BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036090
         (177 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8VD50|DDT4L_RAT DNA damage-inducible transcript 4-like protein OS=Rattus norvegicus
           GN=Ddit4l PE=2 SV=1
          Length = 193

 Score = 32.0 bits (71), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 42  CPYNNRPTVLLCSAATSVSVVEDVSSPLPPDAAATEGADKVGFRGCKVCGKEELEKGCNG 101
           C   ++ T L CS    V V E ++  +  D       +  G RGC +    E+E  C  
Sbjct: 64  CLSKSKQTKLGCSK---VLVPEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKK 120

Query: 102 EGTIQGGIATVPGFGWWPIKAYRPC-----PGFLASGGRY 136
              I    + VP F    +     C       F  SGGR+
Sbjct: 121 LDRIVCDASVVPTFELTLVFKQESCSWTSLKDFFFSGGRF 160


>sp|Q8VHZ5|DDT4L_MOUSE DNA damage-inducible transcript 4-like protein OS=Mus musculus
           GN=Ddit4l PE=1 SV=1
          Length = 193

 Score = 31.6 bits (70), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 42  CPYNNRPTVLLCSAATSVSVVEDVSSPLPPDAAATEGADKVGFRGCKVCGKEELEKGCNG 101
           C   ++ T L CS    V V E ++  +  D       +  G RGC +    E+E  C  
Sbjct: 64  CLSRSKQTKLGCSK---VLVPEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKK 120

Query: 102 EGTIQGGIATVPGFGWWPIKAYRPCP-----GFLASGGRY 136
              I    + VP F    +     CP      F  S GR+
Sbjct: 121 LDRIVCDASVVPTFELTLVFKQESCPWTSLKDFFFSRGRF 160


>sp|O57374|HXD4A_DANRE Homeobox protein Hox-D4a OS=Danio rerio GN=hoxd4a PE=2 SV=2
          Length = 236

 Score = 30.4 bits (67), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 44  YNNRPTVLLCSAATSVSV-----VEDVSSPLPPDAAATEGADKVGFRGCKVCGKEELEKG 98
           Y+ +P   +CS     SV     V+D +S   P  A TE    V   G + CG+++  K 
Sbjct: 56  YSEQP--YICSTVQGSSVQPRGHVQDQASTPSPFPAQTEQCPAVQISGSRTCGQQQNTKT 113

Query: 99  CNGEGTIQGGIA 110
            NG  T Q  + 
Sbjct: 114 QNGIPTKQPAVV 125


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.132    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,993,039
Number of Sequences: 539616
Number of extensions: 2965916
Number of successful extensions: 6081
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6079
Number of HSP's gapped (non-prelim): 10
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)