BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036092
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 284 bits (726), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 140/260 (53%), Positives = 171/260 (65%), Gaps = 4/260 (1%)
Query: 30 FYQDFDIIWGIDKVRILNDGEVLNLYLGKDTGSGFQSKNEYLFGKIDMQFKLVPGNSAGT 89
F +++ W D ++ N G + L+L K TG+GFQSK YLFG MQ KLVPG+SAGT
Sbjct: 17 FGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGT 76
Query: 90 VTSYYLSSQGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDPTSDFHTY 149
VT++YLSSQ S DEIDFEFLGN +G PYI TNV T GKGDREQ+ Y WFDPT +FH Y
Sbjct: 77 VTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYY 136
Query: 150 SILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNADDWATRGGLVKTDW 209
S+LWN IVF VD PIR FKN + + + +P NQPM+I+SSLWNADDWATRGGL KTDW
Sbjct: 137 SVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDW 196
Query: 210 TKAPFTASCRNFNAKTCIRYPAGXXXXXXXXXXXXXXXWMKIDELDETSREKLKWVQKNY 269
+KAPF AS R+F+ C A + +LD +L WV++ Y
Sbjct: 197 SKAPFIASYRSFHIDGC---EASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKY 253
Query: 270 MIYNYCTDTKRFPKGLPLEC 289
IYNYCTD R+P +P EC
Sbjct: 254 TIYNYCTDRSRYP-SMPPEC 272
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 127/254 (50%), Gaps = 17/254 (6%)
Query: 30 FYQDFDIIWGIDKVRILNDGEVLNLYLGKDTGSGFQSKNEYLFGKIDMQFKLVPGNSAGT 89
F Q + +WG R+ D L ++L +GSGF+S N Y G KL G +AG
Sbjct: 43 FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 100
Query: 90 VTSYYLSSQG---STWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDPTSDF 146
+TS+YLS+ DEID EFLG + G PY TNV +G GDRE + + WFDPT D+
Sbjct: 101 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDY 160
Query: 147 HTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNADDWATRGGLVK 206
H Y+I W P I+F+VD PIR + P +P+ ++ S+W+A WAT G K
Sbjct: 161 HNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATENGKYK 217
Query: 207 TDWTKAPFTASCRNFNAKTCIRYPAGXXXXXXXXXXXXXXXWMKIDELDETSREKLKWVQ 266
D+ PF +F +C A +L + ++WVQ
Sbjct: 218 ADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVS---------PYGQLSQQQVAAMEWVQ 268
Query: 267 KNYMIYNYCTDTKR 280
KNYM+YNYC D R
Sbjct: 269 KNYMVYNYCDDPTR 282
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 173 bits (439), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 127/254 (50%), Gaps = 17/254 (6%)
Query: 30 FYQDFDIIWGIDKVRILNDGEVLNLYLGKDTGSGFQSKNEYLFGKIDMQFKLVPGNSAGT 89
F Q + +WG R+ D L ++L +GSGF+S N Y G KL G +AG
Sbjct: 20 FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 77
Query: 90 VTSYYLSSQG---STWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDPTSDF 146
+TS+YLS+ DEID EFLG + G PY TNV +G GDRE + + WFDPT D+
Sbjct: 78 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDY 137
Query: 147 HTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNADDWATRGGLVK 206
H Y+I W P I+F+VD PIR + P +P+ ++ S+W+A WAT G K
Sbjct: 138 HNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATENGKYK 194
Query: 207 TDWTKAPFTASCRNFNAKTCIRYPAGXXXXXXXXXXXXXXXWMKIDELDETSREKLKWVQ 266
D+ PF +F +C A +L + ++WVQ
Sbjct: 195 ADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVS---------PYGQLSQQQVAAMEWVQ 245
Query: 267 KNYMIYNYCTDTKR 280
KNYM+YNYC D R
Sbjct: 246 KNYMVYNYCDDPTR 259
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 127/259 (49%), Gaps = 22/259 (8%)
Query: 30 FYQDFDIIWGIDKVRILNDGEVLNLYLGKDTGSGFQSKNEYLFGKIDMQFKLVPGNSAGT 89
F Q + +WG R+ D L ++L +GSGF+S N Y G KL G +AG
Sbjct: 19 FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 76
Query: 90 VTSYYLSSQG---STWDEIDFEFLGNLSGDPYIFHTNVITQGKGD-----REQQFYPWFD 141
+TS+YLS+ DEID EFLG + G PY TNV +G GD RE + + WFD
Sbjct: 77 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFD 136
Query: 142 PTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNADDWATR 201
PT D+H Y+I W P I+F+VD PIR + P +PM ++ S+W+A WAT
Sbjct: 137 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPMWVYGSVWDASSWATE 193
Query: 202 GGLVKTDWTKAPFTASCRNFNAKTCIRYPAGXXXXXXXXXXXXXXXWMKIDELDETSREK 261
G K D+ PF +F +C A +L +
Sbjct: 194 NGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVS---------PYGQLSQQQVAA 244
Query: 262 LKWVQKNYMIYNYCTDTKR 280
++WVQKNYM+YNYC D R
Sbjct: 245 MEWVQKNYMVYNYCDDPTR 263
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 127/259 (49%), Gaps = 22/259 (8%)
Query: 30 FYQDFDIIWGIDKVRILNDGEVLNLYLGKDTGSGFQSKNEYLFGKIDMQFKLVPGNSAGT 89
F Q + +WG R+ D L ++L +GSGF+S N Y G KL G +AG
Sbjct: 22 FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 79
Query: 90 VTSYYLSSQG---STWDEIDFEFLGNLSGDPYIFHTNVITQGKGD-----REQQFYPWFD 141
+TS+YLS+ DEID EFLG + G PY TNV +G GD RE + + WFD
Sbjct: 80 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFD 139
Query: 142 PTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNADDWATR 201
PT D+H Y+I W P I+F+VD PIR + P +P+ ++ S+W+A WAT
Sbjct: 140 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATE 196
Query: 202 GGLVKTDWTKAPFTASCRNFNAKTCIRYPAGXXXXXXXXXXXXXXXWMKIDELDETSREK 261
G K D+ PF +F +C A +L +
Sbjct: 197 NGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVS---------PYGQLSQQQVAA 247
Query: 262 LKWVQKNYMIYNYCTDTKR 280
++WVQKNYM+YNYC D R
Sbjct: 248 MEWVQKNYMVYNYCDDPTR 266
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 83/176 (47%), Gaps = 24/176 (13%)
Query: 34 FDIIWGIDKVRILNDGEVLNLYLGKDTGSGF-----QSKNEYLFGKIDMQFKLVPGNSAG 88
F+ W + V NDG+ L L L + F +S N Y +G ++ K P + G
Sbjct: 28 FNCTWRANNVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTG 84
Query: 89 TVTSYYL---SSQGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDPTSD 145
V+S++ + G+ WDEID EFLG D N T G G E+ FD +
Sbjct: 85 IVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKG 141
Query: 146 FHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNA---DDW 198
FHTY+ W P I +YVDG K+ + NIP + P +I +LWN DDW
Sbjct: 142 FHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 190
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 83/176 (47%), Gaps = 24/176 (13%)
Query: 34 FDIIWGIDKVRILNDGEVLNLYLGKDTGSGF-----QSKNEYLFGKIDMQFKLVPGNSAG 88
F+ W + V NDG+ L L L + F +S N Y +G ++ K P + G
Sbjct: 30 FNCTWRANNVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTG 86
Query: 89 TVTSYYL---SSQGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDPTSD 145
V+S++ + G+ WDEID EFLG D N T G G E+ FD +
Sbjct: 87 IVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKG 143
Query: 146 FHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNA---DDW 198
FHTY+ W P I +YVDG K+ + NIP + P +I +LWN DDW
Sbjct: 144 FHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 88/183 (48%), Gaps = 22/183 (12%)
Query: 26 PASNFYQDFDIIWGIDKVRILNDGEV-LNLY---LGKDTGSGFQSKNEYLFGKIDMQFKL 81
P +N+ W D V + + GE+ L+L K G G QS Y +G ++ K
Sbjct: 9 PFNNYNTGLWQKWAFDHVSMTSLGEMRLSLTSPSYNKFDGGGNQSVQTYGYGLYEVNMK- 67
Query: 82 VPGNSAGTVTSYYLSS---QGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYP 138
P + G V+++Y S+ G+ WDEID EFLG D N T G G+ E+
Sbjct: 68 -PAKNVGIVSAFYTSTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGVGNHEKIVNL 123
Query: 139 WFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLW---NA 195
FD + +HTY+ W P +I +YVDG + K+ + IP P +I+ SLW
Sbjct: 124 GFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQIP---QTPGKIYMSLWAGAGV 176
Query: 196 DDW 198
D+W
Sbjct: 177 DEW 179
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 24/176 (13%)
Query: 34 FDIIWGIDKVRILNDGEVLNLYLGKDTGSGF-----QSKNEYLFGKIDMQFKLVPGNSAG 88
F+ W + V NDG+ L L L + F +S N Y +G ++ K P + G
Sbjct: 30 FNCTWRANNVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTG 86
Query: 89 TVTSYYL---SSQGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDPTSD 145
V+S++ + G+ WD+ID +FLG D N T G G E+ FD +
Sbjct: 87 IVSSFFTYTGPAHGTQWDQIDIQFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKG 143
Query: 146 FHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNA---DDW 198
FHTY+ W P I +YVDG K+ + NIP + P +I +LWN DDW
Sbjct: 144 FHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 18/141 (12%)
Query: 64 FQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYL---SSQGSTWDEIDFEFLGNLSGDPYIF 120
++S N Y +G ++ K P + G V+S++ + G+ WDEID EFLG D
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 121 HTNVITQGKGDREQQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPY 180
N T G G E+ FD + FHTY+ W P I +YVDG K+ + NIP
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 181 PKNQPMRIHSSLWNA---DDW 198
+ P +I +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 18/141 (12%)
Query: 64 FQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYL---SSQGSTWDEIDFEFLGNLSGDPYIF 120
++S N Y +G ++ K P + G V+S++ + G+ WDEID EFLG D
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 121 HTNVITQGKGDREQQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPY 180
N T G G E+ FD + FHTY+ W P I +YVDG K+ + NIP
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 181 PKNQPMRIHSSLWNA---DDW 198
+ P +I +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 18/141 (12%)
Query: 64 FQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYL---SSQGSTWDEIDFEFLGNLSGDPYIF 120
++S N Y +G ++ K P + G V+S++ + G+ WDEID EFLG D
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 121 HTNVITQGKGDREQQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPY 180
N T G G E+ FD + FHTY+ W P I +YVDG K+ + NIP
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 181 PKNQPMRIHSSLWNA---DDW 198
+ P +I +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 24/176 (13%)
Query: 34 FDIIWGIDKVRILNDGEV-LNL----YLGKDTGSGFQSKNEYLFGKIDMQFKLVPGNSAG 88
F+ W + V + + GE+ L+L Y D G +S Y +G ++ K P + G
Sbjct: 30 FNCTWRANNVSMTSLGEMRLSLTSPSYNKFDCGEN-RSVQTYGYGLYEVNMK--PAKNVG 86
Query: 89 TVTSYYL---SSQGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDPTSD 145
V+S++ + G+ WDEID EFLG D N T G G+ E+ FD +
Sbjct: 87 IVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGVGNHEKIVNLGFDAANS 143
Query: 146 FHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNA---DDW 198
+HTY+ W P +I +YVDG + K+ + IP P +I +LWN D+W
Sbjct: 144 YHTYAFDWQPNSIKWYVDG----QLKHTATTQIP---QTPGKIMMNLWNGAGVDEW 192
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 34 FDIIWGIDKVRILNDGEVLNLYLGKDTGSGF---QSKNEYLFGKIDMQFKLVPGNSAGTV 90
F+ W + V + + GE + L L + F ++++ +G + ++ P + G V
Sbjct: 54 FNCTWRANNVSMTSLGE-MRLALTSPAYNKFDCGENRSVQTYGYGLYEVRMKPAKNTGIV 112
Query: 91 TSYYL---SSQGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDPTSDFH 147
+S++ + G+ WDEID EFLG D N T G G+ E+ FD + +H
Sbjct: 113 SSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGAGNHEKIVDLGFDAANAYH 169
Query: 148 TYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNA---DDW 198
TY+ W P +I +YVDG + K+ + IP P +I +LWN D+W
Sbjct: 170 TYAFDWQPNSIKWYVDG----QLKHTATNQIP---TTPGKIMMNLWNGTGVDEW 216
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 59/119 (49%), Gaps = 16/119 (13%)
Query: 86 SAGTVTSYYL---SSQGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDP 142
+ G V+S++ + G+ WDEID EFLG D N T G G E+ FD
Sbjct: 1 NTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDA 57
Query: 143 TSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNA---DDW 198
+ FHTY+ W P I +YVDG K+ + NIP + P +I +LWN DDW
Sbjct: 58 SKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 109
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 28/179 (15%)
Query: 34 FDIIWGIDKVRILNDGEVLNLYLGKD--------TGSGFQSKNEYLFGKIDMQFKLVPGN 85
F+ IW + L DG +LNL + D G+ +++++++ +G Q ++ P
Sbjct: 48 FNCIWRAYNIE-LKDG-ILNLSITDDMPSSSKPYAGAEYRTRDKFGYGL--YQVRMKPAK 103
Query: 86 SAGTVTSYYLSS---QGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDP 142
+ G V+S++ + G+ WDEID EFLG D N T G+ E + FD
Sbjct: 104 NPGIVSSFFTYTGPVHGTPWDEIDIEFLGK---DTTKVQFNYYTNSAGNHEYIYDLRFDA 160
Query: 143 TSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLW---NADDW 198
+ DFH Y+ W P I + VDG + ++ + I + P +I ++W D+W
Sbjct: 161 SEDFHIYAFNWQPNYIAWLVDGEEV--YRAYDDIPV-----HPGKIMLNIWPGIGVDEW 212
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 18/149 (12%)
Query: 60 TGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQGST------WDEIDFEFLGNL 113
+G+ + EY +GK + + K+ ++GTV+S +L GS W E+D E LG
Sbjct: 8 SGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 64
Query: 114 SGDPYIFHTNVITQGKG-DREQQFYPWFDPTSD--FHTYSILWNPKTIVFYVDGTPIREF 170
P F +N+IT G + + + P +D FHTY + W P + + VDG +R+
Sbjct: 65 --SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 122
Query: 171 KNLESINIPYPKNQPMRIHSSLWNADDWA 199
+ + N+ Q +R + LW+++ A
Sbjct: 123 EGGQVSNL--TGTQGLRFN--LWSSESAA 147
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 18/149 (12%)
Query: 60 TGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQGST------WDEIDFEFLGNL 113
+G+ + E +GK + + K+ ++GTV+S +L GS W E+D E LG
Sbjct: 5 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 114 SGDPYIFHTNVITQGKG-DREQQFYPWFDPTSD--FHTYSILWNPKTIVFYVDGTPIREF 170
+P F +N+IT G + + + P +D FHTY + W P + + VDG +R+
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 119
Query: 171 KNLESINIPYPKNQPMRIHSSLWNADDWA 199
+ + N+ Q +R + LW+++ A
Sbjct: 120 EGGQVSNL--TGTQGLRFN--LWSSESAA 144
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 18/146 (12%)
Query: 60 TGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQGST------WDEIDFEFLGNL 113
+G+ + E +GK + + K+ ++GTV+S +L GS W E+D E LG
Sbjct: 6 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 62
Query: 114 SGDPYIFHTNVITQGKGDREQQF-YPWFDPTSD--FHTYSILWNPKTIVFYVDGTPIREF 170
+P F +N+IT G ++ + P +D FHTY + W P + + VDG +R+
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 120
Query: 171 KNLESINIPYPKNQPMRIHSSLWNAD 196
+ + N+ Q +R + LW+++
Sbjct: 121 EGGQVSNL--TGTQGLRFN--LWSSE 142
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 18/146 (12%)
Query: 60 TGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQGST------WDEIDFEFLGNL 113
+G+ + E +GK + + K+ ++GTV+S L GS W E+D E LG
Sbjct: 6 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGK- 62
Query: 114 SGDPYIFHTNVITQGKG-DREQQFYPWFDPTSD--FHTYSILWNPKTIVFYVDGTPIREF 170
+P F +N+IT G + + + P +D FHTY + W P + + VDG +R+
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 120
Query: 171 KNLESINIPYPKNQPMRIHSSLWNAD 196
+ + N+ Q +R + LW+++
Sbjct: 121 EGGQVSNL--TGTQGLRFN--LWSSE 142
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 18/146 (12%)
Query: 60 TGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQGST------WDEIDFEFLGNL 113
+G+ + E +GK + + K ++GTV+S +L GS W E+D E LG
Sbjct: 8 SGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK- 64
Query: 114 SGDPYIFHTNVITQGKG-DREQQFYPWFDPTSD--FHTYSILWNPKTIVFYVDGTPIREF 170
+P F +N+IT G + + + P +D FHTY + W P + + VDG +R+
Sbjct: 65 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 122
Query: 171 KNLESINIPYPKNQPMRIHSSLWNAD 196
+ + N+ Q +R + LW+++
Sbjct: 123 EGGQVSNL--TGTQGLRFN--LWSSE 144
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 18/146 (12%)
Query: 60 TGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQGST------WDEIDFEFLGNL 113
+G+ + E +GK + + K ++GTV+S +L GS W E+D E LG
Sbjct: 5 SGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 114 SGDPYIFHTNVITQGKG-DREQQFYPWFDPTSD--FHTYSILWNPKTIVFYVDGTPIREF 170
+P F +N+IT G + + + P +D FHTY + W P + + VDG +R+
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 119
Query: 171 KNLESINIPYPKNQPMRIHSSLWNAD 196
+ + N+ Q +R + LW+++
Sbjct: 120 EGGQVSNL--TGTQGLRFN--LWSSE 141
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 130 GDREQQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIH 189
G E+ FD + FHTY+ W P I +YVDG K+ + NIP + P +I
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIM 54
Query: 190 SSLWNA---DDW 198
+LWN DDW
Sbjct: 55 MNLWNGTGVDDW 66
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 34 FDIIWGIDKVRILNDGEVLNLYLGKDTGSGF-----QSKNEYLFGKIDMQFKLVPGNSAG 88
F+ W + V NDG+ L L L + F +S N Y +G ++ K P + G
Sbjct: 118 FNCTWRANNVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTG 174
Query: 89 TVTSYYL---SSQGSTWDEIDFEFLG 111
V+S++ + G+ WDEID EFLG
Sbjct: 175 IVSSFFTYTGPAHGTQWDEIDIEFLG 200
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 104 EID-FEFLGNLSGDPYIFHTNVITQG----KGDREQQFYPWFDP--TSDFHTYSILWNPK 156
EID EFLG+ +P H V G KG P P T DFH + I+W P
Sbjct: 137 EIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPD 193
Query: 157 TIVFYVDGTPIREF--KNLESINIPYPKNQPMRI 188
I +YVDGT E + +E++ + ++P I
Sbjct: 194 KIKWYVDGTFYHEVTKEQVEAMGYEWVFDKPFYI 227
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 140 FDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNL 173
FDP +DFHTY + I +YVDG + E NL
Sbjct: 186 FDPRNDFHTYGVNVTKDKITWYVDGEIVGEKDNL 219
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 103 DEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDP-----TSDFHTYSILWNPKT 157
D + + + N+ +P++ H ++ G E + P FHT+++ W P +
Sbjct: 120 DSGEIDIMENIGREPHLVHGSLHGPGYFGGEPLTGSYMHPQGWSFADTFHTFAVDWRPGS 179
Query: 158 IVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNADDW 198
I + VDG + + + ++ P+ +QP + ++ DW
Sbjct: 180 ITWSVDGVAYQTYTSADTRGNPWVFDQPFFMILNVAVGGDW 220
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 144 SDFHTYSILWNPKTIVFYVDGT-----PIREFKNLESINIPYPKNQPMRIHSSLWNADDW 198
+DFH Y+I W P+ I ++VD + P N E+ +P +QP + ++ W
Sbjct: 165 TDFHVYAIEWTPEEIRWFVDDSLYYRFPNERLTNPEADWRHWPFDQPFHLIMNIAVGGTW 224
Query: 199 ATRGGL 204
+ G+
Sbjct: 225 GGQQGV 230
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 141 DPTSDFHTYSILWNPKTIVFYVD 163
DPTS++H Y++ W P + FY D
Sbjct: 209 DPTSEYHIYAMEWTPTALKFYYD 231
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 65 QSKNEYLFGKIDMQFKLVPGNSAGTVTSYYL---SSQGSTW-DEIDFEFLGNLSGDPYIF 120
Q K + +G+I+ + ++ G G ++++ S G+ W + + + N+ +P+
Sbjct: 76 QGKYQPQYGRIEARIQIPRGQ--GIWPAFWMLGGSFPGTPWPSSGEIDIMENVGFEPHRV 133
Query: 121 HTNV----ITQGKGDREQQFYPWFDPTSD-FHTYSILWNPKTIVFYVDG 164
H V + G G +P +D FHT+++ W P I ++VDG
Sbjct: 134 HGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITWFVDG 182
>pdb|1XKS|A Chain A, The Crystal Structure Of The N-Terminal Domain Of Nup133
Reveals A Beta-Propeller Fold Common To Several
Nucleoporins
Length = 450
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 92 SYYLSSQGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKG------DREQQFYPWFDPTSD 145
S+ LSS GS + E G + H +++ QG+G + + P+SD
Sbjct: 155 SFILSSSGSQLIRLIPESSGKI-------HQHILPQGQGMLSGIGRKVSSLFGILSPSSD 207
Query: 146 FHTYSILWNPKTIVFY 161
S+LW+ + FY
Sbjct: 208 LTLSSVLWDRERSSFY 223
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 141 DPTSDFHTYSILWNPKTIVFYVDG 164
D + DFH +SI W+ + +YVDG
Sbjct: 173 DFSEDFHIFSIEWDEDEVEWYVDG 196
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 141 DPTSDFHTYSILWNPKTIVFYVDG 164
D + DFH +SI W+ + +YVDG
Sbjct: 181 DFSEDFHIFSIEWDEDEVEWYVDG 204
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles
Of Various Metal Cation Binding Sites
Length = 1065
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 98 QGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDPTSDF 146
+ T D++ + L NL+ PY FH++ IT K + E YP D T+DF
Sbjct: 98 KAETGDKV-YVHLKNLASRPYTFHSHGITYYK-EHEGAIYP--DNTTDF 142
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 98 QGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDPTSDF 146
+ T D++ + L NL+ PY FH++ IT K + E YP D T+DF
Sbjct: 79 KAETGDKV-YVHLKNLASRPYTFHSHGITYYK-EHEGAIYP--DNTTDF 123
>pdb|1URX|A Chain A, Crystallographic Structure Of Beta-Agarase A In Complex
With Oligoagarose
Length = 282
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 94 YLSSQGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQF---YPWFDPTSDFHTYS 150
Y S +G TW F +LS +I + Q GD + PW S +H Y
Sbjct: 138 YGSDRGGTW----FAQRMHLSHHTFIRNPFTDYQPMGDATWYYNGGTPW---RSAYHRYG 190
Query: 151 ILW-NPKTIVFYVDGTPIREFKNLE 174
W +P T+ +Y+DG +R E
Sbjct: 191 CYWKDPFTLEYYIDGVKVRTVTRAE 215
>pdb|1O4Y|A Chain A, The Three-Dimensional Structure Of Beta-Agarase A From
Zobellia Galactanivorans
Length = 288
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 94 YLSSQGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQF---YPWFDPTSDFHTYS 150
Y S +G TW F +LS +I + Q GD + PW S +H Y
Sbjct: 138 YGSDRGGTW----FAQRMHLSHHTFIRNPFTDYQPMGDATWYYNGGTPW---RSAYHRYG 190
Query: 151 ILW-NPKTIVFYVDGTPIREFKNLE 174
W +P T+ +Y+DG +R E
Sbjct: 191 CYWKDPFTLEYYIDGVKVRTVTRAE 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,491,082
Number of Sequences: 62578
Number of extensions: 416238
Number of successful extensions: 732
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 41
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)