BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036095
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 166/330 (50%), Gaps = 57/330 (17%)
Query: 1 MDQINGKVCVTGASGYLASWLVKRLLLAGYHVTGTVRDPGNERKLAHLWRLEGAKERLQI 60
M + VCVTGASG++ SWLV RLL GY V TVRDP N +K+ HL L A+ L +
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60
Query: 61 VRANLMDEGSFDDAINGCQGVFHTASPVLKPSSNPK-------------LMIFALIYLFL 107
+A+L DEGSFD+AI GC GVFH A+P+ S +P+ +M +
Sbjct: 61 WKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 120
Query: 108 RNYVL-------------------------------RKKIW-YALSKILAEKAAWEFCGH 135
R V + W Y +SK LAE+AAW++
Sbjct: 121 RRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE 180
Query: 136 NGIDLVTILPSFVIGP----SLPPDLCSTASDVLGLLKGEKEKFQWHGRMGYVHIDDVAL 191
N ID +TI+P+ V+GP S+PP L + L + G + + + +VH+DD+
Sbjct: 181 NNIDFITIIPTLVVGPFIMSSMPPSLIT----ALSPITGNEAHYSIIRQGQFVHLDDLCN 236
Query: 192 CHILVYEHQNSHGRYLCSSTVVDNNELVSLLSTRYPLLPIPERFELLDRPYYE--FNTSK 249
HI ++E+ + GRY+CSS +L +L +YP IP F+ +D F++ K
Sbjct: 237 AHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKK 296
Query: 250 LTSLLGFKFK-SIEEMFDDCIAWFDEQGYL 278
LT LGF+FK S+E+MF + +G L
Sbjct: 297 LTD-LGFEFKYSLEDMFTGAVDTCRAKGLL 325
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 174 bits (441), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 164/323 (50%), Gaps = 52/323 (16%)
Query: 6 GKVCVTGASGYLASWLVKRLLLAGYHVTGTVR-DPGNERKLAHLWRLEGAKERLQIVRAN 64
G+VCVTG +G+L SW++K LL GY V T+R DP +R ++ L L GA E+L A+
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNAD 61
Query: 65 LMDEGSFDDAINGCQGVFHTASPVLKPSSNPKLMI--------FALIYLFLRNYVLRKKI 116
L + SF AI GC G+FHTASP+ S P+ ++ ++ + + +++ I
Sbjct: 62 LSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFI 121
Query: 117 W-------------------------------------YALSKILAEKAAWEFCGHNGID 139
+ YA+SK LAEKA EF NGID
Sbjct: 122 YTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGID 181
Query: 140 LVTILPSFVIGPSLPPDLCSTASDVLGLLKGEKEKFQWHGRMGYVHIDDVALCHILVYEH 199
+VT++ F++G + P L + L L+ G+KE+ R VH+DDVA HI + E+
Sbjct: 182 VVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVT-RFHMVHVDDVARAHIYLLEN 240
Query: 200 QNSHGRYLCSSTVVDNNELVSLLSTRYP---LLPIPERFELLDRPYYEFNTSKLTSLLGF 256
GRY CS +V E+ LLS +YP +L + E E+ + NT KL GF
Sbjct: 241 SVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVD-AGF 299
Query: 257 KFK-SIEEMFDDCIAWFDEQGYL 278
FK +IE+MFDD I E+GYL
Sbjct: 300 DFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 156/326 (47%), Gaps = 58/326 (17%)
Query: 9 CVTGASGYLASWLVKRLLLAGYHVTGTVRDPGNERKLAHLWRLEGAKERLQIVRANLMDE 68
CV G +G++AS LVK LL GY V TVRDP N++K++HL L+ + L+I RA+L DE
Sbjct: 13 CVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD-LKIFRADLTDE 71
Query: 69 GSFDDAINGCQGVFHTASPVLKPSSNP-----KLMIFALIYLFL---------------- 107
SF+ I GC VFH A+PV S +P K I ++ +
Sbjct: 72 LSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSS 131
Query: 108 -----------RNYVLRKKIW---------------YALSKILAEKAAWEFCGHNGIDLV 141
V+ +K W Y SK LAEKAAW+F N IDL+
Sbjct: 132 AAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLI 191
Query: 142 TILPSFVIGPSLPPDLCSTASDVLGLLKGE-------KEKFQWHGRMGYVHIDDVALCHI 194
T++P+ + G SL D+ S+ + L+ G K G + H++DV HI
Sbjct: 192 TVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHI 251
Query: 195 LVYEHQNSHGRYLCSSTVVDNNELVSLLSTRYPLLPIPERF-ELLDRPYYEFNTSKLTSL 253
V E +++ GRY+C + EL LS RYP +P F + + ++ KL
Sbjct: 252 FVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPKSKLIISSEKLVK- 310
Query: 254 LGFKFK-SIEEMFDDCIAWFDEQGYL 278
GF FK IEE++D+ + +F +G L
Sbjct: 311 EGFSFKYGIEEIYDESVEYFKAKGLL 336
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 132/325 (40%), Gaps = 64/325 (19%)
Query: 8 VCVTGASGYLASWLVKRLLLAGYHVTGTVRDPGNERKLAHLWRLEGAKERLQIVRANLMD 67
V VTGA+G++AS +V++LL GY V GT R L W + V +++
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK 73
Query: 68 EGSFDDAINGCQGVFHTAS---------PVLKP------------SSNPKLMIFAL---- 102
+G++D+ I G GV H AS V+ P ++ P + F L
Sbjct: 74 QGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSST 133
Query: 103 ------------IYLFLRNYVL--------------RKKIW-YALSKILAEKAAWEFCGH 135
IYL +++ L +K +W YA SK AE AAW+F
Sbjct: 134 VSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDE 193
Query: 136 NG--IDLVTILPSFVIGPSLPPDL--CSTASDVLGLLKGE-KEKFQWHGRMGYVHIDDVA 190
N L +LP++ IG P+ ST+ ++ L GE YV D+
Sbjct: 194 NKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIG 253
Query: 191 LCHI--LVYEHQNSHGRYLCSSTVVDNNELVSLLSTRYPLLPIPERFELLDRPYYEFNTS 248
L H+ LV Q R ++ D N +++ YP P F + +F+T+
Sbjct: 254 LLHLGCLVLP-QIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTA 312
Query: 249 K----LTSLLGFKFKSIEEMFDDCI 269
L SL ++SIEE D +
Sbjct: 313 PSLEILKSLGRPGWRSIEESIKDLV 337
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 129/325 (39%), Gaps = 64/325 (19%)
Query: 8 VCVTGASGYLASWLVKRLLLAGYHVTGTVRDPGNERKLAHLWRLEGAKERLQIVRANLMD 67
V VTGA+G++AS +V++LL GY V GT R L W + V + +
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDXLK 73
Query: 68 EGSFDDAINGCQGVFHTAS---------PVLKP------------SSNPKLMIFAL---- 102
+G++D+ I G GV H AS V+ P ++ P + F L
Sbjct: 74 QGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSST 133
Query: 103 ------------IYLFLRNYVL--------------RKKIW-YALSKILAEKAAWEFCGH 135
IYL +++ L +K +W YA SK AE AAW+F
Sbjct: 134 VSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFXDE 193
Query: 136 NG--IDLVTILPSFVIGPSLPPDL--CSTASDVLGLLKGE-KEKFQWHGRMGYVHIDDVA 190
N L +LP++ IG P+ ST+ L GE YV D+
Sbjct: 194 NKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWXXSLFNGEVSPALALXPPQYYVSAVDIG 253
Query: 191 LCHI--LVYEHQNSHGRYLCSSTVVDNNELVSLLSTRYPLLPIPERFELLDRPYYEFNTS 248
L H+ LV Q R ++ D N +++ YP P F + +F+T+
Sbjct: 254 LLHLGCLVLP-QIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTA 312
Query: 249 K----LTSLLGFKFKSIEEMFDDCI 269
L SL ++SIEE D +
Sbjct: 313 PSLEILKSLGRPGWRSIEESIKDLV 337
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 12/164 (7%)
Query: 118 YALSKILAEKAAWEFCGHNGIDLVTILPSFVIGPSLPPDLCSTASDVLGLLKGEKEKFQW 177
YA+SK A ++ ++G+D VT + V+GP ++ L K+ F
Sbjct: 163 YAISK----SANEDYLEYSGLDFVTFRLANVVGPR---NVSGPLPIFFQRLSEGKKCFVT 215
Query: 178 HGRMGYVHIDDVALCHILVYEHQNSHGRYLCSSTVVDNNELVSLL--STRYPLLPIPERF 235
R +V + D+A + + + S T V EL + + P P PE
Sbjct: 216 KARRDFVFVKDLARATVRAVDGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIR 275
Query: 236 ELL--DRPYYEFNTSKLTSLLG-FKFKSIEEMFDDCIAWFDEQG 276
EL D P + S+ G +F ++E +A+F E G
Sbjct: 276 ELGPDDAPSILLDPSRTIQDFGKIEFTPLKETVAAAVAYFREYG 319
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 7 KVCVTGASGYLASWLVKRLLLAGYHVTGTVRDPGNERKLAHLWRLEGAKERLQIVRANLM 66
K+ + GASG++ S L+ L G+ VT VR P +++ E L++ +A
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHP---------EKIKIENEHLKVKKA--- 53
Query: 67 DEGSFDDAINGCQGVFHTASPVLKPSSNPKL 97
D S D+ C+G S +NP +
Sbjct: 54 DVSSLDEVCEVCKGADAVISAFNPGWNNPDI 84
>pdb|4GWP|D Chain D, Structure Of The Mediator Head Module From S. Cerevisiae
pdb|4GWQ|D Chain D, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
Length = 121
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 197 YEHQNSHGRYLCSSTVVDNNELVSLLSTRYPLL----PIPERFELLDRPYYEFNTSKLTS 252
+ +NS +S ++ NN+ + L+ LL I E++ L P E SK+T
Sbjct: 41 FAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQIPVTEH--SKVTR 98
Query: 253 LLGFKFKSIEEMFDDCIAWF 272
F K IEE+ D+CI F
Sbjct: 99 ---FDEKQIEELLDNCIETF 115
>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
Length = 279
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 10 VTGASGYLASWLVKRLLLAGYHVTGTVRDPGNERKLAHLWRLEGAKERLQIVRANLMDE 68
VTGASG + + + + L+ G V G R GN +LA + G L R +L +E
Sbjct: 37 VTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNE 95
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 7 KVCVTGASGYLASWLVKRLLLAGYH--------VTGTVRDPGNERKLAHLWRLEGAKERL 58
++ VTG +G++ S V++LL Y V ++ GN LA + A RL
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPV----DADPRL 57
Query: 59 QIVRANLMDEGSFDDAINGCQGVFHTAS 86
+ V ++ D G + G + H A+
Sbjct: 58 RFVHGDIRDAGLLARELRGVDAIVHFAA 85
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose
4,6-Dehydratase) From Streptomyces Venezuelae With Nad
And Tyd Bound
Length = 337
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 7 KVCVTGASGYLASWLVKRLLLAGYH--------VTGTVRDPGNERKLAHLWRLEGAKERL 58
++ VTG +G++ S V++LL Y V ++ GN LA + A RL
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPV----DADPRL 57
Query: 59 QIVRANLMDEGSFDDAINGCQGVFHTAS 86
+ V ++ D G + G + H A+
Sbjct: 58 RFVHGDIRDAGLLARELRGVDAIVHFAA 85
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent
Quinone Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 8 VCVTGASGYLASWLVKRLL--LAGYHVTGTVRDPGNERKLAHLWRLEGAKERLQIVRANL 65
+ +TGA+G L ++++ L+ + + VR+P + L A + + + +A+
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQAL--------AAQGITVRQADY 53
Query: 66 MDEGSFDDAINGCQ 79
DE + A+ G +
Sbjct: 54 GDEAALTSALQGVE 67
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 58/146 (39%), Gaps = 29/146 (19%)
Query: 111 VLRKK---IWYALSKILAEKAAWEFCGHNGIDL----VTILPSFVIGPS-LPPDLCSTAS 162
L+KK I YA +LA A E+ G I V V GP PD T S
Sbjct: 77 TLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQS 136
Query: 163 DVLGLLKGEKEKFQWHGRMGYVHIDDVAL--------CHILVYEHQNSHGRYLCSSTVVD 214
V +E F+ R+G+ + VAL CHI E HG + D
Sbjct: 137 HV-------REVFR---RLGFNDQETVALIGAHTCGECHI---EFSGYHGPWTHDKNGFD 183
Query: 215 NNELVSLLSTRYPLLPIPERFELLDR 240
N+ LL + L P E+ +L+DR
Sbjct: 184 NSFFTQLLDEDWVLNPKVEQMQLMDR 209
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 58/146 (39%), Gaps = 29/146 (19%)
Query: 111 VLRKK---IWYALSKILAEKAAWEFCGHNGIDL----VTILPSFVIGPS-LPPDLCSTAS 162
L+KK I YA +LA A E+ G I V V GP PD T S
Sbjct: 78 TLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQS 137
Query: 163 DVLGLLKGEKEKFQWHGRMGYVHIDDVAL--------CHILVYEHQNSHGRYLCSSTVVD 214
V +E F+ R+G+ + VAL CHI E HG + D
Sbjct: 138 HV-------REVFR---RLGFNDQETVALIGAHTCGECHI---EFSGYHGPWTHDKNGFD 184
Query: 215 NNELVSLLSTRYPLLPIPERFELLDR 240
N+ LL + L P E+ +L+DR
Sbjct: 185 NSFFTQLLDEDWVLNPKVEQMQLMDR 210
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 5 NGKVCVTGASGYLASWLVKRLLLAGYHVTGT 35
N K+ +TGA G++AS + +RL G++V +
Sbjct: 29 NLKISITGAGGFIASHIARRLKHEGHYVIAS 59
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 5 NGKVCVTGASGYLASWLVKRLLLAGYHVTGT 35
N K+ +TGA G++AS + +RL G++V +
Sbjct: 29 NLKISITGAGGFIASHIARRLKHEGHYVIAS 59
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound
In The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound
In The Active Site
Length = 379
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 5 NGKVCVTGASGYLASWLVKRLLLAGYHVTGT 35
N K+ +TGA G++AS + +RL G++V +
Sbjct: 29 NLKISITGAGGFIASHIARRLKHEGHYVIAS 59
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site
Length = 379
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 5 NGKVCVTGASGYLASWLVKRLLLAGYHVTGT 35
N K+ +TGA G++AS + +RL G++V +
Sbjct: 29 NLKISITGAGGFIASHIARRLKHEGHYVIAS 59
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 7 KVCVTGASGYLASWLVKRLLLAGYHVTGTVRDPGNERKLAHLWRLEGAKERLQIVRANLM 66
++ VTGA+G + S + L GT+ +E +L+ + L A+ +IV +L
Sbjct: 4 RLLVTGAAGGVGSAIRPHL--------GTL---AHEVRLSDIVDLGAAEAHEEIVACDLA 52
Query: 67 DEGSFDDAINGCQGVFH 83
D + D + C G+ H
Sbjct: 53 DAQAVHDLVKDCDGIIH 69
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 10 VTGASGYLASWLVKRLLLAGYHVTGTVRDPG--NERKLAHLWR 50
+TG +G S+L + LL GY V G VR N ++ HL++
Sbjct: 29 ITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYK 71
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 7 KVCVTGASGYLASWLVKRLLLAGYHVTGTVRDPGNERKLAHLWRLE--GAKERLQIVRAN 64
+ +TG G ++L K LL GY V G R G WRL+ G + ++I+ +
Sbjct: 5 RALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGE----FASWRLKELGIENDVKIIHMD 60
Query: 65 LMDEGSFDDAINGCQ 79
L++ + I Q
Sbjct: 61 LLEFSNIIRTIEKVQ 75
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 56/143 (39%), Gaps = 23/143 (16%)
Query: 111 VLRKK---IWYALSKILAEKAAWEFCGHNGIDL----VTILPSFVIGPS-LPPDLCSTAS 162
L+KK I YA +LA A E+ G I V V GP PD T S
Sbjct: 78 TLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQS 137
Query: 163 DVLGLLKGEKEKFQWHGRMGYVHIDDVAL-----CHILVYEHQNSHGRYLCSSTVVDNNE 217
V +E F+ R+G+ + VAL C E HG + DN+
Sbjct: 138 HV-------REVFR---RLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNSF 187
Query: 218 LVSLLSTRYPLLPIPERFELLDR 240
LL + L P E+ +L+DR
Sbjct: 188 FTQLLDEDWVLNPKVEQMQLMDR 210
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 194 ILVYEHQNSHGRYLCSSTVVDNNELVSLLST--RYPLLPIPERFEL 237
I Y +SH RYLC+ T + + + ++ + R P IPE +EL
Sbjct: 93 IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYEL 138
>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
pdb|2YPD|B Chain B, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
Length = 392
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 131 EFCGHNG-IDLVTILPSFVIGPSLPPDLCST 160
E+C G +L + LP F + P L P LCS
Sbjct: 134 EYCNPEGKFNLASHLPGFFVRPDLGPRLCSA 164
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 7 KVCVTGASGYLASWLVKRLLLAGY 30
KV VTG +GY+ S V LL AGY
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 7 KVCVTGASGYLASWLVKRLLLAGY 30
KV VTG +GY+ S V LL AGY
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 7 KVCVTGASGYLASWLVKRLLLAGY 30
KV VTG +GY+ S V LL AGY
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|1MC0|A Chain A, Regulatory Segment Of Mouse 3',5'-Cyclic Nucleotide
Phosphodiesterase 2a, Containing The Gaf A And Gaf B
Domains
Length = 368
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 168 LKGEKEKFQWHGRMGYVHIDDVA-LCHILVYEHQNSHGRYLCSSTVVDNNELVS 220
LK E + + + H+DDV+ L ++ E +N +CS ++D NELV+
Sbjct: 176 LKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQNELVA 229
>pdb|3IBJ|A Chain A, X-Ray Structure Of Pde2a
pdb|3IBJ|B Chain B, X-Ray Structure Of Pde2a
Length = 691
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 168 LKGEKEKFQWHGRMGYVHIDDVA-LCHILVYEHQNSHGRYLCSSTVVDNNELVS 220
LK E + + + H+DDV+ L ++ E +N +CS ++D NELV+
Sbjct: 176 LKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQNELVA 229
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19
Length = 224
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 7 KVCVTGASGYLASWLVKRLLLAGYHVTGTVRDP--GNERKLAHLWRLEGAKERLQIVRAN 64
K+ V GA+G S +V G+ V VRDP +R A + L KE L + A+
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATL--VKEPLVLTEAD 59
Query: 65 LMDEGSFDDAIN 76
L + DA++
Sbjct: 60 LDSVDAVVDALS 71
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 8 VCVTGASGYLASWLVKRLLLAGYHVTGTVRDPGNERKLAHLWRLEGAKERLQIVRANLMD 67
+ VTG +G++ S +V +L + V GNE E E ++V+A+L
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNE---------EFVNEAARLVKADLAA 54
Query: 68 EGSFDDAINGCQGVFHTASPVLKPSSNPKLMIFA 101
+ D + G + V+H A +NP + I A
Sbjct: 55 D-DIKDYLKGAEEVWHIA-------ANPDVRIGA 80
>pdb|3RWL|A Chain A, Structure Of P450pyr Hydroxylase
Length = 426
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 229 LPIPERFELLDRPYYEFNTSKLTSLLGFKFK 259
LP+ E F+ +DR E T L +L F F+
Sbjct: 153 LPVGEEFDWVDRVSIEITTQMLATLFDFPFE 183
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 7 KVCVTGASGYLASWLVKRLLLAGYHV 32
++ VTG +G++ S LV +L+ GY V
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEV 27
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 7 KVCVTGASGYLASWLVKRLLLAGYHV 32
++ VTG +G++ S LV +L+ GY V
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEV 27
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 10 VTGASGYLASWLVKRLLLAGYHVTGTVRDPGNERKLAHLWRLE--GAKERLQIVRANLMD 67
VTG +G ++L K LL GY V G V ++ + WRL G + +Q ++ D
Sbjct: 19 VTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR----WRLRELGIEGDIQYEDGDMAD 74
Query: 68 EGSFDDAINGCQ 79
S A+ Q
Sbjct: 75 ACSVQRAVIKAQ 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,987,560
Number of Sequences: 62578
Number of extensions: 372027
Number of successful extensions: 896
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 39
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)