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I--~~~G~~~~ 169 (737)
....+..++..++|++++|+||||||||||+++|++++. . .|.+ +++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~--~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q--KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H--TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h--cCceEEEecCchhh
Confidence 345566677778999999999999999999999999874 2 5777 88877653
No 187
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=3.1e-06 Score=83.73 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=24.9
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
...+++|||+++++|++++|+||+||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999874
No 188
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.91 E-value=2.5e-06 Score=95.22 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=49.6
Q ss_pred hCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEE-ecCCEEEeeCChh
Q 036088 258 HDPILLFLDEPISGLDS-TSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIF-LSNGQAVCSEAPS 327 (737)
Q Consensus 258 ~~p~illLDEPTsgLD~-~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l-L~~G~iv~~G~~~ 327 (737)
.+|++|++||+..-.+. .+...+...+..+.+.|+.+|+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887664 6777888999988877899999999864332223333332 4557776666654
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.90 E-value=7e-05 Score=78.33 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----cCcEEEEEecCCc---HHH
Q 036088 243 SGGERRRVSIGVDIIHDPILLFLDEPISGLDST----------SAFNVVKVLKQIAK----SGSIVIMSIHQPS---HRI 305 (737)
Q Consensus 243 SGGqrqRvsiA~aL~~~p~illLDEPTsgLD~~----------~~~~i~~~L~~l~~----~g~tvi~~~H~~~---~~i 305 (737)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777888888899999999998766532 22234444443321 1345777888753 345
Q ss_pred HhhcceEEEec
Q 036088 306 LSLLDRLIFLS 316 (737)
Q Consensus 306 ~~~~D~v~lL~ 316 (737)
.+.|++.+.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 56677665543
No 190
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.84 E-value=6.4e-06 Score=80.21 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=29.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEEC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLN 164 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~ 164 (737)
+|++++|+||||||||||+++|++..++ ...|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeecc
Confidence 6899999999999999999999998642 235655443
No 191
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.82 E-value=4.1e-06 Score=84.99 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=34.0
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeC
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVL 168 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~ 168 (737)
.++|++++|.|+||||||||+++|+|+ .|+|.+.|+|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 468999999999999999999999997 48898888765
No 192
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.77 E-value=0.0001 Score=79.45 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=78.5
Q ss_pred eeeee-EEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHH
Q 036088 118 LDDIS-GVASEGEITAILGASGSSKTTLMDAIAGRIS-KQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEET 195 (737)
Q Consensus 118 L~~vs-~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~-~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~ 195 (737)
|+.+- +-+++|+++.|.||+|+|||||+..++.... +....| ....+.|+.-+..+ ....-
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg-------------~~~~vlyi~~E~~~----~~~~l 173 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY-------------PGGKIIFIDTENTF----RPDRL 173 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB-------------CCCEEEEEESSSCC----CHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC-------------CCCeEEEEECCCCC----CHHHH
Confidence 44433 4689999999999999999999999887421 111000 01123444433321 22222
Q ss_pred HHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH-HHHHHHHHHHh----hCCcEEEEeCCCC
Q 036088 196 LMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGE-RRRVSIGVDII----HDPILLFLDEPIS 270 (737)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGq-rqRvsiA~aL~----~~p~illLDEPTs 270 (737)
.....++. .. .+++++.+-+.. ..++.+ .+.+..++.++ .+++++++|+.++
T Consensus 174 ~~~~~~~g----~~-------~~~~l~~l~~~~------------~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 174 RDIADRFN----VD-------HDAVLDNVLYAR------------AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHTT----CC-------HHHHHHTEEEEE------------CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHcC----CC-------HHHHHhceeEee------------cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 22221111 11 112333321110 122322 34555566666 5699999999998
Q ss_pred CCCHH------------HHHHHHHHHHHHHHc-CcEEEEEecCC
Q 036088 271 GLDST------------SAFNVVKVLKQIAKS-GSIVIMSIHQP 301 (737)
Q Consensus 271 gLD~~------------~~~~i~~~L~~l~~~-g~tvi~~~H~~ 301 (737)
-.+.. ...++++.|++++++ +.+||++.|-.
T Consensus 231 l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 231 LFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 65432 134566667777754 78888887764
No 193
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.75 E-value=0.0001 Score=78.70 Aligned_cols=146 Identities=17% Similarity=0.201 Sum_probs=79.1
Q ss_pred ceeeee-EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHH
Q 036088 117 LLDDIS-GVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEET 195 (737)
Q Consensus 117 iL~~vs-~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~ 195 (737)
-|+.+- +-+++|+++.|.||+|+|||||+..++.........| |. ...+.|+.-+..+ ...+-
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~-------~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL-------SGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC-------SCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC-------CCeEEEEECCCCC----CHHHH
Confidence 344432 5689999999999999999999998886432110011 00 1123444433221 12221
Q ss_pred HHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH-HHHHHHHHHHHh---hCCcEEEEeCCCCC
Q 036088 196 LMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGG-ERRRVSIGVDII---HDPILLFLDEPISG 271 (737)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG-qrqRvsiA~aL~---~~p~illLDEPTsg 271 (737)
.....++. ... +++++.+- +.+ ..++. +.+.+..++.++ .+|+++++|+.++-
T Consensus 159 ~~~~~~~g----~~~-------~~~~~~l~--------~~~----~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 159 ENMAKALG----LDI-------DNVMNNIY--------YIR----AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHTT----CCH-------HHHHHTEE--------EEE----CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHhC----CCH-------HHHhccEE--------EEe----CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 11211111 111 12222211 111 12333 345677777787 57999999999975
Q ss_pred CCH--------H----HHHHHHHHHHHHHHc-CcEEEEEecCC
Q 036088 272 LDS--------T----SAFNVVKVLKQIAKS-GSIVIMSIHQP 301 (737)
Q Consensus 272 LD~--------~----~~~~i~~~L~~l~~~-g~tvi~~~H~~ 301 (737)
.+. . ...++++.|++++++ +.+||++.|-.
T Consensus 216 ~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 216 FRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred hhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 532 1 124566667777654 88888887753
No 194
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.73 E-value=2.1e-05 Score=83.23 Aligned_cols=152 Identities=14% Similarity=0.218 Sum_probs=82.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHHHHHHhhhhcCCCC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRS 207 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 207 (737)
+..++|+|++|+|||||+|.|.|... .+ ..+.+- ....+..+++.+++..+. +.| .|.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~------~i-~s~~~~--tTr~~~~gi~~~~~~~i~---~iD---------TpG- 65 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKI------SI-TSRKAQ--TTRHRIVGIHTEGAYQAI---YVD---------TPG- 65 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSE------EE-CCCCSS--CCSSCEEEEEEETTEEEE---EES---------SSS-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc------cc-cCCCCC--cceeeEEEEEEECCeeEE---EEE---------CcC-
Confidence 34899999999999999999999731 11 111111 112334577777653110 000 111
Q ss_pred CcHHHHHHHHHHHHHHc---CCccccccc--ccCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCCCHHH-HHH
Q 036088 208 LSKEKKRKRVDALIDQL---GLRSAAMTI--IGDEQHRGVSGGERRRVSIGVDII--HDPILLFLDEPISGLDSTS-AFN 279 (737)
Q Consensus 208 ~~~~~~~~~v~~~l~~l---gL~~~~~~~--vg~~~~~~LSGGqrqRvsiA~aL~--~~p~illLDEPTsgLD~~~-~~~ 279 (737)
.... ......+.+... .+. ..|.. +-+. .. +|+|++ .+++.+. ..|.++++ +.+|... ...
T Consensus 66 ~~~~-~~~~l~~~~~~~~~~~l~-~~D~vl~Vvd~-~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 66 LHME-EKRAINRLMNKAASSSIG-DVELVIFVVEG-TR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp CCHH-HHHHHHHHHTCCTTSCCC-CEEEEEEEEET-TC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred CCcc-chhhHHHHHHHHHHHHHh-cCCEEEEEEeC-CC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 1100 001111111100 111 11111 1111 22 898886 5566666 68999999 7899876 667
Q ss_pred HHHHHHHHHHc-Cc--EEEEEecCCcHHHHhhcceEE
Q 036088 280 VVKVLKQIAKS-GS--IVIMSIHQPSHRILSLLDRLI 313 (737)
Q Consensus 280 i~~~L~~l~~~-g~--tvi~~~H~~~~~i~~~~D~v~ 313 (737)
+.+.++++++. |. .+.+++|+-. .+.+++|.+.
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 88888888764 43 5666777754 3666776654
No 195
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.68 E-value=3.7e-05 Score=81.91 Aligned_cols=132 Identities=12% Similarity=0.106 Sum_probs=82.9
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCcccccceEEEEecCCCCCCCCCHHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEE 194 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~e 194 (737)
..-|+++.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.-+ ++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---~g---------------~~vl~~slE------~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---ND---------------DVVNLHSLE------MGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---TT---------------CEEEEEESS------SCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cC---------------CeEEEEECC------CCHHH
Confidence 3457777777899999999999999999998888753211 11 123343321 33333
Q ss_pred HHHHhhhhcCCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 036088 195 TLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFLDEPISGLDS 274 (737)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illLDEPTsgLD~ 274 (737)
.. .++......+++.+..+ |. ..||.+|++|+..|...+.++++++.|+|...
T Consensus 111 l~------------------~R~~~~~~~i~~~~l~~---~~---~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--- 163 (315)
T 3bh0_A 111 NI------------------KRLIVTAGSINAQKIKA---AR---RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--- 163 (315)
T ss_dssp HH------------------HHHHHHHTTCCHHHHHS---CH---HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB---
T ss_pred HH------------------HHHHHHHcCCCHHHHhc---CC---CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC---
Confidence 22 22222222222221110 10 12899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHHc-CcE--EEEEec
Q 036088 275 TSAFNVVKVLKQIAKS-GSI--VIMSIH 299 (737)
Q Consensus 275 ~~~~~i~~~L~~l~~~-g~t--vi~~~H 299 (737)
..++.+.++++.++ |.. +|++-|
T Consensus 164 --~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 --VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp --HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred --HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34577777777654 555 666644
No 196
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.68 E-value=2e-05 Score=78.53 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=26.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRISK 154 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~ 154 (737)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999753
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.65 E-value=2.3e-05 Score=77.69 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=26.5
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 124 VASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 124 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
++++|++++|+|+||||||||.+.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999999999985
No 198
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.61 E-value=1.8e-05 Score=78.66 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=25.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
.+|++++|+||||||||||++.|.+..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999999864
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.59 E-value=1.5e-05 Score=76.62 Aligned_cols=37 Identities=27% Similarity=0.536 Sum_probs=31.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVL 168 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~ 168 (737)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 468999999999999999999999873 6777776554
No 200
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.58 E-value=1e-05 Score=80.21 Aligned_cols=41 Identities=24% Similarity=0.185 Sum_probs=33.9
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEe
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEV 167 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~ 167 (737)
.++|++++|+|+||||||||+++|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~--~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ--GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCeEEEeccC
Confidence 5689999999999999999999999987532 5777766544
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.54 E-value=0.00012 Score=81.17 Aligned_cols=38 Identities=29% Similarity=0.201 Sum_probs=30.2
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCE
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGE 166 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~ 166 (737)
++.+++++||+|+||||++..|++.+... .++|.+-+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 57899999999999999999999887532 455655433
No 202
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.54 E-value=1.4e-05 Score=86.03 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=24.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
.++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998753
No 203
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.47 E-value=0.00013 Score=77.02 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=26.3
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 124 VASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 124 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+.++.-+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35788899999999999999999999874
No 204
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.41 E-value=2.6e-05 Score=89.28 Aligned_cols=43 Identities=35% Similarity=0.548 Sum_probs=36.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce-EEE-ECCEeC
Q 036088 124 VASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG-TVT-LNGEVL 168 (737)
Q Consensus 124 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G-~I~-~~G~~~ 168 (737)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcHH
Confidence 47799999999999999999999999998643 55 674 887654
No 205
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.39 E-value=0.00041 Score=70.99 Aligned_cols=34 Identities=32% Similarity=0.577 Sum_probs=24.4
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++++++..++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 345555555555 8899999999999999999875
No 206
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.38 E-value=6e-05 Score=72.07 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=24.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999985
No 207
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.36 E-value=9.6e-05 Score=69.87 Aligned_cols=31 Identities=42% Similarity=0.566 Sum_probs=25.2
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 036088 119 DDISGVASEGEITAILGASGSSKTTLMDAIAG 150 (737)
Q Consensus 119 ~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G 150 (737)
++.++.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445566665 999999999999999999873
No 208
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.35 E-value=5.2e-05 Score=76.88 Aligned_cols=67 Identities=16% Similarity=0.066 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcce
Q 036088 243 SGGERRRVSIGVDIIHDPILLFLDEPIS-GLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDR 311 (737)
Q Consensus 243 SGGqrqRvsiA~aL~~~p~illLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 311 (737)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.....+-++++++.--+...+.++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 445554442 33578999999999976 67776665555544443333456666644444445556543
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.26 E-value=0.00016 Score=86.75 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=27.8
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 124 VASEGEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 124 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
.+++|+.+.|.||||+|||||+++|++...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999999999863
No 210
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.24 E-value=0.00025 Score=78.91 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=38.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC----------CCCcceEEEECCEeCC---cccccceEEEEecCCCCCCCCCHHHHH
Q 036088 130 ITAILGASGSSKTTLMDAIAGRIS----------KQRLKGTVTLNGEVLG---SKLLKIISAYVMQDDLLYSMLTIEETL 196 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~~----------~~~~~G~I~~~G~~~~---~~~~~~~~~yV~Q~~~l~~~lTV~e~l 196 (737)
.++|+|+||+|||||+|.|+|... .++..|.+.++|+++. ....++..++.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999853 1244789999998652 112233334444444444443444444
Q ss_pred H
Q 036088 197 M 197 (737)
Q Consensus 197 ~ 197 (737)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 3
No 211
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.22 E-value=3.3e-05 Score=83.86 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=31.5
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 120 DISGVASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 120 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
|+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999874
No 212
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.20 E-value=0.00087 Score=72.56 Aligned_cols=35 Identities=34% Similarity=0.336 Sum_probs=28.1
Q ss_pred ceeeee--EEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 117 LLDDIS--GVASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 117 iL~~vs--~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
-|+.+- +-+++|+++.|.||+|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344443 35889999999999999999999887754
No 213
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.19 E-value=0.0012 Score=73.55 Aligned_cols=154 Identities=17% Similarity=0.180 Sum_probs=85.0
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce-EEEECCEeCCcccccceEEEEecCCCCCCCCCHH
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG-TVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIE 193 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G-~I~~~G~~~~~~~~~~~~~yV~Q~~~l~~~lTV~ 193 (737)
..-|+.+.+-+++|+++.|.|++|+|||||+.-++...... .| .| .|+.=+ ++..
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~v----------------l~~slE------~~~~ 242 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGV----------------GIYSLE------MPAA 242 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCE----------------EEEESS------SCHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeE----------------EEEECC------CCHH
Confidence 34577777779999999999999999999988887653211 12 12 222111 2222
Q ss_pred HHHH-H-hhhhcCC------CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCcEE
Q 036088 194 ETLM-F-SAEFRLP------RSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDII--HDPILL 263 (737)
Q Consensus 194 e~l~-~-~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~--~~p~il 263 (737)
+... + +.....+ ..++..+ ..++.+.++.+.-.. -.+-+ ..++|..+- .+.++.+. .+++++
T Consensus 243 ~l~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~---l~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lI 314 (444)
T 2q6t_A 243 QLTLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAP---IYIDD--TPDLTLMEV--RARARRLVSQNQVGLI 314 (444)
T ss_dssp HHHHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSC---EEEEC--CTTCBHHHH--HHHHHHHHHHSCCCEE
T ss_pred HHHHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCC---EEEEC--CCCCCHHHH--HHHHHHHHHHcCCCEE
Confidence 2111 0 0000000 0122222 334444444442111 11111 124676664 34555555 479999
Q ss_pred EEeCCCCCCCH----------HHHHHHHHHHHHHHHc-CcEEEEEecC
Q 036088 264 FLDEPISGLDS----------TSAFNVVKVLKQIAKS-GSIVIMSIHQ 300 (737)
Q Consensus 264 lLDEPTsgLD~----------~~~~~i~~~L~~l~~~-g~tvi~~~H~ 300 (737)
++|..+.-.+. .....+.+.|+.++++ +.+||+++|-
T Consensus 315 vID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 315 IIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL 362 (444)
T ss_dssp EEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred EEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 99998754332 1234677888888875 8889988873
No 214
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.16 E-value=3.1e-05 Score=83.38 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=42.7
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVL 168 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~ 168 (737)
+.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+. .|+|.+-+.+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~--~~~v~v~~~d~ 94 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE--GLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEECC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEeecC
Confidence 56889999999999999999999999999999999986532 56666655443
No 215
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.12 E-value=0.0037 Score=63.09 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999999754
No 216
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.10 E-value=0.00046 Score=66.06 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=23.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
No 217
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.07 E-value=0.0012 Score=69.85 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=34.0
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCcEEEEEecCC
Q 036088 257 IHDPILLFLDEPIS-GLDSTSAFNVVKVLKQIAKSGSIVIMSIHQP 301 (737)
Q Consensus 257 ~~~p~illLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 301 (737)
..++.+|++||+-. ..|..+...+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999865 2344677888888888877777777777654
No 218
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.06 E-value=0.00079 Score=66.03 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.-+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999864
No 219
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.03 E-value=0.0008 Score=69.67 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.4
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+.++.-+.|.||+|+|||||++.|+...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999874
No 220
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.03 E-value=9.3e-05 Score=84.77 Aligned_cols=50 Identities=24% Similarity=0.376 Sum_probs=40.5
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEe
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEV 167 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~ 167 (737)
..+++++++++ +|+.++|+||||+|||||+++|++...+ ..|+|.++|..
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~--~~~~i~~~~~~ 145 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR--KFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC--EEEEECCCC--
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC--CeEEEEecccc
Confidence 34677888877 8999999999999999999999999753 36888777643
No 221
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.01 E-value=2.2e-05 Score=85.38 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=29.3
Q ss_pred cccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEe
Q 036088 114 TKLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEV 167 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~ 167 (737)
.+.+++++++.| +|+|++|+|||||++.|.|.... ..|.+..++..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~--~~~~~~~~~~~ 74 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERVIPGAAEK 74 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC--------------
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC--CCCcccCCCcc
Confidence 356788998877 99999999999999999887432 24444444433
No 222
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.00 E-value=0.00014 Score=78.63 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=33.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLG 169 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 169 (737)
+++.+++|+|++|||||||+|.|+|...+. .|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~--~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER--GHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc--CCeEEEEeecCC
Confidence 467899999999999999999999986533 577777665543
No 223
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.95 E-value=0.00041 Score=68.91 Aligned_cols=31 Identities=42% Similarity=0.550 Sum_probs=25.1
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 120 DISGVASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 120 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
+.++.+.+| +++|+|||||||||++++|.-.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 445566665 9999999999999999998643
No 224
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.95 E-value=0.00034 Score=70.94 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=27.1
Q ss_pred ceeeeeEEEe---cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 117 LLDDISGVAS---EGEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 117 iL~~vs~~i~---~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
-|.++++++. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3667777776 899999999999999999999999875
No 225
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.94 E-value=0.00073 Score=65.68 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=21.1
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
..+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 34789999998887 6799999999999999999984
No 226
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.91 E-value=0.00044 Score=69.08 Aligned_cols=57 Identities=21% Similarity=0.158 Sum_probs=39.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCcceEEEE--------CCEeCCc----ccccceEEEEecCC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRIS-KQRLKGTVTL--------NGEVLGS----KLLKIISAYVMQDD 184 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~~-~~~~~G~I~~--------~G~~~~~----~~~~~~~~yV~Q~~ 184 (737)
+.+++|+|||||||||+.++|++.+. +...+|++.. +|.++.. ...++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 56899999999999999999998642 1133677766 6666542 12344567777753
No 227
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.85 E-value=0.0011 Score=66.88 Aligned_cols=53 Identities=23% Similarity=0.385 Sum_probs=43.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEec---------CCcHHHHhhcceEEEec
Q 036088 259 DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIH---------QPSHRILSLLDRLIFLS 316 (737)
Q Consensus 259 ~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~lL~ 316 (737)
+++++++||.-. |+. ++++.++.+++.|..||++-| .++.++..++|+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 553 366677777777999999999 56678899999999985
No 228
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.83 E-value=0.00056 Score=65.88 Aligned_cols=40 Identities=30% Similarity=0.393 Sum_probs=30.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce--EEEECCEeC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKG--TVTLNGEVL 168 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G--~I~~~G~~~ 168 (737)
++|++++|+|++||||||+.+.|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEECChHH
Confidence 47999999999999999999999997632 24 565655443
No 229
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.82 E-value=0.00026 Score=69.43 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=31.4
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
+.+++++|+..++++ ++|+|++|+|||||++.+.+-
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 458899998888874 789999999999999999874
No 230
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.81 E-value=0.00072 Score=67.46 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=30.4
Q ss_pred hCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCcE-EEEEecCC
Q 036088 258 HDPILLFLDEPISGL-DSTSAFNVVKVLKQIAKSGSI-VIMSIHQP 301 (737)
Q Consensus 258 ~~p~illLDEPTsgL-D~~~~~~i~~~L~~l~~~g~t-vi~~~H~~ 301 (737)
.+|.+|++||.-.-- +......+.+.+....+.+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 468999999965432 233367788888887766655 77777653
No 231
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.79 E-value=0.0052 Score=66.25 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355678999999999999999999864
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.75 E-value=0.0006 Score=67.33 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=25.8
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999999875
No 233
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.75 E-value=0.0016 Score=61.48 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 234
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.72 E-value=0.00033 Score=69.67 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=33.4
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcce--EEEECCEe
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRISKQRLKG--TVTLNGEV 167 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G--~I~~~G~~ 167 (737)
+++|.+++|+|++||||||+.+.|++.+.+ ..| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~--~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVR--DRRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHH--HHCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcc--ccCCcEEEECChH
Confidence 568999999999999999999999998642 256 77776543
No 235
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.68 E-value=0.00071 Score=65.74 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=26.3
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 120 DISGVASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 120 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777788999999999999999999999976
No 236
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.55 E-value=0.0046 Score=68.87 Aligned_cols=36 Identities=17% Similarity=0.043 Sum_probs=29.7
Q ss_pred cceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 116 LLLDDISGVASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 116 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.-|+.+.+-+++|+++.|.|++|+|||||+--++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 456666666899999999999999999998777654
No 237
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.55 E-value=0.0018 Score=69.57 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999764
No 238
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.54 E-value=0.0058 Score=62.02 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
++..-+.|.||+|+|||||.+.|+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344567899999999999999999863
No 239
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.53 E-value=0.0095 Score=63.08 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=27.9
Q ss_pred ceeeee-EEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 036088 117 LLDDIS-GVASEGEITAILGASGSSKTTLMDAIAG 150 (737)
Q Consensus 117 iL~~vs-~~i~~Ge~~aI~GpsGaGKSTLL~~L~G 150 (737)
-|+.+- +-+++|+++.|.||+|+|||||..-++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344433 5689999999999999999999988875
No 240
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.53 E-value=0.001 Score=65.25 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
+++|+|+|||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 5899999999999999999993
No 241
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.52 E-value=0.00055 Score=75.74 Aligned_cols=47 Identities=17% Similarity=0.010 Sum_probs=39.9
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC
Q 036088 119 DDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLG 169 (737)
Q Consensus 119 ~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 169 (737)
+++++. +|++++++|+||+||||++..|++.+.+. .|+|.+.+.+..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecccc
Confidence 567777 89999999999999999999999998643 688888776654
No 242
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.49 E-value=0.022 Score=60.49 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456678999999999999999999874
No 243
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.45 E-value=0.0022 Score=61.44 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 244
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.37 E-value=0.0018 Score=70.32 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=27.7
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHH
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIA 149 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~ 149 (737)
.+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 346777788776 99999999999999999986
No 245
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.33 E-value=0.0018 Score=62.84 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCcceEEEECCEe
Q 036088 129 EITAILGASGSSKTTLMDAIAGRISK-QRLKGTVTLNGEV 167 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~~~-~~~~G~I~~~G~~ 167 (737)
.+++|+|+||||||||++.|.+.+.. +..-|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 58899999999999999999987532 1224777776543
No 246
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.32 E-value=0.0098 Score=75.70 Aligned_cols=29 Identities=31% Similarity=0.321 Sum_probs=26.5
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 124 VASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 124 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
=+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 49999999999999999999999988753
No 247
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.31 E-value=0.00043 Score=74.59 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=34.2
Q ss_pred ccceeeeeEEEecCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 036088 115 KLLLDDISGVASEGEI--TAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~--~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
..+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3478888888999998 9999999999999999999875
No 248
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.29 E-value=0.00088 Score=68.68 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=35.6
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeC
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVL 168 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~ 168 (737)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D~~ 68 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGDSF 68 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecHHH
Confidence 444444 567788999999999999999999998753 25567776543
No 249
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.25 E-value=0.0021 Score=62.14 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=25.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
.+|.++.|+|++||||||+.+.|++.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999998864
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.24 E-value=0.0018 Score=63.53 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999874
No 251
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.19 E-value=0.00047 Score=72.81 Aligned_cols=47 Identities=21% Similarity=0.183 Sum_probs=37.2
Q ss_pred ee-eeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeC
Q 036088 119 DD-ISGVASEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVL 168 (737)
Q Consensus 119 ~~-vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G~~~ 168 (737)
++ ++++.+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 35 677665 9999999999999999999999987532 56777765554
No 252
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.17 E-value=0.0024 Score=61.51 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
No 253
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.12 E-value=0.0021 Score=70.30 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=32.6
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC---------CCCcceEEEECCE
Q 036088 124 VASEGEITAILGASGSSKTTLMDAIAGRIS---------KQRLKGTVTLNGE 166 (737)
Q Consensus 124 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~---------~~~~~G~I~~~G~ 166 (737)
.+..|..++|+|+||+|||||+|.|+|... ..+..|.|.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 456888999999999999999999999721 1234688877664
No 254
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.10 E-value=0.0028 Score=59.89 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 255
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.00063 Score=72.73 Aligned_cols=40 Identities=23% Similarity=0.403 Sum_probs=35.5
Q ss_pred cccceeeeeEEEecCcE--EEEEcCCCCcHHHHHHHHHcCCC
Q 036088 114 TKLLLDDISGVASEGEI--TAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 114 ~~~iL~~vs~~i~~Ge~--~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
...+++.++..++.|++ +.+.||+|+||||+++++++.+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 35588888888999998 99999999999999999999864
No 256
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.09 E-value=0.0032 Score=60.14 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998753
No 257
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.98 E-value=0.044 Score=61.76 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=28.8
Q ss_pred cceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 116 LLLDDISGVASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 116 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.-|+.+.+-+++|+++.|.|++|+|||||+--++--
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 345555556899999999999999999997766643
No 258
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.95 E-value=0.0036 Score=63.22 Aligned_cols=27 Identities=30% Similarity=0.243 Sum_probs=24.2
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999985
No 259
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.94 E-value=0.0032 Score=60.56 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999863
No 260
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.91 E-value=0.0071 Score=59.50 Aligned_cols=53 Identities=23% Similarity=0.351 Sum_probs=42.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEec---------CCcHHHHhhcceEEEec
Q 036088 259 DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIH---------QPSHRILSLLDRLIFLS 316 (737)
Q Consensus 259 ~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~lL~ 316 (737)
+.+++++||.-- +|+. +++.|+++++.|..||++-+ .++.++.+++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 478999999644 6543 36678888777999999998 55678899999998885
No 261
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.86 E-value=0.0044 Score=59.58 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=22.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+|.++.|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
No 262
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.83 E-value=0.0043 Score=63.05 Aligned_cols=25 Identities=20% Similarity=0.427 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999653
No 263
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.74 E-value=0.0044 Score=59.85 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.2
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
+++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999865
No 264
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.72 E-value=0.0054 Score=61.89 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHhhCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCcEEEEEec
Q 036088 255 DIIHDPILLFLDEPISG-LDSTSAFNVVKVLKQIAKSGSIVIMSIH 299 (737)
Q Consensus 255 aL~~~p~illLDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvi~~~H 299 (737)
++..+|+++++||+-.- .+.......++.+..+...|..++.++|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 34468999999998632 3322222333344445556888998888
No 265
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.72 E-value=0.015 Score=61.66 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=27.9
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 118 LDDISGVASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 118 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
|+.+-+-+.+|..+.|.||+|+|||||...++..
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3333356889999999999999999999998753
No 266
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.69 E-value=0.005 Score=60.33 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999997664
No 267
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.67 E-value=0.057 Score=58.64 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++.-+.|.||+|+|||+|.+.|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998874
No 268
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.65 E-value=0.0053 Score=62.96 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999864
No 269
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.63 E-value=0.0059 Score=60.59 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHc
Q 036088 127 EGEITAILGASGSSKTTLMDAIAG 150 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G 150 (737)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.61 E-value=0.0059 Score=57.40 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 036088 130 ITAILGASGSSKTTLMDAI 148 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L 148 (737)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 271
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.59 E-value=0.019 Score=57.36 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=43.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEec---------CCcHHHHhhcceEEEec
Q 036088 259 DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIH---------QPSHRILSLLDRLIFLS 316 (737)
Q Consensus 259 ~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~lL~ 316 (737)
+.+++++||.-- +|.. +++.|++++..|..||++-+ .++.++..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 578999999866 6543 34778888778999999999 77888999999999985
No 272
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.58 E-value=0.006 Score=63.83 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=28.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcceEEEECC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNG 165 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~G 165 (737)
..|.++.|.|||||||||+.+.|+.... .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 3577999999999999999999987642 25566665
No 273
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.56 E-value=0.038 Score=59.40 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+..-+.|.||+|+|||||.+.++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 345568899999999999999999864
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.55 E-value=0.0069 Score=58.24 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998753
No 275
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.54 E-value=0.0073 Score=58.87 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=24.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999875
No 276
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.53 E-value=0.0067 Score=58.94 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999864
No 277
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.52 E-value=0.017 Score=62.55 Aligned_cols=28 Identities=39% Similarity=0.459 Sum_probs=24.7
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 124 VASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 124 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
-+++|+++.|.||+|+|||||...++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 5789999999999999999998777643
No 278
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.51 E-value=0.0061 Score=58.45 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.5
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
++..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
No 279
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.43 E-value=0.0082 Score=58.71 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998653
No 280
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.38 E-value=0.0037 Score=61.52 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 281
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.38 E-value=0.033 Score=71.89 Aligned_cols=35 Identities=34% Similarity=0.336 Sum_probs=28.1
Q ss_pred ceeeee--EEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 117 LLDDIS--GVASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 117 iL~~vs--~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
-|+.+- +=+++|+++.|.||+|+|||||..-++.-
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 355443 25899999999999999999998777654
No 282
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.35 E-value=0.0086 Score=58.72 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=23.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998653
No 283
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.33 E-value=0.017 Score=55.56 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999766654
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.32 E-value=0.0089 Score=56.81 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 036088 129 EITAILGASGSSKTTLMDAIAG 150 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G 150 (737)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3789999999999999999997
No 285
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.31 E-value=0.04 Score=58.23 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.+..-+.|.||+|+|||+|.++++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35556899999999999999999976
No 286
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.30 E-value=0.0087 Score=58.18 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 347999999999999999999975
No 287
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.26 E-value=0.0088 Score=57.11 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999763
No 288
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.25 E-value=0.0089 Score=57.77 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++.+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 36779999999999999999999865
No 289
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.23 E-value=0.027 Score=62.78 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCC-CCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCc
Q 036088 246 ERRRVSIGVDIIHDPILLFLDEP-ISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPS 302 (737)
Q Consensus 246 qrqRvsiA~aL~~~p~illLDEP-TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 302 (737)
|++....+...+.+++++++... +.++.... ..+.+.|+ +.++.+|++.+...
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D 142 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLD 142 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC-
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECcc
Confidence 66666677777777887665544 44565554 44555554 35777777776643
No 290
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.22 E-value=0.013 Score=61.99 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=22.4
Q ss_pred EEEecCcEEEEEcCCCCcHHHH-HHHHHcC
Q 036088 123 GVASEGEITAILGASGSSKTTL-MDAIAGR 151 (737)
Q Consensus 123 ~~i~~Ge~~aI~GpsGaGKSTL-L~~L~G~ 151 (737)
+=+++| ++.|.||+|+||||| |.+++..
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 447889 999999999999999 5555443
No 291
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.19 E-value=0.0099 Score=57.31 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
.+++|+|++|||||||++.|++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998653
No 292
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.16 E-value=0.01 Score=58.26 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=24.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998653
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.12 E-value=0.01 Score=57.00 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
++.|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 294
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.08 E-value=0.01 Score=61.25 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999974
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.02 E-value=0.013 Score=56.40 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
++.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 296
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.96 E-value=0.03 Score=63.09 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.7
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455668999999999999999998863
No 297
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.92 E-value=0.057 Score=68.88 Aligned_cols=35 Identities=34% Similarity=0.336 Sum_probs=28.2
Q ss_pred ceeeee--EEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 117 LLDDIS--GVASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 117 iL~~vs--~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
-|+.+- +=+++|+++.|.||+|+|||||.--++..
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 455554 35899999999999999999998777653
No 298
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.92 E-value=0.018 Score=60.91 Aligned_cols=36 Identities=22% Similarity=0.123 Sum_probs=32.3
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
...+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46788988887 8899999999999999999999886
No 299
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.90 E-value=0.021 Score=61.81 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC---------CCCCcceEEEECC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRI---------SKQRLKGTVTLNG 165 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~---------~~~~~~G~I~~~G 165 (737)
|-.++|+|.+|+|||||++.|+|-. +..+..|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 3468999999999999999999943 1124467887766
No 300
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.89 E-value=0.011 Score=57.19 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999998753
No 301
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.013 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999874
No 302
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.14 Score=56.06 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.=+.+.||+|+|||+|.+++++..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh
Confidence 347799999999999999999874
No 303
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.84 E-value=0.013 Score=54.45 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999863
No 304
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.80 E-value=0.015 Score=54.61 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999864
No 305
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.77 E-value=0.015 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999985
No 306
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.77 E-value=0.015 Score=56.13 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 307
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.77 E-value=0.016 Score=57.43 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998753
No 308
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.73 E-value=0.015 Score=56.71 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999863
No 309
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.71 E-value=0.015 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 310
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.71 E-value=0.012 Score=54.70 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998764
No 311
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.71 E-value=0.012 Score=56.34 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=18.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 312
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.68 E-value=0.015 Score=53.61 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 313
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.67 E-value=0.015 Score=53.78 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999763
No 314
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.67 E-value=0.014 Score=53.77 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998764
No 315
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.63 E-value=0.017 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998753
No 316
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.62 E-value=0.017 Score=57.72 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=22.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++.++.|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998653
No 317
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.59 E-value=0.038 Score=51.09 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=28.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCC
Q 036088 259 DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQP 301 (737)
Q Consensus 259 ~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 301 (737)
+..+|++||.- .|+......+.+.+.+-.+.+..+|+++..+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 34689999974 6788878888877776533345566666654
No 318
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.59 E-value=0.017 Score=53.82 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999875
No 319
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.59 E-value=0.011 Score=64.40 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=36.6
Q ss_pred CCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCcEEEEEecCCcH
Q 036088 259 DPILLFLDEPISGLD---STSAFNVVKVLKQIAKSGSIVIMSIHQPSH 303 (737)
Q Consensus 259 ~p~illLDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 303 (737)
.|.++++||-=.=++ +..+..+.+.+++..+.|..++++||.|+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999977774 667777888888887778899999999864
No 320
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.58 E-value=0.017 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999763
No 321
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.55 E-value=0.017 Score=53.67 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 322
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.54 E-value=0.021 Score=53.72 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34478999999999999999998853
No 323
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.54 E-value=0.018 Score=59.67 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999963
No 324
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.53 E-value=0.016 Score=53.95 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999999864
No 325
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.52 E-value=0.017 Score=54.25 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998763
No 326
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.52 E-value=0.017 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 327
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.50 E-value=0.016 Score=54.57 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998763
No 328
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.50 E-value=0.018 Score=54.28 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998864
No 329
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.48 E-value=0.019 Score=56.55 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 330
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.46 E-value=0.13 Score=51.95 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=44.7
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecC---------CcHHHHhhcceEEEec
Q 036088 258 HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQ---------PSHRILSLLDRLIFLS 316 (737)
Q Consensus 258 ~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~---------~~~~i~~~~D~v~lL~ 316 (737)
.+.+++++||.---.| +.+.++.+++.|+.||++-++ +..++..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999977644 666666667789999999999 8888999999999985
No 331
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.45 E-value=0.018 Score=60.75 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.5
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+| .+||+|++|+|||||+|.|.|..
T Consensus 10 ~g-~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 10 VG-YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred CC-EEEEECCCCCcHHHHHHHHhCCC
Confidence 44 88999999999999999999963
No 332
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.44 E-value=0.015 Score=55.62 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999876
No 333
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.44 E-value=0.022 Score=55.56 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.5
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+-+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35589999999999999999998753
No 334
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.42 E-value=0.017 Score=55.46 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.40 E-value=0.018 Score=54.21 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999863
No 336
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.40 E-value=0.019 Score=58.46 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||+|.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999999974
No 337
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.40 E-value=0.021 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 338
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.36 E-value=0.018 Score=57.26 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=22.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998753
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.32 E-value=0.019 Score=54.21 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
++.|.|++||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 340
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.31 E-value=0.02 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999999874
No 341
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.30 E-value=0.021 Score=53.06 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999975
No 342
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.28 E-value=0.021 Score=54.69 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999874
No 343
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.28 E-value=0.021 Score=54.23 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999999764
No 344
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.27 E-value=0.023 Score=55.42 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999865
No 345
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.26 E-value=0.023 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999999753
No 346
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.26 E-value=0.023 Score=56.07 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997653
No 347
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.24 E-value=0.02 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999863
No 348
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.22 E-value=0.026 Score=53.35 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
=+.++|.|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999875
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.22 E-value=0.025 Score=53.18 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 350
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.22 E-value=0.022 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 351
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.19 E-value=0.022 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 352
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.18 E-value=0.026 Score=57.87 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999875
No 353
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.18 E-value=0.022 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 354
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.17 E-value=0.023 Score=52.68 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 036088 131 TAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 131 ~aI~GpsGaGKSTLL~~L~G~ 151 (737)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 355
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.13 E-value=0.021 Score=54.75 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998753
No 356
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.12 E-value=0.026 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999865
No 357
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.07 E-value=0.023 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999875
No 358
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.025 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998864
No 359
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.05 E-value=0.028 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
.++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999999764
No 360
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.01 E-value=0.025 Score=53.46 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999753
No 361
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.01 E-value=0.027 Score=59.30 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 344 58999999999999999999863
No 362
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.99 E-value=0.026 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 363
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.99 E-value=0.043 Score=54.24 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=29.8
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
...++..-..+ .|..++|+||+|+|||||...|+.+
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44667765554 6889999999999999999999876
No 364
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.98 E-value=0.029 Score=56.89 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=22.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999864
No 365
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.94 E-value=0.027 Score=53.13 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 366
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.94 E-value=0.016 Score=54.89 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 036088 128 GEITAILGASGSSKTTLMDAIAG 150 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G 150 (737)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 367
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.93 E-value=0.027 Score=53.88 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999864
No 368
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.91 E-value=0.029 Score=57.09 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998853
No 369
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.86 E-value=0.023 Score=58.65 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999998763
No 370
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.83 E-value=0.028 Score=55.19 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 371
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.81 E-value=0.027 Score=53.48 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998764
No 372
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.80 E-value=0.029 Score=54.24 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998764
No 373
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.80 E-value=0.029 Score=54.31 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999999864
No 374
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.79 E-value=0.033 Score=54.67 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
--+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999865
No 375
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.77 E-value=0.03 Score=57.43 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|.+|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999973
No 376
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.76 E-value=0.03 Score=53.64 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 377
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.73 E-value=0.049 Score=58.16 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=23.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
++.++.|+||+|||||||-..|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999875
No 378
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.72 E-value=0.03 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
No 379
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.72 E-value=0.029 Score=53.90 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.|.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999985
No 380
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.71 E-value=0.028 Score=60.92 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 036088 131 TAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 131 ~aI~GpsGaGKSTLL~~L~G~ 151 (737)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999986
No 381
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.70 E-value=0.037 Score=52.17 Aligned_cols=23 Identities=17% Similarity=0.214 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 382
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.66 E-value=0.031 Score=53.26 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+.-.++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999764
No 383
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.66 E-value=0.03 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999863
No 384
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.03 Score=53.92 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 385
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.65 E-value=0.031 Score=56.93 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 386
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.63 E-value=0.033 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999999763
No 387
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.63 E-value=0.025 Score=55.03 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
No 388
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.63 E-value=0.03 Score=56.57 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=21.9
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 125 ASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 125 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
..+|.++.|.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999998765
No 389
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.62 E-value=0.032 Score=53.96 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
.++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998654
No 390
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.61 E-value=0.019 Score=60.19 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=19.2
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
++-+++|.||+||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999874
No 391
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.61 E-value=0.04 Score=52.02 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=23.2
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998864
No 392
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.61 E-value=0.033 Score=52.66 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 393
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.56 E-value=0.034 Score=54.79 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998763
No 394
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.56 E-value=0.036 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 395
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.53 E-value=0.036 Score=54.93 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998753
No 396
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.52 E-value=0.034 Score=53.82 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 397
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.52 E-value=0.035 Score=57.73 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 036088 129 EITAILGASGSSKTTLMDAIAG 150 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G 150 (737)
.+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 398
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.52 E-value=0.035 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999875
No 399
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.51 E-value=0.039 Score=55.07 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.+.|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999865
No 400
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.46 E-value=0.033 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999864
No 401
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.39 E-value=0.041 Score=56.40 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999863
No 402
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.39 E-value=0.045 Score=54.62 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=24.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987654
No 403
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.39 E-value=0.034 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 404
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.39 E-value=0.038 Score=53.09 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999764
No 405
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.38 E-value=0.035 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 406
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.37 E-value=0.036 Score=52.45 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999854
No 407
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.35 E-value=0.04 Score=57.30 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
...+.|.||+|+|||||.++|++...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 35899999999999999999999864
No 408
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.34 E-value=0.037 Score=57.93 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
No 409
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.34 E-value=0.039 Score=57.02 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|.+|+|||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999873
No 410
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.34 E-value=0.036 Score=53.89 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 411
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.33 E-value=0.075 Score=54.34 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999874
No 412
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.33 E-value=0.022 Score=56.07 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999874
No 413
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.33 E-value=0.038 Score=53.67 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 414
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.32 E-value=0.039 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 036088 129 EITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999964
No 415
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.32 E-value=0.039 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999999753
No 416
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.30 E-value=0.039 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999864
No 417
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.04 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999763
No 418
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.26 E-value=0.04 Score=52.95 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 419
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.26 E-value=0.04 Score=53.59 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
=.++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999999763
No 420
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.23 E-value=0.038 Score=54.92 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 421
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.23 E-value=0.03 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998864
No 422
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.22 E-value=0.038 Score=54.10 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988753
No 423
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.20 E-value=0.042 Score=53.22 Aligned_cols=23 Identities=9% Similarity=0.198 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 67999999999999999999864
No 424
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.19 E-value=0.045 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999863
No 425
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.19 E-value=0.036 Score=52.71 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999976
No 426
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.19 E-value=0.039 Score=52.94 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998863
No 427
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.18 E-value=0.044 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999864
No 428
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.14 E-value=0.15 Score=65.87 Aligned_cols=36 Identities=33% Similarity=0.319 Sum_probs=30.4
Q ss_pred ceeeeeE--EEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 117 LLDDISG--VASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 117 iL~~vs~--~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
-|+.+.+ =+++|+++.|-|++|+|||||+.-++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3566654 68999999999999999999999888754
No 429
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.08 E-value=0.048 Score=56.69 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 036088 129 EITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 430
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.08 E-value=0.042 Score=53.65 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 431
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.06 E-value=0.035 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
No 432
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.04 E-value=0.05 Score=55.21 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=24.5
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987754
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.02 E-value=0.055 Score=54.24 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998753
No 434
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.01 E-value=0.054 Score=60.33 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=29.2
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+++.+ ..+-+|+..+|+||||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 55555 456689999999999999999999998753
No 435
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.00 E-value=0.049 Score=52.55 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 436
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.97 E-value=0.048 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 57999999999999999988753
No 437
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.95 E-value=0.054 Score=54.28 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.2
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
++..++.|+||+||||+|..+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 455688999999999999999998653
No 438
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.92 E-value=0.045 Score=53.71 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 439
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.91 E-value=0.043 Score=56.82 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
No 440
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.89 E-value=0.049 Score=53.57 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999975
No 441
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.86 E-value=0.049 Score=53.20 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998763
No 442
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.85 E-value=0.053 Score=58.04 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999875
No 443
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.81 E-value=0.05 Score=59.86 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.+..++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999865
No 444
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.80 E-value=0.06 Score=56.94 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+.+++|+||+|||||||...|+-..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999999874
No 445
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.77 E-value=0.05 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45677899999999999999998765
No 446
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.75 E-value=0.034 Score=52.68 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=9.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999865
No 447
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.72 E-value=0.05 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999853
No 448
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.71 E-value=0.061 Score=53.64 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
+|.++.+.|++||||||+.+.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999988764
No 449
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.70 E-value=0.06 Score=53.86 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=25.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
.+|.++.+.|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999998865
No 450
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.63 E-value=0.047 Score=52.71 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 451
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.60 E-value=0.063 Score=54.04 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=23.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36689999999999999999999876
No 452
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.53 E-value=0.056 Score=51.85 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999763
No 453
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.53 E-value=0.069 Score=53.69 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=24.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987653
No 454
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.48 E-value=0.082 Score=52.75 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=38.1
Q ss_pred hCCcEEEEeCCCC----CCCHHHHHHHHHHHHHHHHc-CcEEEEEecCCcHH---------HHhhcceEEEec
Q 036088 258 HDPILLFLDEPIS----GLDSTSAFNVVKVLKQIAKS-GSIVIMSIHQPSHR---------ILSLLDRLIFLS 316 (737)
Q Consensus 258 ~~p~illLDEPTs----gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~---------i~~~~D~v~lL~ 316 (737)
.+|+++++|--+. .-|.....+++..|++++++ +.+++++.|..... +...+|-|+.|.
T Consensus 134 ~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred cCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 4788888886432 12445566788888888765 89999998864321 123567776664
No 455
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.48 E-value=0.1 Score=50.45 Aligned_cols=36 Identities=22% Similarity=0.076 Sum_probs=28.6
Q ss_pred ccceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 115 KLLLDDISGVASEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 115 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
+..+|..-..+ .|.-++|.|+||+|||||...|..+
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 34566655554 6889999999999999999988764
No 456
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.46 E-value=0.069 Score=52.27 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=29.5
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCc
Q 036088 258 HDPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPS 302 (737)
Q Consensus 258 ~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 302 (737)
.+|.+|++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7777766666665432 12556888888754
No 457
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.45 E-value=0.065 Score=53.18 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999975
No 458
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.41 E-value=0.061 Score=52.99 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999864
No 459
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.40 E-value=0.062 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
-.++|+|++|+|||||++-+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 460
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.38 E-value=0.064 Score=55.09 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 461
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.31 E-value=0.07 Score=56.70 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++.|+||+|||||||-+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999875
No 462
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.22 E-value=0.047 Score=55.80 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=24.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999999875
No 463
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.15 E-value=0.07 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 464
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.13 E-value=0.066 Score=52.04 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998753
No 465
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.12 E-value=0.032 Score=54.70 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 466
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.00 E-value=0.083 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
++.|+||+||||+|.-+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999753
No 467
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.94 E-value=0.047 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999653
No 468
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.87 E-value=0.18 Score=56.44 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHHHHHHHh--h---------------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCC
Q 036088 239 HRGVSGGERRRVSIGVDII--H---------------DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQP 301 (737)
Q Consensus 239 ~~~LSGGqrqRvsiA~aL~--~---------------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 301 (737)
.+++||||+|-.-+|++.. . .-.+++|||. +-+|.......+++++++ |.-+|+++-.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 4579999999655554332 2 1257999999 999999999999999976 5556666644
Q ss_pred cHHHHhhcceEEEec
Q 036088 302 SHRILSLLDRLIFLS 316 (737)
Q Consensus 302 ~~~i~~~~D~v~lL~ 316 (737)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 2556788888775
No 469
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.85 E-value=0.025 Score=59.84 Aligned_cols=42 Identities=7% Similarity=0.117 Sum_probs=31.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCCc
Q 036088 259 DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQPS 302 (737)
Q Consensus 259 ~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 302 (737)
+++++++|| ...|+......+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788998888888888776543 344666776654
No 470
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.84 E-value=0.034 Score=53.68 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=4.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999876
No 471
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.82 E-value=0.074 Score=51.82 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 036088 129 EITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
=.++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 472
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.79 E-value=0.083 Score=54.38 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRIS 153 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~~ 153 (737)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999754
No 473
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.71 E-value=0.083 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 474
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.69 E-value=0.078 Score=51.66 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 475
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.63 E-value=0.28 Score=58.01 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+.+.||+|+|||+|.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 476
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.61 E-value=0.1 Score=55.10 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3478999999999999999999764
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.33 E-value=0.1 Score=57.08 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.+++|+||+|||||||.+.|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999999764
No 478
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.82 E-value=0.21 Score=55.10 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|.+++|||||+|.|.|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 479
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=90.75 E-value=0.15 Score=55.41 Aligned_cols=39 Identities=21% Similarity=0.412 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC---------CCcceEEEECCEeC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRISK---------QRLKGTVTLNGEVL 168 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~~~---------~~~~G~I~~~G~~~ 168 (737)
-+||+|.+-+|||||+|.|+|-... .+..|.+.++|..+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 5899999999999999999996431 23458888887654
No 480
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.67 E-value=0.14 Score=49.62 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=38.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCC---------cHHHHhhcceEEEec
Q 036088 259 DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQP---------SHRILSLLDRLIFLS 316 (737)
Q Consensus 259 ~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~---------~~~i~~~~D~v~lL~ 316 (737)
+++++++||.-. +|+ .+++.|+.++++|..||++.++. ...+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 36677888887889999988843 244667788887764
No 481
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.66 E-value=0.041 Score=65.84 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=28.5
Q ss_pred eeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 121 ISGVASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 121 vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++.+.+|+.+.|.||+|+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 35567899999999999999999999999985
No 482
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=90.66 E-value=0.13 Score=54.08 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 128 GEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 128 Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
+-.++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998876
No 483
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.53 E-value=0.13 Score=49.60 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=27.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCcEEEEEecCC
Q 036088 259 DPILLFLDEPISGLDSTSAFNVVKVLKQIAKSGSIVIMSIHQP 301 (737)
Q Consensus 259 ~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 301 (737)
++.++++||. ..++......+.+.+.+.. .+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 6889999996 4566666666666665532 245567777665
No 484
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.49 E-value=0.13 Score=47.52 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=23.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
..+.-+.|.||+|+|||+|.+.|....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 355668999999999999999999874
No 485
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.29 E-value=0.15 Score=52.92 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.8
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
++.-+.|.||+|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 55678999999999999999998765
No 486
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.25 E-value=0.15 Score=54.71 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.8
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
..-+++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998764
No 487
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.19 E-value=0.12 Score=57.05 Aligned_cols=22 Identities=36% Similarity=0.669 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 488
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.17 E-value=0.15 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++||||||+.+.|+-.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998653
No 489
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.16 E-value=0.15 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 129 EITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 129 e~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
-.++|+|.+|+|||||+|.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 468999999999999999999974
No 490
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=90.13 E-value=0.13 Score=56.14 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 036088 215 KRVDALIDQLGLRSAAMTIIGDEQHRGVSGGERRRVSIGVDIIHDPILLFL 265 (737)
Q Consensus 215 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRvsiA~aL~~~p~illL 265 (737)
+.++++++.++.... ...+|.+|.+++.-...+...|-|+++
T Consensus 180 ~~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 180 NDVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 346667777766432 124889998888777667778988887
No 491
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.61 E-value=0.056 Score=52.46 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 036088 130 ITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.++|+|++|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 5899999999999999988753
No 492
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.12 E-value=0.071 Score=54.30 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 036088 131 TAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 131 ~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+.|.||+|+|||||.++|++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6799999999999999999863
No 493
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=90.08 E-value=0.14 Score=57.27 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=20.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.|=.++|+|++|+|||||+|.|.|.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999986
No 494
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.05 E-value=0.12 Score=57.71 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 127 EGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 127 ~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.|=.++|+|++|+|||||+|.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4445999999999999999999985
No 495
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=89.85 E-value=0.1 Score=55.99 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 496
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.80 E-value=0.21 Score=49.14 Aligned_cols=72 Identities=19% Similarity=0.097 Sum_probs=52.8
Q ss_pred HHHHHHHHHHh--hCCcEEEEeCCCCC--CCHHHHHHHHHHHHHHHHcCcEEEEEecCCcHHHHhhcceEEEecCCE
Q 036088 247 RRRVSIGVDII--HDPILLFLDEPISG--LDSTSAFNVVKVLKQIAKSGSIVIMSIHQPSHRILSLLDRLIFLSNGQ 319 (737)
Q Consensus 247 rqRvsiA~aL~--~~p~illLDEPTsg--LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 319 (737)
++.+..++..+ .+.++++|||.+.. ++.....++++.|.+-- ....||+|...+..++.+++|.|.-|..-|
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp-~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARP-GHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC-TTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc-CCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 34455566666 56899999999762 33344456777776422 367899999999999999999999997643
No 497
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=89.80 E-value=0.11 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHH-HHcC
Q 036088 130 ITAILGASGSSKTTLMDA-IAGR 151 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~-L~G~ 151 (737)
.++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 6554
No 498
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=89.52 E-value=0.038 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 036088 130 ITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 130 ~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
.++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 499
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.49 E-value=0.18 Score=51.55 Aligned_cols=26 Identities=27% Similarity=0.196 Sum_probs=22.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcC
Q 036088 126 SEGEITAILGASGSSKTTLMDAIAGR 151 (737)
Q Consensus 126 ~~Ge~~aI~GpsGaGKSTLL~~L~G~ 151 (737)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999976
No 500
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=89.39 E-value=0.15 Score=58.67 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=26.2
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 036088 117 LLDDISGVASEGEITAILGASGSSKTTLMDAIAGRI 152 (737)
Q Consensus 117 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 152 (737)
+|.+++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 30 ~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 30 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 555542 233578999999999999999999974
Done!