Query 036092
Match_columns 302
No_of_seqs 295 out of 1745
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 1.2E-82 2.7E-87 591.2 34.6 264 25-291 22-288 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 8E-81 1.7E-85 574.9 32.8 258 26-289 2-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 7.2E-44 1.6E-48 318.7 25.1 177 35-225 11-201 (203)
4 cd02175 GH16_lichenase lichena 100.0 2E-38 4.3E-43 284.6 24.7 173 35-224 26-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 1.2E-35 2.5E-40 259.3 19.4 174 32-222 3-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 2.6E-33 5.6E-38 248.8 23.5 171 35-223 24-209 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 4E-33 8.6E-38 257.4 22.5 178 39-224 56-257 (258)
8 cd08023 GH16_laminarinase_like 100.0 2.5E-32 5.4E-37 247.8 22.0 178 36-224 33-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 3.5E-30 7.6E-35 239.2 21.0 170 40-224 43-268 (269)
10 cd02182 GH16_Strep_laminarinas 100.0 2.8E-29 6E-34 232.0 21.3 181 37-224 42-258 (259)
11 cd02180 GH16_fungal_KRE6_gluca 100.0 2E-29 4.3E-34 236.9 19.0 182 36-224 36-294 (295)
12 cd08024 GH16_CCF Coelomic cyto 100.0 6.5E-28 1.4E-32 230.2 19.2 137 61-199 101-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 1.9E-27 4E-32 226.2 17.6 134 61-196 98-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 1.9E-24 4.1E-29 207.6 18.7 155 36-199 74-242 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 1.7E-19 3.6E-24 127.3 4.4 46 244-289 4-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.6 1.2E-14 2.6E-19 144.0 14.5 179 38-225 158-453 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.6 4.3E-14 9.4E-19 132.2 14.0 165 26-199 9-251 (293)
18 PF06439 DUF1080: Domain of Un 92.8 0.84 1.8E-05 39.0 9.0 113 46-173 28-156 (185)
19 PF13385 Laminin_G_3: Concanav 92.1 3.1 6.6E-05 33.4 11.2 66 143-226 84-149 (157)
20 PF07172 GRP: Glycine rich pro 90.5 0.21 4.4E-06 39.8 2.4 25 1-26 1-25 (95)
21 smart00560 LamGL LamG-like jel 89.2 11 0.00024 30.9 13.7 70 142-228 59-130 (133)
22 smart00210 TSPN Thrombospondin 87.2 9.9 0.00021 33.2 11.0 88 74-171 55-144 (184)
23 PF09264 Sial-lect-inser: Vibr 86.9 1.1 2.5E-05 39.8 4.7 104 54-170 11-120 (198)
24 PF10287 DUF2401: Putative TOS 81.6 7.2 0.00016 35.9 7.7 78 74-156 102-207 (235)
25 cd00110 LamG Laminin G domain; 78.4 34 0.00073 27.6 15.3 85 71-169 20-105 (151)
26 PF14099 Polysacc_lyase: Polys 74.4 31 0.00068 30.5 9.7 56 136-195 144-204 (224)
27 PF09224 DUF1961: Domain of un 70.7 13 0.00027 33.9 6.1 59 144-223 159-218 (218)
28 smart00159 PTX Pentraxin / C-r 68.8 84 0.0018 27.8 17.4 74 142-226 88-163 (206)
29 PRK02710 plastocyanin; Provisi 57.4 28 0.00061 28.2 5.4 18 37-55 43-60 (119)
30 cd00152 PTX Pentraxins are pla 57.2 1.4E+02 0.0029 26.3 11.0 73 142-225 88-162 (201)
31 smart00282 LamG Laminin G doma 49.3 69 0.0015 25.6 6.6 27 143-169 61-87 (135)
32 PF11948 DUF3465: Protein of u 48.6 65 0.0014 27.2 6.2 25 39-63 33-57 (131)
33 PF02973 Sialidase: Sialidase, 41.6 2.6E+02 0.0056 25.0 10.8 133 69-228 31-177 (190)
34 KOG1834 Calsyntenin [Extracell 41.1 29 0.00064 36.7 3.6 55 143-204 441-495 (952)
35 PF02210 Laminin_G_2: Laminin 39.0 1.8E+02 0.0038 22.3 8.9 75 142-224 52-126 (128)
36 PF13473 Cupredoxin_1: Cupredo 37.7 86 0.0019 24.4 5.2 23 37-60 31-53 (104)
37 PRK11372 lysozyme inhibitor; P 37.7 77 0.0017 25.7 4.9 7 91-97 80-86 (109)
38 cd00070 GLECT Galectin/galacto 31.7 1.2E+02 0.0025 24.6 5.3 49 123-172 56-105 (127)
39 cd06526 metazoan_ACD Alpha-cry 29.8 1E+02 0.0022 23.0 4.3 53 38-93 18-70 (83)
40 PF15240 Pro-rich: Proline-ric 28.4 39 0.00085 30.0 1.9 14 9-22 3-16 (179)
41 KOG4352 Fas-mediated apoptosis 27.8 1.1E+02 0.0024 26.6 4.4 36 134-170 93-128 (187)
42 cd06482 ACD_HspB10 Alpha cryst 27.5 1E+02 0.0022 23.9 3.9 54 39-92 20-73 (87)
43 KOG1691 emp24/gp25L/p24 family 25.6 5.2E+02 0.011 23.6 9.0 56 51-111 61-120 (210)
44 PF10916 DUF2712: Protein of u 25.1 3.3E+02 0.0073 23.3 6.8 9 87-95 75-83 (146)
45 cd06470 ACD_IbpA-B_like Alpha- 24.3 1.1E+02 0.0024 23.3 3.7 46 38-84 22-71 (90)
46 PF00337 Gal-bind_lectin: Gala 22.9 3.2E+02 0.0069 22.0 6.4 53 120-173 58-111 (133)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=1.2e-82 Score=591.20 Aligned_cols=264 Identities=53% Similarity=0.987 Sum_probs=242.1
Q ss_pred ccCCccccCCeeeecCCcEEEcCCCcEEEEEEcCCCCceEEEccceEeEEEEEEEEecCCCCCccEEEEEeecCCCCCCe
Q 036092 25 LPASNFYQDFDIIWGIDKVRILNDGEVLNLYLGKDTGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQGSTWDE 104 (302)
Q Consensus 25 ~~~~~f~~~f~~~w~~~nv~~~~~G~~L~L~ld~~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~v~AFwl~s~~~~~~E 104 (302)
.+..+|.++|.++|+.+|+.+.++|..|+|+|++.+|++|+||+.|+||+||+|||||+|+++|+||||||++.++.+||
T Consensus 22 ~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~~~~dE 101 (291)
T PLN03161 22 FVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTGSRHDE 101 (291)
T ss_pred cccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCCCCCCe
Confidence 34567999999999999999988888899999999999999999999999999999999888999999999997678999
Q ss_pred EEEecCCCCCCCCcEEEEEEEeCCCCCcceeecCCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeccccCCCCCCCCC
Q 036092 105 IDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQ 184 (302)
Q Consensus 105 IDiE~lGn~~g~p~~~qtNv~~~g~g~~e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~ 184 (302)
|||||||+++++++++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..+.+||+++
T Consensus 102 IDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~ 181 (291)
T PLN03161 102 IDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQ 181 (291)
T ss_pred EEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777788999878
Q ss_pred ceEEEEeeecCCCccCCCCccccCCCCCCeEEEEceEEEEeeeeCCCCCCCCCCCCCCCCCCccccc---ccCCHHHHHH
Q 036092 185 PMRIHSSLWNADDWATRGGLVKTDWTKAPFTASCRNFNAKTCIRYPAGPIISAPCPSNSSSSAWMKI---DELDETSREK 261 (302)
Q Consensus 185 Pm~l~lnlW~ggdWat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~~~~~~~~~~~c~~~~~~~~w~~~---~~l~~~~~~~ 261 (302)
||+|++|||+|++|||+||++||||+++||+|.|++|++++|.+++... ...|... ++..||+. +.|+.+|+++
T Consensus 182 pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~--~~~c~~~-~~~~~~~~~~~~~l~~~~~~~ 258 (291)
T PLN03161 182 GMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVS--IKQCADP-TPSNWWTSPSYSQLTNAQLTQ 258 (291)
T ss_pred ceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCC--ccccCCC-CccccccCccccCCCHHHHHH
Confidence 9999999999999999999999999999999999999999998765112 2468631 13568874 5899999999
Q ss_pred HHHHhhcCeEeecccCCCCCCCCCCccccc
Q 036092 262 LKWVQKNYMIYNYCTDTKRFPKGLPLECAV 291 (302)
Q Consensus 262 ~~~~~~~~~~y~yc~d~~r~~~~~p~ec~~ 291 (302)
|+|||+||||||||+|++|||.++||||.+
T Consensus 259 ~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~ 288 (291)
T PLN03161 259 MKKVRDNFMIYDYCKDTKRFNGVMPPECFK 288 (291)
T ss_pred HHHHHhCcEEEeccCCCCcCCCCcCcccCC
Confidence 999999999999999999999878999963
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=8e-81 Score=574.88 Aligned_cols=258 Identities=52% Similarity=1.044 Sum_probs=239.1
Q ss_pred cCCccccCCeeeecCCcEEEcCCCcEEEEEEcCCCCceEEEccceEeEEEEEEEEecCCCCCccEEEEEeecC-CCCCCe
Q 036092 26 PASNFYQDFDIIWGIDKVRILNDGEVLNLYLGKDTGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQ-GSTWDE 104 (302)
Q Consensus 26 ~~~~f~~~f~~~w~~~nv~~~~~G~~L~L~ld~~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~v~AFwl~s~-~~~~~E 104 (302)
.+.+|.++|.++|+++||++.++|+.|+|+||+.+|++|+||..|+||+||||||||+|+++|+||||||+++ ||.++|
T Consensus 2 ~~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~E 81 (263)
T cd02176 2 VAASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDE 81 (263)
T ss_pred CcCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCe
Confidence 3567999999999999999988888899999999999999999999999999999999888999999999998 589999
Q ss_pred EEEecCCCCCCCCcEEEEEEEeCCCCCcceeecCCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeccccCCCCCCCCC
Q 036092 105 IDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQ 184 (302)
Q Consensus 105 IDiE~lGn~~g~p~~~qtNv~~~g~g~~e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~ 184 (302)
||||++|+.+|+|+++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..+.+||+++
T Consensus 82 ID~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~ 161 (263)
T cd02176 82 IDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQ 161 (263)
T ss_pred EEEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877788999889
Q ss_pred ceEEEEeeecCCCccCCCCccccCCCCCCeEEEEceEEEEeeeeCCCCCCCCCCCCCCCCCCccccc---ccCCHHHHHH
Q 036092 185 PMRIHSSLWNADDWATRGGLVKTDWTKAPFTASCRNFNAKTCIRYPAGPIISAPCPSNSSSSAWMKI---DELDETSREK 261 (302)
Q Consensus 185 Pm~l~lnlW~ggdWat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~~~~~~~~~~~c~~~~~~~~w~~~---~~l~~~~~~~ 261 (302)
||+|++|||+||+|||+||++|+||+++||+|.|++|+|++|.+++ + ...|... ....||+. ++|+.+|+++
T Consensus 162 Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~-~---~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 236 (263)
T cd02176 162 PMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDP-G---DSFSSCS-CTEDWWNGSTYQQLSANQQRA 236 (263)
T ss_pred eEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCC-C---CccccCC-CccccccccccccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999765 3 2345431 12568874 5899999999
Q ss_pred HHHHhhcCeEeecccCCCCCCCCCCccc
Q 036092 262 LKWVQKNYMIYNYCTDTKRFPKGLPLEC 289 (302)
Q Consensus 262 ~~~~~~~~~~y~yc~d~~r~~~~~p~ec 289 (302)
|+|||+||||||||+|++|||. +||||
T Consensus 237 ~~~~~~~~~~y~yC~d~~r~~~-~p~ec 263 (263)
T cd02176 237 MEWVRRNYMVYDYCDDRKRYPV-PPPEC 263 (263)
T ss_pred HHHHHHCCEEEecCCCCCcCCC-CcCCC
Confidence 9999999999999999999996 89999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=7.2e-44 Score=318.74 Aligned_cols=177 Identities=33% Similarity=0.610 Sum_probs=155.2
Q ss_pred eeeecCCcEEEcCCCcEEEEEEcCC-CCceEEEccceEeEEEEEEEEecCCCCCccEEEEEeecCCCCCCeEEEecCCCC
Q 036092 35 DIIWGIDKVRILNDGEVLNLYLGKD-TGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQGSTWDEIDFEFLGNL 113 (302)
Q Consensus 35 ~~~w~~~nv~~~~~G~~L~L~ld~~-sGs~i~Sk~~~~YG~~eariKlp~g~s~G~v~AFwl~s~~~~~~EIDiE~lGn~ 113 (302)
+.+...++|.+.++| |.|+|++. +|++|+|+++|+||+||||||+|.+ +|+||||||+++ .++|||||++|+
T Consensus 11 ~~~~~~~~~~~~~~~--~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G~- 83 (203)
T cd02183 11 DWTVTSGTVDYDDDG--ASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVGG- 83 (203)
T ss_pred ccEecCCcEeECCCe--EEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecCC-
Confidence 346678899996434 99999877 7999999999999999999999998 899999999998 689999999996
Q ss_pred CCCCcEEEEEEEeCCCC---CcceeecCCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEecccc-CCCCCCCCCceEEE
Q 036092 114 SGDPYIFHTNVITQGKG---DREQQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLES-INIPYPKNQPMRIH 189 (302)
Q Consensus 114 ~g~p~~~qtNv~~~g~g---~~e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~-~g~~~P~~~Pm~l~ 189 (302)
++..+|+|+|.+|.. ++++.+.+.++++++||+|+|+|+|++|+|||||+++|++++.+. .+..||. +||+|+
T Consensus 84 --~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~-~P~~l~ 160 (203)
T cd02183 84 --DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQ-TPMRLQ 160 (203)
T ss_pred --CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCC-CCcEEE
Confidence 567899999987654 455677788899999999999999999999999999999987542 3567996 999999
Q ss_pred EeeecCCC---------ccCCCCccccCCCCCCeEEEEceEEEEe
Q 036092 190 SSLWNADD---------WATRGGLVKTDWTKAPFTASCRNFNAKT 225 (302)
Q Consensus 190 lnlW~ggd---------Wat~GG~~~~d~~~~Pf~a~~~~~~v~~ 225 (302)
+|+|.||+ || ||. +||+.+||+|.|++|+|..
T Consensus 161 ln~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~~ 201 (203)
T cd02183 161 IGIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVTD 201 (203)
T ss_pred EEEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEEe
Confidence 99999985 99 884 6999999999999999864
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=2e-38 Score=284.64 Aligned_cols=173 Identities=33% Similarity=0.606 Sum_probs=147.7
Q ss_pred eeeecCCcEEEcCCCcEEEEEEcCC-------CCceEEEccceEeEEEEEEEEecCCCCCccEEEEEeecC---CCCCCe
Q 036092 35 DIIWGIDKVRILNDGEVLNLYLGKD-------TGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQ---GSTWDE 104 (302)
Q Consensus 35 ~~~w~~~nv~~~~~G~~L~L~ld~~-------sGs~i~Sk~~~~YG~~eariKlp~g~s~G~v~AFwl~s~---~~~~~E 104 (302)
..+|.++||++. +|. |+|++.+. ++++|.|+.+|+||+||+|||+|.+ +|+|+||||++. +..++|
T Consensus 26 ~~~~~~~nv~v~-~g~-L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~E 101 (212)
T cd02175 26 NCTWSADNVEFS-DGG-LALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDE 101 (212)
T ss_pred eeeEccccEEEE-CCe-EEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCE
Confidence 357889999996 665 99998543 3789999999999999999999987 899999999974 245799
Q ss_pred EEEecCCCCCCCCcEEEEEEEeCCCCCcceeecCCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeccccCCCCCCCCC
Q 036092 105 IDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQ 184 (302)
Q Consensus 105 IDiE~lGn~~g~p~~~qtNv~~~g~g~~e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~ 184 (302)
||||++|++ +..+++|+|.++.++.+..+.+.+++.++||+|+|+|+|++|+|||||++++++...+ ..+|. +
T Consensus 102 IDiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~-~ 174 (212)
T cd02175 102 IDIEFLGKD---TTKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPD-T 174 (212)
T ss_pred EEEEEccCC---CCEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCC-C
Confidence 999999974 4578999998877666667778889999999999999999999999999999997643 35887 9
Q ss_pred ceEEEEeeecCC---CccCCCCccccCCCCCCeEEEEceEEEE
Q 036092 185 PMRIHSSLWNAD---DWATRGGLVKTDWTKAPFTASCRNFNAK 224 (302)
Q Consensus 185 Pm~l~lnlW~gg---dWat~GG~~~~d~~~~Pf~a~~~~~~v~ 224 (302)
||+|++|+|.++ +|+ |. +|. ..|+.|+||+||+.
T Consensus 175 p~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 175 PGKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CcEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 999999999985 598 53 466 88999999999985
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=1.2e-35 Score=259.26 Aligned_cols=174 Identities=36% Similarity=0.651 Sum_probs=149.9
Q ss_pred cCCeeeecCCcEEEcCCCcEEEEEEcC-----CCCceEEEccceEeEEEEEEEEecCCCCCccEEEEEeecC--CCCCCe
Q 036092 32 QDFDIIWGIDKVRILNDGEVLNLYLGK-----DTGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQ--GSTWDE 104 (302)
Q Consensus 32 ~~f~~~w~~~nv~~~~~G~~L~L~ld~-----~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~v~AFwl~s~--~~~~~E 104 (302)
+++.++|.++||.+. +|..|+|++++ .++++|+|+..++||+||+|||++.+ +|+|+||||.+. |+.++|
T Consensus 3 ~~~~~~~~~~nv~~~-~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~E 79 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVE-DGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGGE 79 (185)
T ss_dssp CTEEEEETCCGEEEE-TTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTEE
T ss_pred CceEEeeCCCcEEEc-CCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchhh
Confidence 678899999999996 44449999977 57899999999999999999999887 899999999763 689999
Q ss_pred EEEecCCCCCCCCcEEEEEEEeCCCCCc--ceeecCCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeccccCCCCCCC
Q 036092 105 IDFEFLGNLSGDPYIFHTNVITQGKGDR--EQQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPK 182 (302)
Q Consensus 105 IDiE~lGn~~g~p~~~qtNv~~~g~g~~--e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~ 182 (302)
||||++|++ +..+++|+|..+.+.. +.++.+.+++..+||+|+|+|+|++|+|||||++++++......+.++|.
T Consensus 80 IDiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGND---PTQVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTS---TTEEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhcccc---ccceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 999999984 3469999999888765 56777888999999999999999999999999999999887654446887
Q ss_pred CCceEEEEeeecCCCccCCCCccccCCCCCCeEEEEceEE
Q 036092 183 NQPMRIHSSLWNADDWATRGGLVKTDWTKAPFTASCRNFN 222 (302)
Q Consensus 183 ~~Pm~l~lnlW~ggdWat~GG~~~~d~~~~Pf~a~~~~~~ 222 (302)
..||+|.+++|.+++|++..| .|+|||||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 789999999999999885444 57888876
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=2.6e-33 Score=248.79 Aligned_cols=171 Identities=35% Similarity=0.571 Sum_probs=143.6
Q ss_pred eeeecCCcEEEcCCCcEEEEEEcCC------CCceEEE-ccceEeEEEEEEEEecCCCCCccEEEEEeecCC---CCCCe
Q 036092 35 DIIWGIDKVRILNDGEVLNLYLGKD------TGSGFQS-KNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQG---STWDE 104 (302)
Q Consensus 35 ~~~w~~~nv~~~~~G~~L~L~ld~~------sGs~i~S-k~~~~YG~~eariKlp~g~s~G~v~AFwl~s~~---~~~~E 104 (302)
...|.++||.+.++|. |+|++.+. .+++|.| ++.|+||+||+|||++.+ .|+|+||||+++. +..+|
T Consensus 24 ~~~~~~~nv~~~~~G~-L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDGG-LTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCCe-EEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 3578899999975576 99988543 4689999 999999999999999987 8999999999973 67999
Q ss_pred EEEecCCCCCCCCcEEEEEEEeCCCC-----CcceeecCCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeccccCCCC
Q 036092 105 IDFEFLGNLSGDPYIFHTNVITQGKG-----DREQQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIP 179 (302)
Q Consensus 105 IDiE~lGn~~g~p~~~qtNv~~~g~g-----~~e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~ 179 (302)
||||++|++ +..+++++|..+.+ .....+.+.+++.++||+|+|+|+|++|+|||||++++++.+.
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------ 171 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------ 171 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------
Confidence 999999974 55788999876543 2334566667788999999999999999999999999998653
Q ss_pred CCCCCceEEEEeeecCCCccCCCCccccCCCCCCeEEEEceEEE
Q 036092 180 YPKNQPMRIHSSLWNADDWATRGGLVKTDWTKAPFTASCRNFNA 223 (302)
Q Consensus 180 ~P~~~Pm~l~lnlW~ggdWat~GG~~~~d~~~~Pf~a~~~~~~v 223 (302)
.|. +||+|+||+|.+++|+ +. .+....|..|+|++|+|
T Consensus 172 ~p~-~p~~i~ln~~~~~~~~--~~---~~~~~~~~~~~Vd~vrv 209 (210)
T cd00413 172 VPD-DPMNIILNLWSDGGWW--WG---GPPPGAPAYMEIDWVRV 209 (210)
T ss_pred CCC-CCcEEEEEEEECCCCc--cc---CCCCCCCcEEEEEEEEE
Confidence 676 9999999999999987 22 24567899999999997
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=4e-33 Score=257.44 Aligned_cols=178 Identities=23% Similarity=0.285 Sum_probs=136.1
Q ss_pred cCCcEEEcCCCcEEEEEEcCCC-----------CceEEEccceEeEEEEEEEEecCCCCCccEEEEEeecC-CCCCCeEE
Q 036092 39 GIDKVRILNDGEVLNLYLGKDT-----------GSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQ-GSTWDEID 106 (302)
Q Consensus 39 ~~~nv~~~~~G~~L~L~ld~~s-----------Gs~i~Sk~~~~YG~~eariKlp~g~s~G~v~AFwl~s~-~~~~~EID 106 (302)
.++||.+ .+|. |.|++.+.. +++|.||+.|+||+||||||+|.+ +.+|||||++. ++.++|||
T Consensus 56 ~~~nv~v-~~G~-L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~---~~~pAfW~~~~~~~~~gEID 130 (258)
T cd02178 56 SADNVSV-EDGN-LVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL---PMSSAFWLLSDTKDSTTEID 130 (258)
T ss_pred ccCCeEE-ECCE-EEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC---CccceEEEccCCCCCCCcEE
Confidence 3577877 4776 999885432 578999999999999999999976 35899999996 67899999
Q ss_pred E-ecCCCCC--CCCcEEEEEEEeCCCC-----Cc---ceeecCCCCCCCCcEEEEEEEc-CCcEEEEECCeeEEEEeccc
Q 036092 107 F-EFLGNLS--GDPYIFHTNVITQGKG-----DR---EQQFYPWFDPTSDFHTYSILWN-PKTIVFYVDGTPIREFKNLE 174 (302)
Q Consensus 107 i-E~lGn~~--g~p~~~qtNv~~~g~g-----~~---e~~~~l~fdp~~dfHtY~i~Wt-p~~I~fyVDG~~vr~~~~~~ 174 (302)
| |++|+.. ..+..+|+++|..+.+ .+ ...+...+++.++||+|+|+|+ |++|+|||||++++++++.+
T Consensus 131 I~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~ 210 (258)
T cd02178 131 ILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSE 210 (258)
T ss_pred hhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCcc
Confidence 7 9999753 2245788888753321 11 1234456677899999999999 99999999999999998754
Q ss_pred cCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCeEEEEceEEEE
Q 036092 175 SINIPYPKNQPMRIHSSLWNADDWATRGGLVKTDWTKAPFTASCRNFNAK 224 (302)
Q Consensus 175 ~~g~~~P~~~Pm~l~lnlW~ggdWat~GG~~~~d~~~~Pf~a~~~~~~v~ 224 (302)
. ...+|+++||+|+||++.|| |+...+.. ..-...|..|+||+|||.
T Consensus 211 ~-~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 211 I-TDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred c-CcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEEe
Confidence 3 33467779999999999988 98211121 122345999999999985
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=2.5e-32 Score=247.76 Aligned_cols=178 Identities=25% Similarity=0.425 Sum_probs=142.4
Q ss_pred eeecCCcEEEcCCCcEEEEEEcCC----------CCceEEE--ccceEeEEEEEEEEecCCCCCccEEEEEeecC-----
Q 036092 36 IIWGIDKVRILNDGEVLNLYLGKD----------TGSGFQS--KNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQ----- 98 (302)
Q Consensus 36 ~~w~~~nv~~~~~G~~L~L~ld~~----------sGs~i~S--k~~~~YG~~eariKlp~g~s~G~v~AFwl~s~----- 98 (302)
..+.++||.+. +|. |+|++.+. .+++|.| ++.|+||+||||||+|.+ +|++|||||+++
T Consensus 33 ~~~~~~nv~v~-~G~-L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYVE-DGN-LVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEEE-CCE-EEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 35678899874 776 99987532 2578999 899999999999999988 899999999985
Q ss_pred -CCCCCeEEE-ecCCCCCCCCcEEEEEEEeCCCC----CcceeecCCC-CCCCCcEEEEEEEcCCcEEEEECCeeEEEEe
Q 036092 99 -GSTWDEIDF-EFLGNLSGDPYIFHTNVITQGKG----DREQQFYPWF-DPTSDFHTYSILWNPKTIVFYVDGTPIREFK 171 (302)
Q Consensus 99 -~~~~~EIDi-E~lGn~~g~p~~~qtNv~~~g~g----~~e~~~~l~f-dp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 171 (302)
|+..+|||| |++|+. +..+++++|..+.. ..+..+.... ++.++||+|+|+|+|++|+|||||+++++++
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 467899998 999974 55789999977653 2234455554 7889999999999999999999999999998
Q ss_pred ccccCC-CCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCeEEEEceEEEE
Q 036092 172 NLESIN-IPYPKNQPMRIHSSLWNADDWATRGGLVKTDWTKAPFTASCRNFNAK 224 (302)
Q Consensus 172 ~~~~~g-~~~P~~~Pm~l~lnlW~ggdWat~GG~~~~d~~~~Pf~a~~~~~~v~ 224 (302)
+..... ..+|.++||+|+||++.+++|+ |.. ..-...|..|.||+|||.
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRVY 235 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEEC
Confidence 754321 2345569999999999999998 431 234567999999999983
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=3.5e-30 Score=239.21 Aligned_cols=170 Identities=27% Similarity=0.352 Sum_probs=126.9
Q ss_pred CCcEEEcCCCcEEEEEEcCC-------------------CCceEEEccceEeEEEEEEEEecC-CCCCccEEEEEeecC-
Q 036092 40 IDKVRILNDGEVLNLYLGKD-------------------TGSGFQSKNEYLFGKIDMQFKLVP-GNSAGTVTSYYLSSQ- 98 (302)
Q Consensus 40 ~~nv~~~~~G~~L~L~ld~~-------------------sGs~i~Sk~~~~YG~~eariKlp~-g~s~G~v~AFwl~s~- 98 (302)
++||.+ .||. |+|++.+. ++++|.||.+|+||+||||||+++ + .|+||||||+++
T Consensus 43 ~~Nv~v-~dG~-L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI-SNGI-LELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE-eCCE-EEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 467776 6887 99988442 356899999999999999999865 5 799999999974
Q ss_pred --------CCCCCeEEE-ecCCCC---CCCCcE----EEEEEEeCCCCC--c--------ceeecCCCCCCCCcEEEEEE
Q 036092 99 --------GSTWDEIDF-EFLGNL---SGDPYI----FHTNVITQGKGD--R--------EQQFYPWFDPTSDFHTYSIL 152 (302)
Q Consensus 99 --------~~~~~EIDi-E~lGn~---~g~p~~----~qtNv~~~g~g~--~--------e~~~~l~fdp~~dfHtY~i~ 152 (302)
||.++|||| |..|.. .++++. +|++++.++.+. + ...+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 688999999 777643 122333 455554454331 1 12456778999999999999
Q ss_pred EcCCcEEEEECCeeEEEEeccccCCCCCCCCCceEEEEeeecCC---------CccCCCCccccCCCCCCeEEEEceEEE
Q 036092 153 WNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNAD---------DWATRGGLVKTDWTKAPFTASCRNFNA 223 (302)
Q Consensus 153 Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg---------dWat~GG~~~~d~~~~Pf~a~~~~~~v 223 (302)
|+|++|+|||||++++++.+. +. ++||++.+++-... .|+ |+. .+.+..|-.|+||+|||
T Consensus 199 W~~~~i~~yvDg~~~~~~~~~------~w-~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv 267 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPNK------YW-HRPMNVTLSLGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRV 267 (269)
T ss_pred EeCCEEEEEECCEEEEEEcCC------cc-ccccEEeeccccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEE
Confidence 999999999999999998642 33 38888888874432 244 443 24567899999999998
Q ss_pred E
Q 036092 224 K 224 (302)
Q Consensus 224 ~ 224 (302)
.
T Consensus 268 ~ 268 (269)
T cd02177 268 W 268 (269)
T ss_pred e
Confidence 5
No 10
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.97 E-value=2.8e-29 Score=231.96 Aligned_cols=181 Identities=14% Similarity=0.164 Sum_probs=127.0
Q ss_pred eecCCcEEEcCCCcEEEEEEcCC-----CCceEEEccce--Ee----EEEEEEEEecCCC---CCccEEEEEeecC----
Q 036092 37 IWGIDKVRILNDGEVLNLYLGKD-----TGSGFQSKNEY--LF----GKIDMQFKLVPGN---SAGTVTSYYLSSQ---- 98 (302)
Q Consensus 37 ~w~~~nv~~~~~G~~L~L~ld~~-----sGs~i~Sk~~~--~Y----G~~eariKlp~g~---s~G~v~AFwl~s~---- 98 (302)
+++++|+.+..+|. |.|++.+. +.++|.|+.++ .| |+||||||+|.+. ..|+||||||++.
T Consensus 42 ~~~~~n~~v~~dG~-L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNGT-LQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCCe-EEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 45678998855887 99988544 34789997654 33 4999999999741 3699999999984
Q ss_pred ----CCCCCeEEE-ecCCCCCCCCcEEEEEEEeCC-CCC--ccee-ec-CCCCCCCCcEEEEEEEcC-----CcEEEEEC
Q 036092 99 ----GSTWDEIDF-EFLGNLSGDPYIFHTNVITQG-KGD--REQQ-FY-PWFDPTSDFHTYSILWNP-----KTIVFYVD 163 (302)
Q Consensus 99 ----~~~~~EIDi-E~lGn~~g~p~~~qtNv~~~g-~g~--~e~~-~~-l~fdp~~dfHtY~i~Wtp-----~~I~fyVD 163 (302)
||..+|||| |..|. ++...+ ++|... .++ .+.. .. ....+.++||+|+|+|+| ++|+||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~---~~~~~~-t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvD 196 (259)
T cd02182 121 NGTNWPACGELDIMENVNG---LSTGYG-TLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLD 196 (259)
T ss_pred CCCCCCccceeeeeeccCC---CCceEE-EEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEEC
Confidence 688899998 99985 344444 455422 111 1111 10 011245799999999997 99999999
Q ss_pred CeeEEEEecccc---CCCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCeEEEEceEEEE
Q 036092 164 GTPIREFKNLES---INIPYPKNQPMRIHSSLWNADDWATRGGLVKTDWTKAPFTASCRNFNAK 224 (302)
Q Consensus 164 G~~vr~~~~~~~---~g~~~P~~~Pm~l~lnlW~ggdWat~GG~~~~d~~~~Pf~a~~~~~~v~ 224 (302)
|+++++++.... ...+.|.++||+|+||++.||+|+ |..-...-...|..|+||+|||.
T Consensus 197 G~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~--~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 197 GVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP--GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred CEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC--CCCCcccccCCCceEEEEEEEEe
Confidence 999999976422 112234469999999999999997 32111112346899999999985
No 11
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.97 E-value=2e-29 Score=236.90 Aligned_cols=182 Identities=19% Similarity=0.168 Sum_probs=127.6
Q ss_pred eeecCCcEEEcCCCcEEEEEEcCC-------CCceEEE--ccceEeEEEEEEEEecCC-CCCccEEEEEeecC-------
Q 036092 36 IIWGIDKVRILNDGEVLNLYLGKD-------TGSGFQS--KNEYLFGKIDMQFKLVPG-NSAGTVTSYYLSSQ------- 98 (302)
Q Consensus 36 ~~w~~~nv~~~~~G~~L~L~ld~~-------sGs~i~S--k~~~~YG~~eariKlp~g-~s~G~v~AFwl~s~------- 98 (302)
..+.++|+.+ .+|. |+|++.+. +.++|.| |+.|+||+||||||||.+ ...|+||||||+++
T Consensus 36 q~Y~~~nv~v-~~G~-L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~ 113 (295)
T cd02180 36 EWYDPDAVTT-INGS-LRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYL 113 (295)
T ss_pred EEecCcCeEe-cCCe-EEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeeccccccccccc
Confidence 3566788877 5787 99988542 4578999 788999999999999973 23799999999983
Q ss_pred ------CCC------CCeEEE-ecCCCCC-CCCcE---E----------------EEEEEeC------C-CCCccee---
Q 036092 99 ------GST------WDEIDF-EFLGNLS-GDPYI---F----------------HTNVITQ------G-KGDREQQ--- 135 (302)
Q Consensus 99 ------~~~------~~EIDi-E~lGn~~-g~p~~---~----------------qtNv~~~------g-~g~~e~~--- 135 (302)
||. .+|||| |.+|... +.... + +..+|.. . .++..++
T Consensus 114 ~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 193 (295)
T cd02180 114 ATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAIS 193 (295)
T ss_pred ccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCccccccc
Confidence 675 499998 9998532 11111 1 1112211 0 0111110
Q ss_pred --ecCCC----CCCCCcEEEEEEEcC-----CcEEEEECCeeEEEEecccc--C----CCCCCCCCceEEEEeeecCCCc
Q 036092 136 --FYPWF----DPTSDFHTYSILWNP-----KTIVFYVDGTPIREFKNLES--I----NIPYPKNQPMRIHSSLWNADDW 198 (302)
Q Consensus 136 --~~l~f----dp~~dfHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~--~----g~~~P~~~Pm~l~lnlW~ggdW 198 (302)
..+.. ...++||+|+|+|+| ++|+|||||+++++++.... . ..++|. +||+|+||+++||+|
T Consensus 194 ~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~~-~P~ylILNlAvGg~w 272 (295)
T cd02180 194 CVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIPE-EPMYIILNLGISSNF 272 (295)
T ss_pred cccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccCC-CCeEEEEEEEecccc
Confidence 01111 135789999999999 89999999999999986431 1 124565 999999999999999
Q ss_pred cCCCCccccCCCCCCeEEEEceEEEE
Q 036092 199 ATRGGLVKTDWTKAPFTASCRNFNAK 224 (302)
Q Consensus 199 at~GG~~~~d~~~~Pf~a~~~~~~v~ 224 (302)
+ |. +.+-...|..|+||+|||.
T Consensus 273 ~---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 273 Q---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred C---CC-CcccCCCCCEEEEEEEEEE
Confidence 7 42 2344567999999999995
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=6.5e-28 Score=230.22 Aligned_cols=137 Identities=19% Similarity=0.214 Sum_probs=104.5
Q ss_pred CceEEE--ccceEeEEEEEEEEecCCCCCccEEEEEeecC------CCCCCeEEE-ecCCCCCCCC-------cEEEEEE
Q 036092 61 GSGFQS--KNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQ------GSTWDEIDF-EFLGNLSGDP-------YIFHTNV 124 (302)
Q Consensus 61 Gs~i~S--k~~~~YG~~eariKlp~g~s~G~v~AFwl~s~------~~~~~EIDi-E~lGn~~g~p-------~~~qtNv 124 (302)
.++|.| |+.|+|||||+|||||.| .|+||||||++. ||..+|||| |..|+....+ ..++.++
T Consensus 101 Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tl 178 (330)
T cd08024 101 SARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTL 178 (330)
T ss_pred EEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEE
Confidence 467888 688999999999999999 799999999984 788999998 9999753221 2455666
Q ss_pred EeCCCCC----cc---eeecCCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeccc-------------------cCCC
Q 036092 125 ITQGKGD----RE---QQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLE-------------------SINI 178 (302)
Q Consensus 125 ~~~g~g~----~e---~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~-------------------~~g~ 178 (302)
|...... +. .......+..++||+|+|+|+|++|+|||||++++++.... ..+.
T Consensus 179 H~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~ 258 (330)
T cd08024 179 HWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGK 258 (330)
T ss_pred EeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCc
Confidence 6432111 11 11122345678999999999999999999999999998521 0124
Q ss_pred CCCCCCceEEEEeeecCCCcc
Q 036092 179 PYPKNQPMRIHSSLWNADDWA 199 (302)
Q Consensus 179 ~~P~~~Pm~l~lnlW~ggdWa 199 (302)
..|+++|++|+|||++||.|.
T Consensus 259 ~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 259 MAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCCCEEEEEEEEecCCCC
Confidence 468899999999999999884
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.95 E-value=1.9e-27 Score=226.21 Aligned_cols=134 Identities=16% Similarity=0.210 Sum_probs=97.8
Q ss_pred CceEEE--ccceEeEEEEEEEEecCCCCCccEEEEEeecC------C-CCCCeEEE-ecCCCCCCC---C----cEEEEE
Q 036092 61 GSGFQS--KNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQ------G-STWDEIDF-EFLGNLSGD---P----YIFHTN 123 (302)
Q Consensus 61 Gs~i~S--k~~~~YG~~eariKlp~g~s~G~v~AFwl~s~------~-~~~~EIDi-E~lGn~~g~---p----~~~qtN 123 (302)
.++|.| |+.|+|||||+|||||.| .|+||||||++. | |..+|||| |..||..-. . ..++..
T Consensus 98 Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g 175 (321)
T cd02179 98 SARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGG 175 (321)
T ss_pred eeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEcc
Confidence 367888 478999999999999999 799999999985 3 78899998 999985210 1 122222
Q ss_pred EEeCCCC-Ccc---eeecCCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEecccc----------------CCCCCCCC
Q 036092 124 VITQGKG-DRE---QQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLES----------------INIPYPKN 183 (302)
Q Consensus 124 v~~~g~g-~~e---~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~----------------~g~~~P~~ 183 (302)
.|..... .+. .......+..++||+|+|+|+|++|+|||||++++++..... .....|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD 255 (321)
T cd02179 176 PVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFD 255 (321)
T ss_pred cccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCC
Confidence 2221111 111 011112456789999999999999999999999999986321 12346889
Q ss_pred CceEEEEeeecCC
Q 036092 184 QPMRIHSSLWNAD 196 (302)
Q Consensus 184 ~Pm~l~lnlW~gg 196 (302)
+|++|+|||++||
T Consensus 256 ~~FyliLNlAVGG 268 (321)
T cd02179 256 KEFYLSLGVGVGG 268 (321)
T ss_pred CCeEEEEEEEecC
Confidence 9999999999987
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.9e-24 Score=207.60 Aligned_cols=155 Identities=26% Similarity=0.433 Sum_probs=128.0
Q ss_pred eeecCCcEEEcCCCcEEEEEEcC-------CCCceEEEccc--eEeEEEEEEEEecCCCCCccEEEEEeecC----CCCC
Q 036092 36 IIWGIDKVRILNDGEVLNLYLGK-------DTGSGFQSKNE--YLFGKIDMQFKLVPGNSAGTVTSYYLSSQ----GSTW 102 (302)
Q Consensus 36 ~~w~~~nv~~~~~G~~L~L~ld~-------~sGs~i~Sk~~--~~YG~~eariKlp~g~s~G~v~AFwl~s~----~~~~ 102 (302)
++|..+++.+..+|. |.|.+++ ..+++++|..+ |+||++|+|||+|.+ .|+||||||++. +.-+
T Consensus 74 ~~w~~~~~~lt~~~~-l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~wp 150 (355)
T COG2273 74 LTWYVSNVVLTIGGT-LELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGWP 150 (355)
T ss_pred cceeecceeEeeCCe-eeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCCC
Confidence 356666777765554 8887754 35688999766 999999999999977 899999999984 3456
Q ss_pred CeEEEecCCCCCCCCcEEEEEEEeCCCCCcceeecCCC-CCCCCcEEEEEEEcCCcEEEEECCeeEEEEeccccCCCCCC
Q 036092 103 DEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWF-DPTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYP 181 (302)
Q Consensus 103 ~EIDiE~lGn~~g~p~~~qtNv~~~g~g~~e~~~~l~f-dp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P 181 (302)
+|||||++|+++. +..+|+|.+.++.++.+......+ +..++||+|.++|.+++|+|||||++++++... ...|
T Consensus 151 ~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~~~ 225 (355)
T COG2273 151 DEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DYIP 225 (355)
T ss_pred cceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----ccCc
Confidence 9999999997643 446999999998888776666666 888999999999999999999999999998753 3358
Q ss_pred CCCceEEEEeeecCCCcc
Q 036092 182 KNQPMRIHSSLWNADDWA 199 (302)
Q Consensus 182 ~~~Pm~l~lnlW~ggdWa 199 (302)
+ .||++++|+|.++.+.
T Consensus 226 ~-~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 226 Q-IPFYVLVNLWMGGYAG 242 (355)
T ss_pred C-CcceeEEeecccCccC
Confidence 7 9999999999998764
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.78 E-value=1.7e-19 Score=127.33 Aligned_cols=46 Identities=54% Similarity=1.175 Sum_probs=37.2
Q ss_pred CCCcccccc--cCCHHHHHHHHHHhhcCeEeecccCCCCCCCCCCccc
Q 036092 244 SSSAWMKID--ELDETSREKLKWVQKNYMIYNYCTDTKRFPKGLPLEC 289 (302)
Q Consensus 244 ~~~~w~~~~--~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~p~ec 289 (302)
++..||+.. .|+.+|+++|+|||+||||||||+|++|||.++|+||
T Consensus 4 ~~~~w~~~~~~~L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 4 SSKSWWNQPYAQLSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TTTSGGCSCCCS--HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CCcccccCcccCCCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 456799831 3999999999999999999999999999998779999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.60 E-value=1.2e-14 Score=144.04 Aligned_cols=179 Identities=22% Similarity=0.311 Sum_probs=119.0
Q ss_pred ecCCcEEEcCCCcEEEEEEcCC-------CCceEEE--ccceEeEEEEEEEEecCC-CCCccEEEEEeecC---------
Q 036092 38 WGIDKVRILNDGEVLNLYLGKD-------TGSGFQS--KNEYLFGKIDMQFKLVPG-NSAGTVTSYYLSSQ--------- 98 (302)
Q Consensus 38 w~~~nv~~~~~G~~L~L~ld~~-------sGs~i~S--k~~~~YG~~eariKlp~g-~s~G~v~AFwl~s~--------- 98 (302)
+.++.|.. .+|. |+|++++. .++.++| |+-|+-|++|++++||.. +..|+|||||++++
T Consensus 158 Y~p~~vtt-~~G~-l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~as 235 (504)
T PF03935_consen 158 YDPDAVTT-ENGS-LVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGAS 235 (504)
T ss_pred ecCCCcEe-eCCE-EEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccc
Confidence 44666654 5676 99998653 2456677 777888999999999853 36899999999963
Q ss_pred ----CC---------------------------------------------CCCeEEE-ecCCCCC-CCCc---EEEEEE
Q 036092 99 ----GS---------------------------------------------TWDEIDF-EFLGNLS-GDPY---IFHTNV 124 (302)
Q Consensus 99 ----~~---------------------------------------------~~~EIDi-E~lGn~~-g~p~---~~qtNv 124 (302)
|| ...|||| |-..... +.+. .+|..=
T Consensus 236 t~g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP 315 (504)
T PF03935_consen 236 TDGMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAP 315 (504)
T ss_pred cCceecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeecc
Confidence 11 1249997 8654321 1011 122111
Q ss_pred E---e----------CCC--------CCccee-e----cC---CC--CCCCCcEEEEEEEcCC-----cEEEEECCeeEE
Q 036092 125 I---T----------QGK--------GDREQQ-F----YP---WF--DPTSDFHTYSILWNPK-----TIVFYVDGTPIR 168 (302)
Q Consensus 125 ~---~----------~g~--------g~~e~~-~----~l---~f--dp~~dfHtY~i~Wtp~-----~I~fyVDG~~vr 168 (302)
| . +.. |+.-|+ + .+ ++ ....+||+|++||.|. .|+|+|||+++.
T Consensus 316 ~d~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~tw 395 (504)
T PF03935_consen 316 FDIWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTW 395 (504)
T ss_pred cccCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEE
Confidence 1 0 000 111111 1 11 11 1237899999999874 899999999999
Q ss_pred EEecccc------CCCCCCCCCceEEEEeeecCCCccCCCCccccCCCC--CCeEEEEceEEEEe
Q 036092 169 EFKNLES------INIPYPKNQPMRIHSSLWNADDWATRGGLVKTDWTK--APFTASCRNFNAKT 225 (302)
Q Consensus 169 ~~~~~~~------~g~~~P~~~Pm~l~lnlW~ggdWat~GG~~~~d~~~--~Pf~a~~~~~~v~~ 225 (302)
++..... ....+|. .||+|++|+....+|+ .+||.+ .|.+|.||+|||..
T Consensus 396 ti~a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVYQ 453 (504)
T PF03935_consen 396 TINAEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVYQ 453 (504)
T ss_pred EEEhhhcCCCCCcCccccCc-CCceeeeccccccccC------ccccccccccceEEEeEEEEec
Confidence 9976532 1246887 9999999999999995 357765 58899999999965
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.56 E-value=4.3e-14 Score=132.24 Aligned_cols=165 Identities=20% Similarity=0.292 Sum_probs=106.9
Q ss_pred cCCccccCCeee------------------ecCCcEEEcCCCcEEEEEEcCCC---------CceEEEccceEeEEEEEE
Q 036092 26 PASNFYQDFDII------------------WGIDKVRILNDGEVLNLYLGKDT---------GSGFQSKNEYLFGKIDMQ 78 (302)
Q Consensus 26 ~~~~f~~~f~~~------------------w~~~nv~~~~~G~~L~L~ld~~s---------Gs~i~Sk~~~~YG~~ear 78 (302)
.+.+|+++|+.- ...+.+.+ .+|. |.|.+|... .++|.||..|.+|++|+|
T Consensus 9 ~g~~Ffd~f~f~~~~DPT~G~V~Yv~~~~A~~~gL~~v-~~g~-l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~ 86 (293)
T cd02181 9 DGSNFFDGFDFFTGDDPTHGFVNYVDQSTATSLGLAYV-NSGN-VYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIAD 86 (293)
T ss_pred cCCCcccCCEEcCCCCCCCeeEEEEcHHHHhhCCCeEe-eCCe-EEEEEeceeccCCCCCceEEEEEEeceeecceEEEE
Confidence 466899999841 11223433 4565 888886542 367999999999999999
Q ss_pred E-EecCCCCCccEEEEEeecC-CCCCCeEEE-ecCCCCCCCCcEEEEEEEeCCC----------C-------------Cc
Q 036092 79 F-KLVPGNSAGTVTSYYLSSQ-GSTWDEIDF-EFLGNLSGDPYIFHTNVITQGK----------G-------------DR 132 (302)
Q Consensus 79 i-Klp~g~s~G~v~AFwl~s~-~~~~~EIDi-E~lGn~~g~p~~~qtNv~~~g~----------g-------------~~ 132 (302)
+ |||.+ .|+||||||++. ||..+|||| |.++..+ ..+..+|+.+. | +.
T Consensus 87 ~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~vn~~~----~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~ 160 (293)
T cd02181 87 IAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGVNLQT----SNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNA 160 (293)
T ss_pred hhhCCCC--CCccchhhhcCCCCCCCCcEEEEeccCCCC----ceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCC
Confidence 8 99998 899999999987 999999998 9997532 24444554311 0 00
Q ss_pred c--------eeecCCCCCCCCcEEEEEEEcCCcEEEEEC---CeeEEEEecccc------CCCCCCCC--------CceE
Q 036092 133 E--------QQFYPWFDPTSDFHTYSILWNPKTIVFYVD---GTPIREFKNLES------INIPYPKN--------QPMR 187 (302)
Q Consensus 133 e--------~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVD---G~~vr~~~~~~~------~g~~~P~~--------~Pm~ 187 (302)
. ..+-..|+ ..+=-.|+++|+.+.|..+.- .+|--....... +-..||.+ ++++
T Consensus 161 GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~~iP~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~ 239 (293)
T cd02181 161 GCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRGSIPADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQR 239 (293)
T ss_pred CceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCCCCCcccccCCCCCcccCcccccCCCCCCChhHhcccCE
Confidence 0 01111222 233469999999999986653 222211111100 11234421 7999
Q ss_pred EEEeeecCCCcc
Q 036092 188 IHSSLWNADDWA 199 (302)
Q Consensus 188 l~lnlW~ggdWa 199 (302)
|++|+--=||||
T Consensus 240 iVfn~tfCGdwA 251 (293)
T cd02181 240 IVFDTTFCGDWA 251 (293)
T ss_pred EEEEeecccccc
Confidence 999999999999
No 18
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=92.81 E-value=0.84 Score=39.03 Aligned_cols=113 Identities=19% Similarity=0.337 Sum_probs=61.0
Q ss_pred cCCCcEEEEEE--cCCCCceEEEccceEeEEEEEEEEecCCCCCccEEEEEeecC-------CCCCCeEEEecCCCCCCC
Q 036092 46 LNDGEVLNLYL--GKDTGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLSSQ-------GSTWDEIDFEFLGNLSGD 116 (302)
Q Consensus 46 ~~~G~~L~L~l--d~~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~v~AFwl~s~-------~~~~~EIDiE~lGn~~g~ 116 (302)
..||. |+ .. ....++-+.|+..|.=..+++.+|+.++ | -.++++-.. ....-|+.|.--+.....
T Consensus 28 v~dG~-l~-~~~~~~~~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~~ 101 (185)
T PF06439_consen 28 VKDGV-LV-SNGSSGSGGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTGL 101 (185)
T ss_dssp EETTE-EE--GGGGESSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCSTT
T ss_pred eeCCE-EE-ecccCCCCcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccCC
Confidence 36775 44 11 2234567888887777889999998543 2 334444332 123445555322110000
Q ss_pred CcEEEEEEEeCCCCCcc-------eeecCCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEecc
Q 036092 117 PYIFHTNVITQGKGDRE-------QQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNL 173 (302)
Q Consensus 117 p~~~qtNv~~~g~g~~e-------~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 173 (302)
.+..|... ........+..+||++.|.-..++|+.+|||++|.++...
T Consensus 102 ---------~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 102 ---------PNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp ---------TTSTTSBTTTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred ---------CCccceEEEeccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 00111100 0011112356799999999999999999999999998764
No 19
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=92.15 E-value=3.1 Score=33.37 Aligned_cols=66 Identities=20% Similarity=0.385 Sum_probs=39.3
Q ss_pred CCCcEEEEEEEcCCcEEEEECCeeEEEEeccccCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCeEEEEceEE
Q 036092 143 TSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNADDWATRGGLVKTDWTKAPFTASCRNFN 222 (302)
Q Consensus 143 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~ggdWat~GG~~~~d~~~~Pf~a~~~~~~ 222 (302)
...||..++.|..+.+.+||||+++.+...... ...+...++.| |+. .....+|...++.++
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~--~~~~~~~~~~i-------------G~~---~~~~~~~~g~i~~~~ 145 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN--ISLNSNGPLFI-------------GGS---GGGSSPFNGYIDDLR 145 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEESS--SSTTSCCEEEE-------------SS----STT--B-EEEEEEEE
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccCC--cCCCCcceEEE-------------eec---CCCCCceEEEEEEEE
Confidence 488999999999999999999998765432211 01111122222 221 122568999999999
Q ss_pred EEee
Q 036092 223 AKTC 226 (302)
Q Consensus 223 v~~c 226 (302)
|...
T Consensus 146 i~~~ 149 (157)
T PF13385_consen 146 IYNR 149 (157)
T ss_dssp EESS
T ss_pred EECc
Confidence 8553
No 20
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=90.51 E-value=0.21 Score=39.76 Aligned_cols=25 Identities=32% Similarity=0.216 Sum_probs=16.5
Q ss_pred ChhhhHHHHHHHHHHHHhhhhhcccc
Q 036092 1 MAAAKSLVVLIMLSALLSNSFVLVLP 26 (302)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (302)
|| +|+|+|++++||+++++++..++
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhhh
Confidence 88 88887777776665555554443
No 21
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=89.19 E-value=11 Score=30.86 Aligned_cols=70 Identities=11% Similarity=0.177 Sum_probs=44.6
Q ss_pred CCCCcEEEEEEEcC--CcEEEEECCeeEEEEeccccCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCeEEEEc
Q 036092 142 PTSDFHTYSILWNP--KTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNADDWATRGGLVKTDWTKAPFTASCR 219 (302)
Q Consensus 142 p~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~ggdWat~GG~~~~d~~~~Pf~a~~~ 219 (302)
+...||...+.++. .+|++||||+++.+.... +.+...|+.|-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 44789999999998 799999999988654321 1222234433211111 11 12348889999
Q ss_pred eEEEEeeee
Q 036092 220 NFNAKTCIR 228 (302)
Q Consensus 220 ~~~v~~c~~ 228 (302)
.++|..+..
T Consensus 122 evriy~~aL 130 (133)
T smart00560 122 EVRVYNRAL 130 (133)
T ss_pred EEEEecccc
Confidence 999977653
No 22
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=87.22 E-value=9.9 Score=33.16 Aligned_cols=88 Identities=18% Similarity=0.264 Sum_probs=50.8
Q ss_pred EEEEEEEecCCCCCccEEEEEeecCCCCCCeEEEecCCCCCCCCcEEEEEEEeCCCCCccee--ecCCCCCCCCcEEEEE
Q 036092 74 KIDMQFKLVPGNSAGTVTSYYLSSQGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQ--FYPWFDPTSDFHTYSI 151 (302)
Q Consensus 74 ~~eariKlp~g~s~G~v~AFwl~s~~~~~~EIDiE~lGn~~g~p~~~qtNv~~~g~g~~e~~--~~l~fdp~~dfHtY~i 151 (302)
.+.+.+|..+. +.|+.-++.-. + ...++-++..|. ++ .+. ++..+..+..+. +.-..-....||..++
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~-~--~~~~l~v~l~g~---~~-~~~--~~~~~~~g~~~~~~f~~~~l~dg~WH~lal 124 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA-Q--NVRQFGLEVDGR---AN-TLL--LRYQGVDGKQHTVSFRNLPLADGQWHKLAL 124 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC-C--CcEEEEEEEeCC---cc-EEE--EEECCCCCcEEEEeecCCccccCCceEEEE
Confidence 36667776543 35665555442 2 334555565553 22 232 222233332222 2211123578999999
Q ss_pred EEcCCcEEEEECCeeEEEEe
Q 036092 152 LWNPKTIVFYVDGTPIREFK 171 (302)
Q Consensus 152 ~Wtp~~I~fyVDG~~vr~~~ 171 (302)
.+..+++++|||++++.+..
T Consensus 125 ~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 125 SVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEeCCEEEEEECCcccccee
Confidence 99999999999999887753
No 23
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=86.87 E-value=1.1 Score=39.77 Aligned_cols=104 Identities=23% Similarity=0.348 Sum_probs=53.6
Q ss_pred EEEcCCCCceEEEccc---eEeE-EEEEEEEecCCCCCccEEEEEeecCCCCCCeEEEecCCCCCCCCcEEEEEEEeCCC
Q 036092 54 LYLGKDTGSGFQSKNE---YLFG-KIDMQFKLVPGNSAGTVTSYYLSSQGSTWDEIDFEFLGNLSGDPYIFHTNVITQGK 129 (302)
Q Consensus 54 L~ld~~sGs~i~Sk~~---~~YG-~~eariKlp~g~s~G~v~AFwl~s~~~~~~EIDiE~lGn~~g~p~~~qtNv~~~g~ 129 (302)
+.+....|+++.||.. -.+| +....||+..| |..+-.|-=+. ..--++|-+-.+ |+ +-. .-.|.
T Consensus 11 ~qi~gw~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~--~r~l~~lsvn~s--G~---LvA--~L~g~ 78 (198)
T PF09264_consen 11 WQIAGWGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGS--KRYLPILSVNES--GS---LVA--ELEGQ 78 (198)
T ss_dssp EEEEETTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESS--EEEEEEEEE-TT--S----EEE--EETTS
T ss_pred EEEeccccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCc--eEEEEEEEEcCC--CC---EEE--EEecC
Confidence 3344467888888644 2366 68888888766 55554443222 111111111111 10 110 11111
Q ss_pred CCcceeecCCCCCCCCcEEEEEEEcC--CcEEEEECCeeEEEE
Q 036092 130 GDREQQFYPWFDPTSDFHTYSILWNP--KTIVFYVDGTPIREF 170 (302)
Q Consensus 130 g~~e~~~~l~fdp~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~ 170 (302)
+.+ ..+.+....-.+||.|.|...| ..-.|||||++|++.
T Consensus 79 ss~-~~~~~~~~di~gyH~Y~i~~~p~~~tASfy~DG~lI~tw 120 (198)
T PF09264_consen 79 SSN-TLLATTGADIHGYHKYEIVFSPLTNTASFYFDGTLIATW 120 (198)
T ss_dssp -S--EEEE-CHHHHCSEEEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred CCc-EEEecccccccceeEEEEEecCCCCceEEEECCEEEeec
Confidence 111 1122220112579999999988 889999999999985
No 24
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=81.60 E-value=7.2 Score=35.95 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=48.9
Q ss_pred EEEEEEEecCCC-----CCccEEEEEeecC---------------CC-CCCeEEE-ecCCCCCCCCcEEEEEEEe-CCCC
Q 036092 74 KIDMQFKLVPGN-----SAGTVTSYYLSSQ---------------GS-TWDEIDF-EFLGNLSGDPYIFHTNVIT-QGKG 130 (302)
Q Consensus 74 ~~eariKlp~g~-----s~G~v~AFwl~s~---------------~~-~~~EIDi-E~lGn~~g~p~~~qtNv~~-~g~g 130 (302)
-|-.+.+||... ...=.||+||++. |. ..+|+|| |.|.. ++. .+-+.+|. +|..
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~--g~~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNS--GDD-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccC--CCc-eeEEEEecccCcc
Confidence 367778888731 1345799999973 43 5899997 99975 333 56666665 3421
Q ss_pred -----CcceeecCCCCCCCCcEEEEEEEcCC
Q 036092 131 -----DREQQFYPWFDPTSDFHTYSILWNPK 156 (302)
Q Consensus 131 -----~~e~~~~l~fdp~~dfHtY~i~Wtp~ 156 (302)
+....+-. -|+...-++.+.++.+
T Consensus 179 ~~~~g~G~~~yf~--RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDYFK--RPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCccc--CCCCCCeEEEEEEcCC
Confidence 11111211 3677888899888643
No 25
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=78.44 E-value=34 Score=27.61 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=46.9
Q ss_pred EeEEEEEEEEecCCCCCccEEEEEeecCCCCCCeEEEecCCCCCCCCcEEEEEEEeCCCCCcceeecCCC-CCCCCcEEE
Q 036092 71 LFGKIDMQFKLVPGNSAGTVTSYYLSSQGSTWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYPWF-DPTSDFHTY 149 (302)
Q Consensus 71 ~YG~~eariKlp~g~s~G~v~AFwl~s~~~~~~EIDiE~lGn~~g~p~~~qtNv~~~g~g~~e~~~~l~f-dp~~dfHtY 149 (302)
....+++++|.... .|++ |++-+. ...+-+-+|... | .+...+-. | .....+.... -....||..
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~---g---~l~~~~~~-g--~~~~~~~~~~~v~dg~Wh~v 85 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELED---G---RLVLRYDL-G--SGSLVLSSKTPLNDGQWHSV 85 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEEC---C---EEEEEEcC-C--cccEEEEccCccCCCCEEEE
Confidence 34567777776543 4654 232222 134555556553 2 23322221 2 2222232221 234679999
Q ss_pred EEEEcCCcEEEEECCeeEEE
Q 036092 150 SILWNPKTIVFYVDGTPIRE 169 (302)
Q Consensus 150 ~i~Wtp~~I~fyVDG~~vr~ 169 (302)
.|.+..+.+.++|||.+..+
T Consensus 86 ~i~~~~~~~~l~VD~~~~~~ 105 (151)
T cd00110 86 SVERNGRSVTLSVDGERVVE 105 (151)
T ss_pred EEEECCCEEEEEECCccEEe
Confidence 99999999999999985433
No 26
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=74.41 E-value=31 Score=30.52 Aligned_cols=56 Identities=13% Similarity=0.338 Sum_probs=38.2
Q ss_pred ecCCCCCCCCcEEEEEE--EcC---CcEEEEECCeeEEEEeccccCCCCCCCCCceEEEEeeecC
Q 036092 136 FYPWFDPTSDFHTYSIL--WNP---KTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNA 195 (302)
Q Consensus 136 ~~l~fdp~~dfHtY~i~--Wtp---~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~g 195 (302)
..+...+...||++.|. |.+ ..|..++||+++..+..... ++.....++-++|.-.
T Consensus 144 ~~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~~----~~~~~~~y~K~GiYr~ 204 (224)
T PF14099_consen 144 VDLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPTG----YNDDRGPYFKFGIYRS 204 (224)
T ss_dssp EECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEEC----ECCSSEEEEEEEEEEH
T ss_pred ecCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCce----eCCCCcceeEEEEECC
Confidence 34444455889988775 765 67999999999988876321 2323677888888754
No 27
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=70.71 E-value=13 Score=33.90 Aligned_cols=59 Identities=25% Similarity=0.418 Sum_probs=38.5
Q ss_pred CCcEEEEEEEcCCcEEEEECCeeEEEEeccccCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCC-CCeEEEEceEE
Q 036092 144 SDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNADDWATRGGLVKTDWTK-APFTASCRNFN 222 (302)
Q Consensus 144 ~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~ggdWat~GG~~~~d~~~-~Pf~a~~~~~~ 222 (302)
..|+.-.|.-....|.|.|||.+|..++.+.. ...|. . .+|++ -..+ +|..|.|++++
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPv-----------l------~~G~I--GfRqMapl~A~Yrnl~ 217 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPV-----------L------RGGRI--GFRQMAPLVARYRNLE 217 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS--------------------SBEE--EEEEETT-EEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCc-----------c------cCcEe--eeeccchhhhhhcccc
Confidence 36777788889999999999999999876432 11242 0 14643 3333 69999999998
Q ss_pred E
Q 036092 223 A 223 (302)
Q Consensus 223 v 223 (302)
|
T Consensus 218 V 218 (218)
T PF09224_consen 218 V 218 (218)
T ss_dssp E
T ss_pred C
Confidence 6
No 28
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=68.81 E-value=84 Score=27.82 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=42.2
Q ss_pred CCCCcEEEEEEEc--CCcEEEEECCeeEEEEeccccCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCeEEEEc
Q 036092 142 PTSDFHTYSILWN--PKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNADDWATRGGLVKTDWTKAPFTASCR 219 (302)
Q Consensus 142 p~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~ggdWat~GG~~~~d~~~~Pf~a~~~ 219 (302)
....||...+.|+ ..++.+||||+++.. ..-..+..++ .+-.|+|+- .-+.+ ||.. + ....|.-.++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~--~~~~~g~~i~--~~G~lvlGq-~qd~~---gg~f--~-~~~~f~G~i~ 156 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR--KGLAKGYTVK--PGGSIILGQ-EQDSY---GGGF--D-ATQSFVGEIG 156 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc--ccccCCcEEC--CCCEEEEEe-cccCC---CCCC--C-CCcceeEEEe
Confidence 4578999999997 457999999998621 1111222233 233344443 11222 3422 3 2346777888
Q ss_pred eEEEEee
Q 036092 220 NFNAKTC 226 (302)
Q Consensus 220 ~~~v~~c 226 (302)
.|+|..-
T Consensus 157 ~v~iw~~ 163 (206)
T smart00159 157 DLNMWDS 163 (206)
T ss_pred eeEEecc
Confidence 8877553
No 29
>PRK02710 plastocyanin; Provisional
Probab=57.44 E-value=28 Score=28.24 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=9.0
Q ss_pred eecCCcEEEcCCCcEEEEE
Q 036092 37 IWGIDKVRILNDGEVLNLY 55 (302)
Q Consensus 37 ~w~~~nv~~~~~G~~L~L~ 55 (302)
.+.|..+.+. -|..++++
T Consensus 43 ~F~P~~i~v~-~Gd~V~~~ 60 (119)
T PRK02710 43 AFEPSTLTIK-AGDTVKWV 60 (119)
T ss_pred EEeCCEEEEc-CCCEEEEE
Confidence 4555666653 34345554
No 30
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=57.18 E-value=1.4e+02 Score=26.29 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=41.8
Q ss_pred CCCCcEEEEEEEc--CCcEEEEECCeeEEEEeccccCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCeEEEEc
Q 036092 142 PTSDFHTYSILWN--PKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNADDWATRGGLVKTDWTKAPFTASCR 219 (302)
Q Consensus 142 p~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~ggdWat~GG~~~~d~~~~Pf~a~~~ 219 (302)
....||...+.|+ ..++.+||||+++..-. -..+..++. ...|.|+-- -..-||.. +. ...|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~~--~g~l~lG~~----q~~~gg~~--~~-~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVGP--GGSIILGQE----QDSYGGGF--DA-TQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEECC--CCeEEEeec----ccCCCCCC--CC-CcceEEEEc
Confidence 5678999999998 45799999999875432 111222332 223333321 11113422 32 346777888
Q ss_pred eEEEEe
Q 036092 220 NFNAKT 225 (302)
Q Consensus 220 ~~~v~~ 225 (302)
.|++..
T Consensus 157 ~v~iw~ 162 (201)
T cd00152 157 DVNMWD 162 (201)
T ss_pred eeEEEc
Confidence 887744
No 31
>smart00282 LamG Laminin G domain.
Probab=49.31 E-value=69 Score=25.56 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=23.2
Q ss_pred CCCcEEEEEEEcCCcEEEEECCeeEEE
Q 036092 143 TSDFHTYSILWNPKTIVFYVDGTPIRE 169 (302)
Q Consensus 143 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~ 169 (302)
...||.-.|.-..+.+..+|||.....
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~ 87 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVS 87 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCcccc
Confidence 458999999999999999999975443
No 32
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=48.56 E-value=65 Score=27.16 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=18.2
Q ss_pred cCCcEEEcCCCcEEEEEEcCCCCce
Q 036092 39 GIDKVRILNDGEVLNLYLGKDTGSG 63 (302)
Q Consensus 39 ~~~nv~~~~~G~~L~L~ld~~sGs~ 63 (302)
..+++.+...|..++|..|...|++
T Consensus 33 ~qs~~qv~g~G~V~~vLpdd~~Gsr 57 (131)
T PF11948_consen 33 QQSDVQVSGCGTVVKVLPDDNKGSR 57 (131)
T ss_pred hccCeeEeccEEEEEECcccCCCCc
Confidence 3466777777877777767788876
No 33
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=41.59 E-value=2.6e+02 Score=24.99 Aligned_cols=133 Identities=17% Similarity=0.271 Sum_probs=65.1
Q ss_pred ceEeEEEEEEEEecCCCCCccEEEEEeecCCC----------CCCeEEEecCCCCCCCCcEEEEEEEeCCCCCcceeecC
Q 036092 69 EYLFGKIDMQFKLVPGNSAGTVTSYYLSSQGS----------TWDEIDFEFLGNLSGDPYIFHTNVITQGKGDREQQFYP 138 (302)
Q Consensus 69 ~~~YG~~eariKlp~g~s~G~v~AFwl~s~~~----------~~~EIDiE~lGn~~g~p~~~qtNv~~~g~g~~e~~~~l 138 (302)
...-|.+-++.|.... + -+-|++-.++.. ..+++=+|+.+......+...+.+-..+ . .
T Consensus 31 ~L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~-----~-~-- 99 (190)
T PF02973_consen 31 KLEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRG-----G-Y-- 99 (190)
T ss_dssp T-SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--S-----E-E--
T ss_pred cccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEecc-----c-c--
Confidence 3446777777776432 3 445566555411 1126666777654333332222211100 0 0
Q ss_pred CCCCCCCcEEEEEEEc--CCcEEEEECCeeEEEEeccccCCCCCCCC--CceEEEEeeecCCCccCCCCccccCCCCCCe
Q 036092 139 WFDPTSDFHTYSILWN--PKTIVFYVDGTPIREFKNLESINIPYPKN--QPMRIHSSLWNADDWATRGGLVKTDWTKAPF 214 (302)
Q Consensus 139 ~fdp~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~--~Pm~l~lnlW~ggdWat~GG~~~~d~~~~Pf 214 (302)
+ ....||+-++.=+ .....+|+||..+.++.... ..|-.+ .+=.+.++ +- -++|. ...||
T Consensus 100 ~--~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n~~~iG----~t--~R~g~-----~~y~f 163 (190)
T PF02973_consen 100 K--NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLNSVQIG----GT--NRAGS-----NAYPF 163 (190)
T ss_dssp T--TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT--EEEES----SE--EETTE-----EES--
T ss_pred c--CCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCceEEEc----ce--EeCCC-----ceecc
Confidence 1 1346898888886 67799999998888775432 223211 12222222 11 12231 23499
Q ss_pred EEEEceEEEEeeee
Q 036092 215 TASCRNFNAKTCIR 228 (302)
Q Consensus 215 ~a~~~~~~v~~c~~ 228 (302)
.-.+++++|..+..
T Consensus 164 ~G~I~~l~iYn~aL 177 (190)
T PF02973_consen 164 NGTIDNLKIYNRAL 177 (190)
T ss_dssp EEEEEEEEEESS--
T ss_pred cceEEEEEEEcCcC
Confidence 99999999977643
No 34
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=41.08 E-value=29 Score=36.68 Aligned_cols=55 Identities=22% Similarity=0.413 Sum_probs=39.2
Q ss_pred CCCcEEEEEEEcCCcEEEEECCeeEEEEeccccCCCCCCCCCceEEEEeeecCCCccCCCCc
Q 036092 143 TSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNADDWATRGGL 204 (302)
Q Consensus 143 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~ggdWat~GG~ 204 (302)
.++||.|.+.-+--.++.||||+-..-..-. ..||- +|.++-.-|=+|-=|. |+.
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwpl-Hpsk~~tqLvVGACW~--g~~ 495 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWPL-HPSKIETQLVVGACWQ--GRQ 495 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec----cCCcc-CcccccceeEEeeecc--Ccc
Confidence 4789999999976669999999755332211 34776 7777777777777787 554
No 35
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=38.97 E-value=1.8e+02 Score=22.31 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=43.6
Q ss_pred CCCCcEEEEEEEcCCcEEEEECCeeEEEEeccccCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCeEEEEceE
Q 036092 142 PTSDFHTYSILWNPKTIVFYVDGTPIREFKNLESINIPYPKNQPMRIHSSLWNADDWATRGGLVKTDWTKAPFTASCRNF 221 (302)
Q Consensus 142 p~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~ggdWat~GG~~~~d~~~~Pf~a~~~~~ 221 (302)
....||+-.|.-....++..||+............. .-+...-.++.||.-....... .-....|.--++++
T Consensus 52 ~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~~------~~~~~~~~l~iGg~~~~~~~~~--~~~~~~f~Gci~~l 123 (128)
T PF02210_consen 52 NDGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSSS------DSLDPDGSLYIGGLPESNQPSG--SVDTPGFVGCIRDL 123 (128)
T ss_dssp TSSSEEEEEEEEETTEEEEEETTSEEEEEESSSTTH------HCBESEEEEEESSTTTTCTCTT--SSTTSB-EEEEEEE
T ss_pred cccceeEEEEEEeeeeEEEEecCccceEEeccccce------ecccCCCCEEEecccCcccccc--ccCCCCcEEEcCeE
Confidence 356799999999999999999999888765432110 0222334466666543111110 00044566666666
Q ss_pred EEE
Q 036092 222 NAK 224 (302)
Q Consensus 222 ~v~ 224 (302)
+++
T Consensus 124 ~vn 126 (128)
T PF02210_consen 124 RVN 126 (128)
T ss_dssp EET
T ss_pred EEC
Confidence 653
No 36
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=37.71 E-value=86 Score=24.39 Aligned_cols=23 Identities=9% Similarity=0.274 Sum_probs=16.0
Q ss_pred eecCCcEEEcCCCcEEEEEEcCCC
Q 036092 37 IWGIDKVRILNDGEVLNLYLGKDT 60 (302)
Q Consensus 37 ~w~~~nv~~~~~G~~L~L~ld~~s 60 (302)
.+.|+.+++ +-|..++|++.+.+
T Consensus 31 ~f~P~~i~v-~~G~~v~l~~~N~~ 53 (104)
T PF13473_consen 31 GFSPSTITV-KAGQPVTLTFTNND 53 (104)
T ss_dssp EEES-EEEE-ETTCEEEEEEEE-S
T ss_pred eEecCEEEE-cCCCeEEEEEEECC
Confidence 688999998 56776888886543
No 37
>PRK11372 lysozyme inhibitor; Provisional
Probab=37.65 E-value=77 Score=25.68 Aligned_cols=7 Identities=0% Similarity=0.226 Sum_probs=3.8
Q ss_pred EEEEeec
Q 036092 91 TSYYLSS 97 (302)
Q Consensus 91 ~AFwl~s 97 (302)
..||..+
T Consensus 80 ~~fWtKG 86 (109)
T PRK11372 80 YVFWSKG 86 (109)
T ss_pred EEEEEeC
Confidence 4666643
No 38
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=31.66 E-value=1.2e+02 Score=24.57 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=34.5
Q ss_pred EEEeCCCCCcceeec-CCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEec
Q 036092 123 NVITQGKGDREQQFY-PWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKN 172 (302)
Q Consensus 123 Nv~~~g~g~~e~~~~-l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~ 172 (302)
|.+.+|..+.|++.. .+|.+. +..+-.|.=++++...+|||+++..+..
T Consensus 56 Ns~~~g~Wg~Eer~~~~pf~~g-~~F~l~i~~~~~~f~i~vng~~~~~F~~ 105 (127)
T cd00070 56 NSFLNGNWGPEERSGGFPFQPG-QPFELTILVEEDKFQIFVNGQHFFSFPH 105 (127)
T ss_pred cCCCCCEecHhhccCCCCCCCC-CeEEEEEEEcCCEEEEEECCEeEEEecC
Confidence 344445445665553 455544 4458899999999999999999988754
No 39
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=29.81 E-value=1e+02 Score=22.99 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=32.4
Q ss_pred ecCCcEEEcCCCcEEEEEEcCCCCceEEEccceEeEEEEEEEEecCCCCCccEEEE
Q 036092 38 WGIDKVRILNDGEVLNLYLGKDTGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSY 93 (302)
Q Consensus 38 w~~~nv~~~~~G~~L~L~ld~~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~v~AF 93 (302)
+.++.|.+.-+++.|.|+..+..... ...+.+|+|+=+++||..-...-+.|-
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~vd~~~i~A~ 70 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEGVDPDSVTSS 70 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCCCChHHeEEE
Confidence 44566666445566888875432211 345678999999999976333334443
No 40
>PF15240 Pro-rich: Proline-rich
Probab=28.42 E-value=39 Score=29.95 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhhhh
Q 036092 9 VLIMLSALLSNSFV 22 (302)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (302)
||||.+||++++.|
T Consensus 3 lVLLSvALLALSSA 16 (179)
T PF15240_consen 3 LVLLSVALLALSSA 16 (179)
T ss_pred hHHHHHHHHHhhhc
Confidence 34443444444433
No 41
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=27.81 E-value=1.1e+02 Score=26.56 Aligned_cols=36 Identities=28% Similarity=0.576 Sum_probs=27.9
Q ss_pred eeecCCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEE
Q 036092 134 QQFYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREF 170 (302)
Q Consensus 134 ~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~ 170 (302)
.++++|- .+.|=|.|+|.-..+.+..|++|..+++-
T Consensus 93 k~~~~W~-~t~dg~~~RivL~kdtm~~w~NG~~l~Ta 128 (187)
T KOG4352|consen 93 KQYRLWL-YTDDGQEYRIVLKKDTMSLWVNGDELRTA 128 (187)
T ss_pred hheeEEE-EecCCceEEEEEeccceeeEEcCcccccc
Confidence 4556553 23444999999999999999999988863
No 42
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=27.48 E-value=1e+02 Score=23.87 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=30.2
Q ss_pred cCCcEEEcCCCcEEEEEEcCCCCceEEEccceEeEEEEEEEEecCCCCCccEEE
Q 036092 39 GIDKVRILNDGEVLNLYLGKDTGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTS 92 (302)
Q Consensus 39 ~~~nv~~~~~G~~L~L~ld~~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~v~A 92 (302)
.++.|.+.-.++.|+|+..+..-..-.....+.||.|+=++.||.+-...-+.|
T Consensus 20 ~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A 73 (87)
T cd06482 20 EPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTY 73 (87)
T ss_pred CHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEE
Confidence 345555533444588887543211100123579999999999997533333443
No 43
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.57 E-value=5.2e+02 Score=23.56 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=40.2
Q ss_pred EEEEEEcCCCCceEEEccceEeEEEEEEEEecCCCCCccEEEEEee--cC-CC-CCCeEEEecCC
Q 036092 51 VLNLYLGKDTGSGFQSKNEYLFGKIDMQFKLVPGNSAGTVTSYYLS--SQ-GS-TWDEIDFEFLG 111 (302)
Q Consensus 51 ~L~L~ld~~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~v~AFwl~--s~-~~-~~~EIDiE~lG 111 (302)
.+.+.+..+.|..+.++..+.-|+|...+.- +|+..+-+.. .. .| ...+||++|--
T Consensus 61 ~~~~~Vts~~G~~~~~~env~~gqFaFta~e-----~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~ 120 (210)
T KOG1691|consen 61 KLSVKVTSPYGNNLHSKENVTKGQFAFTAEE-----SGMYEACFTADVPGHKPETKRSIDLDWKT 120 (210)
T ss_pred eEEEEEEcCCCceeehhhccccceEEEEecc-----CCcEEEEEecccCCCCCCcceEEEEEeec
Confidence 4777778888999999999999988877763 4666665554 11 23 34789988863
No 44
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=25.06 E-value=3.3e+02 Score=23.33 Aligned_cols=9 Identities=33% Similarity=0.910 Sum_probs=8.6
Q ss_pred CccEEEEEe
Q 036092 87 AGTVTSYYL 95 (302)
Q Consensus 87 ~G~v~AFwl 95 (302)
.|+..+|||
T Consensus 75 kGTi~tfwL 83 (146)
T PF10916_consen 75 KGTIYTFWL 83 (146)
T ss_pred cceEEEEee
Confidence 799999999
No 45
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=24.35 E-value=1.1e+02 Score=23.30 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=29.5
Q ss_pred ecCCcEEEcCCCcEEEEEEcCCCCc----eEEEccceEeEEEEEEEEecCC
Q 036092 38 WGIDKVRILNDGEVLNLYLGKDTGS----GFQSKNEYLFGKIDMQFKLVPG 84 (302)
Q Consensus 38 w~~~nv~~~~~G~~L~L~ld~~sGs----~i~Sk~~~~YG~~eariKlp~g 84 (302)
..++++.+.-+|..|+|+..+.... ... ...+.+|.|+-+++||..
T Consensus 22 ~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~-~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 22 FSEDDLEIEVENNQLTVTGKKADEENEEREYL-HRGIAKRAFERSFNLADH 71 (90)
T ss_pred CCHHHeEEEEECCEEEEEEEEcccccCCCcEE-EEEEeceEEEEEEECCCC
Confidence 3456666655666688887543222 111 235679999999999975
No 46
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=22.91 E-value=3.2e+02 Score=21.95 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=35.9
Q ss_pred EEEEEEeCCCCCccee-ecCCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEecc
Q 036092 120 FHTNVITQGKGDREQQ-FYPWFDPTSDFHTYSILWNPKTIVFYVDGTPIREFKNL 173 (302)
Q Consensus 120 ~qtNv~~~g~g~~e~~-~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 173 (302)
+--|.+.+|..+.|++ ...+|.+... -+-.|.=+++....+|||+.+..+...
T Consensus 58 iv~Ns~~~g~Wg~Ee~~~~~pf~~g~~-F~i~I~~~~~~f~I~vng~~~~~F~~R 111 (133)
T PF00337_consen 58 IVRNSRINGKWGQEERESPFPFQPGQP-FEIRIRVEEDGFKIYVNGKHFCSFPHR 111 (133)
T ss_dssp EEEEEEETTEE-SEEEESSTSSTTTSE-EEEEEEEESSEEEEEETTEEEEEEE-S
T ss_pred EEEeceECCEeccceeeeeeeecCCce-EEEEEEEecCeeEEEECCeEEEEeeCc
Confidence 3344455555566666 4455555444 477888899999999999999998753
Done!