Query 036090
Match_columns 177
No_of_seqs 20 out of 22
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 15:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bx9_A Anti-trap, AT, tryptoph 71.2 0.69 2.4E-05 30.3 -0.4 20 124-143 24-43 (53)
2 4fu6_A PC4 and SFRS1-interacti 65.8 2.5 8.7E-05 31.5 1.7 18 109-126 30-47 (153)
3 2daq_A WHSC1L1 protein, isofor 61.9 3.4 0.00012 29.0 1.6 17 109-125 16-32 (110)
4 1t8o_A Chymotrypsin A; chymotr 57.4 3.3 0.00011 31.0 1.0 29 90-118 1-30 (245)
5 2gfu_A DNA mismatch repair pro 55.3 4.9 0.00017 29.4 1.6 17 109-125 30-46 (134)
6 2l89_A PWWP domain-containing 54.1 4.5 0.00015 28.9 1.2 17 109-125 13-29 (108)
7 3lcz_A YCZA, inhibitor of trap 53.8 2.3 7.7E-05 27.8 -0.4 21 124-144 24-44 (53)
8 3qby_A Hepatoma-derived growth 50.1 11 0.00039 26.2 2.7 35 110-150 14-48 (94)
9 1h3z_A Hypothetical 62.8 kDa p 46.8 5.7 0.00019 28.0 0.7 16 110-125 15-30 (109)
10 1ri0_A Hepatoma-derived growth 45.4 6.9 0.00024 28.2 1.0 17 109-125 27-43 (110)
11 3llr_A DNA (cytosine-5)-methyl 44.8 8.7 0.0003 29.7 1.6 17 110-126 25-41 (154)
12 4f4o_C Haptoglobin; globin fol 42.4 6.7 0.00023 32.0 0.6 31 85-117 84-116 (347)
13 1z8g_A Serine protease hepsin; 40.2 8.5 0.00029 31.3 0.9 27 86-117 104-131 (372)
14 1khc_A DNA cytosine-5 methyltr 38.2 11 0.00036 28.6 1.1 17 109-125 19-35 (147)
15 2vnt_A Urokinase-type plasmino 33.5 11 0.00036 28.2 0.4 25 89-117 12-37 (276)
16 1ddj_A Plasminogen; catalytic 26.2 22 0.00075 26.5 1.1 28 89-117 3-31 (247)
17 1pyt_D TC, PCPA-TC, chymotryps 24.7 24 0.00083 26.3 1.1 18 101-118 10-28 (251)
18 2olg_A Pro-phenoloxidase activ 24.7 30 0.001 26.1 1.5 23 89-117 13-36 (278)
19 1elv_A Complement C1S componen 24.2 18 0.00062 28.4 0.3 31 85-117 64-96 (333)
20 2jx1_A Myelin transcription fa 23.9 23 0.00078 21.7 0.6 12 97-108 7-18 (31)
No 1
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=71.16 E-value=0.69 Score=30.32 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=17.6
Q ss_pred cCCchhhccCceeeeecccc
Q 036090 124 RPCPGFLASGGRYRRQGQTM 143 (177)
Q Consensus 124 RPCP~fvesGgrY~RqGQsm 143 (177)
.|||...-.|...+.||+++
T Consensus 24 ~~C~~C~G~G~v~~~qG~~~ 43 (53)
T 2bx9_A 24 TPCPACSGKGVILTAQGYTL 43 (53)
T ss_dssp EECTTTTTSSEEECHHHHHH
T ss_pred CCCccCCCCccEEEEecccH
Confidence 68999999999998888875
No 2
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=65.79 E-value=2.5 Score=31.47 Aligned_cols=18 Identities=22% Similarity=0.562 Sum_probs=15.3
Q ss_pred ccccCCCcceeeeeecCC
Q 036090 109 IATVPGFGWWPIKAYRPC 126 (177)
Q Consensus 109 iaavPgFgWWPIKAYRPC 126 (177)
-|=|.||.|||=++..|-
T Consensus 30 waK~~g~p~WPa~V~~~~ 47 (153)
T 4fu6_A 30 FAKMKGYPHWPARVDEVP 47 (153)
T ss_dssp EECCTTSCCEEEEECCCC
T ss_pred EEeCCCCCCCCEEEeEch
Confidence 466899999999999874
No 3
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=61.88 E-value=3.4 Score=29.03 Aligned_cols=17 Identities=24% Similarity=0.903 Sum_probs=14.7
Q ss_pred ccccCCCcceeeeeecC
Q 036090 109 IATVPGFGWWPIKAYRP 125 (177)
Q Consensus 109 iaavPgFgWWPIKAYRP 125 (177)
-|-+.||+|||-+++.|
T Consensus 16 waK~~g~p~WPa~V~~~ 32 (110)
T 2daq_A 16 WVKLGNYRWWPAEICNP 32 (110)
T ss_dssp EEECSSSCEEEEEECCT
T ss_pred EEEeCCCCCCceeeCCh
Confidence 35678999999999987
No 4
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Probab=57.40 E-value=3.3 Score=31.04 Aligned_cols=29 Identities=31% Similarity=0.672 Sum_probs=20.0
Q ss_pred CchhhhhccCCCccceeccccccCC-Ccce
Q 036090 90 CGKEELEKGCNGEGTIQGGIATVPG-FGWW 118 (177)
Q Consensus 90 CG~ee~~~GCnG~GRIqGGiaavPg-FgWW 118 (177)
||....+.--.+.+||.||.-+.|+ |+|-
T Consensus 1 cg~~~~~p~~~~~~rIvgG~~a~~~~~Pw~ 30 (245)
T 1t8o_A 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQ 30 (245)
T ss_dssp CCCCSSCCCCC----CBTCEECCTTSSTTE
T ss_pred CCCCcccccccCCCceECCEECCCCCCCce
Confidence 7777777777888999999998887 6763
No 5
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=55.27 E-value=4.9 Score=29.39 Aligned_cols=17 Identities=35% Similarity=1.001 Sum_probs=14.7
Q ss_pred ccccCCCcceeeeeecC
Q 036090 109 IATVPGFGWWPIKAYRP 125 (177)
Q Consensus 109 iaavPgFgWWPIKAYRP 125 (177)
.|-+-||+|||-+++.|
T Consensus 30 waK~~g~P~WPa~V~~~ 46 (134)
T 2gfu_A 30 WAKMEGYPWWPSLVYNH 46 (134)
T ss_dssp EECCTTSCCEEEECCCC
T ss_pred EEeecCCCCCCeeecch
Confidence 46678999999999987
No 6
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=54.05 E-value=4.5 Score=28.89 Aligned_cols=17 Identities=35% Similarity=1.107 Sum_probs=14.0
Q ss_pred ccccCCCcceeeeeecC
Q 036090 109 IATVPGFGWWPIKAYRP 125 (177)
Q Consensus 109 iaavPgFgWWPIKAYRP 125 (177)
.|-|-||+|||-++..|
T Consensus 13 waK~~gyP~WPa~V~~~ 29 (108)
T 2l89_A 13 LVKAPGYPWWPALLLRR 29 (108)
T ss_dssp EEECSSSCEEEEEEEEE
T ss_pred EEEeCCcCCCceEecCc
Confidence 45678999999999875
No 7
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=53.77 E-value=2.3 Score=27.84 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=17.1
Q ss_pred cCCchhhccCceeeeeccccc
Q 036090 124 RPCPGFLASGGRYRRQGQTMD 144 (177)
Q Consensus 124 RPCP~fvesGgrY~RqGQsmd 144 (177)
.|||..--.|..-+++|+.+-
T Consensus 24 ~~C~~C~G~G~v~~~~G~~~~ 44 (53)
T 3lcz_A 24 EPCPKCLGKGVILTAQGSTLL 44 (53)
T ss_dssp EECTTTTTSSEEECHHHHHHH
T ss_pred CcCCCCCCcEEEEEEeCchHH
Confidence 789999988888888887653
No 8
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=50.07 E-value=11 Score=26.22 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=22.0
Q ss_pred cccCCCcceeeeeecCCchhhccCceeeeeccccceeeecc
Q 036090 110 ATVPGFGWWPIKAYRPCPGFLASGGRYRRQGQTMDEVAFGR 150 (177)
Q Consensus 110 aavPgFgWWPIKAYRPCP~fvesGgrY~RqGQsmdeV~fGr 150 (177)
|=|-||.|||-++..+-. + ..++......=..||.
T Consensus 14 aK~~g~p~WPa~V~~~~~-----~-~~k~~~~~~~V~FFGt 48 (94)
T 3qby_A 14 AKMKGYPHWPARIDDIAD-----G-AVKPPPNKYPIFFFGT 48 (94)
T ss_dssp ECCTTSCCEEEEECCCCT-----T-SBCCCTTCEEEEETTT
T ss_pred EecCCCCCCCEEEeeccc-----c-cccCCCCEEEEEEEcC
Confidence 557899999999998632 1 2234444444455654
No 9
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=46.82 E-value=5.7 Score=28.01 Aligned_cols=16 Identities=31% Similarity=0.953 Sum_probs=13.6
Q ss_pred cccCCCcceeeeeecC
Q 036090 110 ATVPGFGWWPIKAYRP 125 (177)
Q Consensus 110 aavPgFgWWPIKAYRP 125 (177)
|-+-||+|||-++..|
T Consensus 15 aK~~gyP~WPa~V~~p 30 (109)
T 1h3z_A 15 TKMSGFPWWPSMVVTE 30 (109)
T ss_dssp EEETTEEEEEEEECCG
T ss_pred EEeCCcCCCCEEEccc
Confidence 5678999999999865
No 10
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=45.38 E-value=6.9 Score=28.15 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=14.4
Q ss_pred ccccCCCcceeeeeecC
Q 036090 109 IATVPGFGWWPIKAYRP 125 (177)
Q Consensus 109 iaavPgFgWWPIKAYRP 125 (177)
.|-+-||+|||-++..+
T Consensus 27 waK~kGyP~WPa~V~~~ 43 (110)
T 1ri0_A 27 FAKMKGYPHWPARIDEM 43 (110)
T ss_dssp EEEETTEEEEEEEEECC
T ss_pred EEEeCCCCCCCEEEecc
Confidence 46688999999999875
No 11
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=44.83 E-value=8.7 Score=29.72 Aligned_cols=17 Identities=29% Similarity=0.815 Sum_probs=14.6
Q ss_pred cccCCCcceeeeeecCC
Q 036090 110 ATVPGFGWWPIKAYRPC 126 (177)
Q Consensus 110 aavPgFgWWPIKAYRPC 126 (177)
|=|-||+|||-+++.|=
T Consensus 25 aKvkG~PwWPa~V~~~~ 41 (154)
T 3llr_A 25 GKLRGFSWWPGRIVSWW 41 (154)
T ss_dssp ECCTTSCCEEEEEECGG
T ss_pred EecCCCCCCCEEEeccc
Confidence 66889999999999863
No 12
>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}
Probab=42.42 E-value=6.7 Score=32.05 Aligned_cols=31 Identities=35% Similarity=0.716 Sum_probs=18.3
Q ss_pred CCC-CCCchhhhhccCCCccceeccccccCC-Ccc
Q 036090 85 RGC-KVCGKEELEKGCNGEGTIQGGIATVPG-FGW 117 (177)
Q Consensus 85 ~gC-~~CG~ee~~~GCnG~GRIqGGiaavPg-FgW 117 (177)
..| +.||+..... +...||.||.-|-+| |+|
T Consensus 84 p~C~p~CG~p~~~~--~~~~RIvGG~~a~~g~~Pw 116 (347)
T 4f4o_C 84 PECEAVCGKPKNPV--DQVQRIMGGSLDAKGSFPW 116 (347)
T ss_dssp CEEEECCSCCSSCC-------CCSCCBCCSCCCTT
T ss_pred CCccCCCCCCCCCC--CCCCeEECCEECCCCCCCc
Confidence 345 5699865422 457899999999887 565
No 13
>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Probab=40.21 E-value=8.5 Score=31.28 Aligned_cols=27 Identities=33% Similarity=0.697 Sum_probs=17.3
Q ss_pred CCCCCchhhhhccCCCccceeccccccCC-Ccc
Q 036090 86 GCKVCGKEELEKGCNGEGTIQGGIATVPG-FGW 117 (177)
Q Consensus 86 gC~~CG~ee~~~GCnG~GRIqGGiaavPg-FgW 117 (177)
.|..||+.. ....||.||.-+.++ |+|
T Consensus 104 ~c~~Cg~~~-----~~~~rIvgG~~a~~~~~Pw 131 (372)
T 1z8g_A 104 ICQDCGRRK-----LPVDRIVGGRDTSLGRWPW 131 (372)
T ss_dssp EECCCSCCC-----CC---CBSCEECCTTSSTT
T ss_pred eccccCCcC-----CCCCceECCEECCCCCCCc
Confidence 577888653 245799999988876 555
No 14
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=38.23 E-value=11 Score=28.64 Aligned_cols=17 Identities=29% Similarity=0.841 Sum_probs=14.4
Q ss_pred ccccCCCcceeeeeecC
Q 036090 109 IATVPGFGWWPIKAYRP 125 (177)
Q Consensus 109 iaavPgFgWWPIKAYRP 125 (177)
.|-|-||+|||-++..|
T Consensus 19 WaKvkGyPwWPa~V~~~ 35 (147)
T 1khc_A 19 WGKIKGFSWWPAMVVSW 35 (147)
T ss_dssp EEEETTTEEEEEEEECG
T ss_pred EEecCCcCCCCEEeccc
Confidence 46788999999999876
No 15
>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}
Probab=33.49 E-value=11 Score=28.18 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=14.9
Q ss_pred CCchhhhhccCCCccceeccccccCC-Ccc
Q 036090 89 VCGKEELEKGCNGEGTIQGGIATVPG-FGW 117 (177)
Q Consensus 89 ~CG~ee~~~GCnG~GRIqGGiaavPg-FgW 117 (177)
.||+.... ...||.||.-|-++ |+|
T Consensus 12 ~CG~~~~~----~~~rIvgG~~a~~~~~Pw 37 (276)
T 2vnt_A 12 QCGQKTLR----PRFKIIGGEFTTIENQPW 37 (276)
T ss_dssp CTTCCCC---------CCSSEECCGGGSTT
T ss_pred CCCCcCCC----CCCcEECCEECCCCCCCc
Confidence 48876443 46899999888776 666
No 16
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A
Probab=26.15 E-value=22 Score=26.45 Aligned_cols=28 Identities=32% Similarity=0.748 Sum_probs=17.8
Q ss_pred CCchhhhhccCCCccceeccccccCC-Ccc
Q 036090 89 VCGKEELEKGCNGEGTIQGGIATVPG-FGW 117 (177)
Q Consensus 89 ~CG~ee~~~GCnG~GRIqGGiaavPg-FgW 117 (177)
.||+...+.. ...+||.||.-+.|+ |+|
T Consensus 3 ~cg~~~~~~~-~~~~rIvgG~~a~~~~~Pw 31 (247)
T 1ddj_A 3 DCGKPQVEPK-KCPGRVVGGCVAHPHSWPW 31 (247)
T ss_dssp CTTCCSSCCC-CCCTTCTTCEECCTTSSTT
T ss_pred ccCCCCCCCc-ccCCCcCCCEECCCCCCCc
Confidence 3665543221 124799999999887 666
No 17
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2
Probab=24.69 E-value=24 Score=26.27 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=13.9
Q ss_pred CccceeccccccCC-Ccce
Q 036090 101 GEGTIQGGIATVPG-FGWW 118 (177)
Q Consensus 101 G~GRIqGGiaavPg-FgWW 118 (177)
-+.||.||.-+.|+ |+|-
T Consensus 10 ~~~rIvgG~~a~~~~~Pw~ 28 (251)
T 1pyt_D 10 LSARVVGGEDAIPHSWPWQ 28 (251)
T ss_dssp SSSSCCSSCCCCTTSSTTE
T ss_pred cCCccCCCEECCCCCCCce
Confidence 35799999988877 5663
No 18
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}
Probab=24.65 E-value=30 Score=26.13 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=17.1
Q ss_pred CCchhhhhccCCCccceeccccccCC-Ccc
Q 036090 89 VCGKEELEKGCNGEGTIQGGIATVPG-FGW 117 (177)
Q Consensus 89 ~CG~ee~~~GCnG~GRIqGGiaavPg-FgW 117 (177)
.||.. .-+.||.||.-|.|+ |+|
T Consensus 13 ~CG~~------~~~~rIvgG~~a~~~~~Pw 36 (278)
T 2olg_A 13 DCGYQ------VEADKILNGDDTVPEEFPW 36 (278)
T ss_dssp SCSCC------CCCCCSCCSSBCCTTSSTT
T ss_pred HhCCC------CCCCceECCEECCCCCCCc
Confidence 67764 236899999999876 565
No 19
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1
Probab=24.22 E-value=18 Score=28.41 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=17.4
Q ss_pred CCC-CCCchhhhhccCCCccceeccccccCC-Ccc
Q 036090 85 RGC-KVCGKEELEKGCNGEGTIQGGIATVPG-FGW 117 (177)
Q Consensus 85 ~gC-~~CG~ee~~~GCnG~GRIqGGiaavPg-FgW 117 (177)
..| +.||+..... ....||.||.-|.++ |+|
T Consensus 64 ~~c~~~CG~~~~~~--~~~~rIvgG~~a~~~~~Pw 96 (333)
T 1elv_A 64 PKCVPVCGVPREPF--EEKQRIIGGSDADIKNFPW 96 (333)
T ss_dssp CCEEECCSCCSSCC-------CBTCEECCGGGSTT
T ss_pred ccccCCcCCCCCcc--cccceeecCcccCCCCcCe
Confidence 445 3788764332 456899999888766 555
No 20
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=23.90 E-value=23 Score=21.65 Aligned_cols=12 Identities=50% Similarity=1.215 Sum_probs=10.0
Q ss_pred ccCCCccceecc
Q 036090 97 KGCNGEGTIQGG 108 (177)
Q Consensus 97 ~GCnG~GRIqGG 108 (177)
.||+|.|-|.|-
T Consensus 7 pGC~g~GH~~g~ 18 (31)
T 2jx1_A 7 PGCDGSGHITGN 18 (31)
T ss_dssp TTCCSSCCSSSS
T ss_pred CCccccceeccc
Confidence 589999999873
Done!