Query 036089
Match_columns 118
No_of_seqs 122 out of 768
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:20:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.9 1.2E-27 2.6E-32 157.2 4.5 88 29-118 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.6 1.9E-15 4.1E-20 96.0 3.4 69 31-109 1-70 (73)
3 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 2.5E-14 5.5E-19 87.8 2.7 61 38-105 1-63 (63)
4 PF14368 LTP_2: Probable lipid 99.4 3.1E-14 6.7E-19 93.4 0.4 72 27-109 18-93 (96)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.2 8.2E-12 1.8E-16 78.2 3.4 60 35-108 3-64 (66)
6 smart00499 AAI Plant lipid tra 99.0 2.4E-10 5.3E-15 71.2 4.0 70 31-109 1-76 (79)
7 PF00234 Tryp_alpha_amyl: Prot 99.0 3.6E-12 7.7E-17 83.0 -5.7 71 32-117 9-90 (90)
8 cd01958 HPS_like HPS_like: Hyd 71.7 4.9 0.00011 26.2 2.8 74 30-109 3-81 (85)
9 PF14547 Hydrophob_seed: Hydro 71.4 1.3 2.8E-05 28.9 0.0 72 31-108 2-79 (85)
10 PF07172 GRP: Glycine rich pro 40.2 26 0.00057 23.1 2.2 9 1-9 1-9 (95)
11 PF05617 Prolamin_like: Prolam 27.7 68 0.0015 19.2 2.4 16 52-67 26-41 (70)
12 PF09680 Tiny_TM_bacill: Prote 26.7 70 0.0015 16.0 1.9 16 4-19 6-21 (24)
13 PRK13733 conjugal transfer pro 26.2 74 0.0016 23.4 2.7 29 1-32 1-29 (171)
14 PLN00214 putative protein; Pro 22.6 67 0.0015 22.1 1.8 57 6-64 9-71 (115)
15 cd00261 AAI_SS AAI_SS: Alpha-A 22.0 58 0.0013 21.2 1.4 62 36-107 13-104 (110)
16 TIGR01732 tiny_TM_bacill conse 20.6 1.2E+02 0.0025 15.4 2.0 16 4-19 8-23 (26)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.94 E-value=1.2e-27 Score=157.16 Aligned_cols=88 Identities=41% Similarity=0.871 Sum_probs=81.8
Q ss_pred CCChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccC-CCHHHHhccccccCCCC
Q 036089 29 VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN-TNATAIATLPGFCGVAL 107 (118)
Q Consensus 29 ~~C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~-~n~~~a~~LP~~Cgv~~ 107 (118)
.+|.++...|.||++|++++ +..|+++||++++++++.++|+.|++++|+|+++....++ +|++|+.+||++|||++
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~--~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~ 78 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGG--GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSI 78 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCC--CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCC
Confidence 36999999999999999983 5789999999999999999999999999999998877776 59999999999999999
Q ss_pred CCCCCCCCCCC
Q 036089 108 GFVIDPNTDCS 118 (118)
Q Consensus 108 p~~is~~~dC~ 118 (118)
+|+|+++|||+
T Consensus 79 ~~~i~~~~dC~ 89 (89)
T cd01960 79 PYPISPSTDCS 89 (89)
T ss_pred CCCCCCCCCCC
Confidence 99999999996
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.56 E-value=1.9e-15 Score=96.03 Aligned_cols=69 Identities=22% Similarity=0.546 Sum_probs=53.6
Q ss_pred ChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccCC-CHHHHhccccccCCCCCC
Q 036089 31 CTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNT-NATAIATLPGFCGVALGF 109 (118)
Q Consensus 31 C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~~-n~~~a~~LP~~Cgv~~p~ 109 (118)
|+.....|+||++||+++++...|++.||++||++ +++ |+|.+.....+++ |.+||++||++|||++|.
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~--------~~~--C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p~ 70 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA--------DLP--CLCRYKTSLVLQIIDPDKAVYLPAKCGLPLPP 70 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC--------CcC--CEeeccCCCcccccCHHHHHHHHHHcCCCCCC
Confidence 55555789999999998432356999999999985 333 8887665545544 999999999999998764
No 3
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.47 E-value=2.5e-14 Score=87.78 Aligned_cols=61 Identities=28% Similarity=0.592 Sum_probs=51.1
Q ss_pred ccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCcccc-CC-CHHHHhccccccCC
Q 036089 38 VSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTY-NT-NATAIATLPGFCGV 105 (118)
Q Consensus 38 L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~-~~-n~~~a~~LP~~Cgv 105 (118)
|.||++|+++ +...||++||++++++++. +++++|.++++..... +. |.+++.+||++|||
T Consensus 1 L~~C~~y~~~--~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTG--GATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcC--CCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 6799999998 3578999999999999753 6789999998765544 34 79999999999996
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.41 E-value=3.1e-14 Score=93.39 Aligned_cols=72 Identities=22% Similarity=0.526 Sum_probs=47.0
Q ss_pred cCCCChhcccCcccc---HHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCc-cccCCCHHHHhccccc
Q 036089 27 AEVDCTTVTTLVSSC---SSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLI-STYNTNATAIATLPGF 102 (118)
Q Consensus 27 a~~~C~~v~~~L~pC---l~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~-~~~~~n~~~a~~LP~~ 102 (118)
...+|. ..|.+| +.|+.+ ...||++||+++|++.+ .|+.++|..+++.. ..+++|.+|+.+||++
T Consensus 18 ~~~~c~---~~l~~c~~~~~~~~~---~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~ 86 (96)
T PF14368_consen 18 CCCSCA---NSLLPCCPCLCYVTG---GPAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGFGINVTRALALPAA 86 (96)
T ss_dssp BTTB-H---CCCCHH--HHHHHCC--------HHHHHHHCC---------HCCHHHCCCC-CCHCHHCCTCHHHHHHHHH
T ss_pred CcchhH---HHHhccccchhccCC---CCCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccCCcCHHHHHHHHHH
Confidence 345674 457776 788875 67899999999999843 35678888887765 4455699999999999
Q ss_pred cCCCCCC
Q 036089 103 CGVALGF 109 (118)
Q Consensus 103 Cgv~~p~ 109 (118)
||++.+.
T Consensus 87 Cg~~~~~ 93 (96)
T PF14368_consen 87 CGVPVPP 93 (96)
T ss_dssp CTSS-S-
T ss_pred cCCCCCC
Confidence 9999876
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.23 E-value=8.2e-12 Score=78.18 Aligned_cols=60 Identities=20% Similarity=0.440 Sum_probs=47.1
Q ss_pred ccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccC--CCHHHHhccccccCCCCC
Q 036089 35 TTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN--TNATAIATLPGFCGVALG 108 (118)
Q Consensus 35 ~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~--~n~~~a~~LP~~Cgv~~p 108 (118)
.+.|.+|++|+++ +..||++||+.+|+. ..++|..+++. .++ +|.++|++||++|||++|
T Consensus 3 ~~~L~~C~~ai~~---~~~Ps~~CC~~Lk~~---------~~CLC~y~~~p--~l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 3 PTQLSPCLPAILG---GSPPSAACCAKLKEQ---------QSCLCQYAKNP--SLKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhhcccCHHHHhC---CCCCCHHHHHHHhcC---------CCCeeeeecCc--cHHhhcCcHHHHHHHHHcCCCCC
Confidence 3589999999997 468999999999983 24566666553 332 488999999999999875
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.04 E-value=2.4e-10 Score=71.16 Aligned_cols=70 Identities=31% Similarity=0.664 Sum_probs=52.5
Q ss_pred ChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEecc--CccccC----CCHHHHhccccccC
Q 036089 31 CTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMD--LISTYN----TNATAIATLPGFCG 104 (118)
Q Consensus 31 C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~--~~~~~~----~n~~~a~~LP~~Cg 104 (118)
|..+...+.+|.+|++++.....|+.+||++++.++ ...|+|... ....+. .+..++.+||+.||
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~ 71 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG 71 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence 566677788999999983224678999999999984 135777643 222232 28999999999999
Q ss_pred CCCCC
Q 036089 105 VALGF 109 (118)
Q Consensus 105 v~~p~ 109 (118)
+..++
T Consensus 72 ~~~~~ 76 (79)
T smart00499 72 VPPPY 76 (79)
T ss_pred CCCCC
Confidence 99875
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=99.00 E-value=3.6e-12 Score=82.99 Aligned_cols=71 Identities=24% Similarity=0.599 Sum_probs=54.2
Q ss_pred hhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCcccc-----------CCCHHHHhccc
Q 036089 32 TTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTY-----------NTNATAIATLP 100 (118)
Q Consensus 32 ~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~-----------~~n~~~a~~LP 100 (118)
..+...+.+|.+|+++ ....|+.+||++|+++. +++.|..++..+.+. ..+..+|.+||
T Consensus 9 ~~~~~~l~~c~~~~~~--~~~~~~~~CC~~L~~l~--------~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP 78 (90)
T PF00234_consen 9 SPVQVRLSPCLPYLQG--GCQQPSQQCCQQLRQLD--------PQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLP 78 (90)
T ss_dssp GTTSSHHHGGHHHHTT--SSSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHH
T ss_pred hhccccccccHHHHhc--ccccchHHHhHHHHHHh--------HHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3333568999999998 35579999999999994 346666676554442 23899999999
Q ss_pred cccCCCCCCCCCCCCCC
Q 036089 101 GFCGVALGFVIDPNTDC 117 (118)
Q Consensus 101 ~~Cgv~~p~~is~~~dC 117 (118)
+.|||.+++ |||
T Consensus 79 ~~C~v~~~~-----~~C 90 (90)
T PF00234_consen 79 SMCNVSPPY-----TDC 90 (90)
T ss_dssp HHTTSSSSS-----S-G
T ss_pred HHCCCCCCC-----CCC
Confidence 999999998 776
No 8
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=71.72 E-value=4.9 Score=26.25 Aligned_cols=74 Identities=19% Similarity=0.386 Sum_probs=43.1
Q ss_pred CChhcccCccccHHHHhcCC--CCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccCC--CH-HHHhccccccC
Q 036089 30 DCTTVTTLVSSCSSFIEHGF--PDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNT--NA-TAIATLPGFCG 104 (118)
Q Consensus 30 ~C~~v~~~L~pCl~yv~g~~--~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~~--n~-~~a~~LP~~Cg 104 (118)
.|......|.-|..-+.... .+..|..+||+-++.+.+. ..+.|.|-.-.++-+++ |. =+..-|-..||
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl------dAA~CLCtaikan~lgi~~~~pv~l~llln~CG 76 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL------DAAVCLCTAIKANILGISINIPVALSLLLNSCG 76 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh------heeeeeeeeeeccccCcccccChhHHHHHHHHc
Confidence 35544456777877663211 1346779999999998653 13578886433333332 33 33444455799
Q ss_pred CCCCC
Q 036089 105 VALGF 109 (118)
Q Consensus 105 v~~p~ 109 (118)
-..|-
T Consensus 77 k~~P~ 81 (85)
T cd01958 77 RNVPP 81 (85)
T ss_pred CcCCC
Confidence 88663
No 9
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=71.43 E-value=1.3 Score=28.87 Aligned_cols=72 Identities=21% Similarity=0.429 Sum_probs=41.7
Q ss_pred ChhcccCccccHHHHhc--CCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccC---CCH-HHHhccccccC
Q 036089 31 CTTVTTLVSSCSSFIEH--GFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN---TNA-TAIATLPGFCG 104 (118)
Q Consensus 31 C~~v~~~L~pCl~yv~g--~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~---~n~-~~a~~LP~~Cg 104 (118)
|..-...|.-|...+.- -..+.++..+||+-++.+.+. ..+.|.|-.-.++.++ .|. -....|-..||
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CG 75 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACG 75 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhC
Confidence 44333467778887711 002335789999999998642 2357888532222222 222 25556777899
Q ss_pred CCCC
Q 036089 105 VALG 108 (118)
Q Consensus 105 v~~p 108 (118)
-..|
T Consensus 76 k~~p 79 (85)
T PF14547_consen 76 KTVP 79 (85)
T ss_pred CcCc
Confidence 8764
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=40.19 E-value=26 Score=23.10 Aligned_cols=9 Identities=33% Similarity=0.368 Sum_probs=5.2
Q ss_pred CchhHHHHH
Q 036089 1 MQSHKTLIA 9 (118)
Q Consensus 1 m~~~~~~~~ 9 (118)
|.+-++|++
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 775555554
No 11
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=27.68 E-value=68 Score=19.18 Aligned_cols=16 Identities=25% Similarity=0.715 Sum_probs=13.6
Q ss_pred CCCChhhhHHhhhhhh
Q 036089 52 PMPGSPCCEGVNSLNV 67 (118)
Q Consensus 52 ~~Ps~~CC~~lk~l~~ 67 (118)
...+++||..+..+.+
T Consensus 26 ~~i~~~CC~~i~~~g~ 41 (70)
T PF05617_consen 26 KNIGPECCKAINKMGK 41 (70)
T ss_pred CCCChHHHHHHHHHhH
Confidence 6789999999998753
No 12
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=26.75 E-value=70 Score=15.96 Aligned_cols=16 Identities=6% Similarity=0.175 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHhh
Q 036089 4 HKTLIAISISVLLTWL 19 (118)
Q Consensus 4 ~~~~~~~~l~l~~~~~ 19 (118)
++.+++++++|++.+.
T Consensus 6 FalivVLFILLiIvG~ 21 (24)
T PF09680_consen 6 FALIVVLFILLIIVGA 21 (24)
T ss_pred chhHHHHHHHHHHhcc
Confidence 3455555555555543
No 13
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=26.20 E-value=74 Score=23.40 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHHHHHHhhccccccccCCCCh
Q 036089 1 MQSHKTLIAISISVLLTWLGLFNWALAEVDCT 32 (118)
Q Consensus 1 m~~~~~~~~~~l~l~~~~~~~~~~a~a~~~C~ 32 (118)
|+..+.++.+..+|||.+-++ -....+|+
T Consensus 1 MK~~~~li~l~~~LlL~GCAg---~~s~f~C~ 29 (171)
T PRK13733 1 MKQISLLIPLLGTLLLSGCAG---TNSEFECN 29 (171)
T ss_pred CchhhHHHHHHHHHHhccccC---CCCCCCCC
Confidence 676666666666666666652 23335676
No 14
>PLN00214 putative protein; Provisional
Probab=22.61 E-value=67 Score=22.11 Aligned_cols=57 Identities=21% Similarity=0.391 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhcccccccc--C---CCChhcccCccccHHHHhcC-CCCCCCChhhhHHhhh
Q 036089 6 TLIAISISVLLTWLGLFNWALA--E---VDCTTVTTLVSSCSSFIEHG-FPDPMPGSPCCEGVNS 64 (118)
Q Consensus 6 ~~~~~~l~l~~~~~~~~~~a~a--~---~~C~~v~~~L~pCl~yv~g~-~~~~~Ps~~CC~~lk~ 64 (118)
.-+++++.|+.+..|+++...+ . .+|..-.+ .-|..-+..+ ....++|.+||..+-.
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~C~~Kmt--~KCa~EI~a~i~~N~t~s~~CC~~LVk 71 (115)
T PLN00214 9 TTLFIVVALVCAFVPVFSVEEAEAKSLWNTCLVKIT--PKCALDIIAVVFENGTLIDPCCNDLVK 71 (115)
T ss_pred hHHHHHHHHHHhcccccchhhhHHHHHHHHHHhhcc--HhhHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444555555566665544333 2 25653222 2376655321 1145679999998655
No 15
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=22.02 E-value=58 Score=21.24 Aligned_cols=62 Identities=18% Similarity=0.472 Sum_probs=37.9
Q ss_pred cCccccHHHHhcC-CCCC-----------CCChhhhHHhhhhhhhcccccCccccceE--eccCccc-----------cC
Q 036089 36 TLVSSCSSFIEHG-FPDP-----------MPGSPCCEGVNSLNVIADTTENKQSVCSC--LMDLIST-----------YN 90 (118)
Q Consensus 36 ~~L~pCl~yv~g~-~~~~-----------~Ps~~CC~~lk~l~~~a~t~~dr~~~C~C--lk~~~~~-----------~~ 90 (118)
..|.+|..|+.-. .+.. .....||.-++.+.. -|+| +...+.. +.
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i~~----------qcrC~al~~~~~~~~~~~~~~~~~~~ 82 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPE----------QCRCEALRQMVQGVIQQQQQQQEQQQ 82 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhCcH----------hhhHHHHHHHHHHHHHhhhccccccC
Confidence 4688999998521 0111 123689999999853 3555 4322111 11
Q ss_pred ----C-CHHHHhccccccCCCC
Q 036089 91 ----T-NATAIATLPGFCGVAL 107 (118)
Q Consensus 91 ----~-n~~~a~~LP~~Cgv~~ 107 (118)
. -...|..||+.||+..
T Consensus 83 ~~~~~~~~~~a~~Lp~~C~~~~ 104 (110)
T cd00261 83 GQEVERMRQAAQNLPSMCNLYP 104 (110)
T ss_pred cChHHHHHHHHHhhchhcCCCC
Confidence 1 3458999999999986
No 16
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.65 E-value=1.2e+02 Score=15.45 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHhh
Q 036089 4 HKTLIAISISVLLTWL 19 (118)
Q Consensus 4 ~~~~~~~~l~l~~~~~ 19 (118)
++.+++++++|++.++
T Consensus 8 f~livVLFILLIIiga 23 (26)
T TIGR01732 8 FALIVVLFILLVIVGA 23 (26)
T ss_pred hHHHHHHHHHHHHhhe
Confidence 3445555555555443
Done!