BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036090
MAAALLSLPAATRHETPVSQRSSTSSGYLIFHRSLSVASIKCPYNNRPTVLLCSAATSVS
VVEDVSSPLPPDAAATEGADKVGFRGCKVCGKEELEKGCNGEGTIQGGIATVPGFGWWPI
KAYRPCPGFLASGGRYRRQGQTMDEVAFGRGEKRAPVSSDSENIDPSKSRGGRKFKR

High Scoring Gene Products

Symbol, full name Information P value
AT5G42070 protein from Arabidopsis thaliana 2.6e-31

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036090
        (177 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2165795 - symbol:AT5G42070 "AT5G42070" species...   344  2.6e-31   1


>TAIR|locus:2165795 [details] [associations]
            symbol:AT5G42070 "AT5G42070" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009965
            "leaf morphogenesis" evidence=RCA] [GO:0030154 "cell
            differentiation" evidence=RCA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=RCA] EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009535 EMBL:AY091156 EMBL:AY114054
            EMBL:AY088853 IPI:IPI00536437 RefSeq:NP_568601.1 UniGene:At.30191
            STRING:Q8RWR9 PaxDb:Q8RWR9 PRIDE:Q8RWR9 EnsemblPlants:AT5G42070.1
            GeneID:834212 KEGG:ath:AT5G42070 TAIR:At5g42070 eggNOG:NOG327236
            HOGENOM:HOG000149121 InParanoid:Q8RWR9 OMA:SISLPRC
            ProtClustDB:CLSN2917729 ArrayExpress:Q8RWR9 Genevestigator:Q8RWR9
            Uniprot:Q8RWR9
        Length = 164

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 61/99 (61%), Positives = 73/99 (73%)

Query:    67 SPLPPDAAATEGADK--VGFRGCKVCGKEELEKGCNGEGTIQGGIATVPGFGWWPIKAYR 124
             S  P     T+  D   + F GC+ CGKEE E GCNG+G IQGGIATVPGFGWWPIKAYR
Sbjct:    49 SSSPSSVVETDNDDDNDLTFSGCRACGKEEKESGCNGDGRIQGGIATVPGFGWWPIKAYR 108

Query:   125 PCPGFLASGGRYRRQGQTMDEVAFGRGEKRAPVSSDSEN 163
             PCP F+ +GGRYRR GQ+MDEVAFGRG+ ++  S D+ +
Sbjct:   109 PCPAFVEAGGRYRRIGQSMDEVAFGRGDSKSSTSVDTSD 147


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      177       177   0.00084  109 3  11 22  0.46    32
                                                     31  0.50    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  147 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.85u 0.09s 17.94t   Elapsed:  00:00:01
  Total cpu time:  17.85u 0.09s 17.94t   Elapsed:  00:00:01
  Start:  Fri May 10 23:34:48 2013   End:  Fri May 10 23:34:49 2013

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