Query 036096
Match_columns 440
No_of_seqs 129 out of 1300
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 1.3E-55 2.8E-60 418.6 33.1 389 27-429 44-449 (449)
2 PTZ00206 amino acid transporte 100.0 3.7E-55 8.1E-60 435.8 31.4 393 29-430 59-465 (467)
3 KOG1303 Amino acid transporter 100.0 2.8E-53 6.1E-58 410.2 33.5 406 16-431 24-436 (437)
4 PLN03074 auxin influx permease 100.0 2.3E-48 5.1E-53 385.1 34.0 392 27-440 43-462 (473)
5 PF01490 Aa_trans: Transmembra 100.0 3.8E-53 8.1E-58 419.8 -0.9 393 28-426 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 1.5E-44 3.2E-49 348.0 25.8 393 27-432 3-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 4.1E-45 8.9E-50 326.6 8.3 397 24-437 111-522 (524)
8 COG0814 SdaC Amino acid permea 100.0 7.5E-34 1.6E-38 277.8 34.8 390 26-425 5-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 100.0 2.6E-26 5.6E-31 223.2 34.6 372 28-418 1-391 (394)
10 PRK10483 tryptophan permease; 100.0 1.3E-25 2.8E-30 216.1 33.4 376 26-420 7-401 (414)
11 PRK09664 tryptophan permease T 100.0 2.4E-25 5.3E-30 213.9 33.5 376 28-421 7-403 (415)
12 TIGR00837 araaP aromatic amino 100.0 9.7E-26 2.1E-30 221.1 28.8 345 35-398 2-360 (381)
13 PRK15132 tyrosine transporter 99.9 1.6E-24 3.4E-29 209.7 33.4 368 31-420 4-390 (403)
14 PRK13629 threonine/serine tran 99.9 2.3E-23 5.1E-28 200.2 31.9 383 36-423 25-440 (443)
15 TIGR00814 stp serine transport 99.9 6E-22 1.3E-26 192.3 26.9 374 34-415 7-396 (397)
16 PRK10655 potE putrescine trans 99.8 2.9E-17 6.3E-22 164.1 37.1 354 26-398 4-377 (438)
17 KOG1287 Amino acid transporter 99.8 4.1E-18 8.9E-23 164.3 29.3 359 24-402 8-391 (479)
18 PRK10435 cadB lysine/cadaverin 99.8 2.7E-17 5.8E-22 163.9 34.2 244 25-284 2-246 (435)
19 PRK15049 L-asparagine permease 99.8 8.3E-17 1.8E-21 162.6 34.6 353 25-396 25-405 (499)
20 PRK10644 arginine:agmatin anti 99.8 1.2E-16 2.7E-21 159.8 35.5 242 25-282 5-248 (445)
21 PRK10249 phenylalanine transpo 99.8 5.4E-16 1.2E-20 155.4 36.3 351 25-396 18-394 (458)
22 TIGR00905 2A0302 transporter, 99.8 9.4E-16 2E-20 154.5 37.5 357 26-398 5-385 (473)
23 PRK11387 S-methylmethionine tr 99.8 6.4E-16 1.4E-20 155.7 35.7 354 25-397 11-392 (471)
24 TIGR03810 arg_ornith_anti argi 99.8 1.6E-15 3.5E-20 152.6 36.0 356 28-398 1-381 (468)
25 TIGR00909 2A0306 amino acid tr 99.8 6.6E-16 1.4E-20 154.1 32.6 350 27-396 2-375 (429)
26 PRK11021 putative transporter; 99.8 4.6E-15 9.9E-20 147.0 37.9 344 30-398 1-363 (410)
27 PRK10746 putative transport pr 99.8 4E-15 8.7E-20 149.1 36.5 354 26-398 8-389 (461)
28 PRK11049 D-alanine/D-serine/gl 99.8 3.1E-15 6.7E-20 150.5 34.7 354 25-397 17-399 (469)
29 TIGR00906 2A0303 cationic amin 99.8 2E-15 4.4E-20 154.1 33.7 358 25-397 25-411 (557)
30 TIGR01773 GABAperm gamma-amino 99.8 4.7E-15 1E-19 148.8 35.4 351 25-396 9-387 (452)
31 PRK10238 aromatic amino acid t 99.8 4.8E-15 1E-19 148.5 35.3 352 25-397 9-386 (456)
32 PRK10580 proY putative proline 99.8 9.7E-15 2.1E-19 146.6 35.8 239 25-280 6-254 (457)
33 PRK11357 frlA putative fructos 99.7 4E-15 8.6E-20 149.0 32.2 243 25-281 5-251 (445)
34 PRK10836 lysine transporter; P 99.7 1.2E-14 2.7E-19 147.0 35.7 351 25-396 12-398 (489)
35 COG1113 AnsP Gamma-aminobutyra 99.7 2.5E-15 5.4E-20 142.8 27.8 352 25-397 10-389 (462)
36 TIGR00911 2A0308 L-type amino 99.7 1E-14 2.3E-19 148.1 33.3 248 24-284 38-294 (501)
37 TIGR00913 2A0310 amino acid pe 99.7 6E-14 1.3E-18 141.8 37.3 350 27-396 1-391 (478)
38 TIGR00908 2A0305 ethanolamine 99.7 6.4E-14 1.4E-18 140.2 36.3 238 26-279 5-245 (442)
39 TIGR00930 2a30 K-Cl cotranspor 99.7 3.3E-14 7.1E-19 151.8 33.8 246 25-279 73-334 (953)
40 PRK10197 gamma-aminobutyrate t 99.7 8.2E-14 1.8E-18 139.2 32.9 338 38-396 2-367 (446)
41 PF13520 AA_permease_2: Amino 99.7 1.1E-13 2.4E-18 138.0 32.5 350 30-398 1-376 (426)
42 TIGR00912 2A0309 spore germina 99.7 4.2E-14 9.2E-19 137.6 27.8 336 28-395 1-352 (359)
43 COG0531 PotE Amino acid transp 99.6 1.1E-12 2.3E-17 132.5 34.0 360 24-397 8-389 (466)
44 COG0833 LysP Amino acid transp 99.6 2.7E-12 5.8E-17 124.9 31.0 353 25-396 41-427 (541)
45 TIGR03428 ureacarb_perm permea 99.6 9E-11 1.9E-15 118.5 37.8 252 25-285 10-273 (475)
46 KOG1286 Amino acid transporter 99.5 6.7E-13 1.5E-17 133.2 21.6 363 24-396 26-422 (554)
47 TIGR03813 put_Glu_GABA_T putat 99.5 1.7E-10 3.6E-15 116.6 34.8 352 29-396 2-384 (474)
48 TIGR00907 2A0304 amino acid pe 99.5 2.4E-10 5.2E-15 115.7 35.7 245 25-277 9-269 (482)
49 TIGR00910 2A0307_GadC glutamat 99.5 7.7E-11 1.7E-15 119.5 31.9 237 26-279 2-248 (507)
50 PRK15238 inner membrane transp 99.5 5.1E-10 1.1E-14 113.6 36.1 244 26-280 5-266 (496)
51 PF03845 Spore_permease: Spore 99.4 1.3E-10 2.7E-15 111.3 24.7 284 29-336 1-295 (320)
52 PF00324 AA_permease: Amino ac 99.3 2E-11 4.4E-16 123.4 12.1 238 37-287 4-262 (478)
53 KOG1289 Amino acid transporter 99.0 4.3E-07 9.4E-12 88.9 26.6 254 25-286 45-313 (550)
54 TIGR00800 ncs1 NCS1 nucleoside 98.9 7.7E-06 1.7E-10 81.8 30.7 298 27-335 11-329 (442)
55 COG3949 Uncharacterized membra 98.8 1.1E-05 2.4E-10 74.2 26.3 140 34-186 7-149 (349)
56 PRK11375 allantoin permease; P 98.7 0.00013 2.9E-09 73.5 32.7 299 25-336 22-344 (484)
57 KOG3832 Predicted amino acid t 98.6 3.4E-07 7.4E-12 77.7 10.9 208 33-246 15-299 (319)
58 TIGR02119 panF sodium/pantothe 98.6 0.00036 7.8E-09 70.5 34.0 154 26-192 38-197 (471)
59 PRK09442 panF sodium/panthothe 98.6 0.0011 2.4E-08 67.2 36.4 155 26-191 39-197 (483)
60 TIGR00813 sss transporter, SSS 98.5 0.00026 5.7E-09 70.1 30.2 150 27-188 2-152 (407)
61 PRK12488 acetate permease; Pro 98.5 0.0014 3.1E-08 67.4 35.7 151 27-190 66-218 (549)
62 COG1457 CodB Purine-cytosine p 98.5 0.00062 1.3E-08 66.6 30.3 259 97-383 84-348 (442)
63 TIGR00796 livcs branched-chain 98.4 0.0011 2.4E-08 64.3 30.4 315 38-391 3-344 (378)
64 TIGR02358 thia_cytX probable h 98.4 0.0018 3.8E-08 63.6 32.1 251 58-334 26-277 (386)
65 PF00474 SSF: Sodium:solute sy 98.4 0.00016 3.5E-09 71.6 24.8 151 27-189 5-157 (406)
66 TIGR02121 Na_Pro_sym sodium/pr 98.3 0.0043 9.2E-08 63.0 33.5 154 27-189 35-193 (487)
67 TIGR02711 symport_actP cation/ 98.3 0.007 1.5E-07 62.3 35.1 149 27-188 66-216 (549)
68 TIGR03648 Na_symport_lg probab 98.3 0.0079 1.7E-07 62.0 34.0 151 26-188 30-181 (552)
69 PRK10484 putative transporter; 98.2 0.0088 1.9E-07 61.3 31.9 156 26-189 36-198 (523)
70 PRK15419 proline:sodium sympor 98.2 0.012 2.6E-07 60.0 33.1 153 26-188 38-196 (502)
71 COG0591 PutP Na+/proline sympo 98.2 0.012 2.6E-07 59.7 33.4 151 27-188 37-191 (493)
72 PRK09395 actP acetate permease 98.1 0.016 3.4E-07 59.8 36.6 149 27-188 68-218 (551)
73 PRK11017 codB cytosine permeas 98.0 0.02 4.3E-07 56.6 29.9 174 94-287 71-245 (404)
74 COG1953 FUI1 Cytosine/uracil/t 97.9 0.032 6.9E-07 55.1 29.8 293 93-398 102-416 (497)
75 TIGR00835 agcS amino acid carr 97.9 0.015 3.3E-07 57.0 25.4 146 28-187 45-200 (425)
76 PF02133 Transp_cyt_pur: Perme 97.7 0.0014 3E-08 65.7 16.1 243 26-283 5-259 (440)
77 PF05525 Branch_AA_trans: Bran 97.6 0.057 1.2E-06 53.1 24.3 327 33-394 6-353 (427)
78 KOG1288 Amino acid transporter 97.5 0.0062 1.4E-07 61.5 17.2 55 221-280 295-349 (945)
79 COG1914 MntH Mn2+ and Fe2+ tra 97.5 0.11 2.4E-06 51.0 29.7 134 27-175 14-149 (416)
80 PF02554 CstA: Carbon starvati 97.3 0.015 3.3E-07 55.2 15.6 147 27-185 49-196 (376)
81 PF01566 Nramp: Natural resist 97.3 0.22 4.7E-06 48.5 25.1 81 95-184 43-125 (358)
82 PF01235 Na_Ala_symp: Sodium:a 97.2 0.27 5.9E-06 48.2 25.0 160 25-195 14-182 (416)
83 PRK00701 manganese transport p 97.1 0.33 7.2E-06 48.4 30.3 43 95-138 95-137 (439)
84 COG4147 DhlC Predicted symport 97.1 0.31 6.7E-06 47.8 27.0 238 28-283 41-294 (529)
85 COG0733 Na+-dependent transpor 96.9 0.48 1E-05 46.4 28.2 240 29-280 8-269 (439)
86 PRK15015 carbon starvation pro 96.5 0.059 1.3E-06 54.8 13.7 102 31-136 84-186 (701)
87 KOG2083 Na+/K+ symporter [Inor 96.2 0.032 7E-07 55.8 9.4 234 30-277 30-275 (643)
88 KOG2082 K+/Cl- cotransporter K 95.9 2.6 5.6E-05 43.9 22.6 95 37-135 122-219 (1075)
89 COG1115 AlsT Na+/alanine sympo 95.9 1.9 4.2E-05 42.3 25.7 330 25-378 58-421 (452)
90 COG4145 PanF Na+/panthothenate 95.6 2.2 4.7E-05 40.7 31.5 159 27-198 38-202 (473)
91 TIGR00796 livcs branched-chain 94.9 0.72 1.6E-05 44.9 13.7 79 93-180 254-332 (378)
92 COG1966 CstA Carbon starvation 94.7 5.3 0.00011 40.3 29.5 103 30-136 52-155 (575)
93 PRK15433 branched-chain amino 94.4 5.9 0.00013 39.3 23.5 325 31-393 9-355 (439)
94 PF05525 Branch_AA_trans: Bran 94.2 2.1 4.6E-05 42.3 15.2 72 95-175 262-333 (427)
95 KOG2466 Uridine permease/thiam 93.8 7.8 0.00017 38.5 18.3 254 25-296 51-331 (572)
96 KOG2349 Na+:iodide/myo-inosito 93.6 4.4 9.6E-05 41.5 16.4 237 27-284 44-298 (585)
97 COG1114 BrnQ Branched-chain am 90.3 7 0.00015 38.1 12.8 77 95-180 264-340 (431)
98 PF02028 BCCT: BCCT family tra 87.0 37 0.00081 34.4 28.4 165 26-192 71-259 (485)
99 PRK15433 branched-chain amino 85.5 9.5 0.00021 37.9 10.8 65 96-169 267-331 (439)
100 COG0814 SdaC Amino acid permea 83.4 50 0.0011 32.8 20.4 282 107-398 81-377 (415)
101 PHA02764 hypothetical protein; 77.5 66 0.0014 30.5 23.4 93 25-122 9-104 (399)
102 COG1292 BetT Choline-glycine b 75.2 58 0.0013 33.1 12.3 155 30-188 88-268 (537)
103 PF00209 SNF: Sodium:neurotran 68.6 1.5E+02 0.0032 30.5 30.9 107 166-278 193-302 (523)
104 TIGR01197 nramp NRAMP (natural 65.5 1.4E+02 0.0031 29.3 29.6 75 95-178 65-141 (390)
105 KOG1289 Amino acid transporter 64.0 1.3E+02 0.0029 30.7 12.1 46 95-141 326-371 (550)
106 COG1114 BrnQ Branched-chain am 59.5 1.9E+02 0.0041 28.6 25.2 323 33-393 8-354 (431)
107 PF02468 PsbN: Photosystem II 49.9 17 0.00037 23.0 2.2 28 261-288 4-31 (43)
108 PF02028 BCCT: BCCT family tra 48.4 1.7E+02 0.0036 29.8 10.2 57 128-184 405-465 (485)
109 PRK13183 psbN photosystem II r 48.3 17 0.00036 23.3 2.0 29 260-288 6-34 (46)
110 CHL00020 psbN photosystem II p 47.0 14 0.00031 23.2 1.5 28 261-288 4-31 (43)
111 PLN02680 carbon-monoxide oxyge 46.3 2.2E+02 0.0049 25.6 11.5 96 218-325 48-143 (232)
112 TIGR00842 bcct choline/carniti 43.0 3.7E+02 0.0079 27.1 24.0 160 28-188 35-218 (453)
113 KOG3660 Sodium-neurotransmitte 41.9 4.5E+02 0.0097 27.8 19.3 50 30-79 38-88 (629)
114 PF05805 L6_membrane: L6 membr 40.6 95 0.0021 27.1 6.1 65 367-431 43-117 (195)
115 KOG1277 Endosomal membrane pro 33.9 5E+02 0.011 26.1 12.0 19 264-282 559-577 (593)
116 TIGR00906 2A0303 cationic amin 32.6 5.8E+02 0.013 26.4 19.0 85 104-188 308-399 (557)
117 cd08766 Cyt_b561_ACYB-1_like P 29.3 1.8E+02 0.0039 24.1 5.9 66 258-325 39-104 (144)
118 CHL00182 tatC Sec-independent 29.2 3.9E+02 0.0086 24.4 8.7 39 298-336 74-112 (249)
119 cd08764 Cyt_b561_CG1275_like N 28.2 4.3E+02 0.0093 23.5 10.6 67 259-325 57-123 (214)
120 PF08019 DUF1705: Domain of un 28.2 3.5E+02 0.0076 22.5 9.6 20 378-397 70-89 (156)
121 PRK09950 putative transporter; 27.4 6.9E+02 0.015 25.6 26.6 162 27-189 81-266 (506)
122 KOG4812 Golgi-associated prote 27.3 1.3E+02 0.0027 27.2 4.7 22 403-424 222-243 (262)
123 PRK09928 choline transport pro 25.8 8.4E+02 0.018 26.1 12.5 140 60-200 358-500 (679)
124 PF00689 Cation_ATPase_C: Cati 22.5 90 0.0019 26.6 3.1 51 226-281 19-69 (182)
125 PF11188 DUF2975: Protein of u 21.9 2.6E+02 0.0056 22.3 5.6 11 429-439 46-56 (136)
126 PRK04949 putative sulfate tran 20.9 6.5E+02 0.014 23.0 12.1 53 251-307 22-75 (251)
127 COG1292 BetT Choline-glycine b 20.6 8.3E+02 0.018 25.1 9.6 61 124-184 414-478 (537)
128 PF05915 DUF872: Eukaryotic pr 20.4 2.6E+02 0.0056 22.1 5.0 22 32-53 41-62 (115)
129 PRK10263 DNA translocase FtsK; 20.2 1.4E+03 0.031 26.6 15.0 22 262-283 25-46 (1355)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-55 Score=418.61 Aligned_cols=389 Identities=20% Similarity=0.295 Sum_probs=343.2
Q ss_pred ccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhc---cCCcccccHHHHHHHH
Q 036096 27 SRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEM---VPGKRFDRYYELGQHA 103 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~---~~~~~~~~y~~~~~~~ 103 (440)
++..|..++..|+.++++|+|+|++|+||+++|++.|.+..++++.++.||++.+++|... ..+....+|.+.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999998753 2222356777776555
Q ss_pred ----------hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcc
Q 036096 104 ----------FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFN 173 (440)
Q Consensus 104 ----------~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 173 (440)
+|| ++|.+++..+.+.++|.|++|+++++++++++.+.. .....+.+.|+.+..+..++++++|+++
T Consensus 124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--~~~~~s~~~~i~~~~~~~lll~~Ir~Lk 200 (449)
T KOG1304|consen 124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--SPGVLSVRLYILIQLPPLLLLNLIRNLK 200 (449)
T ss_pred HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--CCCCccHHHHHHHHHHHHHHHHHHHhhH
Confidence 455 677999999999999999999999999999999832 2345678889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCC
Q 036096 174 SVAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKP 253 (440)
Q Consensus 174 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p 253 (440)
.+..+|.++.++.++.+.++.++.+.... ..+..+...++.++..++|+.+|||+|+.++.|++++| |+|
T Consensus 201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~P 270 (449)
T KOG1304|consen 201 ILSPFSLFANVFILVGLAIIMYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KKP 270 (449)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhccC------CccccccccchhhhHHHHHHHHHHhccceEEEehhhcc----cCh
Confidence 99999999999887767666666554432 11223345568899999999999999999999999999 899
Q ss_pred CCCCch-hhhhHHHHHHHHHHHhHHhHHHhhcCCCchhHHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 036096 254 SKKPMW-KGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAF 332 (440)
Q Consensus 254 ~~~~~~-~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 332 (440)
+++.-+ .++..++.+++++|..+|++||++||+++++.++.|+|+ +++...+++++++.+..+||++++|..+.+++.
T Consensus 271 ~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~ 349 (449)
T KOG1304|consen 271 QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG 349 (449)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh
Confidence 875422 778899999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HhhhcCCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCC---CchhHHHHHH
Q 036096 333 LVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRR---FSLSWITNWF 409 (440)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~~---~~~~~~~~~~ 409 (440)
+.++.+.++++.....+|..+++++..+|..+|+++.+++++|+++++.+.+++|++++++..+++. .+|+.+.+.+
T Consensus 350 i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~ 429 (449)
T KOG1304|consen 350 IRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIV 429 (449)
T ss_pred HHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHH
Confidence 8888766567788899999999999999999999999999999999999999999999999987655 4688899999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036096 410 CIIVGVALMILAPIGGLRAL 429 (440)
Q Consensus 410 ~~~~g~~~~~~g~~~~i~~i 429 (440)
++++|++.++.|+|.+++|+
T Consensus 430 l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 430 LIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999999874
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=3.7e-55 Score=435.83 Aligned_cols=393 Identities=16% Similarity=0.210 Sum_probs=321.9
Q ss_pred CCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccch
Q 036096 29 NAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKL 108 (440)
Q Consensus 29 ~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~ 108 (440)
..+..++++|++|+++|+|+|++|++|+++||++|++++++++.++.|+.+++.+++++. + ..+|+|++++++|| +
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~-~--~~sY~~la~~~~G~-~ 134 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT-N--IRTYEGVARVLLGP-W 134 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C--CCCHHHHHHHHhCH-H
Confidence 456789999999999999999999999999999999999999999999999999988753 3 34999999999997 6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCC----CCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096 109 GLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSC----KDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 109 g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
|++++++.+.+.++|.|++|+++++|.++.+++...... ...++..+.++..++++|+++.|++++++++|.+++.
T Consensus 135 g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~ 214 (467)
T PTZ00206 135 GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVS 214 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHH
Confidence 779999999999999999999999999998886432110 1123344556677788999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccc---CC---CCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCc
Q 036096 185 MSISYSVIAWVACLHKGALPNVDYG---LR---ASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPM 258 (440)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~ 258 (440)
+.+...+.+++.+..++.+++.+.. .. .....+...+.+.++++++|||.||.+++++++|| |||+.+++
T Consensus 215 ~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~~ 290 (467)
T PTZ00206 215 FMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGKF 290 (467)
T ss_pred HHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhHH
Confidence 6655454444444544443322211 00 00011122468899999999999999999999999 88888788
Q ss_pred hhhhhHHHHHHHHHHHhHHhHHHhhcCCCchhHHhhCC-CCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhhc
Q 036096 259 WKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSL-EKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKL 337 (440)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 337 (440)
.+++..++.+++++|.++|++||+.||++++++++.|+ |.++....+++++..+.++.+||+..+|+|+.+++.+..+.
T Consensus 291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~ 370 (467)
T PTZ00206 291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDA 370 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCc
Confidence 89999999999999999999999999999999999999 45677778889999999999999999999999988874332
Q ss_pred CCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHH---hcCCCCchhHHHHHHHHHHH
Q 036096 338 HFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAI---YKPRRFSLSWITNWFCIIVG 414 (440)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~---~~~~~~~~~~~~~~~~~~~g 414 (440)
+ +.+..++...+..+++.++++|+.+|+++.+++++|+++++.++|++|+++|++. ++++..+++++.++.++++|
T Consensus 371 ~-~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~G 449 (467)
T PTZ00206 371 R-KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITG 449 (467)
T ss_pred c-cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHH
Confidence 2 2233455566666777889999999999999999999999999999999999984 23333344567899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 036096 415 VALMILAPIGGLRALI 430 (440)
Q Consensus 415 ~~~~~~g~~~~i~~ii 430 (440)
++..+.|||+++++.+
T Consensus 450 v~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 450 VIAIVFGTGATIWGVT 465 (467)
T ss_pred hheEEecchhHhhHHh
Confidence 9999999999999876
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-53 Score=410.18 Aligned_cols=406 Identities=45% Similarity=0.841 Sum_probs=354.4
Q ss_pred ccccCccccccccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCcc
Q 036096 16 KALNDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMV---PGKR 92 (440)
Q Consensus 16 ~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~---~~~~ 92 (440)
+.++++.+..++|+.||+++.++.+|.++|+|+|++|+|+++.||+.|+++++..++++.||..+|.+|.+.+ +++|
T Consensus 24 ~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r 103 (437)
T KOG1303|consen 24 SDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKR 103 (437)
T ss_pred cccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 3444456667788999999999999999999999999999999999999999999999999999999988754 3556
Q ss_pred cccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCc
Q 036096 93 FDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSF 172 (440)
Q Consensus 93 ~~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l 172 (440)
+++|.|+++++||++. ++++.+.+.+.+++.++.|.+..+|++..+.+..+.++...+.+.|+++++++.+|++++|++
T Consensus 104 ~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~ 182 (437)
T KOG1303|consen 104 RYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNF 182 (437)
T ss_pred CCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCc
Confidence 7789999999999865 899999999999999999999999999999998765542355688999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-ccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCC
Q 036096 173 NSVAVVSLAAAVMSISYSVIAWVACLHKGALPNVD-YGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPE 251 (440)
Q Consensus 173 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~ 251 (440)
+.+++.|..+.++.+.+..+.+..+..+|...... .+.... .+....+++++++.|+|.||.++|+++..| |
T Consensus 183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~---~~~~~~f~a~g~iaFaf~gH~v~peIq~tM----k 255 (437)
T KOG1303|consen 183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL---GTIPTVFTALGIIAFAYGGHAVLPEIQHTM----K 255 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC---CCCcchhhhhhheeeeecCCeeeeehHhhc----C
Confidence 99999999999998888887777777766543211 111111 111111899999999999999999999999 8
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHhHHhHHHhhcCCCchhHHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Q 036096 252 KPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEA 331 (440)
Q Consensus 252 ~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 331 (440)
+|.+ |+|++.+++.+++.+|+.+++.||++|||+++++++.|+.++.|....+++++.+|++.+|..+..|..+.+|+
T Consensus 256 ~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~ 333 (437)
T KOG1303|consen 256 SPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEK 333 (437)
T ss_pred Cchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHH
Confidence 8887 66999999999999999999999999999999999999975689999999999999999999999999999999
Q ss_pred HHhhhcCC--CcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036096 332 FLVKKLHF--KPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNWF 409 (440)
Q Consensus 332 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~~~~~~~~~~~~ 409 (440)
....+.+. ++....|.+.|..+++.+.++|..+|.|+++.+++|++....+.+++|+++|++.+|+++...+++.++.
T Consensus 334 ~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~ 413 (437)
T KOG1303|consen 334 LIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWV 413 (437)
T ss_pred HhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 98765441 1345689999999999999999999999999999999999999999999999999888887778888888
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHH
Q 036096 410 C-IIVGVALMILAPIGGLRALIL 431 (440)
Q Consensus 410 ~-~~~g~~~~~~g~~~~i~~ii~ 431 (440)
+ +++|++..+.....++++++.
T Consensus 414 ~~~~~~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 414 IILVVGLLLSVLAAVGGVRSLII 436 (437)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhh
Confidence 8 788988888888888888765
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=2.3e-48 Score=385.07 Aligned_cols=392 Identities=19% Similarity=0.318 Sum_probs=321.5
Q ss_pred ccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhc----cCCc----cc--ccH
Q 036096 27 SRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEM----VPGK----RF--DRY 96 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~----~~~~----~~--~~y 96 (440)
.++.+..++.+++++..+|.|+|+||++|++.||++|++.+++.++++.|+.+++.++..+ ++.+ ++ .+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 3467888999999999999999999999999999999999999999999999999986432 2211 11 267
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhh
Q 036096 97 YELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVA 176 (440)
Q Consensus 97 ~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 176 (440)
.|+++..+||+++ .+..+...+++++.|+.|++..++.+..+- ...+++.|.+++.++..|++++|++++++
T Consensus 123 ~e~~~~~~G~~~~-~~~~~~~~v~l~~~~v~~li~~~~~~~~l~-------~~~~~~~~~~i~~~v~~~~~~i~sl~~l~ 194 (473)
T PLN03074 123 FEVLDGLLGPYWK-NVGLAFNCTFLLFGSVIQLIACASNIYYIN-------DNLDKRTWTYIFGACCATTVFIPSFHNYR 194 (473)
T ss_pred HHHHHHhcChhHH-HHHHHHHhhhhHHHHHHHHHHHhhhhhhhC-------CCcCCCeEEeehHHHHHHHHHccCHHHHH
Confidence 8999999998654 788888899999999999998777655441 24567888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCC
Q 036096 177 VVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKK 256 (440)
Q Consensus 177 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~ 256 (440)
++|.+++.+++...+.+++..+..+..++.+. ..+.++..++.++++++|+|+||.++|++++|| |||+|+
T Consensus 195 ~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~-----~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P~~F 265 (473)
T PLN03074 195 IWSFLGLLMTTYTAWYMTIAALSHGQVEGVKH-----SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKPQKF 265 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-----CCchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cChhcc
Confidence 99999988655443344444444443333221 123456678888899999999999999999999 999987
Q ss_pred CchhhhhHHHHHHHHHHHhHHhHHHhhcCCCchh--HHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHh
Q 036096 257 PMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVED--NVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLV 334 (440)
Q Consensus 257 ~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 334 (440)
+ +....+...++.+|..+++.||++|||++.+ +.+.|+|++.+ ..++++++.++++.+|++.+.|+.+.+|+...
T Consensus 266 ~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~ 342 (473)
T PLN03074 266 K--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIG 342 (473)
T ss_pred c--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 6 8888999999999999999999999998764 66777886544 57889999999999999999999999888765
Q ss_pred hhcCCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC-------------CCc
Q 036096 335 KKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPR-------------RFS 401 (440)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~-------------~~~ 401 (440)
.+ .++....|.+.|+.+++.+.++|..+|+|+.+++++|+++++.+++++|+++|++.++++ ..+
T Consensus 343 ~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ 420 (473)
T PLN03074 343 VH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPS 420 (473)
T ss_pred cc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCc
Confidence 32 234456789999999999999999999999999999999999999999999999866543 222
Q ss_pred h--hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCCC
Q 036096 402 L--SWITNWFCIIVGVAL-MILAPIGGLRALILEAKSFKFYS 440 (440)
Q Consensus 402 ~--~~~~~~~~~~~g~~~-~~~g~~~~i~~ii~~~~~~~~~~ 440 (440)
| ..+.++++++++.++ ++.|+|+++++++++.++||.|+
T Consensus 421 ~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~ 462 (473)
T PLN03074 421 WTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFA 462 (473)
T ss_pred cceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhh
Confidence 3 347899999865555 78999999999999999999874
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=3.8e-53 Score=419.79 Aligned_cols=393 Identities=29% Similarity=0.528 Sum_probs=335.8
Q ss_pred cCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccC-CcccccHHHHHHHHhcc
Q 036096 28 RNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVP-GKRFDRYYELGQHAFGE 106 (440)
Q Consensus 28 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~-~~~~~~y~~~~~~~~G~ 106 (440)
||.|++++.++++|+++|+|+|++|++++++|+++|++++++++.++.++.+++.|+.+..+ +++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999987543 33467999999999998
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 036096 107 KLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMS 186 (440)
Q Consensus 107 ~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 186 (440)
+ +++++++.+.+.+++.+++|++..+|.++++++...++ ...++..+.++..++++|+++.|+++++++.|.++.++.
T Consensus 81 ~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~ 158 (409)
T PF01490_consen 81 K-GKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI 158 (409)
T ss_pred c-ccccccchheeccccccceeEEEeeeeeeccccccccc-ccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence 5 56999999999999999999999999999999875432 245777888888999999999999999999999999965
Q ss_pred HHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCC-CCchhhhhHH
Q 036096 187 ISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSK-KPMWKGVVIA 265 (440)
Q Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~-~~~~~~~~~s 265 (440)
+..+.+.+.........++.+...+......++.+++.++++.+|+|.||+++|++++|| |+|+| +++.++...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~~~~s 234 (409)
T PF01490_consen 159 FYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKVLSIS 234 (409)
T ss_pred ceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccceeeeeh
Confidence 542222222222222222222222212234567799999999999999999999999999 88887 5677999999
Q ss_pred HHHHHHHHHhHHhHHHhhcCCCchhHHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhh--------c
Q 036096 266 YLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKK--------L 337 (440)
Q Consensus 266 ~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--------~ 337 (440)
+.+++++|.++|+.||++||+++++|++.|++++++...++++++.++++.+||+..+|.++.+++.+.+. .
T Consensus 235 ~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~ 314 (409)
T PF01490_consen 235 MIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK 314 (409)
T ss_pred hhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccc
Confidence 99999999999999999999999999999999878888999999999999999999999999999998753 1
Q ss_pred CCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCchhH-----HHHHHHHH
Q 036096 338 HFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSW-----ITNWFCII 412 (440)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~~~~~~~-----~~~~~~~~ 412 (440)
+.+.++.+|...|+.++..+.++|..+|+++++++++|++++..++|++|+++|++.+++++.+.++ ...+..++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (409)
T PF01490_consen 315 NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIV 394 (409)
T ss_pred cccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEE
Confidence 2344567889999999999999999999999999999999999999999999999998877644332 44788889
Q ss_pred HHHHHHHHHHHHHH
Q 036096 413 VGVALMILAPIGGL 426 (440)
Q Consensus 413 ~g~~~~~~g~~~~i 426 (440)
+|++.++.|+|+++
T Consensus 395 ~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 395 FGVVLMVFGTYQSI 408 (409)
T ss_pred EeeehhHHhHHHHc
Confidence 99999999999875
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-44 Score=348.00 Aligned_cols=393 Identities=22% Similarity=0.325 Sum_probs=331.7
Q ss_pred ccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhcc
Q 036096 27 SRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGE 106 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~ 106 (440)
+++.|.+.+++++.|+++|+|++++|++|++.|.+.|++++.++++++.++.+++.++.++.++ + +|+++++..+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-~--ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-R--TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-C--CHHHHHHHHcCC
Confidence 4667889999999999999999999999999999999999999999999999999999886543 2 999999999996
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCC----Cccchh-hHHHHHHHHHHHhcCCCcchhhHHHHH
Q 036096 107 KLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCK----DIRLTY-FIMIFASVHFVLSHLPSFNSVAVVSLA 181 (440)
Q Consensus 107 ~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~----~~~~~~-~~~i~~~i~~pl~~~~~l~~l~~~s~~ 181 (440)
.|+....+.......| +++|++.++|.++.+.......++ ..+++. +.+....+++|+++.|+++++++.|.+
T Consensus 80 -~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~ 157 (411)
T KOG1305|consen 80 -LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSAL 157 (411)
T ss_pred -CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6767666666666666 799999999999977765543222 134444 577788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhh
Q 036096 182 AAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKG 261 (440)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~ 261 (440)
+...++..++++++..+.... ..... ....+....+.+.+.++++++|+|.||+|..++++|| |||+++++.++
T Consensus 158 s~~~~~~fv~~vv~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i~~v 231 (411)
T KOG1305|consen 158 SLASVVYFVVLVVYKYFQGPC-ALGRL-SYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKIQRV 231 (411)
T ss_pred HHHHHHHHHHHHHHHHHhccc-ccCCc-ccccCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHHHHH
Confidence 999877666666655554322 00000 0111122233689999999999999999999999999 99999999999
Q ss_pred hhHHHHHHHHHHHhHHhHHHhhcCCCchhHHhhCCCCchH------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhh
Q 036096 262 VVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRW------LIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVK 335 (440)
Q Consensus 262 ~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 335 (440)
...+...++.+|..+|.+||+.||+++.+|++.++++.+- ....++..+.++++..+|+..+|+|..+++...+
T Consensus 232 ~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~ 311 (411)
T KOG1305|consen 232 SNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFP 311 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcc
Confidence 9999999999999999999999999999999999976432 3578999999999999999999999998887766
Q ss_pred hcCC--CcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 036096 336 KLHF--KPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNWFCIIV 413 (440)
Q Consensus 336 ~~~~--~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~~~~~~~~~~~~~~~~ 413 (440)
+... +.+..++.+.+..++....+.|+.+|+++.++.++|++++..++|++|+++|++..|+ +.+++...+...++
T Consensus 312 ~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~ 389 (411)
T KOG1305|consen 312 YQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLIL 389 (411)
T ss_pred cCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHH
Confidence 5432 3566788899999999999999999999999999999999999999999999998876 55677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036096 414 GVALMILAPIGGLRALILE 432 (440)
Q Consensus 414 g~~~~~~g~~~~i~~ii~~ 432 (440)
++...+.|+...+.++..+
T Consensus 390 ~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 390 GVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998865
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-45 Score=326.65 Aligned_cols=397 Identities=19% Similarity=0.246 Sum_probs=347.3
Q ss_pred cccccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCc-----ccccHHH
Q 036096 24 ITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGK-----RFDRYYE 98 (440)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~-----~~~~y~~ 98 (440)
++.+.+++.+|+..|+.|++-|.=+++||+|....|++ ++..++.++.++.|+..+|++|..+.+.+ .+.+|-+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 45567899999999999999999999999999998886 99999999999999999999997643211 1679999
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHH
Q 036096 99 LGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVV 178 (440)
Q Consensus 99 ~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 178 (440)
++...++|+.|-..+.+.+.+.....|+.|++..+|.+...++.. +.++.-|+++....++|..++++++....+
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----svd~~sWm~i~~a~LLpc~FLk~Lk~VS~l 264 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----SVDKASWMMITSASLLPCSFLKDLKIVSRL 264 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----CccccchhhhhhHHHhhhHHHHHHHHHHHH
Confidence 999999999887778999999999999999999999988887653 578889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCc
Q 036096 179 SLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPM 258 (440)
Q Consensus 179 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~ 258 (440)
|..+++.-+++-++++.+|..... ++.|......-+...++..+++++|+|..|.-.|+++.+| +||++++
T Consensus 265 Sf~ct~sH~viN~i~v~YCLs~~~----dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn- 335 (524)
T KOG4303|consen 265 SFFCTISHLVINLIMVLYCLSFVS----DWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN- 335 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----hccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc----CChhHhe-
Confidence 999998777766667777765432 4455444444566788899999999999999999999999 9999988
Q ss_pred hhhhhHHHHHHHHHHHhHHhHHHhhcCCCchhHHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhhcC
Q 036096 259 WKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKLH 338 (440)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 338 (440)
..+-++-+...++-..+|..||++||+.++..|.+|+|+ .....++++++.+.-+.+||+-++...+.+|+.+.....
T Consensus 336 -~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p 413 (524)
T KOG4303|consen 336 -VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYP 413 (524)
T ss_pred -eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCC
Confidence 557899999999999999999999999999999999986 446789999999999999999999999999998776542
Q ss_pred CC----------cchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036096 339 FK----------PTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNW 408 (440)
Q Consensus 339 ~~----------~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~~~~~~~~~~~ 408 (440)
+. .-+.|...+|..+++.+++.|+.+|+|..+++++|++.++.++|++|++++++++++.....++.+..
T Consensus 414 ~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~ 493 (524)
T KOG4303|consen 414 QTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQ 493 (524)
T ss_pred CCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhhe
Confidence 21 12456678999999999999999999999999999999999999999999999998887777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 036096 409 FCIIVGVALMILAPIGGLRALILEAKSFK 437 (440)
Q Consensus 409 ~~~~~g~~~~~~g~~~~i~~ii~~~~~~~ 437 (440)
.+++.|+.+++.|.|.+..++++++++..
T Consensus 494 ~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~ 522 (524)
T KOG4303|consen 494 GIIIMGCSVCVSGVYFSSMELIRAINSAD 522 (524)
T ss_pred eEEEEeeeEEEEeEehhhHHHHHHHhccC
Confidence 99999999999999999999999988754
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=7.5e-34 Score=277.75 Aligned_cols=390 Identities=19% Similarity=0.249 Sum_probs=298.3
Q ss_pred cccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhc
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFG 105 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 105 (440)
.+++.+..++++++.++++|+|+|++|++++..|++++++++++.+.+++++.+++.|+..+.|+. +.++.+++++.+|
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~-~~~~~~~~~~~~G 83 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG-KASITSLVEDYLG 83 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cccHHHHHHHHhC
Confidence 456677899999999999999999999999999999999999999999999999999999877653 2599999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 036096 106 EKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVM 185 (440)
Q Consensus 106 ~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (440)
|+++ ++.++.+.+.+++.+.+|.+..+|.+++++++..+..+ .+|..+.+++..++.++++.++...++..+.+....
T Consensus 84 ~~~~-~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~-~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 84 KKGG-ILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP-LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred cchH-HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC-cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 8655 99999999999999999999999999999997554332 677888888888889999999999999999998885
Q ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHH
Q 036096 186 SISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIA 265 (440)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s 265 (440)
.+..++. .++..-+.+.++. ...+... +..+..+..++|+++|||.||+++|++.+|| |++++++.+|+..++
T Consensus 162 v~~~~~l-~~~~~~~~~~~~l-~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~~~~~~~~k~~~~~ 234 (415)
T COG0814 162 VIYLVLL-VVYLIPHWNPANL-FALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAILIG 234 (415)
T ss_pred HHHHHHH-HHHHhcccCHHHH-hcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHh----ccchhHHHHHHHHHH
Confidence 5443333 3332322211111 1111111 3577899999999999999999999999999 666654577999999
Q ss_pred HHHHHHHHHhHHhHHHhhcCCCchhHHhhCCCCchH-------------HHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 036096 266 YLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRW-------------LIAAANLFVVVHVIGSYQVYAMPVFDMLEAF 332 (440)
Q Consensus 266 ~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~-------------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 332 (440)
..+..++|...++++|..+|+.+.++++.+.++++. .....+++..+.+.+++--.-...++..++.
T Consensus 235 ~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~ 314 (415)
T COG0814 235 SLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADL 314 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHH
Confidence 999999999999999999999999999999876432 3334555555666666666666677777777
Q ss_pred HhhhcCCCcc----hhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036096 333 LVKKLHFKPT----MILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNW 408 (440)
Q Consensus 333 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~~~~~~~~~~~ 408 (440)
+++...++.+ ..............+...+...|..+.+.+.+|+.....+.++.|...+.+....+..+.++...+
T Consensus 315 ~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~ 394 (415)
T COG0814 315 FKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLL 394 (415)
T ss_pred HHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHH
Confidence 7652111111 112222333445566667777788888888888888888888888777766554444444335788
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036096 409 FCIIVGVALMILAPIGG 425 (440)
Q Consensus 409 ~~~~~g~~~~~~g~~~~ 425 (440)
+++++|+..+..-.+..
T Consensus 395 ~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 395 LVLLFGILVILSPFLAT 411 (415)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888877766644
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.96 E-value=2.6e-26 Score=223.23 Aligned_cols=372 Identities=19% Similarity=0.252 Sum_probs=269.1
Q ss_pred cCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccc
Q 036096 28 RNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEK 107 (440)
Q Consensus 28 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~ 107 (440)
++.+.+++++.+.++++|+|+|+||.+.+..|..++.+.+++.+.++++++.++.|...+.++ ..++.+++++.+||+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~--~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE--GSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhChH
Confidence 356788999999999999999999999999999999999999999999999999998876554 449999999999985
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHH
Q 036096 108 LGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSI 187 (440)
Q Consensus 108 ~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 187 (440)
|+++..+.+.+..++.+.+|..-.++.++++++...+ .+.++.....++.++...+... +-+....++.+-+...+
T Consensus 79 -g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 79 -GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--TDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMI 154 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 5599999999999999999999999999999987542 2233344444444443333333 23344444444443333
Q ss_pred HHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHHHH
Q 036096 188 SYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYL 267 (440)
Q Consensus 188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~ 267 (440)
..........+.+.+.++... ..+.+.++...+.++|+.++||..|.++|++.+.++ +|++ +.+|++.++..
T Consensus 155 ~~~~~l~~~~~p~~~~~~L~~---~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~~--k~~~ai~~Gs~ 226 (394)
T PF03222_consen 155 ISFIILVVYLIPHWNPSNLLD---APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDPK--KIRKAIIIGSL 226 (394)
T ss_pred HHHHHHHHHHhhhcCHHHhhc---cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccHH--HHHHHHHHHHH
Confidence 333333333332222222111 122346788999999999999999999999999994 3444 45699999999
Q ss_pred HHHHHHHhHHhHHHh-----------hcCCCchh--HHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHh
Q 036096 268 LVAFCYFPVAMVGYW-----------AFGNQVED--NVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLV 334 (440)
Q Consensus 268 ~~~~~y~~~g~~gy~-----------~fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 334 (440)
+..++|++.-+.... ..+++..+ ..+.+..++.+...+..++..+.+.+||--.....+|.+.|.++
T Consensus 227 i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k 306 (394)
T PF03222_consen 227 IPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFK 306 (394)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999875333222 12222222 23444445567778889999999999999999999999999987
Q ss_pred hhcCCCcchhhhhhhHHHHHHHHHHHHhhccc-hhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCc-h----hHHHHH
Q 036096 335 KKLHFKPTMILRFLTRTIYVGFTMFIAMTFPF-FGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFS-L----SWITNW 408 (440)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~~~~-~----~~~~~~ 408 (440)
.+++ ...|.........+++++|...|+ |...+++.| ...+.+..++|+++.+|.|++++.+ + .+....
T Consensus 307 ~~~~----~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~ 381 (394)
T PF03222_consen 307 LKNN----SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLL 381 (394)
T ss_pred CCcc----ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHH
Confidence 6322 123344455667788999999887 679999999 8889999999999999998766533 2 345555
Q ss_pred HHHHHHHHHH
Q 036096 409 FCIIVGVALM 418 (440)
Q Consensus 409 ~~~~~g~~~~ 418 (440)
.++++|+.+.
T Consensus 382 ~~~~~~i~ii 391 (394)
T PF03222_consen 382 LVIIFGILII 391 (394)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.96 E-value=1.3e-25 Score=216.07 Aligned_cols=376 Identities=14% Similarity=0.092 Sum_probs=267.6
Q ss_pred cccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhc
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFG 105 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 105 (440)
++++.+.+++++.+.++++|+|+|++|.+.++.|..+++++++++|.+..+|..++.|...+.++ ..++..++|+.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~--g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI--GSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHcC
Confidence 46778999999999999999999999999999999999999999999999999999999776554 4489999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 036096 106 EKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVM 185 (440)
Q Consensus 106 ~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (440)
| .|+.+.++.+.+..|+.+.+|+.-.++.+++.++.. + .+.+++.-.+++.++.-.+.+. ..+...+++.+-+..
T Consensus 85 ~-~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~--~~i~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~~ 159 (414)
T PRK10483 85 K-GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-S--LNVPARAAGFGFALLVAFVVWL-STKAVSRMTAIVLGA 159 (414)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-C--CCCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 7 577999999999999999999999999999998762 1 1234555556666665555554 234444444443333
Q ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHH
Q 036096 186 SISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIA 265 (440)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s 265 (440)
+++..+..+.....+.+.++.. +.+ ......+...+.++++.++||..|+++|++.++++ +|++ +.+|++.++
T Consensus 160 ~i~~f~~~~~~l~~~i~~~~L~-~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--kir~~I~iG 232 (414)
T PRK10483 160 KVITFFLTFGSLLGHVQPATLF-NVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TIVKCLVYG 232 (414)
T ss_pred HHHHHHHHHHHHHhhcCHHHHh-ccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HHHHHHHHH
Confidence 3222222222222222111111 000 11122355688999999999999999999999984 3444 566999999
Q ss_pred HHHHHHHHHhHHhHHHhh-----------cCCCchh--HHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 036096 266 YLLVAFCYFPVAMVGYWA-----------FGNQVED--NVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAF 332 (440)
Q Consensus 266 ~~~~~~~y~~~g~~gy~~-----------fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 332 (440)
..+..++|++--...... -|++.+. +.+.+..++.+...+..++..+.+.+||--.....+|.+.|.
T Consensus 233 s~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~ 312 (414)
T PRK10483 233 TLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADL 312 (414)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998853332222 2333221 112222233456677888999999999999999999999999
Q ss_pred HhhhcCCCcchhhhhhhHHHHHHHHHHHHhhccc-hhHHHHHhhhhhhhhHHHHHHHHHHHHHhcC-CCCch----hHHH
Q 036096 333 LVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPF-FGGLLSFFGGLAFAPTTYYIPCIIWLAIYKP-RRFSL----SWIT 406 (440)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~-~~~~~----~~~~ 406 (440)
++.+++ ...|.....+.++++++++...|+ |-..++++|.. ...+.-++|+++.++.||+ +...+ .+..
T Consensus 313 ~k~~~~----~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~ 387 (414)
T PRK10483 313 FGFDDS----AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPM 387 (414)
T ss_pred hCCCCc----cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHH
Confidence 875532 223445556788899999999998 77899999976 6788889999999999876 22222 2333
Q ss_pred HHHHHHHHHHHHHH
Q 036096 407 NWFCIIVGVALMIL 420 (440)
Q Consensus 407 ~~~~~~~g~~~~~~ 420 (440)
...++++|+...+.
T Consensus 388 l~~~~~~g~~~i~~ 401 (414)
T PRK10483 388 IVLILLFGVGNALV 401 (414)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555554433
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.95 E-value=2.4e-25 Score=213.89 Aligned_cols=376 Identities=14% Similarity=0.117 Sum_probs=264.7
Q ss_pred cCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccc
Q 036096 28 RNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEK 107 (440)
Q Consensus 28 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~ 107 (440)
||.+...+++.+.++++|+|+|++|.+.++.|+.++.++++++|....+|..++.|...+.++ ..++..++|+.+||
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~--g~~l~tma~~~LG~- 83 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV--GSSFNTITKDLIGN- 83 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHcCh-
Confidence 344778899999999999999999999999999999999999999999999999999876654 44899999999997
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHH
Q 036096 108 LGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSI 187 (440)
Q Consensus 108 ~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 187 (440)
.|+.+.++...+..++.+.+|+.-.++.+++.++...+ .+.++....+++.++.-++.+.. .+...+.+.+-+..++
T Consensus 84 ~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~--~~i~~~~~~llF~~~~~~~v~~g-t~~vd~~nr~l~~~~i 160 (415)
T PRK09664 84 TWNIISGITVAFVLYILTYAYISANGAIISETISMNLG--YHANPRIVGICTAIFVASVLWIS-SLAASRITSLFLGLKI 160 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc--CCCcHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHH
Confidence 57799999999999999999999999999999875221 12344444455666655555543 2333344433333222
Q ss_pred HHHHHHHHHHHhcCCCCCccccCCCCcc-ccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHHH
Q 036096 188 SYSVIAWVACLHKGALPNVDYGLRASKT-TGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAY 266 (440)
Q Consensus 188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~ 266 (440)
+..+..+.....+.+.+... +.+.... ...+..++.++|++++||+.|+++|++.+.++ +|++| .+|++..+.
T Consensus 161 i~f~~~~~~l~~~i~~~~L~-~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~--~~kaIl~Gs 234 (415)
T PRK09664 161 ISFVIVFGSFFFQVDYSILR-DATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDK--LIKSVVFGS 234 (415)
T ss_pred HHHHHHHHHHhhcccHHHHh-cCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHH--HHHHHHHHH
Confidence 22222122212111111110 0000000 01134588899999999999999999999983 45444 448999999
Q ss_pred HHHHHHHHhH--HhHH---------HhhcCCCchhH---HhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 036096 267 LLVAFCYFPV--AMVG---------YWAFGNQVEDN---VLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAF 332 (440)
Q Consensus 267 ~~~~~~y~~~--g~~g---------y~~fg~~~~~~---il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 332 (440)
.+..++|.+- .+.| ....|++.+.- ...+ .++.+...+.+++..+.+.+||--.....+|.+.|.
T Consensus 235 ~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~ 313 (415)
T PRK09664 235 LLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL 313 (415)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888553 2223 12233343331 1122 334577778889999999999999999999999998
Q ss_pred HhhhcCCCcchhhhhhhHHHHHHHHHHHHhhccc-hhHHHHHhhhhhhhhHHHHHHHHHHHHHhcC-CCCc----hhHHH
Q 036096 333 LVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPF-FGGLLSFFGGLAFAPTTYYIPCIIWLAIYKP-RRFS----LSWIT 406 (440)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~-~~~~----~~~~~ 406 (440)
++.++++ ..|.....+.++++++++...|+ |-..++++|.. .+.+.-++|+++-+|.||+ +... ..+..
T Consensus 314 ~~~~~~~----~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~ 388 (415)
T PRK09664 314 FKIDNSH----GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLI 388 (415)
T ss_pred hCCCCcc----ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHH
Confidence 8755321 23455556778899999999998 78899999986 5788899999999999876 2221 23455
Q ss_pred HHHHHHHHHHHHHHH
Q 036096 407 NWFCIIVGVALMILA 421 (440)
Q Consensus 407 ~~~~~~~g~~~~~~g 421 (440)
-++.+++|++..+.-
T Consensus 389 l~~~~~~g~~ii~~~ 403 (415)
T PRK09664 389 PAIVILFGITVILCW 403 (415)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666655443
No 12
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=9.7e-26 Score=221.08 Aligned_cols=345 Identities=17% Similarity=0.134 Sum_probs=257.1
Q ss_pred HHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccchhhHHHH
Q 036096 35 SAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIV 114 (440)
Q Consensus 35 ~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~ 114 (440)
++..++++++|+|++++|..+++.|..++++.+++.++++.++..++.|...+.|+.+ ++.+++++.+||+.| ++..
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~--~~~~~~~~~~G~~~g-~~~~ 78 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGA--SFNTIAKDLLGKTGN-IIAG 78 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhCHHHH-HHHH
Confidence 4567889999999999999999999889999999999999999999999988777543 899999999998555 9999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHH
Q 036096 115 PQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIAW 194 (440)
Q Consensus 115 ~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~ 194 (440)
+..++.++..+.+|....++.+..+++..... ..++....+++.+++.++. .++.+....++.+.+...+..+++.+
T Consensus 79 ~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 79 LSLLFVLYILTYAYISGGGSILSRLIGEYFGF--PWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754321 1233333333444444433 45677888888887776655444434
Q ss_pred HHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHHHHHHHHHHH
Q 036096 195 VACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYLLVAFCYF 274 (440)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~~~y~ 274 (440)
+....+.+.++..+. ...+.++.++..+++...++|.+|.+++++.+|+ +|+ +++++|+..++..+++++|+
T Consensus 156 i~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~~lY~ 227 (381)
T TIGR00837 156 SGLLPHVKGDLLLDV---ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIALVLYI 227 (381)
T ss_pred HHHHhhccHHHHhcC---ccccccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHHHHHH
Confidence 333333222221111 1112356788899999999999998999999998 656 44788999999999999999
Q ss_pred hHHhHHHhhcCCCch----------hH---HhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhhcCCCc
Q 036096 275 PVAMVGYWAFGNQVE----------DN---VLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKLHFKP 341 (440)
Q Consensus 275 ~~g~~gy~~fg~~~~----------~~---il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 341 (440)
+.........+.+.- ++ ...+.-.+.+...++..+..+.+.+++.-...+.+|...+.++++.++
T Consensus 228 l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~-- 305 (381)
T TIGR00837 228 LWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK-- 305 (381)
T ss_pred HHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--
Confidence 887666555443211 11 111111224566778888899999999999999999988887654221
Q ss_pred chhhhhhhHHHHHHHHHHHHhhccchh-HHHHHhhhhhhhhHHHHHHHHHHHHHhcCC
Q 036096 342 TMILRFLTRTIYVGFTMFIAMTFPFFG-GLLSFFGGLAFAPTTYYIPCIIWLAIYKPR 398 (440)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~ia~~~p~~~-~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~ 398 (440)
.+|.....+..+++.++|...|+.. ..++.+| +..+.+.+++|++++++.||++
T Consensus 306 --~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 306 --KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred --CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 1245556777788999999999866 8999999 8889999999999999987753
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.95 E-value=1.6e-24 Score=209.65 Aligned_cols=368 Identities=17% Similarity=0.182 Sum_probs=262.9
Q ss_pred chhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccchhh
Q 036096 31 KWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGL 110 (440)
Q Consensus 31 s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~ 110 (440)
+...+++.+.++++|+|+|+||.+.+..|.+++++++++++.+..|+.+.+.|...+.++ ..++.+++|+.+||+ |+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~--~~~~~~~a~~~LG~~-g~ 80 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA--DTGLGTLAKRYLGRY-GQ 80 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHhChH-HH
Confidence 678899999999999999999999999999999999999999999999999997654443 348999999999985 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHH
Q 036096 111 WIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYS 190 (440)
Q Consensus 111 ~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 190 (440)
++.++.+.+..+..+.+|..-.++.+.+.++.+.+. +.+.....+++.++.....+. +.+..-+.+.+-+...++..
T Consensus 81 ~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 81 WLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888764421 223344444444443333333 33444444444333222222
Q ss_pred HHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHHHHHHH
Q 036096 191 VIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYLLVA 270 (440)
Q Consensus 191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~ 270 (440)
+........+.+.++... . +.+...++.++|++++||+.|+++|++.+.++ +|++ +.+|++.++..+..
T Consensus 158 ~~~~~~l~p~~~~~~L~~----~--~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~---~~~~--~~~k~i~~Gs~i~l 226 (403)
T PRK15132 158 VVMLALMMPHIHKVNLLT----L--PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMG---GNIR--KLRWVFIIGSAIPL 226 (403)
T ss_pred HHHHHHHHHhcCHHHHhc----C--CccccHHHHHHHHHHHHhhCCcccHHHHHHhC---cCHH--HHHHHHHHHHHHHH
Confidence 222223232222222110 0 11112489999999999999999999999983 3333 46699999999999
Q ss_pred HHHHhHHhHHHhhcCCCc----------hhHHhhCC---CCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhhc
Q 036096 271 FCYFPVAMVGYWAFGNQV----------EDNVLMSL---EKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKL 337 (440)
Q Consensus 271 ~~y~~~g~~gy~~fg~~~----------~~~il~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 337 (440)
++|++.-.......+.+. .++.+..+ .+..+...+...+..+.+.+||--.....+|.+.+.++.+.
T Consensus 227 i~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~ 306 (403)
T PRK15132 227 VAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRN 306 (403)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 999887555554443221 11222222 23467777888999999999999999999999999886542
Q ss_pred CCCcchhhhhhhHHHHHHHHHHHHhhccc-hhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC---CCc--hhHHHHHHHH
Q 036096 338 HFKPTMILRFLTRTIYVGFTMFIAMTFPF-FGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPR---RFS--LSWITNWFCI 411 (440)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~---~~~--~~~~~~~~~~ 411 (440)
+ ...|.....+.++++.+++...|+ |....++.|.. .+.+.+++|+++.+|.||++ +.| ..+...++++
T Consensus 307 ~----~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~ 381 (403)
T PRK15132 307 T----VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVF 381 (403)
T ss_pred c----ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHH
Confidence 2 123556667888899999999997 67788888864 68999999999999988755 222 1455677777
Q ss_pred HHHHHHHHH
Q 036096 412 IVGVALMIL 420 (440)
Q Consensus 412 ~~g~~~~~~ 420 (440)
++|++..+.
T Consensus 382 ~~G~~~i~~ 390 (403)
T PRK15132 382 LCGIAVIGI 390 (403)
T ss_pred HHHHHHHHH
Confidence 777665544
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.93 E-value=2.3e-23 Score=200.23 Aligned_cols=383 Identities=14% Similarity=0.113 Sum_probs=266.5
Q ss_pred HHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccchhhHHHHH
Q 036096 36 AFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVP 115 (440)
Q Consensus 36 ~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~~ 115 (440)
...+.++.+|+|+|+||-.....|.+++++++++.+.+++++++.+.|.....++ +..++.+++++.+||++| .+.++
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-~~~~i~~v~~~~lG~~g~-~i~~i 102 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-PSGNITETVEEHFGKTGG-VVITF 102 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHcChhHH-HHHHH
Confidence 6999999999999999999999999999999999999999999999997654421 245999999999998766 89999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 036096 116 QQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIAWV 195 (440)
Q Consensus 116 ~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 195 (440)
.+.+..+..+.+|...+.+.+++++.+..+ ....++....+++.+++....... -+..-+++.+-+...+...+....
T Consensus 103 lYff~ly~ll~aY~~~itn~l~sfl~~ql~-~~~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv~~~i~~l~~l~~ 180 (443)
T PRK13629 103 LYFFAICPLLWIYGVTITNTFMTFWENQLG-FAPLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLVWPFIASLVLISL 180 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cCCccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888887665432 213355555555555544444443 344444444333333333333333
Q ss_pred HHHhcCCCCCccccC-CCCcc--c-cchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCC---CCC--CCCchhhhhHHH
Q 036096 196 ACLHKGALPNVDYGL-RASKT--T-GNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPE---KPS--KKPMWKGVVIAY 266 (440)
Q Consensus 196 ~~~~~~~~~~~~~~~-~~~~~--~-~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~---~p~--~~~~~~~~~~s~ 266 (440)
+.+-+.+.++..... +..+. . .....++.++|+.+|||..|+.+|++...+|+..+ +++ +++..|+..++.
T Consensus 181 ~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs 260 (443)
T PRK13629 181 SLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRAS 260 (443)
T ss_pred HHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 434333333221100 00000 1 11245889999999999999999999999644322 233 456779999999
Q ss_pred HHHHHHHHhHHhHHHhhcCCCch-----h--HH----hhCCCC---c-----hHHHHHHHHHHHHHHHHhhccccccHHH
Q 036096 267 LLVAFCYFPVAMVGYWAFGNQVE-----D--NV----LMSLEK---P-----RWLIAAANLFVVVHVIGSYQVYAMPVFD 327 (440)
Q Consensus 267 ~~~~~~y~~~g~~gy~~fg~~~~-----~--~i----l~~~~~---~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 327 (440)
.+..++|+..-+......+++.- + ++ .+.+++ . .+...+..++..+.+.++|.-.....+|
T Consensus 261 ~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E 340 (443)
T PRK13629 261 MLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLE 340 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887776666553221 1 21 122222 1 4466678888888999999999999999
Q ss_pred HHHHHHhh---hc--CCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCch
Q 036096 328 MLEAFLVK---KL--HFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSL 402 (440)
Q Consensus 328 ~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~~~~~ 402 (440)
.++....+ +. ++...+..+.....++++.+..++...|++-.+++-.|+-..+++.|++|...-+|...-++.|.
T Consensus 341 ~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~ 420 (443)
T PRK13629 341 GLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRG 420 (443)
T ss_pred HHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhCC
Confidence 99888842 11 11234455666777888899999999999999999777777789999999888877643333321
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 036096 403 SWITNWFCIIVGVALMILAPI 423 (440)
Q Consensus 403 ~~~~~~~~~~~g~~~~~~g~~ 423 (440)
+..++++.+.|++....-.|
T Consensus 421 -~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 421 -RLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred -CchhHHHHHHHHHHHHHHHH
Confidence 23478888888876544444
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.91 E-value=6e-22 Score=192.31 Aligned_cols=374 Identities=12% Similarity=0.097 Sum_probs=258.8
Q ss_pred hHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccchhhHHH
Q 036096 34 YSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWII 113 (440)
Q Consensus 34 ~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~ 113 (440)
.-.+.+.++++|+|+|++|...++.||++.++..++...+.+++...+.|.....+. +..++.|++++.|||++| .+.
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G-~ii 84 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWG-ILI 84 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHH-HHH
Confidence 348899999999999999999999999988888888888889999999997443322 134899999999998777 889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHH
Q 036096 114 VPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIA 193 (440)
Q Consensus 114 ~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~ 193 (440)
.+.+++..+..+.+|.....+.+++++.+..+... +.+....+..++++-.....+.+....++.+-+...+..++..
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~--p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l 162 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAP--PLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLL 162 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888876442111 1222222222333233334467777777777765444444444
Q ss_pred HHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCC--CCCchhhhhHHHHHHHH
Q 036096 194 WVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPS--KKPMWKGVVIAYLLVAF 271 (440)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~--~~~~~~~~~~s~~~~~~ 271 (440)
......+.+.++.... +.....+.++..+++..++||.+|+.+|++..+.|+..+||+ +++..|+..++..+..+
T Consensus 163 ~~~lip~~~~~~L~~~---p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~ 239 (397)
T TIGR00814 163 SLYLIPHWNGANLTTF---PSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVA 239 (397)
T ss_pred HHHHHHHcCHHHHhcC---CcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHH
Confidence 4444433332222111 111224678999999999999999999999833321114333 44566999999999999
Q ss_pred HHHhHHhHHHhhcCCCchh-------HHhh---CCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhhc----
Q 036096 272 CYFPVAMVGYWAFGNQVED-------NVLM---SLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKL---- 337 (440)
Q Consensus 272 ~y~~~g~~gy~~fg~~~~~-------~il~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---- 337 (440)
+|+..-+......+++.-. +.+. +..++.+...+...+..+.+.+++.-.....+|.+.+.+.+..
T Consensus 240 ~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~ 319 (397)
T TIGR00814 240 TVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKG 319 (397)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence 9998877777666543211 1122 1123356667778888889999999999999999999883211
Q ss_pred CCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 036096 338 HFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNWFCIIVGV 415 (440)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 415 (440)
++.+++..+.....++++.+..++...|++-.+++-.|+-..+++.|++|...-+|...-++.|. +..++++.+.|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~-~~~~~fv~~~g~ 396 (397)
T TIGR00814 320 KKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYRG-RISNVFVTVIGL 396 (397)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhCC-CcchheeEeeec
Confidence 12233444556666777889999999999999999777777789999999888777643322221 134555555443
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.84 E-value=2.9e-17 Score=164.12 Aligned_cols=354 Identities=10% Similarity=0.031 Sum_probs=204.1
Q ss_pred cccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhc
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFG 105 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 105 (440)
++|+.+.++.+...+++++|+|++.+|..+++.|- .+++.+++.+++.......+.|...+.|.++ ....+.++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G--G~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG--GMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--chHHHHHHHcC
Confidence 46789999999999999999999999988888775 4677788888888888888899776666654 66788999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHH-HHHHHHhcCCCcchhhHHHHHHHH
Q 036096 106 EKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFA-SVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 106 ~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
|+.| ++..+..++.......++.....+++..+++.. .+ +...+..... +.++-....++.+....++.+...
T Consensus 81 ~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~---~~--~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~ 154 (438)
T PRK10655 81 KSGN-FMANYTYGVSLLIANVAIAISAVGYGTELFGAT---LS--PVQICLATIGVLWLCTVANFGGARITGQISSVTVW 154 (438)
T ss_pred cchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cc--hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 9888 777777766666555555444555555554321 11 1111211111 122222334566666666665554
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhH
Q 036096 185 MSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVI 264 (440)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~ 264 (440)
..+..++++.+........++.++.++. .....+.++..++....|+|.|.+.+....+|+ |||+| +++|++..
T Consensus 155 ~~l~~l~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi~~ 228 (438)
T PRK10655 155 GVIIPVVGLSIIGWFWFSPSLYVAAWNP-HHLPFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVPIAVLG 228 (438)
T ss_pred HHHHHHHHHHHHHHHHhCcccccCCcCc-cCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-cccHHHHH
Confidence 4333232222222222222222221111 111124567788889999999999999999999 99987 79999999
Q ss_pred HHHHHHHHHHhHHhHHHhhcCCC----chhH---HhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhh--
Q 036096 265 AYLLVAFCYFPVAMVGYWAFGNQ----VEDN---VLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVK-- 335 (440)
Q Consensus 265 s~~~~~~~y~~~g~~gy~~fg~~----~~~~---il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-- 335 (440)
+..++.++|++.........+++ .+++ .....- .++...+......++.+.+.........+.....-++
T Consensus 229 ~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~-g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~ 307 (438)
T PRK10655 229 GTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMF-NPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGY 307 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999998765543322211 0111 111111 1222334444444454444433333333332222111
Q ss_pred ------hcCCCcchhhhhhhHHHHHHHHHHHHhhcc----chhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC
Q 036096 336 ------KLHFKPTMILRFLTRTIYVGFTMFIAMTFP----FFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPR 398 (440)
Q Consensus 336 ------~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p----~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~ 398 (440)
+.|+ .+.+.+.+.....+...+.+....| .++.+.++. .....+.|.++++.+++.+|++
T Consensus 308 lP~~~~~v~~-~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~--~~~~~i~y~~~~~~~~~lr~~~ 377 (438)
T PRK10655 308 FPKIFSRVTK-VDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLA--VVTNIIPYILSMAALVIIQKVA 377 (438)
T ss_pred hhHHHHhhCc-CCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhC
Confidence 1122 2334443333332222222222223 344555543 3345688899988888776654
No 17
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.84 E-value=4.1e-18 Score=164.27 Aligned_cols=359 Identities=16% Similarity=0.196 Sum_probs=239.7
Q ss_pred cccccCCchhhHHHHHhhhhhcchhcchHHH-HhhhC-chHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHH
Q 036096 24 ITKSRNAKWWYSAFHNVTAMVGAGVLGLPYA-MSEIG-WGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQ 101 (440)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G-~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 101 (440)
...+|+.+.+.++..++++++|+|++..|.. .+++| ...+++..++.++++...+...+|.....|+++ .+..+..
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksG--gd~ayi~ 85 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSG--GDYAYIS 85 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC--cchhhHH
Confidence 3457899999999999999999999999987 45555 445666788999999999999999776555443 3445577
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhh-hHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcC--CCcchhhHH
Q 036096 102 HAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQC-LKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHL--PSFNSVAVV 178 (440)
Q Consensus 102 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~l~~l~~~ 178 (440)
++||+.++....++......-..+..+.+..+++ ++++++. |. .++.....+..+++..+.++ .+.+.-.++
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~----c~-~p~~~~~lla~~~l~~lt~~n~~~V~~a~~v 160 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL----CD-VPRVASKLLAAALLVLLTLINSFSVKWATRV 160 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC----CC-CchHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 8899988844444444444444557777778877 5555541 22 23333333444333333333 356666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCC
Q 036096 179 SLAAAVMSISYSVIAWVACLHK---GALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSK 255 (440)
Q Consensus 179 s~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~ 255 (440)
+.+...+.+..+.++++..++. +..++.+... ......+..++..++-...|+|.|+..+-.+.+|+ |||+|
T Consensus 161 q~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEi----knP~k 235 (479)
T KOG1287|consen 161 QIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI----KNPRR 235 (479)
T ss_pred HHHHHHHHHHHHHHHHHhchheeEecccccccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchHhh----cCccc
Confidence 7777776666555555544432 2233322221 22334466789999999999999999999999999 99988
Q ss_pred CCchhhhhHHHHHHHHHHHhHHhHHHhhcCCCchhHHhhC------CC---CchHHHHHHHHHHHHHHHHhhccccccHH
Q 036096 256 KPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMS------LE---KPRWLIAAANLFVVVHVIGSYQVYAMPVF 326 (440)
Q Consensus 256 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~------~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 326 (440)
++||++.+++.+++++|+++-+..+.+... ++++.+ +. -.++. .+..+++.++.+.+.-..++...
T Consensus 236 -tLP~Ai~isi~lvt~iYil~NvAy~~vls~---~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~S 310 (479)
T KOG1287|consen 236 -TLPRAILISIPLVTVIYVLVNVAYFTVLSP---DEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSS 310 (479)
T ss_pred -cchHHHHHhhHHHHHHHHHhHhheeEecCH---HHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHH
Confidence 899999999999999999998877655432 222111 11 12344 56777788888888877777766
Q ss_pred HHHHHHHhhhc--------CCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC
Q 036096 327 DMLEAFLVKKL--------HFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPR 398 (440)
Q Consensus 327 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~ 398 (440)
+.+....++.. |.++.+++..+.-. ....++.....|+..+++..+-.......+.+-+++++|.+|++
T Consensus 311 R~~~~~areG~LP~~~s~i~~~~~TP~~allf~---~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 311 RLFYAGAREGHLPAFFSMISVRRFTPRPALLFS---GLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHccCccHHHHhhcCCCCCChHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 66555544332 21221222222222 22223333356899999999988888888889999999999888
Q ss_pred CCch
Q 036096 399 RFSL 402 (440)
Q Consensus 399 ~~~~ 402 (440)
..|+
T Consensus 388 ~~rP 391 (479)
T KOG1287|consen 388 LPRP 391 (479)
T ss_pred CCCC
Confidence 7664
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.83 E-value=2.7e-17 Score=163.92 Aligned_cols=244 Identities=13% Similarity=0.083 Sum_probs=162.5
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHh
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAF 104 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 104 (440)
+++|+.+.++.+...+++++|+|++.+|...++.|-. .+...++.++........+.|...+.|..+ ...+.+++ +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G--G~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG--GPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHH-H
Confidence 3578899999999999999999999999998887742 555677777788888888899887788755 66677888 8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHH-HHHHHHHHHhcCCCcchhhHHHHHHH
Q 036096 105 GEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIM-IFASVHFVLSHLPSFNSVAVVSLAAA 183 (440)
Q Consensus 105 G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (440)
||++| +.+.+..+........++.+...+++..+++... +.. ..+.. +..+.++-+...++.+....++.+..
T Consensus 78 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~---~~~--~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~ 151 (435)
T PRK10435 78 SPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN---DPI--PAGIACIAIVWVFTFVNMLGGTWVSRLTTIGL 151 (435)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC---ChH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99888 7777776665555555565656666665554321 111 11111 11111222233455666666665555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhh
Q 036096 184 VMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVV 263 (440)
Q Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 263 (440)
++.+..++...+....+.++++...+++ ...+.++.++..++....|+|.|.+.+....+|+ |||+| +++|++.
T Consensus 152 ~~~li~~~~~~i~g~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~iPrAi~ 225 (435)
T PRK10435 152 VLVLIPVVGTAIVGWHWFDAATYAANWN-TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR-TVPLATM 225 (435)
T ss_pred HHHHHHHHHHHHHHHHHcCHHhhccccc-CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-cccHHHH
Confidence 4433222222222222212111111211 1123456789999999999999999999999999 99987 7999999
Q ss_pred HHHHHHHHHHHhHHhHHHhhc
Q 036096 264 IAYLLVAFCYFPVAMVGYWAF 284 (440)
Q Consensus 264 ~s~~~~~~~y~~~g~~gy~~f 284 (440)
.+...+.++|++..+......
T Consensus 226 ~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 226 LGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999877655443
No 19
>PRK15049 L-asparagine permease; Provisional
Probab=99.82 E-value=8.3e-17 Score=162.58 Aligned_cols=353 Identities=11% Similarity=0.095 Sum_probs=205.4
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHH-HHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPY-AMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHA 103 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 103 (440)
+.+|+.+.++..+..+++++|+|++..|. +.+.+|- .+++..++.+++....+..+.|.....|..+ +....+++.
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG--g~y~y~~~~ 101 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG--SFVSYAREF 101 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Confidence 36788999999999999999999999886 5667774 4666778888888889999999888788755 788899999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAA 183 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (440)
+||++| +++.+..++........-....+.+...+ +.+ +..+.+.+.++..++ +-....+..+....++....
T Consensus 102 ~G~~~g-f~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~----~~~~~~~~~~~~~~l-~~~iN~~gvk~~~~i~~~~~ 174 (499)
T PRK15049 102 LGEKAA-YVAGWMYFINWAMTGIVDITAVALYMHYW-GAF----GGVPQWVFALAALTI-VGTMNMIGVKWFAEMEFWFA 174 (499)
T ss_pred hCcHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC----CCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999888 77777777654433333333333332211 110 112222222222222 22233345555555555544
Q ss_pred HHHHHHHHHHHHHH---HhcCCCCCc-cccC-----CCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCC
Q 036096 184 VMSISYSVIAWVAC---LHKGALPNV-DYGL-----RASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPS 254 (440)
Q Consensus 184 ~~~~~~~~i~~~~~---~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~ 254 (440)
++.+..++..++.. ...+...+. .... +....++++..+..++...+|+|.|.+.+....+|. |||+
T Consensus 175 ~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----knP~ 250 (499)
T PRK15049 175 LIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC----KDPQ 250 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cChh
Confidence 33332222211111 111211100 0000 011123345556677788999999999999999999 9998
Q ss_pred CCCchhhhhHHHHHHHHHHHhHHhHHHhhcCCC----chhHH---hhCCCCchHHHHHHHHHHHHHHHHhhccccccHHH
Q 036096 255 KKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQ----VEDNV---LMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFD 327 (440)
Q Consensus 255 ~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~----~~~~i---l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 327 (440)
| +++|++..+...+.++|+..........+.+ ..++. ..... .++...+..++..++.+.+..-..+...+
T Consensus 251 r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR 328 (499)
T PRK15049 251 T-MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGR 328 (499)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 8999999999999999988766544333321 11222 22222 13344555666666666666555555555
Q ss_pred HHHHHHhhh--------cCCCcchhhhhh-hHHHHHHHHHHHHhhccc--hhHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 036096 328 MLEAFLVKK--------LHFKPTMILRFL-TRTIYVGFTMFIAMTFPF--FGGLLSFFGGLAFAPTTYYIPCIIWLAIYK 396 (440)
Q Consensus 328 ~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~ia~~~p~--~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~ 396 (440)
.....-+++ .+ +.+.+.+.+ +..++..+..++....|+ ++.++++ +..+..+.|++|++.+++.||
T Consensus 329 ~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~--~~~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 329 ILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNF--ASLGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred HHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 544433321 12 223333333 333332222223323332 4444554 345567899999999888765
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.82 E-value=1.2e-16 Score=159.78 Aligned_cols=242 Identities=17% Similarity=0.132 Sum_probs=159.7
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHh
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAF 104 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 104 (440)
+++|+.+.++.++..+++++|+|++.+|....+.|. ..+...++.++........+.|.....|..+ ...+.+++.+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aG--G~y~~~~~~~ 81 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPG--GSYAYARRCF 81 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHHHc
Confidence 457889999999999999999999999988877763 3455566667777777888888877777654 5667799999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHH--HHHHhcCCCcchhhHHHHHH
Q 036096 105 GEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASV--HFVLSHLPSFNSVAVVSLAA 182 (440)
Q Consensus 105 G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~~pl~~~~~l~~l~~~s~~~ 182 (440)
||+.| +.+.+..++.......+......++...+.+.. . ++....++..++ .+-....+..|....++.+.
T Consensus 82 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~ 154 (445)
T PRK10644 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL----K--DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_pred CchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----C--CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 99888 777777776554444444444445544443321 0 111111221212 22233345677777777766
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhh
Q 036096 183 AVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGV 262 (440)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~ 262 (440)
....+..+++..+........++....++ .....++.++..++....|+|.|.+......+|+ |||+| +.+|++
T Consensus 155 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iPrai 228 (445)
T PRK10644 155 TVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIAT 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhccCCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCccc-chhHHH
Confidence 65544333322222222111111111111 1112345567788889999999999999999999 99987 799999
Q ss_pred hHHHHHHHHHHHhHHhHHHh
Q 036096 263 VIAYLLVAFCYFPVAMVGYW 282 (440)
Q Consensus 263 ~~s~~~~~~~y~~~g~~gy~ 282 (440)
..+..++.++|.+..+....
T Consensus 229 ~~s~~i~~v~Y~l~~~~~~~ 248 (445)
T PRK10644 229 IGGVLIAAVCYVLSSTAIMG 248 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998776443
No 21
>PRK10249 phenylalanine transporter; Provisional
Probab=99.80 E-value=5.4e-16 Score=155.45 Aligned_cols=351 Identities=15% Similarity=0.122 Sum_probs=207.9
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHHH-HhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPYA-MSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHA 103 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 103 (440)
+.+|+.+.++..+..+++++|+|++..|.. .+++|- ..++..++.+++.......+.|...+.|..+ +..+++++.
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G--g~~~y~~~~ 94 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG--SFAHFAYKY 94 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Confidence 457889999999999999999999998865 556664 4666788889999999999999888777755 778899999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAA 183 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (440)
+||++| +++.+..++.......+.....+.+++.+.+. .+...+.++... ++-....++.+..+.++....
T Consensus 95 ~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~-l~~~lN~~gv~~~~~i~~~~~ 165 (458)
T PRK10249 95 WGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD-------VPTWIWAAAFFI-IINAVNLVNVRLYGETEFWFA 165 (458)
T ss_pred hChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------CcHHHHHHHHHH-HHHHHHHhcchhhhhHHHHHH
Confidence 999888 77777777766555555555555555444321 122222222222 222333456666665555444
Q ss_pred HHHHHHHHHHHH---HHHhcCCC-C--CccccCCC-CccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCC
Q 036096 184 VMSISYSVIAWV---ACLHKGAL-P--NVDYGLRA-SKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKK 256 (440)
Q Consensus 184 ~~~~~~~~i~~~---~~~~~~~~-~--~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~ 256 (440)
...+..+++.++ .....+.. + +.+..++. ...++++.++..++....|+|.|.+.+....+|+ |||+|
T Consensus 166 ~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~k- 240 (458)
T PRK10249 166 LIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPEK- 240 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHhh-
Confidence 333221111111 11111111 1 11111111 1123567788999999999999999999999999 99988
Q ss_pred CchhhhhHHHHHHHHHHHhHHhHHHhhcCCCc----hhHH---hhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHH
Q 036096 257 PMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQV----EDNV---LMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDML 329 (440)
Q Consensus 257 ~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~----~~~i---l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 329 (440)
+++|++..+.....++|.+.........+++. +++. ..... .++...+...+..+..+.+..-..+...+..
T Consensus 241 ~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l 319 (458)
T PRK10249 241 SIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLD-SNVVASALNFVILVASLSVYNSGVYSNSRML 319 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999876554433332211 1111 12222 1334444455555555555544444444443
Q ss_pred HHHHhhh--------cCCCcchhhhhh-hHHHHHHHHHHHHhhccc--hhHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 036096 330 EAFLVKK--------LHFKPTMILRFL-TRTIYVGFTMFIAMTFPF--FGGLLSFFGGLAFAPTTYYIPCIIWLAIYK 396 (440)
Q Consensus 330 ~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~ia~~~p~--~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~ 396 (440)
...-+++ .++ .+.+.+.+ +...+..+..++....|+ ++.+.++. .....+.|++|++.+++.+|
T Consensus 320 ~a~ardg~lP~~~~kv~~-~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~--~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 320 FGLSVQGNAPKFLTRVSR-RGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALV--VATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHhcCCCcCHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3332221 122 22333333 333333333333223332 34444442 33467899999999988764
No 22
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.80 E-value=9.4e-16 Score=154.50 Aligned_cols=357 Identities=13% Similarity=0.107 Sum_probs=208.3
Q ss_pred cccCCchhhHHHHHhhhhhcchhcchHHHHhhhCch-HHHHHHHHHHHHHHHHHHHHHHhhhccCC-cccccHHHHHHHH
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWG-PGIAVIVLSWIITLYTLWQMVEMHEMVPG-KRFDRYYELGQHA 103 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-~g~i~l~~~~~~~~~s~~~l~~~~~~~~~-~~~~~y~~~~~~~ 103 (440)
++|+.|.+++++..+++++|+|++.+|....+.|-. ..++..++.+++.......+.|...+.|+ .+ ...++.++.
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG--G~y~y~~~~ 82 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG--GIYAYAREG 82 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhH
Confidence 468899999999999999999999999987655533 23455777788888888888998877776 44 566778999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHH-HHHHHHHHHhcCCCcchhhHHHHHH
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIM-IFASVHFVLSHLPSFNSVAVVSLAA 182 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~ 182 (440)
+||+.| +...+..++.......++.....+++..+++... ... +...+.. +..++..-....++.+..+.++.+.
T Consensus 83 ~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-~~~--~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~ 158 (473)
T TIGR00905 83 FGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-SGN--PVPSILGASVLLWVFTFLVLRGVRQAAFINTIT 158 (473)
T ss_pred cccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCC--cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999888 7777777666555566666666666666665321 001 1111211 1112223334456778777777777
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccC--CCC-ccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCch
Q 036096 183 AVMSISYSVIAWVACLHKGALPNVDYGL--RAS-KTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMW 259 (440)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~ 259 (440)
....+..+++.++........++...+. +.. ....++..+..++....|+|.|.+......+|+ || +| +.+
T Consensus 159 ~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~-~r-~iP 232 (473)
T TIGR00905 159 TIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRA----KN-KS-DVG 232 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hc-cc-cch
Confidence 7654443333232222111111111111 101 112245678888999999999999999999999 88 44 789
Q ss_pred hhhhHHHHHHHHHHHhHHhHHHhhcCCC----chhH----HhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Q 036096 260 KGVVIAYLLVAFCYFPVAMVGYWAFGNQ----VEDN----VLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEA 331 (440)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~gy~~fg~~----~~~~----il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 331 (440)
|++..+..++.++|.+.........+.+ .+++ +..... .++...+..++..++.+.+.........+....
T Consensus 233 rai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~a 311 (473)
T TIGR00905 233 KATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIV-GKWGAVLISLGLIISVLGSLLSWTMLAAEVPFS 311 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876644333211 1111 111111 123333444444555554444444443333333
Q ss_pred HHhh--------hcCCCcchhhhhhhHHHHHHHHHHHHhh--ccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC
Q 036096 332 FLVK--------KLHFKPTMILRFLTRTIYVGFTMFIAMT--FPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPR 398 (440)
Q Consensus 332 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ia~~--~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~ 398 (440)
.-++ +.|++ +.+.+.+.-...+.....+... ..+++.+.++.+ ....+.|.++++..++.++++
T Consensus 312 mardg~lP~~~~~v~~~-~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~--~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 312 AAKDGLFPKIFGRVNKN-GAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAV--VMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHhCCChhHHHHhhCcc-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcC
Confidence 3222 11222 3344443333332222222222 234555555533 345688888888888876554
No 23
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.79 E-value=6.4e-16 Score=155.65 Aligned_cols=354 Identities=11% Similarity=0.090 Sum_probs=198.8
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHHH-HhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPYA-MSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHA 103 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 103 (440)
+.+|+.+.++..+..+++++|+|++..|.. .+.+|-...++..++.+++.......+.|...+.|.++ ++....++.
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG--G~y~y~~~~ 88 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG--AFHVYAARY 88 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHh
Confidence 357899999999999999999999988865 56777433456678888888889999999887777755 677899999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAA 183 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (440)
+||++| +.+.+..++.....+.......+..++.+.+ ..+...+.++..++ +-+...++.+.....+....
T Consensus 89 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~-~~~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 89 LGPATG-YTVAWLYWLTWTVALGSSLTAAGFCMQYWFP-------QVPVWPWCLLFCAL-IFGLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred cChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------cCcHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHH
Confidence 999888 7777777766555544434444433332221 11222222222222 22333445555555554444
Q ss_pred HHHHHHHHHHHHHHH--hcC--C--CCCcccc---CCCCcc-ccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCC
Q 036096 184 VMSISYSVIAWVACL--HKG--A--LPNVDYG---LRASKT-TGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKP 253 (440)
Q Consensus 184 ~~~~~~~~i~~~~~~--~~~--~--~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p 253 (440)
.+.+..++..++..+ ..+ . ..+..+. +..... +++..++..++....|+|.|.+.+....+|+ |||
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP 235 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET----ENP 235 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCh
Confidence 333322221111111 101 0 0000011 111111 2234567888888999999999999999999 999
Q ss_pred CCCCchhhhhHHHHHHHHHHHhHHhHHHhhcCCC-c---hh---HHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHH
Q 036096 254 SKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQ-V---ED---NVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVF 326 (440)
Q Consensus 254 ~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~-~---~~---~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 326 (440)
+| +++|++..+...+.++|++..+......+.+ . ++ ....... .++...+..++..++.+.+.--.++...
T Consensus 236 ~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g-~~~~~~ii~~~~~~s~~~~~~~~~~~~s 313 (471)
T PRK11387 236 AK-VIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVG-IPYAADIFNFVILTAILSAANSGLYASG 313 (471)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 87 8999999999999999998876544333321 1 11 1222222 1344445555555555555444444444
Q ss_pred HHHHHHHhhh--------cCCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhh--hhhhhHHHHHHHHHHHHHhc
Q 036096 327 DMLEAFLVKK--------LHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGG--LAFAPTTYYIPCIIWLAIYK 396 (440)
Q Consensus 327 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~--~~~~~l~~ilP~l~~~~~~~ 396 (440)
+.....-+++ .|+ .+.+.+.+....++....++....+. +..+....+ .....+.|+++++.+++.++
T Consensus 314 R~l~a~ardg~lP~~f~~~~~-~~~P~~Ail~~~~~~~l~~~~~~~~~-~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~ 391 (471)
T PRK11387 314 RMLWSLSNEGTLPACFARLTK-RGIPLTALSVSMLGGLLALFSSVVAP-DTVFVALSAISGFAVVAVWLSICASHFMFRR 391 (471)
T ss_pred HHHHHHHhcCCcCHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433332221 122 22333333222222221222222221 222222222 22345778888888777655
Q ss_pred C
Q 036096 397 P 397 (440)
Q Consensus 397 ~ 397 (440)
+
T Consensus 392 ~ 392 (471)
T PRK11387 392 R 392 (471)
T ss_pred H
Confidence 3
No 24
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.78 E-value=1.6e-15 Score=152.60 Aligned_cols=356 Identities=13% Similarity=0.089 Sum_probs=209.0
Q ss_pred cCCchhhHHHHHhhhhhcchhcchHHHH-hhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhcc
Q 036096 28 RNAKWWYSAFHNVTAMVGAGVLGLPYAM-SEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGE 106 (440)
Q Consensus 28 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~-~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~ 106 (440)
|+.+.++.+...+++++|+|++.+|... +.+|....++..++.++........+.|...+.|+.+ -...+.+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~g-GG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELD-GGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CChhhhHHhHcCc
Confidence 5789999999999999999999999874 4555333455577888888888888899887777521 0455669999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHH-HHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 036096 107 KLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIM-IFASVHFVLSHLPSFNSVAVVSLAAAVM 185 (440)
Q Consensus 107 ~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (440)
+.| ++..+..++.......++.....+++..+++.... ..+...+.. +..+..+-....+..+..+.++.+..+.
T Consensus 80 ~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ 155 (468)
T TIGR03810 80 FMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG---GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIA 155 (468)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC---CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 888 77888877766655666666666666555543211 111111111 1112223333346777777777776665
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccc-CCC----CccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchh
Q 036096 186 SISYSVIAWVACLHKGALPNVDYG-LRA----SKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWK 260 (440)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~ 260 (440)
.+..+++.++........++...+ +.. ....+.+.++..++....|+|.|.+......+|. || |++++|
T Consensus 156 ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~--~k~ip~ 229 (468)
T TIGR03810 156 KLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARA----EK--RSDVGK 229 (468)
T ss_pred HHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhc----cC--cccchH
Confidence 443333222222111111111110 000 0112234567788899999999999999999998 65 347889
Q ss_pred hhhHHHHHHHHHHHhHHhHHHhhcCCC----chh----HHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 036096 261 GVVIAYLLVAFCYFPVAMVGYWAFGNQ----VED----NVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAF 332 (440)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy~~fg~~----~~~----~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 332 (440)
++..+...+.++|.+..+..+...+++ .++ ....... .++...+...+..++.+.+.........|.....
T Consensus 230 ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ 308 (468)
T TIGR03810 230 ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLM 308 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887765444321 111 1222221 2345556666677777776666555554444333
Q ss_pred Hhh--------hcCCCcchhhhhhhHH-HHHHHHHHHHhh-ccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC
Q 036096 333 LVK--------KLHFKPTMILRFLTRT-IYVGFTMFIAMT-FPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPR 398 (440)
Q Consensus 333 ~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~ia~~-~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~ 398 (440)
-++ +.|+ +..+.+.+... .+..+..++... .+.++.+.++.+ ....+.|+++++.+++.++++
T Consensus 309 ardg~lP~~f~k~~~-~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 309 AKDKLMPKYFGKENA-NGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLAT--SAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HhCCCccHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 222 1122 23334433322 222221111111 233555555533 345788999999888886543
No 25
>TIGR00909 2A0306 amino acid transporter.
Probab=99.78 E-value=6.6e-16 Score=154.08 Aligned_cols=350 Identities=15% Similarity=0.075 Sum_probs=216.0
Q ss_pred ccCCchhhHHHHHhhhhhcchhcchHHHHh-hhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhc
Q 036096 27 SRNAKWWYSAFHNVTAMVGAGVLGLPYAMS-EIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFG 105 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~-~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 105 (440)
+|+.+.++.++..+++++|+|++.+|.... ..|. ..++..++.+++.......+.|...+.|+.+ +..+..++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAG--SPYTYAYEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--cceeeHHHHhC
Confidence 578999999999999999999999997644 4443 4555667778888888888899877777644 55677889999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCC-c-----cchh--hHHHHHHHHHHHhcCCCcchhhH
Q 036096 106 EKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKD-I-----RLTY--FIMIFASVHFVLSHLPSFNSVAV 177 (440)
Q Consensus 106 ~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~-~-----~~~~--~~~i~~~i~~pl~~~~~l~~l~~ 177 (440)
|+.| ++..+..++.....+..+....++++..+++....+.+. . +... +..+..+++.-+...++.+....
T Consensus 79 ~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 79 ELTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 9888 777777777777777777777788877776532101010 0 0001 11122233333344567888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCC
Q 036096 178 VSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKP 257 (440)
Q Consensus 178 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~ 257 (440)
++.+...+.+..+++.++....+...++.++ ..+.++.++..++....|+|.|.+.+....+|+ |||+| +
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r-~ 227 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASNNYTP-----FMPMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPER-D 227 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHHhcCC-----CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc-c
Confidence 8888777655444333333333222221111 123356678899999999999999999999999 89976 7
Q ss_pred chhhhhHHHHHHHHHHHhHHhHHHhhcCCC----chh---HHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHH
Q 036096 258 MWKGVVIAYLLVAFCYFPVAMVGYWAFGNQ----VED---NVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLE 330 (440)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~----~~~---~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 330 (440)
.+|++..+..++.++|.+.........+.+ .++ .+..... .++...+..+...++.+.+.........+...
T Consensus 228 ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~ 306 (429)
T TIGR00909 228 IPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLF 306 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999876654332211 111 1222222 24445556666677777666665555555554
Q ss_pred HHHhhhc--------CCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 036096 331 AFLVKKL--------HFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYK 396 (440)
Q Consensus 331 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~ 396 (440)
...+++. |.+.+.+.+...-... ++.++. ...+++.+.++.+ ....+.|++.++..++.+|
T Consensus 307 ~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~--i~~~~~-~~~~~~~l~~~~~--~~~~~~y~~~~~a~~~lr~ 375 (429)
T TIGR00909 307 AMSRDGLLPGSLSKVHPKTGTPHMSIIIFSL--TAALLA-SLVPLEGLAELTS--IGTLIAFAAVNVAVIILRR 375 (429)
T ss_pred HHHcCCCCcHHHHHcCCCCCCcHHHHHHHHH--HHHHHH-HHcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 4433221 2122233332222222 112222 2345677766543 2345667777666666554
No 26
>PRK11021 putative transporter; Provisional
Probab=99.78 E-value=4.6e-15 Score=146.97 Aligned_cols=344 Identities=13% Similarity=0.159 Sum_probs=197.6
Q ss_pred CchhhHHHHHhhhhhcchhcchHHH-HhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccch
Q 036096 30 AKWWYSAFHNVTAMVGAGVLGLPYA-MSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKL 108 (440)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~ 108 (440)
.++++++...+++|+|+|++.+|.. .+.+| ..+++..++.+++.......+.|...+.|+.+ +.....++.+||++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG-~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG--G~y~y~~~~~G~~~ 77 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAG-NNSLWAWPLLILLIFPIAIVFARLGRHFPHAG--GPAHFVGMAFGPRL 77 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHhHHHHhCchh
Confidence 3678999999999999999999976 55556 35677788888888889999999888788765 77788999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHH
Q 036096 109 GLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSIS 188 (440)
Q Consensus 109 g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~ 188 (440)
| +...+..+........+.......+...+++. +... .....+...+.+-+...++.+..+.++.+..+..+.
T Consensus 78 g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~ 150 (410)
T PRK11021 78 G-RVTGWLFLSVIPVGLPAALQIAAGFGQALFGW-----SSWQ-LLLAELLTLALLWLLNLRGASSSANLQTVIALLIVA 150 (410)
T ss_pred H-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-----CCch-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 8 66666665533333333333333444433321 1111 111112222223333455666666666654432221
Q ss_pred HHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHHHHH
Q 036096 189 YSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYLL 268 (440)
Q Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~ 268 (440)
.+ ... ...+..+..+..++ ...+.++.++..++....|+|.|.+.+....+|+ |||+| +++|++..+..+
T Consensus 151 i~--~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~~~~~ 220 (410)
T PRK11021 151 LV--VAI--WWAGDIKPADIPFP-APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRALMIGLLL 220 (410)
T ss_pred HH--HHH--HHHcCCchhcCCCC-CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHHHHHH
Confidence 11 111 11121111111111 1123467789999999999999999999999999 99987 799999999999
Q ss_pred HHHHHHhHHhHHH--hhcCCCch--h---HHhhC-CCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhh-----
Q 036096 269 VAFCYFPVAMVGY--WAFGNQVE--D---NVLMS-LEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVK----- 335 (440)
Q Consensus 269 ~~~~y~~~g~~gy--~~fg~~~~--~---~il~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----- 335 (440)
+.++|.+..+.-. ...++... + .+... +++ +...+..+...++.+.+.........+.....-++
T Consensus 221 ~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~--~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~ 298 (410)
T PRK11021 221 AGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGG--YALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPS 298 (410)
T ss_pred HHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccH
Confidence 9999999876532 22233211 1 11111 121 12223334444554444443333333333322221
Q ss_pred ---hcCCCcchhhhhhh-HHHHHHHHHHHH-hhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC
Q 036096 336 ---KLHFKPTMILRFLT-RTIYVGFTMFIA-MTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPR 398 (440)
Q Consensus 336 ---~~~~~~~~~~~~~~-~~~~~~~~~~ia-~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~ 398 (440)
+.|+ ++.+.+... ...+..+..++. ....+++.+.++.. ....+.|+++.+..++.++++
T Consensus 299 ~~~k~~~-~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 299 YLARLSA-RGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYAN--GIFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred HHHhhcc-CCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence 1122 233333332 222222222222 22457777777654 335688888888888876544
No 27
>PRK10746 putative transport protein YifK; Provisional
Probab=99.77 E-value=4e-15 Score=149.11 Aligned_cols=354 Identities=11% Similarity=0.102 Sum_probs=210.9
Q ss_pred cccCCchhhHHHHHhhhhhcchhcchHHH-HhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHh
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGLPYA-MSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAF 104 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 104 (440)
.+|+.+.++..+..++++||+|++..|.. .+.+|- ..++..++.+++.......+.|.....|..+ ++.+.+++.+
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG--g~~~y~~~~~ 84 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG--SFAVYAHRYM 84 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHh
Confidence 47889999999999999999999998754 667775 3555677788888888999999887777755 7889999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096 105 GEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 105 G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
||++| +.+.+..++.......+.....+.+++.+.+. .+...+..+..++ +.....+..+..+.++.....
T Consensus 85 g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-------~~~~~~~~~~~~~-~~~lN~~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 85 SPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-------MAQWIPALIAVAL-VALANLAAVRLYGEIEFWFAM 155 (461)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CchHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHH
Confidence 99999 88888888776666666666666665544332 2223333332222 222233345555444443333
Q ss_pred HHHHHHHHHHH----HH-HhcCCCCC-ccc-cCCCC--ccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCC
Q 036096 185 MSISYSVIAWV----AC-LHKGALPN-VDY-GLRAS--KTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSK 255 (440)
Q Consensus 185 ~~~~~~~i~~~----~~-~~~~~~~~-~~~-~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~ 255 (440)
..+..+++.++ .. ...+...+ ... ++... ..++++.++..++....|+|.|.+.+....+|+ |||+|
T Consensus 156 ~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP~k 231 (461)
T PRK10746 156 IKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA----KNPQV 231 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cChhh
Confidence 22221111111 11 11111110 000 11101 113457788999999999999999999999999 99987
Q ss_pred CCchhhhhHHHHHHHHHHHhHHhHHHhhcCCCch----hHH---hhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHH
Q 036096 256 KPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVE----DNV---LMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDM 328 (440)
Q Consensus 256 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~----~~i---l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 328 (440)
+++|++..+.....++|++..+......+.+.. ++. ..+... +....+.+.+..++.+.+....++...+.
T Consensus 232 -~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR~ 309 (461)
T PRK10746 232 -TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGRM 309 (461)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999988888888998865554443332211 111 122221 22334455555566665555555555555
Q ss_pred HHHHHhhh--------cCCCcchhhhhh-hHHHHHHHHHHHHhhccchhHHHHHhhh--hhhhhHHHHHHHHHHHHHhcC
Q 036096 329 LEAFLVKK--------LHFKPTMILRFL-TRTIYVGFTMFIAMTFPFFGGLLSFFGG--LAFAPTTYYIPCIIWLAIYKP 397 (440)
Q Consensus 329 ~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~ia~~~p~~~~i~~l~G~--~~~~~l~~ilP~l~~~~~~~~ 397 (440)
+...-+++ .|+ ...+.+.+ +.....++...+....|+-+.+++...+ ..+..+.|+++++.++|.+|+
T Consensus 310 l~~~a~~g~lP~~~~~~~~-~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 310 LYALAKNRQLPAAMAKVSR-HGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred HHHHHhCCCcCHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44443322 122 22333333 2222222333344445555555554442 233578889999888888764
Q ss_pred C
Q 036096 398 R 398 (440)
Q Consensus 398 ~ 398 (440)
+
T Consensus 389 ~ 389 (461)
T PRK10746 389 H 389 (461)
T ss_pred c
Confidence 3
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.76 E-value=3.1e-15 Score=150.50 Aligned_cols=354 Identities=13% Similarity=0.067 Sum_probs=202.8
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHH-HHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPY-AMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHA 103 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 103 (440)
+.+|+.+.++..+..+++++|+|++..|. +++++|. ..+...++.+++.......+.|.....+. ..++.+++++.
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~--~~~~~~ya~~~ 93 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLE--YKSFSDFASDL 93 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcHHHHHHHH
Confidence 46899999999999999999999999875 6777775 35556677788787777888887653333 22677899999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAA 183 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (440)
+||..| +++.+..++.......+.....+.++..+.+. .+.+.+.++... ++-....++.+....++.+..
T Consensus 94 ~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------~~~~~~~~~~~~-~~~~iN~~g~~~~~~i~~~~~ 164 (469)
T PRK11049 94 LGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------LSDWVASLAVVL-LLLSLNLATVKMFGEMEFWFA 164 (469)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CcHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHH
Confidence 999888 88888877766555555555566555544332 122222222222 222233446666666666655
Q ss_pred HHHHHHHHHHHHHHHh---cCC--CCC----ccccCCCC-ccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCC
Q 036096 184 VMSISYSVIAWVACLH---KGA--LPN----VDYGLRAS-KTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKP 253 (440)
Q Consensus 184 ~~~~~~~~i~~~~~~~---~~~--~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p 253 (440)
...+..+++.++.... .+. ..+ .+..++.. ..++++.++..++....|+|.|.+.+....+|+ |||
T Consensus 165 ~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----knP 240 (469)
T PRK11049 165 MIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET----KDP 240 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----cCH
Confidence 5443323222222111 111 111 11111111 113456678999999999999999999999999 999
Q ss_pred CCCCchhhhhHHHHHHHHHHHhHHhHHHhhcCCC-c---hhH---HhhCCCCchHHHHHHHHHHHHHHHHhhccccccHH
Q 036096 254 SKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQ-V---EDN---VLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVF 326 (440)
Q Consensus 254 ~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~-~---~~~---il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 326 (440)
+| +++|++..+...+.++|.+........-+.+ . +++ ...... .++...+...+..++.+.+.........
T Consensus 241 ~r-~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~s~~~~~~~~~~~~s 318 (469)
T PRK11049 241 EK-SLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVG-LPAAASVINFVVLTSAASSANSGVFSTS 318 (469)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 7999998777788888887765544322211 1 111 111111 1233444555555555544433333433
Q ss_pred HHHHHHHhh--------hcCCCcchhhhhhhHHHHH-HHHHHHHhhccchhHHHHHhhh--hhhhhHHHHHHHHHHHHHh
Q 036096 327 DMLEAFLVK--------KLHFKPTMILRFLTRTIYV-GFTMFIAMTFPFFGGLLSFFGG--LAFAPTTYYIPCIIWLAIY 395 (440)
Q Consensus 327 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~ia~~~p~~~~i~~l~G~--~~~~~l~~ilP~l~~~~~~ 395 (440)
+.+...-++ +.|++ +.+.+.+.....+ .+...+....|+....++.+-+ .....+.|+++++.+++.+
T Consensus 319 R~l~a~ardg~lP~~~~kv~~~-~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr 397 (469)
T PRK11049 319 RMLFGLAQEGVAPKAFAKLSKR-AVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYR 397 (469)
T ss_pred HHHHHHHhCCCCCHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 11222 3334433332222 2223333445654444443332 2234577888888888876
Q ss_pred cC
Q 036096 396 KP 397 (440)
Q Consensus 396 ~~ 397 (440)
|+
T Consensus 398 ~~ 399 (469)
T PRK11049 398 KQ 399 (469)
T ss_pred Hh
Confidence 54
No 29
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.76 E-value=2e-15 Score=154.07 Aligned_cols=358 Identities=12% Similarity=0.081 Sum_probs=220.3
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHHHH--hhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPYAM--SEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQH 102 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~--~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~ 102 (440)
+.+|+.+.++.++..+++++|+|++.+|... +.+|.. .++..++.++.+......+.|...+.|..+ +.....++
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sG--g~Y~y~~~ 101 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAG--SAYLYSYV 101 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cceeeHHH
Confidence 4589999999999999999999999998643 346643 455577888888889999999887777654 44556778
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCC----C-----CCCccc-hhhHHHHHHHHHHHhcCCCc
Q 036096 103 AFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCP----S-----CKDIRL-TYFIMIFASVHFVLSHLPSF 172 (440)
Q Consensus 103 ~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~----~-----~~~~~~-~~~~~i~~~i~~pl~~~~~l 172 (440)
.+|+.+| +++.+..++.......+.....++++..++....+ . .+.... .....+..++++-....++.
T Consensus 102 ~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gi 180 (557)
T TIGR00906 102 TVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGV 180 (557)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhch
Confidence 8999888 87888777776666666666666676666543111 0 011111 11111222222223445678
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCC---CCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCC
Q 036096 173 NSVAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLR---ASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPST 249 (440)
Q Consensus 173 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~ 249 (440)
+..++++.+.....+..++++++....+...++...... ....+.++.+++.++...+|+|.|.+.+....+|.
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~--- 257 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV--- 257 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc---
Confidence 888888888777665544444444443332222111000 01123356688999999999999999999999999
Q ss_pred CCCCCCCCchhhhhHHHHHHHHHHHhHHhHHHhhcCCC---chhH---HhhCCCCchHHHHHHHHHHHHHHHHhhccccc
Q 036096 250 PEKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQ---VEDN---VLMSLEKPRWLIAAANLFVVVHVIGSYQVYAM 323 (440)
Q Consensus 250 ~~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~---~~~~---il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 323 (440)
|||+| +++|++..+..+++++|.++.+.-....+.+ .+++ .+.... .++...+..+.....+..+....++
T Consensus 258 -knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~ 334 (557)
T TIGR00906 258 -KNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG-WGPAKYIVAVGALCGMSTSLLGGMF 334 (557)
T ss_pred -cCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 7999999999999999998876643322211 1122 222222 2455555556666666665555555
Q ss_pred cHHHHHHHHHhhhc--------CCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHh
Q 036096 324 PVFDMLEAFLVKKL--------HFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIY 395 (440)
Q Consensus 324 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~ 395 (440)
...+.+...-+++. |++.+.+.+...... .++.+++.. .+++.+.++.. .+..+.|.++++..+..|
T Consensus 335 ~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~--iv~~il~~~-~~~~~l~~l~s--ig~ll~y~lv~~~~l~lR 409 (557)
T TIGR00906 335 PLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSG--AIAALMAFL-FDLKALVDLLS--IGTLLAYSLVAACVLILR 409 (557)
T ss_pred HHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHH--HHHHHHHHH-cCHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 55555544433221 212222333332222 222333333 34666666543 345788999888777776
Q ss_pred cC
Q 036096 396 KP 397 (440)
Q Consensus 396 ~~ 397 (440)
++
T Consensus 410 ~~ 411 (557)
T TIGR00906 410 YQ 411 (557)
T ss_pred cc
Confidence 43
No 30
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.76 E-value=4.7e-15 Score=148.76 Aligned_cols=351 Identities=16% Similarity=0.144 Sum_probs=205.8
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchH-HHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLP-YAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHA 103 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP-~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 103 (440)
+.+|+.+.++..+..+++++|+|++.+| .+.++.|. .+++..++.+++.......+.|...+.|.++ +..+++++.
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G--g~~~~~~~~ 85 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG--SFSTYADDA 85 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 3579999999999999999999999999 55777775 4677788888888889999999887777654 778889999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAA 183 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (440)
+||++| +++.+..++.....+.+.....+.+++.+.+. .+.+.+.++..+ +.-....+..+....++....
T Consensus 86 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~-~~~~~n~~gv~~~~~~~~~~~ 156 (452)
T TIGR01773 86 IGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------IPLWLFSLILTI-VLTLTNLYSVKSYGEFEFWFA 156 (452)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------CcHHHHHHHHHH-HHHHHHHHhcchhhHHHHHHH
Confidence 999888 77888877776666666666666666554432 122222222222 222223345566666655554
Q ss_pred HHHHHHHHHHHHHHH--hcCCCCCc-----cccCCCC-ccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCC
Q 036096 184 VMSISYSVIAWVACL--HKGALPNV-----DYGLRAS-KTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSK 255 (440)
Q Consensus 184 ~~~~~~~~i~~~~~~--~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~ 255 (440)
+..+..+++.++..+ ..+..+.. +...+.. ..++++.++..++....|+|.|.+.+....+|+ |||+|
T Consensus 157 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~----k~P~r 232 (452)
T TIGR01773 157 LIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES----SNPIK 232 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh----cChhh
Confidence 433332221111111 11111111 1101101 113456679999999999999999999999999 99987
Q ss_pred CCchhhhhHHHHHHHHHHHhHHhHHHhhcCCCch---h-----HHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHH
Q 036096 256 KPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVE---D-----NVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFD 327 (440)
Q Consensus 256 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~---~-----~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 327 (440)
+++|++..+......+|++..+......+.+.. + ...+.... ++...+...+..++.+.+..-......+
T Consensus 233 -~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~-~~~~~ii~~~~~~~~~~~~~~~~~~~sR 310 (452)
T TIGR01773 233 -SITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGI-PHAKLIMDFVVLTAVLSCLNSALYTTSR 310 (452)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999888888899998875544433331111 0 12222221 2333444455555555554444444444
Q ss_pred HHHHHHhhh--------cCCCcchhhhhhhHHHHHHH-HHHHHhhccc--hhHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 036096 328 MLEAFLVKK--------LHFKPTMILRFLTRTIYVGF-TMFIAMTFPF--FGGLLSFFGGLAFAPTTYYIPCIIWLAIYK 396 (440)
Q Consensus 328 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~ia~~~p~--~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~ 396 (440)
.....-+++ .|+ .+.+.+.+.....+.. ..++...-++ ++.+.+..+. ...+.|++.++.+++.++
T Consensus 311 ~~~a~ardg~lP~~~~~v~~-~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~--~~~~~y~~~~~~~i~~r~ 387 (452)
T TIGR01773 311 MLYSLAERGDAPRVFMKLNK-KGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGA--IALLVYLVIAVSQLRMRK 387 (452)
T ss_pred HHHHHHhCCCcCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 444333321 122 2333333322222222 2222111111 2333433332 246888888777777654
No 31
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.76 E-value=4.8e-15 Score=148.53 Aligned_cols=352 Identities=14% Similarity=0.132 Sum_probs=208.5
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHHH-HhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPYA-MSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHA 103 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 103 (440)
+.+|+.+.++..+..+++++|+|++..|.. .+++|- ..++..++.+++.......+.|...+.|..+ ++.+.+++.
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG--g~y~~~~~~ 85 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG--SFSHFAYKY 85 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 458999999999999999999999998865 566664 4556678888888888889999887777755 788889999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAA 183 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (440)
+||..| +.+.+..++.....+.+.....+++++.+.+. .+.+.+.++...+ .-.......+....++.+..
T Consensus 86 ~g~~~g-f~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~i~~~~-~~~lN~~gv~~~~~~~~~~~ 156 (456)
T PRK10238 86 WGSFAG-FASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------IPTWVSAAVFFVV-INAINLTNVKVFGEMEFWFA 156 (456)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------CcHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHH
Confidence 999888 88888888887777777777777766554332 2223232222222 22222335555656665554
Q ss_pred HHHHHHHHHHHH---HHHhcCC-CCC--ccccCCCCc-cccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCC
Q 036096 184 VMSISYSVIAWV---ACLHKGA-LPN--VDYGLRASK-TTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKK 256 (440)
Q Consensus 184 ~~~~~~~~i~~~---~~~~~~~-~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~ 256 (440)
.+.+..+++.++ .....+. .+. .+..++... .++++.++..+++...|+|.|.+.+....+|+ |||+|
T Consensus 157 ~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r- 231 (456)
T PRK10238 157 IIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ- 231 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh-
Confidence 444332221111 1111111 111 111111111 13456677788889999999999999999999 99987
Q ss_pred CchhhhhHHHHHHHHHHHhHHhHHH--hhcCCC--chhH---HhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHH
Q 036096 257 PMWKGVVIAYLLVAFCYFPVAMVGY--WAFGNQ--VEDN---VLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDML 329 (440)
Q Consensus 257 ~~~~~~~~s~~~~~~~y~~~g~~gy--~~fg~~--~~~~---il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 329 (440)
+++|++..+.....++|+..-.... ....+- ..++ ++.+... .+...+.+.+..++.+.+..-..+...+.+
T Consensus 232 ~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~-~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l 310 (456)
T PRK10238 232 SIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGD-TFVANALNIVVLTAALSVYNSCVYCNSRML 310 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999998888888888866533321 111111 1111 2222222 333444555555555555444445544444
Q ss_pred HHHHhhh--------cCCCcchhhhhhhHHHHHH-HHHHHHhhcc--chhHHHHHhhhhhhhhHHHHHHHHHHHHHhcC
Q 036096 330 EAFLVKK--------LHFKPTMILRFLTRTIYVG-FTMFIAMTFP--FFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKP 397 (440)
Q Consensus 330 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~ia~~~p--~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~ 397 (440)
...-+++ .++ ++.+.+.+.....+. +..++....| .++.+.++ +..+..+.|.+|++.+++.+|+
T Consensus 311 ~a~ardg~lP~~f~kv~~-~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~--~~~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 311 FGLAQQGNAPKALASVDK-RGVPVNTILVSALVTALCVLINYLAPESAFGLLMAL--VVSALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HHHHhCCCccHHHHhhCc-CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3332221 122 233444333332222 2222222223 24455555 3345678999999999987653
No 32
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.75 E-value=9.7e-15 Score=146.58 Aligned_cols=239 Identities=13% Similarity=0.138 Sum_probs=156.8
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHHH-HhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPYA-MSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHA 103 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 103 (440)
+.+|+.+.++.++..+++++|+|++.+|.. .+.+|- ..++..++.+++.......+.|...+.|..+ +..+++++.
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G--g~y~y~~~~ 82 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS--SFSRYAQEN 82 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 457889999999999999999999999876 556664 4677788888888899999999887777654 677789999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAA 183 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (440)
+||.+| +++.+..++.............+.+.+.+.+. .+...+.+... ++.-....++.+....++.+..
T Consensus 83 ~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~l~~~ln~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 83 LGPLAG-YITGWTYCFEILIVAIADVTAFGIYMGVWFPT-------VPHWIWVLSVV-LIICAVNLMSVKVFGELEFWFS 153 (457)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CChHHHHHHHH-HHHHHHHHccchhHHHHHHHHH
Confidence 999888 77777777665554444444455444443321 22233322222 2223334456666666665544
Q ss_pred HHHHHHHHHHHHHH----Hh---cCC-CCCccccCCC-CccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCC
Q 036096 184 VMSISYSVIAWVAC----LH---KGA-LPNVDYGLRA-SKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPS 254 (440)
Q Consensus 184 ~~~~~~~~i~~~~~----~~---~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~ 254 (440)
...+..+++.++.. .. +.. ..+.+..++. ...++++.++..++....|+|.|.+......+|+ |||+
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~ 229 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----KDPE 229 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChh
Confidence 43332222111111 11 111 1111111111 1123456678889999999999999999999999 9998
Q ss_pred CCCchhhhhHHHHHHHHHHHhHHhHH
Q 036096 255 KKPMWKGVVIAYLLVAFCYFPVAMVG 280 (440)
Q Consensus 255 ~~~~~~~~~~s~~~~~~~y~~~g~~g 280 (440)
| +.+|++..+.....++|.......
T Consensus 230 k-~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 230 K-SIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 789999988888888887775543
No 33
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.75 E-value=4e-15 Score=149.01 Aligned_cols=243 Identities=16% Similarity=0.150 Sum_probs=153.3
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHHH-HhhhCch-HHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPYA-MSEIGWG-PGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQH 102 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~-~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~ 102 (440)
+.+|+.+.++.+...+++++|+|++..|.. .+..|-. ..+...++.+++.......+.|.....|+++ ......++
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~G--G~y~y~~~ 82 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENG--ADYVYLKN 82 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CceeeHHH
Confidence 457899999999999999999999999976 4455643 2455577778888888889999877776644 33455778
Q ss_pred HhccchhhHHHHHH-HHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHH
Q 036096 103 AFGEKLGLWIIVPQ-QLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLA 181 (440)
Q Consensus 103 ~~G~~~g~~~~~~~-~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 181 (440)
.+||.+| ++..+. .+.........+....++++....+. +... .....+..++.+-....++.+....++.+
T Consensus 83 ~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~-----~~~~-~~~~~~~~~~~~~~ln~~gv~~~~~v~~~ 155 (445)
T PRK11357 83 AGSRPLA-FLSGWASFWANDAPSLSIMALAIVSNLGFLTPI-----DPLL-GKFIAAGLIIAFMLLHLRSVEGGAAFQTL 155 (445)
T ss_pred hcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----chHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 8999888 555554 33333334445555666665443221 1000 01111111222222334566666677766
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccCCCC-ccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchh
Q 036096 182 AAVMSISYSVIAWVACLHKGALPNVDYGLRAS-KTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWK 260 (440)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~ 260 (440)
.....+..++++++........++.+...+.. ....++.++..++....|+|.|.+......+|+ |||+| +++|
T Consensus 156 ~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iP~ 230 (445)
T PRK11357 156 ITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEI----KNPGK-TMPR 230 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc-cchH
Confidence 66554443322222222111111111110000 111225677888999999999999999999999 99987 7999
Q ss_pred hhhHHHHHHHHHHHhHHhHHH
Q 036096 261 GVVIAYLLVAFCYFPVAMVGY 281 (440)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy 281 (440)
++..+..+++++|.+......
T Consensus 231 Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 231 ALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998766543
No 34
>PRK10836 lysine transporter; Provisional
Probab=99.75 E-value=1.2e-14 Score=146.98 Aligned_cols=351 Identities=15% Similarity=0.127 Sum_probs=193.7
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHH-HHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPY-AMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHA 103 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 103 (440)
+.+|+.+.++..+..+++++|+|++.+|. +.+++|-...++..++.+++....+..+.|...+.|..+ +....+++.
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG--g~y~y~~~~ 89 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG--SFATYGQNY 89 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Confidence 45788999999999999999999999996 567777543567788899999999999999888888765 777889999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAA 183 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (440)
+|+.+| +++.+..++.. ..+.+........ ..+.+.+ ..+...+..+..++ +-.....+.+..+..+.+..
T Consensus 90 ~g~~~g-f~~Gw~~~~~~-~~~~a~~~~a~~~---~~~~~~~---~~~~~~~~~~~~~~-~~~lN~~gv~~~~~~~~~~~ 160 (489)
T PRK10836 90 VEEGFG-FALGWNYWYNW-AVTIAVDLVAAQL---VMSWWFP---DTPGWIWSALFLGV-IFLLNYISVRGFGEAEYWFS 160 (489)
T ss_pred cChHHH-HHHHHHHHHHH-HHHHHHHHHHHHH---HhhhcCC---CCchHHHHHHHHHH-HHHHHHHcchhhhhhHHHHH
Confidence 999888 66666666533 2222222222221 1111111 11112222222222 22223334554444443333
Q ss_pred HHHHHHHHHHH---HHH---HhcCCCCCccc-cCCC--CccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCC
Q 036096 184 VMSISYSVIAW---VAC---LHKGALPNVDY-GLRA--SKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPS 254 (440)
Q Consensus 184 ~~~~~~~~i~~---~~~---~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~ 254 (440)
+..+..++..+ ... ..++.. ..+. ++.. .+.+.++..+..++....|+|.|.+.+....+|+ |||+
T Consensus 161 ~~ki~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~ 235 (489)
T PRK10836 161 LIKVTTVIVFIIVGVLMIIGIFKGAE-PAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES----EDPA 235 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCC-CCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHH
Confidence 32221111111 111 111111 0000 1110 1112345566666667789999999999999999 9998
Q ss_pred CCCchhhhhHHHHHHHHHHHhHHhHHHhhcCCCchh------------H---HhhCCCCchHHHHHHHHHHHHHHHHhhc
Q 036096 255 KKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVED------------N---VLMSLEKPRWLIAAANLFVVVHVIGSYQ 319 (440)
Q Consensus 255 ~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~------------~---il~~~~~~~~~~~~~~~~~~~~~~~~~p 319 (440)
| +++|++..+...+.++|++....-....+.+..+ + .+.+.. ..+...+...+..++.+.+..
T Consensus 236 r-~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g-~~~~~~ii~~~il~a~~~~~n 313 (489)
T PRK10836 236 K-NIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAG-LLSAAAVMNAVILTAVLSAGN 313 (489)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcC-ChhHHHHHHHHHHHHHHHHHH
Confidence 7 8999999999999999998876544433321111 1 111111 122234445555556555555
Q ss_pred cccccHHHHHHHHHhhh--------cCCCcchhhhhhhHHHHHHHHHHHHhhccc---hhHHHHHhhhhhhhhHHHHHHH
Q 036096 320 VYAMPVFDMLEAFLVKK--------LHFKPTMILRFLTRTIYVGFTMFIAMTFPF---FGGLLSFFGGLAFAPTTYYIPC 388 (440)
Q Consensus 320 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~---~~~i~~l~G~~~~~~l~~ilP~ 388 (440)
-.++...+.....-+++ .|+ ...+.+.+.....+.....+....++ +..+.++.+ ....+.|++.+
T Consensus 314 ~~~~~~sR~l~a~Ardg~lP~~~~kv~~-~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~ 390 (489)
T PRK10836 314 SGMYASTRMLYTLACDGKAPRIFAKLSR-GGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSG--MTGFIAWLGIA 390 (489)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 45555555544433321 122 22333333322222222222212222 223344433 34567888888
Q ss_pred HHHHHHhc
Q 036096 389 IIWLAIYK 396 (440)
Q Consensus 389 l~~~~~~~ 396 (440)
+.+++.||
T Consensus 391 ~a~l~~R~ 398 (489)
T PRK10836 391 ISHYRFRR 398 (489)
T ss_pred HHHHHHHH
Confidence 88888765
No 35
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.74 E-value=2.5e-15 Score=142.82 Aligned_cols=352 Identities=15% Similarity=0.162 Sum_probs=232.7
Q ss_pred ccccCCchhhHHHHHhhhhhcchh-cchHHHHhhhCchHHHHH-HHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGV-LGLPYAMSEIGWGPGIAV-IVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQH 102 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~-l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~ 102 (440)
+.+|..+.++--++-++..||+|. ++-..+.+.+| |++++ .++.|++..+-+..+.|....+|..+ |+.+++++
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~g--SF~~~a~~ 85 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVANPVSG--SFSDYARK 85 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cHHHHHHH
Confidence 457889999999999999999995 55677888999 67776 68899999999999999887667644 99999999
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHH--hcCCCcchhh-HHH
Q 036096 103 AFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVL--SHLPSFNSVA-VVS 179 (440)
Q Consensus 103 ~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl--~~~~~l~~l~-~~s 179 (440)
.+|++.| ++..+.+++.-...+.+-+..++.+++.++++ .+++.+.+...+++... ...|....+. |++
T Consensus 86 ~lG~~Ag-f~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfA 157 (462)
T COG1113 86 YLGPWAG-FLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------VPQWVFALAAVVLLLAVNLISVKVFGELEFWFA 157 (462)
T ss_pred HhcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888 99999999999999999999999999888765 24455555544444332 3345455554 333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC-----ccccC-CCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCC
Q 036096 180 LAAAVMSISYSVIAWVACLHKGALPN-----VDYGL-RASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKP 253 (440)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p 253 (440)
.+-+. .++..+++-...+..+...+ .+.-+ +.--.|+++.+++.++-+.+|||.|.+.+-.-.+|- |||
T Consensus 158 lIKV~-aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~dP 232 (462)
T COG1113 158 LIKVA-AIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA----KDP 232 (462)
T ss_pred HHHHH-HHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----cCh
Confidence 33333 22222221222222222111 11111 111246788999999999999999999999999998 999
Q ss_pred CCCCchhhhh-----HHHHHHHHHHHhHHhHHHhhcCCCchh--HHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHH
Q 036096 254 SKKPMWKGVV-----IAYLLVAFCYFPVAMVGYWAFGNQVED--NVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVF 326 (440)
Q Consensus 254 ~~~~~~~~~~-----~s~~~~~~~y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 326 (440)
+| .++|+.. +...-+..+.++..+..+-.++++..+ .++...+- .+...+.+..+..+..+++---++...
T Consensus 233 ~k-~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi-~~Aa~i~N~VVLtAa~S~~NSglysts 310 (462)
T COG1113 233 EK-AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGI-PFAAGIMNFVVLTAALSALNSGLYSTS 310 (462)
T ss_pred hh-HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCC-cccccceeEEEeechhhcccccccccc
Confidence 88 6788775 444444555555666666666553333 22333321 334445555566666666666667776
Q ss_pred HHHHHHHhhhc--------CCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhh--hhhhhHHHHHHHHHHHHHhc
Q 036096 327 DMLEAFLVKKL--------HFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGG--LAFAPTTYYIPCIIWLAIYK 396 (440)
Q Consensus 327 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~--~~~~~l~~ilP~l~~~~~~~ 396 (440)
+++.....+.. +++.-......++.....+..++.+..| +.++.++-+ .......+.+-.+.++|.||
T Consensus 311 RmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 311 RMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred hHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666543221 1222234456677777788888888888 444444432 23345556667788888877
Q ss_pred C
Q 036096 397 P 397 (440)
Q Consensus 397 ~ 397 (440)
.
T Consensus 389 ~ 389 (462)
T COG1113 389 A 389 (462)
T ss_pred c
Confidence 3
No 36
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.73 E-value=1e-14 Score=148.07 Aligned_cols=248 Identities=13% Similarity=0.161 Sum_probs=156.6
Q ss_pred cccccCCchhhHHHHHhhhhhcchhcchHHH-HhhhCch-HHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHH
Q 036096 24 ITKSRNAKWWYSAFHNVTAMVGAGVLGLPYA-MSEIGWG-PGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQ 101 (440)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~-~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 101 (440)
++.+|+.+.++.++..+++++|+|++..|.. .+++|-. ..++..++.+++.......+.|.....|.++ ......+
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sG--G~y~~~~ 115 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSG--GEYNYIL 115 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhHH
Confidence 4568889999999999999999999999875 5556633 1234456777778888888999877777654 6667788
Q ss_pred HHhccchhhHHHHHHHHH-HHHHHHHHHHHHhhhhhHH-hhhhhCCCCCCccchhhHHH--HHHHHHHHhcCCCcchhhH
Q 036096 102 HAFGEKLGLWIIVPQQLL-VEVGVDIMYMLTGGQCLKK-FHDTVCPSCKDIRLTYFIMI--FASVHFVLSHLPSFNSVAV 177 (440)
Q Consensus 102 ~~~G~~~g~~~~~~~~~~-~~~~~~~~y~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~i--~~~i~~pl~~~~~l~~l~~ 177 (440)
+.+||++| ++..+..+. ...+.+..+....++++.+ +.+.. ..+......+ ..+++.-....++.+....
T Consensus 116 ~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~-----~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~ 189 (501)
T TIGR00911 116 EVFGPLLA-FLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC-----EVPEWAIRLVAVLCVLLLTLVNCLSVKWATR 189 (501)
T ss_pred hHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999888 555544333 2223344444445554322 22211 0111111111 1122222334556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCC
Q 036096 178 VSLAAAVMSISYSVIAWVACLH---KGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPS 254 (440)
Q Consensus 178 ~s~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~ 254 (440)
++.+.....+..+++.++..+. .+..++.++.........+..++..++....|+|.|.+.+....+|+ |||+
T Consensus 190 ~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~ 265 (501)
T TIGR00911 190 VQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPY 265 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCch
Confidence 7777766555433333322221 11111111110001111345678889999999999999999999999 9998
Q ss_pred CCCchhhhhHHHHHHHHHHHhHHhHHHhhc
Q 036096 255 KKPMWKGVVIAYLLVAFCYFPVAMVGYWAF 284 (440)
Q Consensus 255 ~~~~~~~~~~s~~~~~~~y~~~g~~gy~~f 284 (440)
| +.+|++..+..++.++|.+..+.-....
T Consensus 266 r-~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 266 R-TLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7 7999999999999999999866554333
No 37
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.72 E-value=6e-14 Score=141.84 Aligned_cols=350 Identities=13% Similarity=0.111 Sum_probs=203.6
Q ss_pred ccCCchhhHHHHHhhhhhcchhcchHH-HHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cccccHHHHHHHHh
Q 036096 27 SRNAKWWYSAFHNVTAMVGAGVLGLPY-AMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPG-KRFDRYYELGQHAF 104 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~-~~~~~y~~~~~~~~ 104 (440)
+|+.+.++..+..+++++|+|++..|. +.++.|-...+...++.+++.......+.|.....|. .+ .|.+++++.+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG--~~~~~~~~~~ 78 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG--SFATYASRFV 78 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHc
Confidence 477899999999999999999998774 5667774333555778888888888899998877773 22 6788999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096 105 GEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 105 G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
||++| +++.+..++.....+.+.....+.++..+.+ ..+...+..+.. +++-+...++.+..+.++.+...
T Consensus 79 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 79 DPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------KVNPAVWIAIFY-VFIVIINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHH
Confidence 99889 7888888777776666666666666554322 122233333222 22223345566766666665544
Q ss_pred HHHHHHHHHHH---HHHhcCC-CCC-ccc-cCCC-Cccc-----cchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCC
Q 036096 185 MSISYSVIAWV---ACLHKGA-LPN-VDY-GLRA-SKTT-----GNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEK 252 (440)
Q Consensus 185 ~~~~~~~i~~~---~~~~~~~-~~~-~~~-~~~~-~~~~-----~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~ 252 (440)
..+..++..++ .....+. .++ ... .+.. ...+ ..+.++..++....|+|.|.+.+....+|+ ||
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----kn 225 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA----AN 225 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh----cC
Confidence 33222211111 1111111 110 000 0000 0011 125678889999999999999999999999 99
Q ss_pred CCCCCchhhhhHHHHHHHHHHHhHHhHHHhhcCCCch-------------hHH---hhCCCCchHHHHHHHHHHHHHHHH
Q 036096 253 PSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVE-------------DNV---LMSLEKPRWLIAAANLFVVVHVIG 316 (440)
Q Consensus 253 p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~-------------~~i---l~~~~~~~~~~~~~~~~~~~~~~~ 316 (440)
|+| +++|++..+...+.++|.+..+......+.+.. ++. ..... ..+...+..++..++.+.
T Consensus 226 P~r-~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~s~~~ 303 (478)
T TIGR00913 226 PRK-SIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHG-IKVLPHIFNAVILISVLS 303 (478)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcC-CchHhHHHHHHHHHHHHH
Confidence 987 899999999999999999975543222221110 111 12221 123334455555556555
Q ss_pred hhccccccHHHHHHHHHhhh--------cCCCcchhhhhhhHHHHHHHHHHHHhhc---cchhHHHHHhhhhhhhhHHHH
Q 036096 317 SYQVYAMPVFDMLEAFLVKK--------LHFKPTMILRFLTRTIYVGFTMFIAMTF---PFFGGLLSFFGGLAFAPTTYY 385 (440)
Q Consensus 317 ~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ia~~~---p~~~~i~~l~G~~~~~~l~~i 385 (440)
+..-......+.+...-+++ .|+ ...+.+.+.....+....++.... ..++.+.++. .....+.|+
T Consensus 304 ~~~~~~~~~sR~l~a~ardg~lP~~f~k~~~-~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~--~~~~~i~y~ 380 (478)
T TIGR00913 304 AANSSLYASSRTLYALAHQGLAPKIFAYVDR-RGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNIS--GLSGFFTWM 380 (478)
T ss_pred HHHhhHHHHHHHHHHHHhCCcccHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHH--HHHHHHHHH
Confidence 54444444444444332221 122 233344333333222211111111 1234444442 234568889
Q ss_pred HHHHHHHHHhc
Q 036096 386 IPCIIWLAIYK 396 (440)
Q Consensus 386 lP~l~~~~~~~ 396 (440)
++++.+++.+|
T Consensus 381 ~~~~~~i~~r~ 391 (478)
T TIGR00913 381 CICLSHIRFRK 391 (478)
T ss_pred HHHHHHHHHHH
Confidence 99988888764
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.72 E-value=6.4e-14 Score=140.22 Aligned_cols=238 Identities=15% Similarity=0.128 Sum_probs=156.9
Q ss_pred cccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhc
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFG 105 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 105 (440)
.+|+.|.++..+..+++++|+.....+..++..|+...+...++.+++.......+.|...+.|.++ .....+++.+|
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G--g~y~~~~~~~G 82 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG--GGYGFARRAFG 82 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHhC
Confidence 5788999999999999999855566678888888764455566667777777788899887777755 67788999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 036096 106 EKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVM 185 (440)
Q Consensus 106 ~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (440)
|+.| ++..+..++.......++....++++..+++.. +.+...++... ++-+...+..+..+.++.+..+.
T Consensus 83 ~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-------~~~~~~~~~~~-~~~~ln~~g~~~~~~i~~~~~~~ 153 (442)
T TIGR00908 83 PWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-------PGWLAALVFYI-VFIGINILGVGEAAKLEFVVTAV 153 (442)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------chhHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHH
Confidence 9888 777888877777777777778888777665431 11222222222 22223344556666665554443
Q ss_pred HHHHHHHHHHHHHhcCCCCCcc-ccCC--CCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhh
Q 036096 186 SISYSVIAWVACLHKGALPNVD-YGLR--ASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGV 262 (440)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~ 262 (440)
.++.+++.......+....+.. ..+. ....+.++.++..++....|+|.|++.+....+|+ |||+| +.+|++
T Consensus 154 ~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iprai 228 (442)
T TIGR00908 154 AIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKR-DIPRGL 228 (442)
T ss_pred HHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-ccCHHH
Confidence 3332222221111111111100 0000 00112345578888899999999999999999999 99987 789999
Q ss_pred hHHHHHHHHHHHhHHhH
Q 036096 263 VIAYLLVAFCYFPVAMV 279 (440)
Q Consensus 263 ~~s~~~~~~~y~~~g~~ 279 (440)
..+..++..+|......
T Consensus 229 ~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 229 IGAILTLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998888876443
No 39
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.71 E-value=3.3e-14 Score=151.84 Aligned_cols=246 Identities=15% Similarity=0.153 Sum_probs=165.3
Q ss_pred ccccCCchhhHHHHH-hhhhhcchhcc-hHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCcccccHHHHHH
Q 036096 25 TKSRNAKWWYSAFHN-VTAMVGAGVLG-LPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEM-VPGKRFDRYYELGQ 101 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l-~~~~iG~GiL~-lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~~~~y~~~~~ 101 (440)
.+.++.++++.++.- +.+|+|+|++- +++...++|...+++.+++.++++..+...+.+.... .+..+ .-..+.+
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG--G~Y~yis 150 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG--GAYYLIS 150 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHH
Confidence 446788999999998 99999999866 5677889998778888999999999999999987664 44332 3346678
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCC--CCCCc-cchhhHHHHHHHHHHHhcCCCcchhhHH
Q 036096 102 HAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCP--SCKDI-RLTYFIMIFASVHFVLSHLPSFNSVAVV 178 (440)
Q Consensus 102 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~--~~~~~-~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 178 (440)
+.+|+.+| ..+.+..++.+...+..|.+..++++..+++.... ..... +...+.++. ++++.+....+.+....+
T Consensus 151 ralGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~-l~ll~~In~~Gvk~~ak~ 228 (953)
T TIGR00930 151 RSLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVT-VVVLLGISFAGMEWENKA 228 (953)
T ss_pred HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHH-HHHHHHHHHhhHHHHHHH
Confidence 99999888 77777888888888888998888888887653210 00011 112222222 222223334566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC---C---cccc-C--CCCcc-ccchhhHHHHHHHHHHhccCCcchHhhhhhCCC
Q 036096 179 SLAAAVMSISYSVIAWVACLHKGALP---N---VDYG-L--RASKT-TGNVFNFFSALGDVAFAFAGHNVVLEIQASIPS 248 (440)
Q Consensus 179 s~~~~~~~~~~~~i~~~~~~~~~~~~---~---~~~~-~--~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 248 (440)
+.+.+++.++.++.+++..+...... + .+.. + +..+. +....++...++++++||.|......+.+|+
T Consensus 229 q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl-- 306 (953)
T TIGR00930 229 QVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL-- 306 (953)
T ss_pred HHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 77666654433333222222111000 0 0000 0 00111 1122347788888889999999999999999
Q ss_pred CCCCCCCCCchhhhhHHHHHHHHHHHhHHhH
Q 036096 249 TPEKPSKKPMWKGVVIAYLLVAFCYFPVAMV 279 (440)
Q Consensus 249 ~~~~p~~~~~~~~~~~s~~~~~~~y~~~g~~ 279 (440)
|||+| +++|++..+..+++++|+++.+.
T Consensus 307 --KnP~r-~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 307 --KDPQK-AIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred --cChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 89999999999999999999764
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.69 E-value=8.2e-14 Score=139.25 Aligned_cols=338 Identities=14% Similarity=0.122 Sum_probs=201.5
Q ss_pred HHhhhhhcchhcchHH-HHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccchhhHHHHHH
Q 036096 38 HNVTAMVGAGVLGLPY-AMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQ 116 (440)
Q Consensus 38 ~l~~~~iG~GiL~lP~-a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~~~ 116 (440)
..+++++|+|++..|. +.++.|. ..++..++.+++....+..+.|...+.|.++ +..+.+++.+||++| +.+.+.
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G--g~y~y~~~~~G~~~g-f~~gw~ 77 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG--SFSTYADKAIGRWAG-YTIGWL 77 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHcChHHH-HHHHHH
Confidence 3578999999999986 6778885 4677788889999999999999887777655 788899999999888 777777
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 036096 117 QLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIAWVA 196 (440)
Q Consensus 117 ~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~ 196 (440)
.++.............+..++...+ ..+...+.++..++ +-+...++.+..+.++.+.....+..+++.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~-~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~ 149 (446)
T PRK10197 78 YWWFWVLVIPLEANIAAMILHSWVP-------GIPIWLFSLVITLA-LTGSNLLSVKNYGEFEFWLALCKVIAILAFIFL 149 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-------cCcHHHHHHHHHHH-HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 7776555554444444433333221 11222222222222 222334456666666666655444333322222
Q ss_pred HHh--cCCCCCcc-----ccCC-CCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHHHHH
Q 036096 197 CLH--KGALPNVD-----YGLR-ASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYLL 268 (440)
Q Consensus 197 ~~~--~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~ 268 (440)
.+. .+..+..+ +.++ ....++++.++..++....|+|.|.+.+....+|+ |||+| +++|++..+...
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~ 224 (446)
T PRK10197 150 GAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIWR 224 (446)
T ss_pred HHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHHH
Confidence 221 22111100 1111 01124456789999999999999999999999999 99987 899999999999
Q ss_pred HHHHHHhHHhHHHhhcCCCch-----h---HHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhh----
Q 036096 269 VAFCYFPVAMVGYWAFGNQVE-----D---NVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKK---- 336 (440)
Q Consensus 269 ~~~~y~~~g~~gy~~fg~~~~-----~---~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---- 336 (440)
+.++|++..+.-......+.. + ........ ++...+.+.+..++.+.+..-.++...+.+...-+++
T Consensus 225 i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~ 303 (446)
T PRK10197 225 ISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA 303 (446)
T ss_pred HHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH
Confidence 999999876664333221111 1 12333332 3444555666666666666655555555554443321
Q ss_pred ----cCCCcchhhhhhhHH-HHHHHHHHHHhhcc--chhHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 036096 337 ----LHFKPTMILRFLTRT-IYVGFTMFIAMTFP--FFGGLLSFFGGLAFAPTTYYIPCIIWLAIYK 396 (440)
Q Consensus 337 ----~~~~~~~~~~~~~~~-~~~~~~~~ia~~~p--~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~ 396 (440)
.| +.+.+.+.+... .+..+..+.....| .++.++++.+... .+.|+++++.+++.||
T Consensus 304 ~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 304 VMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred HHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 12 123333333332 22222222222222 3666777655444 4888888888888765
No 41
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.68 E-value=1.1e-13 Score=138.04 Aligned_cols=350 Identities=14% Similarity=0.157 Sum_probs=211.1
Q ss_pred CchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHH-HHHHHHHHHhhhccCCcccccHHHHHHHHhccch
Q 036096 30 AKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIIT-LYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKL 108 (440)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~-~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~ 108 (440)
.|+++++...+++++|+|++..| .....|.. .++..++.+.+. ......+.|...+.|+++ +.....++.+||++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G--G~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG--GIYVWVSRAFGPFW 76 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST--THHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC--eeeehhhhcccccc
Confidence 36889999999999999999999 66666654 555555555555 567778888766666654 77788999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHH--HHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 036096 109 GLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIM--IFASVHFVLSHLPSFNSVAVVSLAAAVMS 186 (440)
Q Consensus 109 g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 186 (440)
| ++..+..++.......++.....+++...+.... .. +...... +..++.......++.|..++++.+...+.
T Consensus 77 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 151 (426)
T PF13520_consen 77 G-FIVGWLYWVAYILSLASVASSFASYLLSLFGPDL---NP-SPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIK 151 (426)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGG---TC-SHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred h-hcccceeEEEeeccccccccchhhhhhhcccccc---cc-ccchheeeeecccccceEeeechhhhhhhhhhhhhhhh
Confidence 8 7778888887777777777777777766553210 00 1111112 22222333344567888888887777766
Q ss_pred H-HHHHHHHHHHHhcCCCCCccc--cCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhh
Q 036096 187 I-SYSVIAWVACLHKGALPNVDY--GLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVV 263 (440)
Q Consensus 187 ~-~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 263 (440)
+ ..+++.++..+.....+..+. .......+..+.....++...+|+|.|.+..+...+|+ || ++.+|++.
T Consensus 152 i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~---k~ip~ai~ 224 (426)
T PF13520_consen 152 IVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN---KTIPRAII 224 (426)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS---HHHHHHHH
T ss_pred hhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccc----cc---hhheeecc
Confidence 5 333333334444333222210 00111223344467899999999999999999999998 55 36889999
Q ss_pred HHHHHHHHHHHhHHhHHHhhcCCCchh---H-------HhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHH
Q 036096 264 IAYLLVAFCYFPVAMVGYWAFGNQVED---N-------VLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFL 333 (440)
Q Consensus 264 ~s~~~~~~~y~~~g~~gy~~fg~~~~~---~-------il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 333 (440)
.+..++.++|.+..+.-....+++..+ + ..+... .++...+..++..+..+.+....+....+......
T Consensus 225 ~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 225 ISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc-ccccccccccccccccccccchhhcchhhcccccc
Confidence 999999999999977766555432211 1 111111 13455566667777777777777766666666665
Q ss_pred hhhc------CC-CcchhhhhhhHHHHHHHHHHHHh-hcc--chhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC
Q 036096 334 VKKL------HF-KPTMILRFLTRTIYVGFTMFIAM-TFP--FFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPR 398 (440)
Q Consensus 334 ~~~~------~~-~~~~~~~~~~~~~~~~~~~~ia~-~~p--~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~ 398 (440)
+++. +. +.+.+.+...-...+.....+.. ..| +++.+.+.. .....+.++++.+..++.++++
T Consensus 304 ~d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~ 376 (426)
T PF13520_consen 304 RDGVLPKWFAKVNKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLS--SVGYLISYILVILAVLFLRRKR 376 (426)
T ss_dssp HTTSSSGGGGTTSSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHH--HHHTHHHHHHHHHHHHHTHHHS
T ss_pred cccchhhhhhhccccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc
Confidence 5432 11 12223333322222221221222 223 345555543 3345667777776666665443
No 42
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.68 E-value=4.2e-14 Score=137.62 Aligned_cols=336 Identities=15% Similarity=0.190 Sum_probs=203.5
Q ss_pred cCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccc
Q 036096 28 RNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEK 107 (440)
Q Consensus 28 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~ 107 (440)
++.|.+|..+.++++++|+|++.+|....+.+--.+++..++.++........+.+...++|++ +..++.++.+||+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~---~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK---NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhhHH
Confidence 3678899999999999999999999987665555688888888899989999999988877764 7899999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHH
Q 036096 108 LGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSI 187 (440)
Q Consensus 108 ~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 187 (440)
.| .+..+....+............++.+.... . + ..+ .....+..+++.-....++++....++.+.....+
T Consensus 78 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~--~tp-~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 78 LG-RLLSILFILYFFLIAAYLIRIFADFIKTYL---L-P--RTP-IIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-C--CCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 88 555566655555554444434444443221 1 1 111 12222222333333445688888888887776544
Q ss_pred HH-HHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHH-HHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHH
Q 036096 188 SY-SVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALG-DVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIA 265 (440)
Q Consensus 188 ~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s 265 (440)
.. .++.........+.++..| ..++++.+...+.- ...++|.+.+......+++ |||+| .+|+...+
T Consensus 150 ~~~~~il~~~~~~~~~~~~l~P-----~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~--~~k~~~~~ 218 (359)
T TIGR00912 150 ILFILVLILLAPKLGNIKNLLP-----VLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKK--IKKSIIKA 218 (359)
T ss_pred HHHHHHHHHHhcccccHHHccC-----ccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhh--hHHHHHHH
Confidence 33 1222221121111111111 22335556666554 7889999999988888888 77654 56999999
Q ss_pred HHHHHHHHHhHHhHHHhhcCCCchhH----H---hhCCCCchH---HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhh
Q 036096 266 YLLVAFCYFPVAMVGYWAFGNQVEDN----V---LMSLEKPRW---LIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVK 335 (440)
Q Consensus 266 ~~~~~~~y~~~g~~gy~~fg~~~~~~----i---l~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 335 (440)
..++.++|...-+.....+|.+..++ . .....-.+. ...+.-..-......+.-...+.....+.+.++.
T Consensus 219 ~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~ 298 (359)
T TIGR00912 219 IIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKK 298 (359)
T ss_pred HHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999888888888543321 1 111111111 1122223334555666666777788888888765
Q ss_pred hcCCCcchhhhhhhHHHHHHHHHHHHhhccc-hhHHHHHhh---hhhhhhHHHHHHHHHHHHHh
Q 036096 336 KLHFKPTMILRFLTRTIYVGFTMFIAMTFPF-FGGLLSFFG---GLAFAPTTYYIPCIIWLAIY 395 (440)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~l~G---~~~~~~l~~ilP~l~~~~~~ 395 (440)
++++ ....-.+. ..+.++. .|| .+. ..... ...+....+++|.++.+...
T Consensus 299 ~~~~------~~~~~~~~--~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~P~ll~~i~~ 352 (359)
T TIGR00912 299 RKYS------ILILPVLM--VIFSISF-FPDSSNQ-LFDYLEFLPIIAIVFFLLLPLILFIIVK 352 (359)
T ss_pred CCcc------hhHHHHHH--HHHHHHH-ccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4221 12222222 2233332 444 332 22221 23334667788988776654
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.64 E-value=1.1e-12 Score=132.50 Aligned_cols=360 Identities=16% Similarity=0.206 Sum_probs=216.8
Q ss_pred cccccCCchhh-HHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHH
Q 036096 24 ITKSRNAKWWY-SAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQH 102 (440)
Q Consensus 24 ~~~~~~~s~~~-~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~ 102 (440)
++.+|+.+.++ ......++++|.|++.+|......+ ....+..++.+++.......+.|.....|+.+ .+.+..++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--G~y~~~~~ 84 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG--GAYAYAKR 84 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--Ceeeehhh
Confidence 34467777777 8999999999999999998877665 22333355566666666778888776666655 67788999
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHH--HHHHHHHhcCCCcchhhHHHH
Q 036096 103 AFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIF--ASVHFVLSHLPSFNSVAVVSL 180 (440)
Q Consensus 103 ~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~i~~pl~~~~~l~~l~~~s~ 180 (440)
.+||+.| +++.+..++.......+........+..+.+... ........+..+. ....+-+...+..+..+.++.
T Consensus 85 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~ 161 (466)
T COG0531 85 ALGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--LLSIGPLLIILIALALIALLTLLNLRGIKASAKINS 161 (466)
T ss_pred hcCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999888 8888888888888888888888876666665311 0001101222222 222233334567777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchh
Q 036096 181 AAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWK 260 (440)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~ 260 (440)
+.....+..+++..+.........+................+..++....++|.|.+...+..+|+ |||+| +.+|
T Consensus 162 ~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r-~ip~ 236 (466)
T COG0531 162 IITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPKR-TIPR 236 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCccc-cccH
Confidence 777766554444444434333322111111001122344578899999999999999999999999 89977 5889
Q ss_pred hhhHHHHHHHHHHHhHHhHHHhhcCCC-ch-----hH---HhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Q 036096 261 GVVIAYLLVAFCYFPVAMVGYWAFGNQ-VE-----DN---VLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEA 331 (440)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy~~fg~~-~~-----~~---il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 331 (440)
++..+...+.++|.+....-....+++ .. .+ ...... ..+...+......++...+.........+....
T Consensus 237 aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~ 315 (466)
T COG0531 237 AIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGG-GNWGAIIIAILALLSLFGSLLAWILAVSRVLYA 315 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888766665542 11 11 111111 134445555555666665554444333333333
Q ss_pred HHhhh--------cCCCcchhhhhhhHHHHHHHHHHHHhh--ccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcC
Q 036096 332 FLVKK--------LHFKPTMILRFLTRTIYVGFTMFIAMT--FPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKP 397 (440)
Q Consensus 332 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ia~~--~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~ 397 (440)
.-+++ .|++.+.+.+......++...+.+... ...++.+.++ +.....+.|.++.+..++.+++
T Consensus 316 ~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~--~~~~~~~~y~~~~~~~~~~~~~ 389 (466)
T COG0531 316 MARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSL--ASVAFLIAYLLVALALLVLRRK 389 (466)
T ss_pred HHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 22211 122222344443333333331111111 1124444444 3445678888998888887765
No 44
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.60 E-value=2.7e-12 Score=124.92 Aligned_cols=353 Identities=14% Similarity=0.162 Sum_probs=236.2
Q ss_pred ccccCCchhhHHHHHhhhhhcchh-cchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGV-LGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHA 103 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 103 (440)
+.+|+.+.++-.|+-++..||+|. ++.-.+.+++|-...++..++++.+.++.+..+.|.+...|..+ +|..++.+.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG--sF~~ya~rf 118 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG--SFSTYATRF 118 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhhhhh
Confidence 467999999999999999999996 66889999999876777789999999999999999888788544 799999999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhc--CCCcchhh-HHHH
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSH--LPSFNSVA-VVSL 180 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~~l~-~~s~ 180 (440)
.+|-+| +.+.+.+++.-......-++..+..++.+.+. ..+...|..++.++++.+-+ .|.....- ++|.
T Consensus 119 vdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 119 VDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWFPD------TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred cCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------CCChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 999899 88899999888888888888777766666533 24667888887777766544 34444443 4444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC-----ccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCC
Q 036096 181 AAAVMSISYSVIAWVACLHKGALPN-----VDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSK 255 (440)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~ 255 (440)
+-++..+.++++.++.. .|..++ .++..+....++++.++...+-+..|||.|.+.+---..|- +||+|
T Consensus 192 iKV~~ii~Fii~gii~~--~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~nP~K 265 (541)
T COG0833 192 IKVLTIIGFIILGIIII--CGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----ENPRK 265 (541)
T ss_pred HHHHHHHHHHHHHHHHh--cCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeeccc----CCchh
Confidence 44443332222222221 122222 11111122345678899999999999999999999989998 99988
Q ss_pred CCchhhhhHHHHHHHHHHHhHHhHHH--hhcCC----------CchhHHhhCCCC--chHHHHHHHHHHHHHHHHhhccc
Q 036096 256 KPMWKGVVIAYLLVAFCYFPVAMVGY--WAFGN----------QVEDNVLMSLEK--PRWLIAAANLFVVVHVIGSYQVY 321 (440)
Q Consensus 256 ~~~~~~~~~s~~~~~~~y~~~g~~gy--~~fg~----------~~~~~il~~~~~--~~~~~~~~~~~~~~~~~~~~p~~ 321 (440)
.+||++.-...=..++|++.-++-- ..+.| ...++....+.+ -..+..+.+...+.+++++----
T Consensus 266 -~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~ 344 (541)
T COG0833 266 -SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSG 344 (541)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhcc
Confidence 7999998888888888876644422 22322 011233222221 13455677778888888877777
Q ss_pred cccHHHHHHHHHhhhcC-------CCcchhhhh-hhHHHHHHHHHHHHhhccc---hhHHHHHhhhhhhhhHHHHHHHHH
Q 036096 322 AMPVFDMLEAFLVKKLH-------FKPTMILRF-LTRTIYVGFTMFIAMTFPF---FGGLLSFFGGLAFAPTTYYIPCII 390 (440)
Q Consensus 322 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~ia~~~p~---~~~i~~l~G~~~~~~l~~ilP~l~ 390 (440)
++...+++..+-+++.- .+..++... .++.++-+++++-+.. +. ++-++++.|. +..+.++--++.
T Consensus 345 lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~-~~~~vf~wL~~isg~--s~~i~W~~I~~s 421 (541)
T COG0833 345 LYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSF-KETTVFNWLLNISGL--SGFIAWGSICLS 421 (541)
T ss_pred chHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 88888888777654421 122333443 4444444444444444 32 3445555442 345666777778
Q ss_pred HHHHhc
Q 036096 391 WLAIYK 396 (440)
Q Consensus 391 ~~~~~~ 396 (440)
+++.||
T Consensus 422 hirFR~ 427 (541)
T COG0833 422 HIRFRR 427 (541)
T ss_pred HHHHHH
Confidence 887754
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.55 E-value=9e-11 Score=118.52 Aligned_cols=252 Identities=10% Similarity=0.004 Sum_probs=151.7
Q ss_pred ccccCCchhhHHHHHhhhh-hcchhcchHHH-HhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAM-VGAGVLGLPYA-MSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQH 102 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~-iG~GiL~lP~a-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~ 102 (440)
+.+|+.+.++....-++.+ +|+|+..++.. ....|- ..+...++.++........+.|...+.|..+ .....+++
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aG--G~Y~~~~~ 86 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISG--AIYQWSRR 86 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CHHHHHHH
Confidence 4578899999999988875 89999888755 556664 4455577788888888889999887787655 67788999
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhh--CCCCCCcc---c--hhhHHH-HHHHHHHHhcCCCcch
Q 036096 103 AFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTV--CPSCKDIR---L--TYFIMI-FASVHFVLSHLPSFNS 174 (440)
Q Consensus 103 ~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~--~~~~~~~~---~--~~~~~i-~~~i~~pl~~~~~l~~ 174 (440)
.+||++| +++.+..++.......+........+..+.+.. .+..+... . ..+.+. ..+++.-+...+..|.
T Consensus 87 ~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~ 165 (475)
T TIGR03428 87 MGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEW 165 (475)
T ss_pred HcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999888 777777776555444443333333333332111 00011110 1 111111 1122222233456666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cccCCCCccccc-hhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCC
Q 036096 175 VAVVSLAAAVMSISYSVIAWVACLHKGALPNV-DYGLRASKTTGN-VFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEK 252 (440)
Q Consensus 175 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~ 252 (440)
...++.+..+..+..++++++......+.++. ...........+ ...+..+.....|+|.|.+.+....+|+ ||
T Consensus 166 ~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~----kn 241 (475)
T TIGR03428 166 MSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET----KN 241 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh----cC
Confidence 77777666654443333322222222221110 000000011112 2345566777889999999999999999 99
Q ss_pred CCCCCchhhhhHHHHHHHHHHHhHHhHHHhhcC
Q 036096 253 PSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFG 285 (440)
Q Consensus 253 p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg 285 (440)
|+| +.||++..+..+..++|.+.-+......+
T Consensus 242 P~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 242 PRR-VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred cch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 987 89999999999888766665544443333
No 46
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.55 E-value=6.7e-13 Score=133.25 Aligned_cols=363 Identities=13% Similarity=0.081 Sum_probs=225.4
Q ss_pred cccccCCchhhHHHHHhhhhhcchhcc-hHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCc-ccccHHHHHH
Q 036096 24 ITKSRNAKWWYSAFHNVTAMVGAGVLG-LPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGK-RFDRYYELGQ 101 (440)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~-lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~-~~~~y~~~~~ 101 (440)
.+.+|+++.++-.+.-+++++|+|++- ...+.++.|-..-++..++.+...+.++..+.|...+.|.. + ++..+++
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG--s~~~ya~ 103 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG--SFYTYAY 103 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc--cceeeee
Confidence 456899999999999999999999865 56778888866555557888899999999999998888863 3 6777788
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhh--hhCCCCCCccchhhHHHH--HHHHHHHhcCC---Ccch
Q 036096 102 HAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHD--TVCPSCKDIRLTYFIMIF--ASVHFVLSHLP---SFNS 174 (440)
Q Consensus 102 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~--~~i~~pl~~~~---~l~~ 174 (440)
+..|+-+| +.+.+-+++.....+.+-+...+.+++.+.. ......+..+...|..++ .++++.+...+ +.+.
T Consensus 104 ~~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 104 RFVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eeeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 99999899 8899999999998888888999988888760 000010122223332221 12222222233 3333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---cc-ccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCC
Q 036096 175 VAVVSLAAAVMSISYSVIAWVACLHKGALPN---VD-YGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTP 250 (440)
Q Consensus 175 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~ 250 (440)
......+-+...++++.+++.......+..+ .+ +..+..-.+.++.++.+.+.+..|+|.|.+.+-...+|-
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~---- 258 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA---- 258 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc----
Confidence 3333332222222222222222222211101 01 010111223347889999999999999999999999999
Q ss_pred CCCCCCCchhhhhHHHHHHHHHHHhHHhHHHhh--cCC-Cchh------HH--hhCCCCchHHHHHHHHHHHHHHHHhhc
Q 036096 251 EKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWA--FGN-QVED------NV--LMSLEKPRWLIAAANLFVVVHVIGSYQ 319 (440)
Q Consensus 251 ~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~--fg~-~~~~------~i--l~~~~~~~~~~~~~~~~~~~~~~~~~p 319 (440)
|||+| ..|+++..++..++.+|.+..+.--+. +.+ +..+ +. -.+.....++-.+++.+.++.+.++-.
T Consensus 259 kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n 337 (554)
T KOG1286|consen 259 KNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLN 337 (554)
T ss_pred cCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHH
Confidence 99987 799999999999999999988774332 222 1111 11 111112223334778888888888888
Q ss_pred cccccHHHHHHHHHhhhcC-----CCcchhhhhhhHHHHHHHHHHHHhhccc-----hhHHHHHhhhhhhhhHHHHHHHH
Q 036096 320 VYAMPVFDMLEAFLVKKLH-----FKPTMILRFLTRTIYVGFTMFIAMTFPF-----FGGLLSFFGGLAFAPTTYYIPCI 389 (440)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ia~~~p~-----~~~i~~l~G~~~~~~l~~ilP~l 389 (440)
..+++..+.+..+.++..- +-.++-+.+....+..+...+.++.... ++.++++.|- ++.+.+..=++
T Consensus 338 ~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~ 415 (554)
T KOG1286|consen 338 SSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSI--GTLFAWTLVAL 415 (554)
T ss_pred HHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhH--HHHHHHHHHHH
Confidence 8888888887776544320 0001112223333333344444444332 4677777553 35566666667
Q ss_pred HHHHHhc
Q 036096 390 IWLAIYK 396 (440)
Q Consensus 390 ~~~~~~~ 396 (440)
++++.|+
T Consensus 416 ~~i~~R~ 422 (554)
T KOG1286|consen 416 SHLRFRY 422 (554)
T ss_pred HHeeeee
Confidence 7776654
No 47
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.50 E-value=1.7e-10 Score=116.58 Aligned_cols=352 Identities=14% Similarity=0.106 Sum_probs=169.6
Q ss_pred CCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHH-HHHHHHHHhhhccCCcccccHHHHHHHHhccc
Q 036096 29 NAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITL-YTLWQMVEMHEMVPGKRFDRYYELGQHAFGEK 107 (440)
Q Consensus 29 ~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~ 107 (440)
|.+.++-++..+.+++ ++..+|.+ ++.|.. +++..++.+++.. -......|.....|+++ ......++.+|++
T Consensus 2 ~~~~~~l~~~~~~~v~--~~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~~G--G~y~~~~~a~G~~ 75 (474)
T TIGR03813 2 KLTVVTLAIMNITAVV--SLRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPEKG--GVFRWVGEAFGAR 75 (474)
T ss_pred cccHHHHHHHHHHHHH--HhhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CceeeHhhhcChh
Confidence 4676666666666665 55556766 567732 3333444444333 36667788777677644 6667899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCc--cchhhHHHHHHH--HHHHhcCCCcchhhHHHHHHH
Q 036096 108 LGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDI--RLTYFIMIFASV--HFVLSHLPSFNSVAVVSLAAA 183 (440)
Q Consensus 108 ~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~i--~~pl~~~~~l~~l~~~s~~~~ 183 (440)
+| +...+..++.......+-+...+..+....+... ..+.. ++.....+..++ .+-+...++.|..+.++.+..
T Consensus 76 ~g-f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~ 153 (474)
T TIGR03813 76 WG-FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEAT-VDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGG 153 (474)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99 7766666665432211111111111111111100 00111 112111111111 223344566776666665432
Q ss_pred HH-HHHHHHHHHHHHH---hcCCCCCccccCCC-CccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCc
Q 036096 184 VM-SISYSVIAWVACL---HKGALPNVDYGLRA-SKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPM 258 (440)
Q Consensus 184 ~~-~~~~~~i~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~ 258 (440)
.. .+..+++.++... ..+..+..+..+.. .+...++..+..+. ...|+|.|.+.+....+|+ |||+| +.
T Consensus 154 ~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~----knP~r-~i 227 (474)
T TIGR03813 154 IVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDV----DNPDK-NY 227 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhc----cCccc-ch
Confidence 21 1111111111111 12222111111111 11111233333333 4678999999999999999 99988 79
Q ss_pred hhhhhHHHHHHHHHHHhHHhHHHhhcCCCch---hH-------HhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHH
Q 036096 259 WKGVVIAYLLVAFCYFPVAMVGYWAFGNQVE---DN-------VLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDM 328 (440)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~---~~-------il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 328 (440)
+|++..+..++.++|.+..+.-....+++.. ++ ...... .++...+..+...++.+.+....+....+.
T Consensus 228 PrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~ 306 (474)
T TIGR03813 228 PIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAG-LSWLGPILAFALAIGVLAGVVTWVAGPSSG 306 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876654444332211 01 111111 123333444444445554444332322232
Q ss_pred HHHHHhh--------hcCCCcchhhhhhhHHHHH-HHHHHHHhhccchhHHHHHhhhh--hhhhHHHHHHHHHHHHHhc
Q 036096 329 LEAFLVK--------KLHFKPTMILRFLTRTIYV-GFTMFIAMTFPFFGGLLSFFGGL--AFAPTTYYIPCIIWLAIYK 396 (440)
Q Consensus 329 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~ia~~~p~~~~i~~l~G~~--~~~~l~~ilP~l~~~~~~~ 396 (440)
....-++ +.| +.+.+.+.+....++ .+..++....|+.+..++.+.+. ....+.|+++++..++.|+
T Consensus 307 ~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~ 384 (474)
T TIGR03813 307 MLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRY 384 (474)
T ss_pred HHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222211 112 223344433222222 22233333456655555544433 3345678888777766654
No 48
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.49 E-value=2.4e-10 Score=115.74 Aligned_cols=245 Identities=13% Similarity=0.049 Sum_probs=138.7
Q ss_pred ccccCCchhhHHHHHhhhhhc--chhcc-hHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVG--AGVLG-LPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQ 101 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG--~GiL~-lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 101 (440)
+.+|+.+.++.+...++. +| +|+.. .+.+.++.|-...+...++.+++.......+.|...+.|..+ +....++
T Consensus 9 ~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G--g~y~~~~ 85 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG--GQYFWSA 85 (482)
T ss_pred eeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc--cHHHHHH
Confidence 357889999988888874 44 56644 445677777544566678888888889999999887777655 6778888
Q ss_pred HHhccchhh---HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCC-CCccchhhHHHHH--HHHHHHhcCCCcchh
Q 036096 102 HAFGEKLGL---WIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSC-KDIRLTYFIMIFA--SVHFVLSHLPSFNSV 175 (440)
Q Consensus 102 ~~~G~~~g~---~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~--~i~~pl~~~~~l~~l 175 (440)
+.+|+++|+ +++.+..++.....+.+.....++++........+.. ...+++....+.. .+++-+...+..|..
T Consensus 86 ~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~ 165 (482)
T TIGR00907 86 KLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWL 165 (482)
T ss_pred HhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhHH
Confidence 998866553 3444545555555444444555555544432211110 0011121122221 122223333455555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCccccCCC---Cc--cccchhhHHHHHHHHHHhccCCcchHhhhhhCCC
Q 036096 176 AVVSLAAAVMSISYSVIAWVACLHKGAL--PNVDYGLRA---SK--TTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPS 248 (440)
Q Consensus 176 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~---~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 248 (440)
..++.+..+..+...+++.+.....+.. ++.+..... .. ...+...+..++....|+|.|.+......+|+
T Consensus 166 ~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~-- 243 (482)
T TIGR00907 166 PRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI-- 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc--
Confidence 5555554443332222111111111111 111111100 00 01111245566666889999999999999999
Q ss_pred CCCCCCCCCchhhhhHHHHHHHHHHHhHH
Q 036096 249 TPEKPSKKPMWKGVVIAYLLVAFCYFPVA 277 (440)
Q Consensus 249 ~~~~p~~~~~~~~~~~s~~~~~~~y~~~g 277 (440)
|||+| +++|++..+..+..+++.+..
T Consensus 244 --knP~r-~iP~Ai~~s~~i~~~~~~~~~ 269 (482)
T TIGR00907 244 --ENPEV-VGPRAIIGAVAIGIVTGFCFN 269 (482)
T ss_pred --CChhh-hcCHHHHHHHHHHHHHHHHHH
Confidence 99987 899999998887766544433
No 49
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.49 E-value=7.7e-11 Score=119.48 Aligned_cols=237 Identities=12% Similarity=0.056 Sum_probs=129.1
Q ss_pred cccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHH--HHHHHHHHhhhccC-CcccccHHHHHHH
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITL--YTLWQMVEMHEMVP-GKRFDRYYELGQH 102 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~--~s~~~l~~~~~~~~-~~~~~~y~~~~~~ 102 (440)
++|+.|.++.++..+.++. ++..+|. +++.| ++.+...+.+.+.+ -......|.....| .++ .....+++
T Consensus 2 ~~~~l~~~~~~~~~~~~v~--~~~~~~~-~a~~G--~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G--G~y~wv~~ 74 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVL--AVYEYPT-FATSG--FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG--GIFAWVSN 74 (507)
T ss_pred CCcEeeHHHHHHHHHHHHH--HHHhhHH-HHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC--Ceeeehhh
Confidence 3567898888888887775 6678884 56778 45555555555543 36777788766543 322 56677999
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccch-hhHHH-HHHHHHHHhcCCCcchhhHHHH
Q 036096 103 AFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLT-YFIMI-FASVHFVLSHLPSFNSVAVVSL 180 (440)
Q Consensus 103 ~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~i-~~~i~~pl~~~~~l~~l~~~s~ 180 (440)
++|+++| +...+..++.......+................ ... .+.. .+.+. ..+..+-+...+..+....++.
T Consensus 75 a~G~~~G-f~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~--~~~-~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~ 150 (507)
T TIGR00910 75 TLGERFG-FAAIFFGWFQIAIGFIPMIYFILGALSYILKFP--ALN-EDPIIKFIAALIIFWALAFSQFGGTKRTAKIAK 150 (507)
T ss_pred ccCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--hhc-cCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999 566666666544322222211111122221110 000 1111 11111 1122233334556666666665
Q ss_pred HHHHHHHHH-HHHHH---HHHHhcCCCCCccccCCCC-ccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCC
Q 036096 181 AAAVMSISY-SVIAW---VACLHKGALPNVDYGLRAS-KTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSK 255 (440)
Q Consensus 181 ~~~~~~~~~-~~i~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~ 255 (440)
++.+..+.. .++++ ......+.+.+.+.+.... +...+ .+....+...+|+|.|.+......+|+ |||+|
T Consensus 151 i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~faf~G~E~~a~~a~E~----knP~r 225 (507)
T TIGR00910 151 AGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSK-VGTLVVFVAFIGAYMGVEASASHINEL----ENPGR 225 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCccc-ccHHHHHHHHHHHHhcHHHHHHHHHHc----cCCcc
Confidence 543322111 11111 1112222221111111000 11111 123445556799999999999999999 99987
Q ss_pred CCchhhhhHHHHHHHHHHHhHHhH
Q 036096 256 KPMWKGVVIAYLLVAFCYFPVAMV 279 (440)
Q Consensus 256 ~~~~~~~~~s~~~~~~~y~~~g~~ 279 (440)
+++|++..+..++.++|.+..+.
T Consensus 226 -~~PrAi~~~~i~~~~l~~l~~~~ 248 (507)
T TIGR00910 226 -DYPLAMILLMIAAICLDAIGGFS 248 (507)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999875543
No 50
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.47 E-value=5.1e-10 Score=113.60 Aligned_cols=244 Identities=14% Similarity=0.119 Sum_probs=136.1
Q ss_pred cccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHH-HHHHHHHHHhhhccCC-cccccHHHHHHHH
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIIT-LYTLWQMVEMHEMVPG-KRFDRYYELGQHA 103 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~-~~s~~~l~~~~~~~~~-~~~~~y~~~~~~~ 103 (440)
.+|+.|+++.++..+++++|.+ .+|.++++.|.. +++..++.+++. ......+.|.....|+ ++ .-....++.
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG--G~Y~w~~~~ 79 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG--GIYSWMNKS 79 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--cHHHHHHHH
Confidence 3678999999999999999976 568888888853 444444555443 3456678887776774 33 566889999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhh-hhHHhhhhhCCC---CCCccch-hhHHHHHH--HHHHHhcCCCcchhh
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQ-CLKKFHDTVCPS---CKDIRLT-YFIMIFAS--VHFVLSHLPSFNSVA 176 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~-~~~~~~~~~~~~---~~~~~~~-~~~~i~~~--i~~pl~~~~~l~~l~ 176 (440)
+||++| ++..+..+................ ....++.....+ ....+.. ...++..+ +++-....|..+..+
T Consensus 80 ~G~~~g-f~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~ 158 (496)
T PRK15238 80 VGPKFA-FIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIA 158 (496)
T ss_pred cCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 999999 444333333222211111100000 000001100000 0001111 11111111 123334467788888
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHhcCCCC--Cccc-cC-CC-CccccchhhHHHHHHHHHHhccCCcchHhhhhhCC
Q 036096 177 VVSLAAAVMSISY----SVIAWVACLHKGALP--NVDY-GL-RA-SKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIP 247 (440)
Q Consensus 177 ~~s~~~~~~~~~~----~~i~~~~~~~~~~~~--~~~~-~~-~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 247 (440)
.++.++....+.. +++........+... +... ++ +. .+...+..++..++....|+|.|.+.+....+|+
T Consensus 159 ~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~- 237 (496)
T PRK15238 159 KVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKT- 237 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhc-
Confidence 8877655433221 111111111112111 1100 00 00 0111112357778888999999999999999999
Q ss_pred CCCCCCCCCCchhhhhHHHHHHHHHHHhHHhHH
Q 036096 248 STPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVG 280 (440)
Q Consensus 248 ~~~~~p~~~~~~~~~~~s~~~~~~~y~~~g~~g 280 (440)
|||+| +.+|++..+...+.++|.+..++.
T Consensus 238 ---~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 238 ---ENPEK-NFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred ---cCCCc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 799999999999999999875544
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.40 E-value=1.3e-10 Score=111.28 Aligned_cols=284 Identities=16% Similarity=0.198 Sum_probs=185.4
Q ss_pred CCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccch
Q 036096 29 NAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKL 108 (440)
Q Consensus 29 ~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~ 108 (440)
|.|..|....+..+++|+|++.+|....+.+- .+++..++.+........+..+..+++|++ +..|+.++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~---~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK---TLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhCcHH
Confidence 57889999999999999999999998665552 677777777777777888888877777765 89999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhH-HHHHHHHHHHhcCCCcchhhHHHHHHHHHHH
Q 036096 109 GLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFI-MIFASVHFVLSHLPSFNSVAVVSLAAAVMSI 187 (440)
Q Consensus 109 g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 187 (440)
| ........++.+..........++.++...-. +.+.+. ....+++.-....++++.+...+.+.....+
T Consensus 77 g-~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp--------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~ 147 (320)
T PF03845_consen 77 G-KIINLLYILYFLLISALVLREFSEFIKTYLLP--------ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFL 147 (320)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8 55566666655555555554555544443211 112232 2233333444456788888886666665444
Q ss_pred HHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHHHH
Q 036096 188 SYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYL 267 (440)
Q Consensus 188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~ 267 (440)
...+.+......+. |++.-.+..+.++.++..+.....+.|.+.....-+...+ |||+|. .|....+..
T Consensus 148 i~~~~i~~~~~~~~-----~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~~--~k~~~~~~~ 216 (320)
T PF03845_consen 148 ILLLLILLLSIPNI-----DWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKKL--KKSLLIAIL 216 (320)
T ss_pred HHHHHHHHHhcccC-----CHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchHH--HHHHHHHHH
Confidence 33333333333222 2222122335577888888888889999988888888888 777654 489999999
Q ss_pred HHHHHHHhHHhHHHhhcCCCchh----HHh---hCCCCc---hHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhh
Q 036096 268 LVAFCYFPVAMVGYWAFGNQVED----NVL---MSLEKP---RWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKK 336 (440)
Q Consensus 268 ~~~~~y~~~g~~gy~~fg~~~~~----~il---~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 336 (440)
.+..+|...-+.....||.+..+ +.. ...+-+ +-.....-..-........-...+...+.+.+.++.+
T Consensus 217 ~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 217 ISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999888888889864322 111 111101 1111222233345555666667777888888887644
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.29 E-value=2e-11 Score=123.42 Aligned_cols=238 Identities=17% Similarity=0.269 Sum_probs=150.9
Q ss_pred HHHhhhhhcchhcc-hHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccchhhHHHHH
Q 036096 37 FHNVTAMVGAGVLG-LPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVP 115 (440)
Q Consensus 37 ~~l~~~~iG~GiL~-lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~~ 115 (440)
+..+++++|+|.+. .+.+..+.|....++..++.+++.......+.|...+.|..+ ++.+++++.+||+.| ..+.+
T Consensus 4 ~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G--g~y~y~~~~lg~~~G-f~~gw 80 (478)
T PF00324_consen 4 MISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG--GFYAYASRGLGPALG-FAAGW 80 (478)
T ss_pred EeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc--chhhhhhhccCCcCC-ceeeH
Confidence 44577889999754 677888888766677788889999999999999887777544 788889999999999 77777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhh----HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHH
Q 036096 116 QQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYF----IMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSV 191 (440)
Q Consensus 116 ~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 191 (440)
..++.............+..++.. +. ..+.+ ..+.| ..++.+++..+. ....+..+.+......+.+..++
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~--~~~~~~~~~~~i~~~~~~~l~-~~gv~~~~~~~~~~~~i~~~~li 155 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFW-GY-FPGLP--STWVWGILIAIIFILLITLLN-LFGVRVSGKIEFILTIIKLIALI 155 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccc-cc-ccccc--ccccccchhhhhhhhhhhhhh-hhhhhccchHHHHHHHHhhhHhh
Confidence 777766666666555555444433 10 11111 01222 233333333322 33444444433333333322222
Q ss_pred HHHHHH-H--hcCCCCCcc--cc--------CCC---CccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCC
Q 036096 192 IAWVAC-L--HKGALPNVD--YG--------LRA---SKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSK 255 (440)
Q Consensus 192 i~~~~~-~--~~~~~~~~~--~~--------~~~---~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~ 255 (440)
..++.. + ..+..+..+ .. .+. .+...++.++..++...+++|.|.+.+....+|. |||+|
T Consensus 156 ~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k 231 (478)
T PF00324_consen 156 AFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRK 231 (478)
T ss_pred hhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccC----CCchh
Confidence 222222 1 111111111 00 000 1112247789999999999999999999999999 99988
Q ss_pred CCchhhhhHHHHHHHHHHHhHHhHHHhhcCCC
Q 036096 256 KPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQ 287 (440)
Q Consensus 256 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~ 287 (440)
+++|++..+.....++|.+.....-...+.+
T Consensus 232 -~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 232 -TIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred -hhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 7999999999999999999877766555543
No 53
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.00 E-value=4.3e-07 Score=88.92 Aligned_cols=254 Identities=11% Similarity=0.074 Sum_probs=137.7
Q ss_pred ccccCCchhhHHH---HHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHH
Q 036096 25 TKSRNAKWWYSAF---HNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQ 101 (440)
Q Consensus 25 ~~~~~~s~~~~~~---~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 101 (440)
+-+|.-++++... .+++..-|.- -++.+.+...|-..-.-.+++.+.++.....-+.|.+...|..+ +..-.+.
T Consensus 45 ef~R~fs~~s~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsG--gLy~waa 121 (550)
T KOG1289|consen 45 ELKREFSLFSIFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSG--GLYFWAA 121 (550)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCC--cHHHHHH
Confidence 3456666544333 2222222211 23445555455443333477788888889999999777677433 4444455
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCC--CccchhhHHHHHHHHHHHhc--CCCcchhhH
Q 036096 102 HAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCK--DIRLTYFIMIFASVHFVLSH--LPSFNSVAV 177 (440)
Q Consensus 102 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~i~~pl~~--~~~l~~l~~ 177 (440)
..-+||+++...++.-+...++............-+.++....-.++ ..+++....+...+.+..++ ...-+.+++
T Consensus 122 ~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~ 201 (550)
T KOG1289|consen 122 VLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLAR 201 (550)
T ss_pred HhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHH
Confidence 55688888777777666666655444333322222222221111111 12222222333333332222 223466677
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCC----CCCcc-c-cC-CCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCC
Q 036096 178 VSLAAAVMSISYSVIAWVACL-HKGA----LPNVD-Y-GL-RASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPST 249 (440)
Q Consensus 178 ~s~~~~~~~~~~~~i~~~~~~-~~~~----~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~ 249 (440)
++.+++...+...++..+... .... +.+.. . ++ +...+.++-..+.-++-...+.+.|-+...++.+|-
T Consensus 202 I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~--- 278 (550)
T KOG1289|consen 202 INSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEET--- 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHh---
Confidence 777776654433333333222 1111 11110 0 01 111222233456666777889999999999999999
Q ss_pred CCCCCCCCchhhhhHHHHHHHHHHHhHHhHHHhhcCC
Q 036096 250 PEKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGN 286 (440)
Q Consensus 250 ~~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~ 286 (440)
|||+| +.+|++..+..+..++=..+-+.-....++
T Consensus 279 -~nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 279 -KNASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred -cchhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99988 789999988888888777666655555654
No 54
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.86 E-value=7.7e-06 Score=81.85 Aligned_cols=298 Identities=13% Similarity=0.075 Sum_probs=157.9
Q ss_pred ccCCchhhHHHHHhhhhhcchhcchHHHHhhhC--chHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHh
Q 036096 27 SRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIG--WGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAF 104 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 104 (440)
+|+.++++-...-.+..+....+.+.......| +.-+++..++..++...-..+......++ ..++..+.|..|
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~----Gl~~~v~sR~~F 86 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKY----GLPFPVLSRASF 86 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHh----CCCcchhhhhhh
Confidence 445566666666666655554444444333333 33344444443333333333333333322 236788899999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCcc------chhhHHHHHHHHHHHhcCCCcchhhHH
Q 036096 105 GEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIR------LTYFIMIFASVHFVLSHLPSFNSVAVV 178 (440)
Q Consensus 105 G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~i~~pl~~~~~l~~l~~~ 178 (440)
|.+ |..+..+...+...+.........++.+.++++...+.....+ .....+++..+..++......+..+..
T Consensus 87 G~~-Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~ 165 (442)
T TIGR00800 87 GIY-GSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLF 165 (442)
T ss_pred hhh-HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 975 5588899999999999999999999988888877554211111 122233444555555556555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccC-CcchHhhhhhCCCCCCCCCCCC
Q 036096 179 SLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAG-HNVVLEIQASIPSTPEKPSKKP 257 (440)
Q Consensus 179 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~-~~~~~~i~~~m~~~~~~p~~~~ 257 (440)
...+....+....+........+...+..........+.....+..+++..+-.+.. -.+.++..+.+ |+|++..
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~----~~~~~~~ 241 (442)
T TIGR00800 166 EWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFG----KSKKTAI 241 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhc----CCccchH
Confidence 555554333222222222222221111110111112233345666666664433333 46788999988 5555533
Q ss_pred chhhhhHHHHHHHHHHHhHHhHHHhh----cCCCchh--HHhhCCCCchHHHH-----HHHHHH-HHHHHHhhccccccH
Q 036096 258 MWKGVVIAYLLVAFCYFPVAMVGYWA----FGNQVED--NVLMSLEKPRWLIA-----AANLFV-VVHVIGSYQVYAMPV 325 (440)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~~gy~~----fg~~~~~--~il~~~~~~~~~~~-----~~~~~~-~~~~~~~~p~~~~~~ 325 (440)
+....++.........+|..+-.. +|+...+ +....+....+... ..+++. ...+.++.-...++.
T Consensus 242 --~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~ 319 (442)
T TIGR00800 242 --WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSA 319 (442)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 567778888888888888887665 7654333 33444332111111 111222 222224555666777
Q ss_pred HHHHHHHHhh
Q 036096 326 FDMLEAFLVK 335 (440)
Q Consensus 326 ~~~~~~~~~~ 335 (440)
...+.+.+++
T Consensus 320 ~l~l~~l~~~ 329 (442)
T TIGR00800 320 GLDIAALLPK 329 (442)
T ss_pred HHHHHHhCcC
Confidence 7776666643
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.79 E-value=1.1e-05 Score=74.20 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=94.6
Q ss_pred hHHHHHhhhhhcchhcc---hHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccchhh
Q 036096 34 YSAFHNVTAMVGAGVLG---LPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGL 110 (440)
Q Consensus 34 ~~~~~l~~~~iG~GiL~---lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~ 110 (440)
+-.+..+++++|+|.=+ +=+-|..-|+. |....++.+++-..++....+...+.+ ..+|.|..++.+||+++
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~---a~~y~~~~~~v~~~~~~- 81 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN---ATSYREILKYVSGPKFA- 81 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHhhHHHH-
Confidence 44566778999999433 22335566765 666667777777777777777665443 33899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 036096 111 WIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMS 186 (440)
Q Consensus 111 ~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 186 (440)
.+.|+.+.+..++.++...--.++.+++.++ ++.+.-.++....+....+.++.+.+-.+..+-+-..
T Consensus 82 ki~d~~iif~lf~~~vVM~AGags~~~e~~~--------lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~L 149 (349)
T COG3949 82 KIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG--------LPYWIGALIIILLVLILLFLGRVEGIITVNGIITPFL 149 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHhC--------ccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHH
Confidence 7789999999999998777666666666543 2233333444455555555666777666665555433
No 56
>PRK11375 allantoin permease; Provisional
Probab=98.67 E-value=0.00013 Score=73.50 Aligned_cols=299 Identities=10% Similarity=0.019 Sum_probs=148.9
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHHH-H-hhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPYA-M-SEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQH 102 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~-~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~ 102 (440)
+++|+.++++-...-.+..+..+.+.+-.+ . ...++..+++..++..++...-+.+..+...++ ..++.-+.|.
T Consensus 22 ~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~----Gl~~~v~sR~ 97 (484)
T PRK11375 22 QSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKY----GVPFAMILRA 97 (484)
T ss_pred ccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhccccccc----CCChhHhHHH
Confidence 345656666655555544443333221111 1 122334444444444444433333333333322 3378899999
Q ss_pred HhccchhhHHHHHHHH-HHHHHHHHHHHHHhhhhhHHhhhhhCCCCC---------Cccchhh--HHHHHHHHHHHhcCC
Q 036096 103 AFGEKLGLWIIVPQQL-LVEVGVDIMYMLTGGQCLKKFHDTVCPSCK---------DIRLTYF--IMIFASVHFVLSHLP 170 (440)
Q Consensus 103 ~~G~~~g~~~~~~~~~-~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~i~~~i~~pl~~~~ 170 (440)
.||.+ |-.+..+... +..++.........++.+..+++...+... ..+...+ .+++.++..++. ..
T Consensus 98 sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~-~~ 175 (484)
T PRK11375 98 SYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG-FG 175 (484)
T ss_pred HHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH-Hc
Confidence 99986 5466666664 466666666667777777766655432100 1111112 223444455554 34
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-ccccCC-CCccccchhhHHHHHHHHHHhcc-CCcchHhhhhhCC
Q 036096 171 SFNSVAVVSLAAAVMSISYSVIAWVACLHKGALPN-VDYGLR-ASKTTGNVFNFFSALGDVAFAFA-GHNVVLEIQASIP 247 (440)
Q Consensus 171 ~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~ 247 (440)
..+.++.++.++..+.....+...+..+......+ .+.... ..........+..++...+-++. .-.+.|...+..
T Consensus 176 g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~- 254 (484)
T PRK11375 176 GGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNA- 254 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhccc-
Confidence 67777777777766543333322223332221111 111100 00111123345555544444554 345788888887
Q ss_pred CCCCCCCCCCchhhhhHHHHHHHHHHHhHHhHH----HhhcCCCchh--HHhhCCCCchHHHHHHHHHHHHHHHHhh-cc
Q 036096 248 STPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVG----YWAFGNQVED--NVLMSLEKPRWLIAAANLFVVVHVIGSY-QV 320 (440)
Q Consensus 248 ~~~~~p~~~~~~~~~~~s~~~~~~~y~~~g~~g----y~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~~~-p~ 320 (440)
|++++.. +...++..+...+...+|+.. ...+|+...+ +++..+.. .......-+...++..++- ..
T Consensus 255 ---k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~-~~~~~~a~l~~v~a~~~tN~~~ 328 (484)
T PRK11375 255 ---HSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS-LFASFFAVLVILMTTISTNATG 328 (484)
T ss_pred ---CChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHh
Confidence 6665533 455566766666665555443 3456654333 44444422 2333334444555555553 45
Q ss_pred ccccHHHHHHHHHhhh
Q 036096 321 YAMPVFDMLEAFLVKK 336 (440)
Q Consensus 321 ~~~~~~~~~~~~~~~~ 336 (440)
..++.-..+.+.+.++
T Consensus 329 N~ys~~~~l~~l~pk~ 344 (484)
T PRK11375 329 NIIPAGYQIAALAPTK 344 (484)
T ss_pred hcccHHHHHHHhCcCc
Confidence 7788877777777644
No 57
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.64 E-value=3.4e-07 Score=77.70 Aligned_cols=208 Identities=14% Similarity=0.206 Sum_probs=131.9
Q ss_pred hhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhc------------cC--C-cc-----
Q 036096 33 WYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEM------------VP--G-KR----- 92 (440)
Q Consensus 33 ~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~------------~~--~-~~----- 92 (440)
.-....+.|-++|+|-|++|.+|+.+||.+++.++.+.+++++.+..+.+|+... .+ . +.
T Consensus 15 ~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stas 94 (319)
T KOG3832|consen 15 TVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTAS 94 (319)
T ss_pred hhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccC
Confidence 4457788999999999999999999999999999999999999988887774210 00 0 00
Q ss_pred ----------------------------------cccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 036096 93 ----------------------------------FDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKK 138 (440)
Q Consensus 93 ----------------------------------~~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~ 138 (440)
+....|++...|.| .|..+.-++++++.+|-...|...+-....+
T Consensus 95 d~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~m~ 173 (319)
T KOG3832|consen 95 DDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSAMN 173 (319)
T ss_pred CCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHhhh
Confidence 01256777777885 7878888999999999999998877766666
Q ss_pred hhhhhCC---------CCC-C--------cc----chhhHHHHHHH-HHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 036096 139 FHDTVCP---------SCK-D--------IR----LTYFIMIFASV-HFVLSHLPSFNSVAVVSLAAAVMSISYSVIAWV 195 (440)
Q Consensus 139 ~~~~~~~---------~~~-~--------~~----~~~~~~i~~~i-~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 195 (440)
+.....+ +|. + ++ +++++.++.++ .+|+.+. ++++-+.+++.-.++--+-.+..+.
T Consensus 174 itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~ 252 (319)
T KOG3832|consen 174 ITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGIS 252 (319)
T ss_pred hhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhh
Confidence 6544332 111 1 11 22334444433 3465544 5666666666555432211111111
Q ss_pred HHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhC
Q 036096 196 ACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASI 246 (440)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 246 (440)
..-.+- .++-.+. .++...+-++-..++..+|+|.+|.+.|.....+
T Consensus 253 l~tmqa-eedaa~a---~p~arc~cgfgkl~~~aly~~~a~cmapda~gag 299 (319)
T KOG3832|consen 253 LATMQA-EEDAAAA---HPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAG 299 (319)
T ss_pred hhhhhh-ccccccc---CCccccccccccccchhhHHHHhhccCCCCCCCC
Confidence 111111 1111111 2223344556677888999999999999988876
No 58
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.61 E-value=0.00036 Score=70.55 Aligned_cols=154 Identities=13% Similarity=0.197 Sum_probs=100.3
Q ss_pred cccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHH-HHHHHHHHHHH----HhhhccCCcccccHHHH
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSW-IITLYTLWQMV----EMHEMVPGKRFDRYYEL 99 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~-~~~~~s~~~l~----~~~~~~~~~~~~~y~~~ 99 (440)
..|+.+++...+.+..+.+|++ .++.|....+.|+. .......+ .........+. +..++. +..|.+|+
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~T~~e~ 112 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLG--WVLLAMIQVPTGYFVLGVLGKKFAIISRKY---NAITINDV 112 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccHHHH
Confidence 3678999999999999999886 57889877777853 21111111 11111212222 222222 25599999
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHH
Q 036096 100 GQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVS 179 (440)
Q Consensus 100 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 179 (440)
.++-||++..+.+..+...+..++...+.+...+..++++++ ++....+++..+++........++...+..
T Consensus 113 l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------i~~~~~iii~~~iv~iYt~~GG~~av~~td 184 (471)
T TIGR02119 113 LKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------LSYLTALFIFSSSVLIYTTFGGFRAVALTD 184 (471)
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999766667777777777777666666666666665542 344555566666677777888999999999
Q ss_pred HHHHHHHHHHHHH
Q 036096 180 LAAAVMSISYSVI 192 (440)
Q Consensus 180 ~~~~~~~~~~~~i 192 (440)
.+..+..+...++
T Consensus 185 ~iQ~~v~~~~~~~ 197 (471)
T TIGR02119 185 AIQGIVMFTGTTI 197 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 8888755543333
No 59
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.57 E-value=0.0011 Score=67.23 Aligned_cols=155 Identities=13% Similarity=0.154 Sum_probs=95.7
Q ss_pred cccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHH--HHHHHHH-HHHHHHHHHhhhccCCcccccHHHHHH
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVI--VLSWIIT-LYTLWQMVEMHEMVPGKRFDRYYELGQ 101 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l--~~~~~~~-~~s~~~l~~~~~~~~~~~~~~y~~~~~ 101 (440)
..|+.+++...+.+..+.+|++ .++.|....+.|+....... .....+. .+-...+.+..++. +..|.+|+.+
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---~~~T~~e~l~ 115 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY---NAVTLNDMLR 115 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccHHHHHH
Confidence 3678888999999988888875 67888776677753111111 0111111 11111222222322 2569999999
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHH
Q 036096 102 HAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLA 181 (440)
Q Consensus 102 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 181 (440)
+-||++..+.+..+...+..+....+.+...+..++.+++ ++....+++..+++........++...+...+
T Consensus 116 ~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------i~~~~~iii~~~iv~iYt~~GGl~av~~TD~i 187 (483)
T PRK09442 116 ARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------ISYETGLLIFGITVALYTAFGGFRAVVLTDAL 187 (483)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999766556666655555555555556666666655542 34455556666666777888899999999888
Q ss_pred HHHHHHHHHH
Q 036096 182 AAVMSISYSV 191 (440)
Q Consensus 182 ~~~~~~~~~~ 191 (440)
..++.+...+
T Consensus 188 Q~~i~~~~~~ 197 (483)
T PRK09442 188 QGIVMLVGTV 197 (483)
T ss_pred HHHHHHHHHH
Confidence 8775554433
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.53 E-value=0.00026 Score=70.13 Aligned_cols=150 Identities=16% Similarity=0.200 Sum_probs=101.5
Q ss_pred ccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhc
Q 036096 27 SRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFG 105 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 105 (440)
.|+.+++...+.+..+.+|++ .++.|....+.|+. +....+...........+..+..++. + ..|.+|+.++-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINN-G--AYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc-C--CCchhHHHHHHhC
Confidence 477888999999999888875 68899887777853 22222222222222333444433322 2 5599999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 036096 106 EKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVM 185 (440)
Q Consensus 106 ~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (440)
++..|.+..+...+..+....+.+...+..++.+++ ++....+++..++++.......++...+...+..++
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 866767777777777777777777777777766653 334445556666666777788999999998888776
Q ss_pred HHH
Q 036096 186 SIS 188 (440)
Q Consensus 186 ~~~ 188 (440)
++.
T Consensus 150 ~~~ 152 (407)
T TIGR00813 150 MIL 152 (407)
T ss_pred HHH
Confidence 544
No 61
>PRK12488 acetate permease; Provisional
Probab=98.51 E-value=0.0014 Score=67.36 Aligned_cols=151 Identities=14% Similarity=0.141 Sum_probs=99.2
Q ss_pred ccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHH-HHHHHHHhhhccCCcccccHHHHHHHHh
Q 036096 27 SRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLY-TLWQMVEMHEMVPGKRFDRYYELGQHAF 104 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~-s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 104 (440)
.|+.+++...+.+..+.++++ .++.|......|+. +... .....+.+. ...++.+-.++. +..|.+|..++-|
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~-~~g~~~g~~~~~~~~a~~lr~~---g~~T~~d~l~~Rf 140 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLY-ALGVLAGWPIILFLIAERLRNL---GKYTFADVVSYRL 140 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHH-HHHHHHHHHHHHHHHHHHHHHC---CCcchHHHHHHHc
Confidence 578899999999999988886 58899887778864 2221 111112211 122333332222 2569999999889
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096 105 GEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 105 G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
|++.-|.+..+...+..+......+...+..++.+++ ++...-+++..+++...+....++...+...+..+
T Consensus 141 ~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T PRK12488 141 AQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------ISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKAV 212 (549)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 8655667777777766666666666666666555542 34455556666777777888899999999998887
Q ss_pred HHHHHH
Q 036096 185 MSISYS 190 (440)
Q Consensus 185 ~~~~~~ 190 (440)
.++...
T Consensus 213 im~~~~ 218 (549)
T PRK12488 213 LLLSGT 218 (549)
T ss_pred HHHHHH
Confidence 655433
No 62
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.49 E-value=0.00062 Score=66.58 Aligned_cols=259 Identities=14% Similarity=0.138 Sum_probs=147.3
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhh
Q 036096 97 YELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVA 176 (440)
Q Consensus 97 ~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 176 (440)
-.+.|..||.+ |..+..+.+.+.+.|......+..++...+ .++.+.+.+.++.+++++..+.. ..+.+.
T Consensus 84 mi~sR~~fG~~-Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~--------~~~~~~~~~ili~g~l~~l~~if-G~r~l~ 153 (442)
T COG1457 84 MILSRYPFGVK-GSILPSLLNGITLIGWFGVNVILSGIAIGS--------GTGLPVWAGILIIGVLMTLVTIF-GYRALH 153 (442)
T ss_pred heeecccccch-hHHHHHHHHHHHHhhHHHHHHHHhcccccc--------CCCCcHHHHHHHHHHHHHHHHHH-hHHHHH
Confidence 46688899975 659999999999999998888888876211 13455677777777776666554 455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCC-cchHhhhhhCCCCCCCCCC
Q 036096 177 VVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGH-NVVLEIQASIPSTPEKPSK 255 (440)
Q Consensus 177 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~-~~~~~i~~~m~~~~~~p~~ 255 (440)
..+..+....+............ ..+..+..+ ...+.++.++..+++...-.+... +-..+..+.+ |+|+.
T Consensus 154 ~l~~~a~~~~~~lf~~l~~~~~~--~~~~~~~~~--~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~----~~~t~ 225 (442)
T COG1457 154 KLERIAVPLLLLLFLYLLALLFR--SKGGLDALW--VKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYA----PSPTP 225 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cccccceee--ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc----CCCch
Confidence 55555554333222222222222 111111111 222556667777777666666555 4557777777 44442
Q ss_pred CCchhhhhHHHHHHHHHHHhHHhHHHhhcCCCc-hhHHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHh
Q 036096 256 KPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQV-EDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLV 334 (440)
Q Consensus 256 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 334 (440)
++.-.....+......+-++.|.+.-.+-|+.. ..+....++. .....-+.+.++..++--..+++..-.+.+...
T Consensus 226 ~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~ 302 (442)
T COG1457 226 SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIP 302 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhh
Confidence 122244557777777777888888888888766 4555555542 233444445666666666677777666666654
Q ss_pred hhcCCCcchhhhhhhHHHHHHHHHHHHhh----ccchhHHHHHhhhhhhhhHH
Q 036096 335 KKLHFKPTMILRFLTRTIYVGFTMFIAMT----FPFFGGLLSFFGGLAFAPTT 383 (440)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~----~p~~~~i~~l~G~~~~~~l~ 383 (440)
+- ++..+.+...+. ...+++.. ..+++..+.++|........
T Consensus 303 ~l-----~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~ 348 (442)
T COG1457 303 KL-----SKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGG 348 (442)
T ss_pred hh-----hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 122333333222 23333333 44566666666655543333
No 63
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.43 E-value=0.0011 Score=64.28 Aligned_cols=315 Identities=15% Similarity=0.125 Sum_probs=144.0
Q ss_pred HHhhhhhcchhcchHHH-HhhhC--chHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccchhhHHHH
Q 036096 38 HNVTAMVGAGVLGLPYA-MSEIG--WGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIV 114 (440)
Q Consensus 38 ~l~~~~iG~GiL~lP~a-~~~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~ 114 (440)
.+..-.+|+|.|-.|-. -+++| |..+.+.+++.++..-....+ +..+.++ +|+++.++ +||+.|..+.+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~gG----~~~~l~~~-~g~~f~~lf~~ 74 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALVGG----GYDSLSAR-IGKVFGILFTV 74 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeecCC----CHHHHHHH-hChHHHHHHHH
Confidence 45566789999999855 44565 455666666666555444333 1122222 78888766 58888844433
Q ss_pred HHHHHHHHH------HHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHH
Q 036096 115 PQQLLVEVG------VDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSIS 188 (440)
Q Consensus 115 ~~~~~~~~~------~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~ 188 (440)
.......-. ...+|-.. +..+++. +..........+++..+.+.++ .|.-|-...++.+-+...+.
T Consensus 75 ~~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~---~~~~~~l~i~siiff~i~~~l~-~~~~k~~~~iGk~LTP~lLi 146 (378)
T TIGR00796 75 ILYLTIGPLFAIPRTATVSFEMG----IAPLLHS---PTSLLALFIFSLIFFAVVLLLS-LNPSKLIDRVGKFLTPALLV 146 (378)
T ss_pred HHHHHHHhchhhhHHHHHHHHHH----HHhccCc---ccchHHHHHHHHHHHHHHHHHH-cCcccHHHHhHHHHHHHHHH
Confidence 333222222 22333322 2222221 0111111222233333333334 34445555555555555555
Q ss_pred HHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhcc-------CCcchHhhhh-hCCCCCCCCCCCCchh
Q 036096 189 YSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFA-------GHNVVLEIQA-SIPSTPEKPSKKPMWK 260 (440)
Q Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-------~~~~~~~i~~-~m~~~~~~p~~~~~~~ 260 (440)
.+.++++..+.+...+...+. .+..+ -..+.+++--.-+.+. +...+-.+.+ |+ |||+| ..++
T Consensus 147 ~l~~lii~g~~~p~g~~~~~~---~~~~~-~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~----~~~~~-~~~~ 217 (378)
T TIGR00796 147 TLLALIIKALLWPAGPILAAS---GAYAS-QQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGV----TKPKK-ITKY 217 (378)
T ss_pred HHHHHHHHHHHcCCCCcCCcc---ccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCHHH-HHHH
Confidence 455445555543221111010 00000 0123333333333333 4555555555 77 77766 4455
Q ss_pred hhhH---HHHHHHHHHHhHHhHHHhhcC---CC-chhHHhhCCCC---chHHHHHHHHHHHHHHHHhhccccccHHHHHH
Q 036096 261 GVVI---AYLLVAFCYFPVAMVGYWAFG---NQ-VEDNVLMSLEK---PRWLIAAANLFVVVHVIGSYQVYAMPVFDMLE 330 (440)
Q Consensus 261 ~~~~---s~~~~~~~y~~~g~~gy~~fg---~~-~~~~il~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 330 (440)
+... +......+|.-.+..|...-+ +. ..+.++.+..+ .++...+..+.+.++.+++-.-......+.++
T Consensus 218 ~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~ 297 (378)
T TIGR00796 218 TIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFH 297 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 445555566666555544322 11 12333333211 13334455555666666655544444444444
Q ss_pred HHHhhhcCCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHH
Q 036096 331 AFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIW 391 (440)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~ 391 (440)
+... + ...........+.+..++. -.++.++++ +...+.++.|..+-
T Consensus 298 ~~~~----k----~~y~~~v~~~~l~s~~ia~--~Gl~~Ii~~----~~PvL~~~YP~~i~ 344 (378)
T TIGR00796 298 KLVP----K----LSYKTWVIVFTLFSFIVAN--LGLTQIISI----SIPVLMIIYPLAIV 344 (378)
T ss_pred HhcC----C----CCHHHHHHHHHHHHHHHHH--hCHHHHHHH----HHHHHHHHHHHHHH
Confidence 4422 1 1122222233334444443 266777775 34566667775543
No 64
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.41 E-value=0.0018 Score=63.58 Aligned_cols=251 Identities=13% Similarity=0.103 Sum_probs=138.0
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 036096 58 IGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLK 137 (440)
Q Consensus 58 ~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~ 137 (440)
.++..+++..++..++...-..+......++ ..++.-+.|..||++ |..+..+...+...+.........++.+.
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~----Gl~~~v~sR~~FG~~-Gs~~~~~l~~i~~igW~~v~~~~gg~~l~ 100 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGADT----GLSAMGSLKLSLGSK-GSVLPSLLNLLQLVGWTAVMIIVGAKAAS 100 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccc----CcCHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444444444433333333333322 237889999999975 66888888889999988888888899998
Q ss_pred HhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCcccc
Q 036096 138 KFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTG 217 (440)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (440)
.+.+...+.. +...+..+..++..+.+. ...+.++++..++..+.....+...+....+...++ ..+ . +.
T Consensus 101 ~~~~~~~~~~---~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~-~--~~ 170 (386)
T TIGR02358 101 LLGGRLFGEE---SPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSE---LWN-R--AG 170 (386)
T ss_pred HHHHHhcCCC---chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh---hcC-C--CC
Confidence 8887543221 123344444444444444 366777777777777554433333333333221111 111 1 11
Q ss_pred chhhHHHHHHHHHHhc-cCCcchHhhhhhCCCCCCCCCCCCchhhhhHHHHHHHHHHHhHHhHHHhhcCCCchhHHhhCC
Q 036096 218 NVFNFFSALGDVAFAF-AGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSL 296 (440)
Q Consensus 218 ~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~ 296 (440)
+ ..+..+++...-.+ ......++..+.. |+|+| ..+....+..+...+..++|.....+.++....++....
T Consensus 171 ~-~s~~~~~~~~~~~~~swa~~~~DysRy~----k~~~~--~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~ 243 (386)
T TIGR02358 171 D-MSFAVAVELVIAMPLSWLPLIADYTRFA----RNPRH--VFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGA 243 (386)
T ss_pred C-ccHHHHHHHHHHHHHHHHHHccchhhhc----CCCcc--eehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc
Confidence 1 22333333222111 1223467777776 55544 336677888888888888888877776654333333332
Q ss_pred CCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHh
Q 036096 297 EKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLV 334 (440)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 334 (440)
+.. ...-+...++..++-....++.-..+.+.++
T Consensus 244 ---g~~-~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~ 277 (386)
T TIGR02358 244 ---GLG-IPALLIILLSTVTTTFMDIYSAAISTGNLLP 277 (386)
T ss_pred ---cHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1222334455555556666766666666663
No 65
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.40 E-value=0.00016 Score=71.64 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=87.7
Q ss_pred ccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhc
Q 036096 27 SRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFG 105 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 105 (440)
.|+.+++...+.+..+.+|++ +++.|....+.|+.. ....+............+.+-.++. +..|.+|+.++-||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~---~~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRS---GAVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHT---T--SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhccc---chhhhhhhhhhhcC
Confidence 577889999999999999885 678898888888642 2222222222233334444433322 25599999999999
Q ss_pred cch-hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096 106 EKL-GLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 106 ~~~-g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
++. .+.+..+...+.......+.+...+..++.+++ ++....+++..+++........++...+...+..+
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhccc--------hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 865 356666656666666666777777766665543 34455556666666777778888888888887776
Q ss_pred HHHHH
Q 036096 185 MSISY 189 (440)
Q Consensus 185 ~~~~~ 189 (440)
+.++.
T Consensus 153 i~~~~ 157 (406)
T PF00474_consen 153 IMIIG 157 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 66
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.33 E-value=0.0043 Score=63.02 Aligned_cols=154 Identities=12% Similarity=0.052 Sum_probs=88.7
Q ss_pred ccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccC--CcccccHHHHHHHH
Q 036096 27 SRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVP--GKRFDRYYELGQHA 103 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~--~~~~~~y~~~~~~~ 103 (440)
.|+.+++-..+.+..+.+++. +++.|....+.|+...+. .+...+........+.+-.++.. +.+..|.+|+.++-
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~-~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~R 113 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWI-AIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENR 113 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHH
Confidence 678888888888888888765 577887766778642221 11111112222333333222111 22356889999999
Q ss_pred hccchh--hHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHH
Q 036096 104 FGEKLG--LWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLA 181 (440)
Q Consensus 104 ~G~~~g--~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 181 (440)
||++.. +.+..+...+.........+...+..++.+++ ++....+++..+++........++...+...+
T Consensus 114 yg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------i~~~~~iii~~~i~~~Yt~~GGl~av~~TD~i 185 (487)
T TIGR02121 114 FNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------LDYKTGLLIGALIIVIYTFFGGFLAVSWTDFV 185 (487)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 996422 22333333333333333444444544444432 34445556666777777788899999999888
Q ss_pred HHHHHHHH
Q 036096 182 AAVMSISY 189 (440)
Q Consensus 182 ~~~~~~~~ 189 (440)
..++++..
T Consensus 186 Q~~i~~~~ 193 (487)
T TIGR02121 186 QGLLMFFA 193 (487)
T ss_pred HHHHHHHH
Confidence 87765443
No 67
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.29 E-value=0.007 Score=62.32 Aligned_cols=149 Identities=11% Similarity=0.155 Sum_probs=94.6
Q ss_pred ccCCchhhHHHHHhhhhhcc-hhcchHHHHhhhCchHHHHHHHHHHHHHH-HHHHHHHHhhhccCCcccccHHHHHHHHh
Q 036096 27 SRNAKWWYSAFHNVTAMVGA-GVLGLPYAMSEIGWGPGIAVIVLSWIITL-YTLWQMVEMHEMVPGKRFDRYYELGQHAF 104 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~-GiL~lP~a~~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 104 (440)
.|+.+++...+.+..+.+++ ..++.|....+.|+- +.... +...+.. ....++.+-.++. +..|.+|+.++-|
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~-~g~~~~~~i~~~~~a~~lrr~---g~~T~~d~l~~Rf 140 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYS-LGFLVGWPIILFLIAERLRNL---GRYTFADVASYRL 140 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHH-HHHHHHHHHHHHHHHHHHHHc---CCccHHHHHHHHc
Confidence 57788888888888887776 578899877777853 32222 1111221 2223334433322 2569999999889
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096 105 GEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 105 G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
|+|.-|.+..+...+..+......+...+..++.+++ ++...-+++..+++........++...+...+..+
T Consensus 141 ~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T TIGR02711 141 KQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------LNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKAV 212 (549)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8655556666666655555555556666655555532 34444556666777777788899999999998887
Q ss_pred HHHH
Q 036096 185 MSIS 188 (440)
Q Consensus 185 ~~~~ 188 (440)
.++.
T Consensus 213 im~~ 216 (549)
T TIGR02711 213 LLLF 216 (549)
T ss_pred HHHH
Confidence 5544
No 68
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.26 E-value=0.0079 Score=62.05 Aligned_cols=151 Identities=10% Similarity=0.064 Sum_probs=97.2
Q ss_pred cccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHh
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAF 104 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 104 (440)
..|+.+++...+.+..+.++++ .++.|......|+. +................++.+-.++. +..|.+|+-++-|
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~---~~~T~~e~l~~Rf 105 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKF---GKYTVPDFIGDRY 105 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHC---CCccHHHHHHHHh
Confidence 3688999999999999988775 68889877777753 22121111111112334444444333 2558889988889
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096 105 GEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 105 G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
|++..|.+..+...+..+......+...+..++.+++ ++...-+++..+++........++...+...+..+
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~i 177 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYI 177 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8766667777666666666666666666655555542 34455556666777777788899999999888876
Q ss_pred HHHH
Q 036096 185 MSIS 188 (440)
Q Consensus 185 ~~~~ 188 (440)
.++.
T Consensus 178 im~i 181 (552)
T TIGR03648 178 VLIV 181 (552)
T ss_pred HHHH
Confidence 5443
No 69
>PRK10484 putative transporter; Provisional
Probab=98.17 E-value=0.0088 Score=61.30 Aligned_cols=156 Identities=12% Similarity=0.030 Sum_probs=81.8
Q ss_pred cccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHH-HHHHHHHHhhhccCCcccccHHHHHHHH
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITL-YTLWQMVEMHEMVPGKRFDRYYELGQHA 103 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 103 (440)
..|+.+++-..+.+..+.++++ .++.|....+.|+.. ..... .+.+.. .....+.+-..+ .+..|.+|+.++-
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~-~~~~~-~~~~~~~~~~~~~~p~~~r---~~~~T~~e~l~~R 110 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSV-MAWEV-TAAIALIILALIFLPRYLK---SGITTIPDFLEER 110 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHH-HHHHH-HHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHh
Confidence 3688999999999988888776 578898776778542 11111 111111 222233332222 2256899999999
Q ss_pred hccchhhHHHHHHHHHHHHHH-HHHHHHHhhhhhHHhhhhhCCCCCCccchhhH----HHHHHHHHHHhcCCCcchhhHH
Q 036096 104 FGEKLGLWIIVPQQLLVEVGV-DIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFI----MIFASVHFVLSHLPSFNSVAVV 178 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~-~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~i~~pl~~~~~l~~l~~~ 178 (440)
||++.. ........+..... +...+...+..+.+++... ...+++..... ++..+++........++...+.
T Consensus 111 yg~~~~-~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~--~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~T 187 (523)
T PRK10484 111 YDKTTR-RIVSILFLIGYVVSFLPIVLYSGALALNSLFHVS--ELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVS 187 (523)
T ss_pred cCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 998655 33333332222222 2222222222233322110 00112222211 1223444566677889999999
Q ss_pred HHHHHHHHHHH
Q 036096 179 SLAAAVMSISY 189 (440)
Q Consensus 179 s~~~~~~~~~~ 189 (440)
..+..++++..
T Consensus 188 D~iQ~vim~i~ 198 (523)
T PRK10484 188 DTINGIGLLIG 198 (523)
T ss_pred HHHHHHHHHHH
Confidence 99888765543
No 70
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.17 E-value=0.012 Score=59.97 Aligned_cols=153 Identities=12% Similarity=0.048 Sum_probs=89.4
Q ss_pred cccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHH-HHHHHHHHH-hhhc-cCCcccccHHHHHH
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIIT-LYTLWQMVE-MHEM-VPGKRFDRYYELGQ 101 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~-~~s~~~l~~-~~~~-~~~~~~~~y~~~~~ 101 (440)
..|+.+++-..+.+..+.+++. .++.|....+.|+.... ..+...+. ......+.+ .... +.+.+..|.+|+.+
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~--~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESW--IAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 3688999999999998888886 57789887788864211 11111111 111122221 1110 11122568999999
Q ss_pred HHhccc--hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHH
Q 036096 102 HAFGEK--LGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVS 179 (440)
Q Consensus 102 ~~~G~~--~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 179 (440)
+-||++ .-+.+..+...+.....+.+.+...+..++.+++ ++....+++..++++.......++...+..
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------i~~~~~iii~~~iv~iYt~~GGl~aV~~TD 187 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------MSYETALWAGAAATILYTFIGGFLAVSWTD 187 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999963 2223344444444444344444444544444432 344555666667777778888999999999
Q ss_pred HHHHHHHHH
Q 036096 180 LAAAVMSIS 188 (440)
Q Consensus 180 ~~~~~~~~~ 188 (440)
.+..+.++.
T Consensus 188 ~iQ~~imi~ 196 (502)
T PRK15419 188 TVQASLMIF 196 (502)
T ss_pred HHHHHHHHH
Confidence 998876554
No 71
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.16 E-value=0.012 Score=59.66 Aligned_cols=151 Identities=14% Similarity=0.107 Sum_probs=100.8
Q ss_pred ccCCchhhHHHHHhhhhhc-chhcchHHHHhhhCchHHHHHHH---HHHHHHHHHHHHHHHhhhccCCcccccHHHHHHH
Q 036096 27 SRNAKWWYSAFHNVTAMVG-AGVLGLPYAMSEIGWGPGIAVIV---LSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQH 102 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG-~GiL~lP~a~~~~G~~~g~i~l~---~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~ 102 (440)
.|+.+.+-..+....+.++ .-.+++|....+.|+....+... ...+...+-...+.+.. + ..+..|.+|+.++
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~--~~~~~T~~d~l~~ 113 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-K--ARGATTIPDFLEA 113 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--ccCCccHHHHHHH
Confidence 5666767777777777777 56899999988889754333332 12222222333333333 2 2226699999999
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 036096 103 AFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAA 182 (440)
Q Consensus 103 ~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 182 (440)
-||++..|.+..+...+..+..+...+...++.++..++ .+...-..+...++......-.++...+...+.
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iq 185 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQ 185 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 999557779999999999999998888888887755543 223333445556666667777888888887777
Q ss_pred HHHHHH
Q 036096 183 AVMSIS 188 (440)
Q Consensus 183 ~~~~~~ 188 (440)
...+.+
T Consensus 186 g~im~i 191 (493)
T COG0591 186 GLIMLI 191 (493)
T ss_pred HHHHHH
Confidence 665443
No 72
>PRK09395 actP acetate permease; Provisional
Probab=98.13 E-value=0.016 Score=59.83 Aligned_cols=149 Identities=11% Similarity=0.132 Sum_probs=94.6
Q ss_pred ccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHH-HHHHHHHHhhhccCCcccccHHHHHHHHh
Q 036096 27 SRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITL-YTLWQMVEMHEMVPGKRFDRYYELGQHAF 104 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 104 (440)
.|+.+++...+.+..+.+|++ .++.|......|+. +....+. ..+.. ....++.+-.++ .+..|++|+.++-|
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~-~~~~~~~-~~~g~~~~~~~~~~~~r~---~g~~T~~d~l~~Ry 142 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYD-GLIYSIG-FLVGWPIILFLIAERLRN---LGKYTFADVASYRL 142 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHH-HHHHHHH-HHHHHHHHHHHHHHHHhh---CCCccHHHHHHHHc
Confidence 578888888888998988875 68899887777864 2222111 11211 122233332222 22569999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096 105 GEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 105 G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
|++.-|.+..+...+..+....+.+...+..++.++ +++....+++..+++........++...+...+..+
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~--------gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~i 214 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF--------GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAV 214 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 965455766666555555555555555555555443 234455566666777777888899999999888877
Q ss_pred HHHH
Q 036096 185 MSIS 188 (440)
Q Consensus 185 ~~~~ 188 (440)
.++.
T Consensus 215 im~~ 218 (551)
T PRK09395 215 LLLS 218 (551)
T ss_pred HHHH
Confidence 5544
No 73
>PRK11017 codB cytosine permease; Provisional
Probab=98.01 E-value=0.02 Score=56.64 Aligned_cols=174 Identities=14% Similarity=0.099 Sum_probs=91.3
Q ss_pred ccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcc
Q 036096 94 DRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFN 173 (440)
Q Consensus 94 ~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 173 (440)
.++..+.|..||.+ |..+..+...+...+.........++.+++..+ .+...+.++..++..+.... ..+
T Consensus 71 ~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~--------~~~~~~~~i~~~l~~~~~~~-G~~ 140 (404)
T PRK11017 71 LSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG--------LDINLLIVLSGLLMTVTAYF-GIS 140 (404)
T ss_pred cCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHHHHH-HHH
Confidence 47899999999975 557777777777777666655555555444332 12223445555555555544 345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccC-CcchHhhhhhCCCCCCC
Q 036096 174 SVAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAG-HNVVLEIQASIPSTPEK 252 (440)
Q Consensus 174 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~-~~~~~~i~~~m~~~~~~ 252 (440)
.+++++.++........+...+....+. .+.++..... +.+...+..++...+-.+.. -.+.++..+.. |+
T Consensus 141 ~i~~~~~~~~p~~~~~~~~~~~~~~~~~--~g~~~~~~~~--~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~----k~ 212 (404)
T PRK11017 141 ALTILSRIAVPAIALLGGYSVWLAVNDV--GGLDGLKAIV--PAEPLDFSAALTLVVGSFISGGTLTADFVRFG----RS 212 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--CchhhhhcCC--CCCcccHHHHHHHHHHHHHHhHhcCCChHhhc----cC
Confidence 5555666555533332222222222211 1111111001 11123455555544444433 46778888876 55
Q ss_pred CCCCCchhhhhHHHHHHHHHHHhHHhHHHhhcCCC
Q 036096 253 PSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQ 287 (440)
Q Consensus 253 p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~ 287 (440)
|++.- .....+..+...+..++|...-...|+.
T Consensus 213 ~~~~~--~~~~lg~~i~~~~~~~~G~~~a~~~~~~ 245 (404)
T PRK11017 213 AKIAV--LATMVAFFLGNSLMFIFGAAGAAVYGQA 245 (404)
T ss_pred cccee--ehhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 44322 4455666666666667776665666653
No 74
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.89 E-value=0.032 Score=55.12 Aligned_cols=293 Identities=13% Similarity=0.077 Sum_probs=133.5
Q ss_pred cccHHHHHHHHhccchhh--HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCC----CC---CccchhhHHHHHHHH
Q 036096 93 FDRYYELGQHAFGEKLGL--WIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPS----CK---DIRLTYFIMIFASVH 163 (440)
Q Consensus 93 ~~~y~~~~~~~~G~~~g~--~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~----~~---~~~~~~~~~i~~~i~ 163 (440)
..+|+...|..||-+.++ .+.+......-+|... -..+..+..++....+. .+ .......-.+..++.
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~if 178 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIF 178 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHH
Confidence 458999999999953332 2344444444444332 22344444444443331 10 111111112222222
Q ss_pred ---HHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCccccCCCCccccchhhHHHHHHHHHHhccC-Cc
Q 036096 164 ---FVLSHLPSFNSVAVVSLAAAVMSISYSVIAWVACLHK--GALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAG-HN 237 (440)
Q Consensus 164 ---~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~-~~ 237 (440)
-.++..+..++++.+...+-.+........++....+ +.....+..-.....+..+..+...+...+-.|.. .-
T Consensus 179 W~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~l 258 (497)
T COG1953 179 WVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLAL 258 (497)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 1223345677777666666554443333333333322 21111111101112222233444444333333322 47
Q ss_pred chHhhhhhCCCCCCCCCCCCchhhhhHHHHHHHHHHHhHHhH----HHhhcCCCc--hhHHhhCCCCchHHHHHHHHH-H
Q 036096 238 VVLEIQASIPSTPEKPSKKPMWKGVVIAYLLVAFCYFPVAMV----GYWAFGNQV--EDNVLMSLEKPRWLIAAANLF-V 310 (440)
Q Consensus 238 ~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~~~y~~~g~~----gy~~fg~~~--~~~il~~~~~~~~~~~~~~~~-~ 310 (440)
|+|...+.- |+|++.. +.-.++..+.+.+.-++|+. .+..||++. +.+++..+.+..+...+..+. .
T Consensus 259 N~~DFsRfa----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~ 332 (497)
T COG1953 259 NIPDFTRFA----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFA 332 (497)
T ss_pred CCchhhccc----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHH
Confidence 888888887 6665543 33456677777666666655 567799884 448888887543332122222 2
Q ss_pred HHHHHHhhccccccHHHHHHHHHhhhcCCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHH
Q 036096 311 VVHVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCII 390 (440)
Q Consensus 311 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~ 390 (440)
.-++-++..-...+.-.-+.+.++++.+.+ +-..+.....+...+.-+=..-..+...++..|++.+++...++- =
T Consensus 333 iati~~Ni~aN~vsp~~D~s~l~Pk~in~k--rg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmia--D 408 (497)
T COG1953 333 VATISTNIAANIVSPGYDLSALFPKYINIK--RGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIA--D 408 (497)
T ss_pred HHHHhhhHHhccCChHHHHHHhcccccchh--hhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 333334444455555555566665443311 111111111122222222112234555566556666665555543 3
Q ss_pred HHHHhcCC
Q 036096 391 WLAIYKPR 398 (440)
Q Consensus 391 ~~~~~~~~ 398 (440)
|+..||++
T Consensus 409 yflirk~~ 416 (497)
T COG1953 409 YFLVRKGR 416 (497)
T ss_pred HHhhhcCc
Confidence 44555543
No 75
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.86 E-value=0.015 Score=57.05 Aligned_cols=146 Identities=13% Similarity=0.164 Sum_probs=80.0
Q ss_pred cCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhc---cCCcccccH-----HH
Q 036096 28 RNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEM---VPGKRFDRY-----YE 98 (440)
Q Consensus 28 ~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~---~~~~~~~~y-----~~ 98 (440)
++.|.+|+.+..+.+.+|.| ++++|.+.+..| ..+++.+.+.+++..-+.+.-+-...+ ++++ .+| ..
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~--g~~~GGP~yy 121 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDAD--GVFRGGPMYY 121 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCC--CCEecChHHH
Confidence 45899999999999999998 999999977666 456555666555554433322222221 2222 135 67
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHHH-HHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhH
Q 036096 99 LGQHAFGEKLGLWIIVPQQLLVEVGV-DIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAV 177 (440)
Q Consensus 99 ~~~~~~G~~~g~~~~~~~~~~~~~~~-~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 177 (440)
+-+...||+.| .+..++ .+..++. ..... +.+.+.++... +.+. +...+...++..+.....++.+..
T Consensus 122 i~~gl~~k~lg-~lfa~~-~i~~f~~~~~~Q~----nsi~~~~~~~~----~~~~-~v~~i~l~~l~~~vi~GGik~Ia~ 190 (425)
T TIGR00835 122 IKKGLGMRWLA-VLFAVF-LIASFGIGNMVQA----NAIASALSNAF----NVPK-LVTGIVLTVLTALIIFGGLKRIAK 190 (425)
T ss_pred HHHHhCccHHH-HHHHHH-HHHHHhhhHHHHH----HHHHHHHHHHc----CCcH-HHHHHHHHHHHHHHHhcCchHHHH
Confidence 77777777666 444444 3222232 22222 22222332111 1222 222233333344445567888887
Q ss_pred HHHHHHHHHH
Q 036096 178 VSLAAAVMSI 187 (440)
Q Consensus 178 ~s~~~~~~~~ 187 (440)
++...+..+.
T Consensus 191 v~~~lvP~m~ 200 (425)
T TIGR00835 191 ISSVVVPFMA 200 (425)
T ss_pred HHHHHHHHHH
Confidence 7777666443
No 76
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.70 E-value=0.0014 Score=65.73 Aligned_cols=243 Identities=13% Similarity=0.094 Sum_probs=119.8
Q ss_pred cccCCchhhHHHHHhhhhhcchhcchHHHHhhh--CchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHH
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEI--GWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHA 103 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~--G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 103 (440)
++|+.++++-.....+..+....+.+-...... ++..+++..++..++...-.........++. .++..+.|..
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~G----l~~~v~sR~~ 80 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRTG----LPTMVLSRAS 80 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC-------HHHHTTTT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccC----CCchhcchhc
Confidence 456667777777777776666666555443333 3444555555555544444444444444332 2678889999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCC---------CccchhhHHHHHHHHHHHhcCCCcch
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCK---------DIRLTYFIMIFASVHFVLSHLPSFNS 174 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~~i~~pl~~~~~l~~ 174 (440)
||. .|..+..+...+...+.........++.+..+.+...+... ........++..++..+. .....+.
T Consensus 81 FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~g~~~ 158 (440)
T PF02133_consen 81 FGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLF-AIYGMKA 158 (440)
T ss_dssp S-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHH-HCTHHHH
T ss_pred cCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHH-HhcCHHH
Confidence 996 57788899888999998888888899999988876543100 011111112222222222 2345666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccC-CcchHhhhhhCCCCCCCC
Q 036096 175 VAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAG-HNVVLEIQASIPSTPEKP 253 (440)
Q Consensus 175 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~-~~~~~~i~~~m~~~~~~p 253 (440)
++.+..+.........+........+... +.... ....+.....+..++....-.+.. ..+.++..+.+ |++
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~----~~~ 231 (440)
T PF02133_consen 159 LRRLAVIAAPILLVVFIGMLIWALSKAGG-GPLLS--APASPSPSGSFLAAIALVIGSWISWAPNASDYSRYA----KSD 231 (440)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCT--HHHCC--S--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC------H
T ss_pred HHhHHhhhhHHHHhhhhheeEEEeecCCc-chhhh--CcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhC----CCC
Confidence 66666665553332222222222222111 11111 111111111344444433332222 24556888887 444
Q ss_pred CCCCchhhhhHHHHHHHHHHHhHHhHHHhh
Q 036096 254 SKKPMWKGVVIAYLLVAFCYFPVAMVGYWA 283 (440)
Q Consensus 254 ~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~ 283 (440)
++ -.+...++..........++..|...
T Consensus 232 ~~--~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 232 TS--AWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 33 23666777777777777777665443
No 77
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.56 E-value=0.057 Score=53.09 Aligned_cols=327 Identities=16% Similarity=0.185 Sum_probs=155.2
Q ss_pred hhHHHHHhhhhhcchhcchHHHHh-hhC--chHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccchh
Q 036096 33 WYSAFHNVTAMVGAGVLGLPYAMS-EIG--WGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLG 109 (440)
Q Consensus 33 ~~~~~~l~~~~iG~GiL~lP~a~~-~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g 109 (440)
...-+.+..-..|+|-|-.|-... ++| |+++.+..++.++.--.-..+ -. .+.++ ++++++++. ||+.+
T Consensus 6 l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvi--a~-~~~~~----~~~~l~~~v-~~~f~ 77 (427)
T PF05525_consen 6 LIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVI--AV-AKSGG----GIEDLASRV-GPKFA 77 (427)
T ss_pred hhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH--HH-hhcCC----CHHHHhccc-CcHHH
Confidence 455677788889999999986533 444 666777766665544322211 11 11222 778888775 66677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhh----hhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 036096 110 LWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHD----TVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVM 185 (440)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (440)
..+..+ +.+ ..| =+..+-++...-.+ .+.+....++.....+++..+.+.+++.|+ |-...+.-+-+-.
T Consensus 78 ~if~~~-i~l-~IG----P~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~~p~-kivd~iGk~LTP~ 150 (427)
T PF05525_consen 78 LIFTIL-IYL-SIG----PLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSLNPS-KIVDRIGKFLTPI 150 (427)
T ss_pred HHHHHH-HHH-HHH----hcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHhchh-hHHHHHHHHHHHH
Confidence 333322 221 111 11222222222222 111112234555556666666666665542 2233333333333
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccc--CCCCccccch---hhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCC--Cc
Q 036096 186 SISYSVIAWVACLHKGALPNVDYG--LRASKTTGNV---FNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKK--PM 258 (440)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~--~~ 258 (440)
.+..+.++++..+.+...+..++. +...+...++ .+-..+++...|+-.- ..-.++.. .+|+++. ..
T Consensus 151 LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iI----i~~i~~~g--~~~~k~~~~~~ 224 (427)
T PF05525_consen 151 LLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIII----INAIRQKG--YKDKKEIKKYT 224 (427)
T ss_pred HHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHhC--CCCHHHHHHHH
Confidence 333344444444443222111111 1111111111 1234555656665432 23233321 1222221 11
Q ss_pred hhhhhHHHHHHHHHHHhHHhHHHhhcC---CCch-hHHhhCCCC---chHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Q 036096 259 WKGVVIAYLLVAFCYFPVAMVGYWAFG---NQVE-DNVLMSLEK---PRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEA 331 (440)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gy~~fg---~~~~-~~il~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 331 (440)
.++-.++.....++|...+..|...-+ ++.+ +.++....+ .+....+..+.+.++++++-.-....+-+.+++
T Consensus 225 ~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~ 304 (427)
T PF05525_consen 225 IKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSE 304 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233346667777788887777765433 3333 344444321 133445555666677776666666666677776
Q ss_pred HHhhhcCCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 036096 332 FLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAI 394 (440)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~ 394 (440)
..+ |. ............++++|. -.++.++.+. ...+.++.|..+-+..
T Consensus 305 ~~~-ki-------sY~~~v~i~~i~S~~ian--~Gl~~Ii~~s----~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 305 LFP-KI-------SYKVWVIIFTIFSFIIAN--LGLDQIIKIS----VPILMFIYPVAIVLIL 353 (427)
T ss_pred Hhc-cc-------ChHHHHHHHHHHHHHHHH--hCHHHHHHHH----HHHHHHHhHHHHHHHH
Confidence 654 21 111222233334444442 3456666664 4777888887665543
No 78
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.53 E-value=0.0062 Score=61.46 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHHHHHHHHHHHhHHhHH
Q 036096 221 NFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVG 280 (440)
Q Consensus 221 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~~~y~~~g~~g 280 (440)
++-..+++++=+=.|.-.=.....|+ |+|+| .++|....+...++.+|++..+.-
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgEL----k~PSk-SIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGEL----KAPSK-SIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccc----cCccc-cCCccchHHHHHHHHHHHHHHHHh
Confidence 34444554433333332223445566 99998 799999999999999999986654
No 79
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.11 Score=50.96 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=73.1
Q ss_pred ccCCchhhHHHHHhhhhhcchhcchHHH-HhhhCchHHHHHHHHHHHHHHHHHH-HHHHhhhccCCcccccHHHHHHHHh
Q 036096 27 SRNAKWWYSAFHNVTAMVGAGVLGLPYA-MSEIGWGPGIAVIVLSWIITLYTLW-QMVEMHEMVPGKRFDRYYELGQHAF 104 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~g~i~l~~~~~~~~~s~~-~l~~~~~~~~~~~~~~y~~~~~~~~ 104 (440)
++..+..+..+....+-+|.|-.+--.+ =++.|+-+. ..++.+-+..+-.. +-.|... ..++ +..|..++.|
T Consensus 14 ~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll--~vills~l~~~~~Q~~~arLgi-vTG~---~laq~ir~~y 87 (416)
T COG1914 14 RKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLL--WVILLSNLMAYILQELSARLGI-VTGK---GLAEAIRERY 87 (416)
T ss_pred HHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HhCC---cHHHHHHHHc
Confidence 3445566667777778888886665433 334554322 22222222222222 2222222 1222 6788888889
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchh
Q 036096 105 GEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSV 175 (440)
Q Consensus 105 G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 175 (440)
+|+++ ++.++...+....+.++-..-.+-.++.++. .+...-.++.++..+.....++.+.+
T Consensus 88 ~~~~~-~~~~~~~~i~~~at~iae~~G~aial~ll~~--------ip~~~g~iItav~~~iil~~~~~r~~ 149 (416)
T COG1914 88 LPGLG-ILLWILAEIAGIATDIAEVAGIAIALNLLFG--------IPLIIGAVITAVDVLIILLLKGYRLL 149 (416)
T ss_pred cchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHHHHHhcchHHH
Confidence 99888 8888888888888887777766655554432 22233344455444444444434433
No 80
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.26 E-value=0.015 Score=55.18 Aligned_cols=147 Identities=15% Similarity=0.142 Sum_probs=96.6
Q ss_pred ccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh-hccCCcccccHHHHHHHHhc
Q 036096 27 SRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMH-EMVPGKRFDRYYELGQHAFG 105 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~~~~y~~~~~~~~G 105 (440)
--..+.+....+=..++-|+|...=|..-..-||.++.+.+++.+++..--+....-.. .|++++ |.+|++++..|
T Consensus 49 YvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~---Si~~i~~~~lG 125 (376)
T PF02554_consen 49 YVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGK---SIGEIAGKYLG 125 (376)
T ss_pred CCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCc---cHHHHHHHHHH
Confidence 33445567778888899999999999888999999999988776666655555554433 344444 99999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 036096 106 EKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVM 185 (440)
Q Consensus 106 ~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (440)
|+ +|.+..+..++.+.....++....++.+...-+. ....+..+...+.+.+...|+--.+...+.+++..
T Consensus 126 ~~-~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~~--------~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvl 196 (376)
T PF02554_consen 126 KR-AKKLFLIFIFFLLILVIAVFADVVANTFVNSPWA--------ATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVL 196 (376)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhH--------HHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHH
Confidence 85 5588888888888887777777666655332111 11223333333344444433333355666666553
No 81
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.26 E-value=0.22 Score=48.47 Aligned_cols=81 Identities=12% Similarity=0.200 Sum_probs=51.0
Q ss_pred cHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhc--CCCc
Q 036096 95 RYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSH--LPSF 172 (440)
Q Consensus 95 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l 172 (440)
+..|..++.+||+++ +...+...+.+.....+-....+..++.+. .++...+.++..+..+.+.+ .++.
T Consensus 43 ~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al~ll~--------g~~~~~~~~~~~~~~~~ll~~~~~~y 113 (358)
T PF01566_consen 43 GLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIALNLLF--------GIPLWIWVLLVAVIAILLLWLSSGGY 113 (358)
T ss_pred ChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 678888888998777 666766666677666666665555554443 23446666666665555555 5666
Q ss_pred chhhHHHHHHHH
Q 036096 173 NSVAVVSLAAAV 184 (440)
Q Consensus 173 ~~l~~~s~~~~~ 184 (440)
+.+..+...-..
T Consensus 114 ~~~E~~~~~lv~ 125 (358)
T PF01566_consen 114 RRLERILKVLVA 125 (358)
T ss_pred hHHHHHHHHHHH
Confidence 666555544433
No 82
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.19 E-value=0.27 Score=48.22 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=82.8
Q ss_pred ccccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHHHHH---HHHHhhhccCCcc--cccHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLYTLW---QMVEMHEMVPGKR--FDRYYE 98 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~---~l~~~~~~~~~~~--~~~y~~ 98 (440)
+++++.|.+|+.+.-+.+.+|.| |.+...|....| ..+++.+.+.+++..-+-. .|....++.++++ +-.=..
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~y 92 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMY 92 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHH
Confidence 34567999999999999999999 567888887655 4455557776666644333 2222222111111 111234
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHHH--HHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhh
Q 036096 99 LGQHAFGEKLGLWIIVPQQLLVEVGV--DIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVA 176 (440)
Q Consensus 99 ~~~~~~G~~~g~~~~~~~~~~~~~~~--~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 176 (440)
+.++.+|+||...+..++ .+..++. .....-.+.+.+++-+ .++... .-+...++..+.....++++.
T Consensus 93 yi~~gl~~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~~~~~f--------~i~~~~-~gi~l~~l~~~vi~GGikrI~ 162 (416)
T PF01235_consen 93 YIEKGLGSKWLAILFAIF-LIIAFGIGFNMVQANSIADALSSAF--------GIPPWI-TGIILAILVALVIFGGIKRIA 162 (416)
T ss_pred HHHHHhccchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhc--------cccHHH-HHHHHHHHHHHHHHcchhHHH
Confidence 567778876654555544 2222222 2222222222222211 123222 233333344455566777777
Q ss_pred HHHHHHHH-HHHHHHHHHHH
Q 036096 177 VVSLAAAV-MSISYSVIAWV 195 (440)
Q Consensus 177 ~~s~~~~~-~~~~~~~i~~~ 195 (440)
.++..-+- +.+.+++..++
T Consensus 163 ~v~~~lVP~Ma~~Yi~~~l~ 182 (416)
T PF01235_consen 163 KVSEKLVPFMAILYILGGLI 182 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66655553 33344444333
No 83
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.14 E-value=0.33 Score=48.40 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=28.7
Q ss_pred cHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 036096 95 RYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKK 138 (440)
Q Consensus 95 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~ 138 (440)
+..|..++.|||++. ++..+...+.+.+...+-..-.+..++.
T Consensus 95 ~l~~~ir~~~~~~~~-~~~~~~~~l~~~~~~~~e~~G~a~al~l 137 (439)
T PRK00701 95 DLAQACRDRYPRPVV-WFLWIQAELAIMATDLAEVIGAAIALKL 137 (439)
T ss_pred CHHHHHHHHCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999998666 6666666666666666655555444433
No 84
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.13 E-value=0.31 Score=47.81 Aligned_cols=238 Identities=15% Similarity=0.114 Sum_probs=129.6
Q ss_pred cCCchhhHHHHHhhhhhc-chhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhcc
Q 036096 28 RNAKWWYSAFHNVTAMVG-AGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGE 106 (440)
Q Consensus 28 ~~~s~~~~~~~l~~~~iG-~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~ 106 (440)
++.+-.|.-+.+-+.-+. +..|.++......|+- |.+-. +++...|....+.-+. +.++-+++|++|....-|+.
T Consensus 41 ~~i~~fqNGlAiagdyMSaASflGiag~I~~~GYd-G~~Y~--iG~~~Gy~i~~fL~A~-~LRk~GkyT~aD~~a~Ry~~ 116 (529)
T COG4147 41 GRITGFQNGLAIAGDYMSAASFLGIAGLIFISGYD-GLIYS--IGWTGGYPILLFLIAE-YLRKLGKYTFADFIADRYKS 116 (529)
T ss_pred CcccccccceehhccccchHhhhchhHhhhhcccc-hHHHH--HHHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHHhc
Confidence 444444544444444443 3567777666666653 33322 2333333333222221 11222366999998777777
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 036096 107 KLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMS 186 (440)
Q Consensus 107 ~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 186 (440)
+.-|.+..+.-.+..+...++.++-.+..+..+++ .+...-+++..+++........++...|.+.+-.++.
T Consensus 117 ~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--------v~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlL 188 (529)
T COG4147 117 NPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--------VPYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLL 188 (529)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--------CCceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 77777777766666666677777777766666654 3334555666777777777889999999999887754
Q ss_pred HH-HHHHHHHHHHhcCCCCC--------ccccC--CCCcc----ccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCC
Q 036096 187 IS-YSVIAWVACLHKGALPN--------VDYGL--RASKT----TGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPE 251 (440)
Q Consensus 187 ~~-~~~i~~~~~~~~~~~~~--------~~~~~--~~~~~----~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~ 251 (440)
+. .++.++....+.+.+++ .++.+ ....+ ..++.+++.-.-..++...+ .|++.-.. -.
T Consensus 189 i~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAg---LPHil~RF---fT 262 (529)
T COG4147 189 IVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAG---LPHILMRF---FT 262 (529)
T ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCC---CCeEEEEE---Ee
Confidence 43 23222222232222221 11110 01111 12333444444444555544 34332211 02
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHhHHhHHHhh
Q 036096 252 KPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWA 283 (440)
Q Consensus 252 ~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~ 283 (440)
-|+-+.-+|.+.++..+...+|+..-..|+.+
T Consensus 263 vp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 263 VPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333344889999999999999987776643
No 85
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.91 E-value=0.48 Score=46.40 Aligned_cols=240 Identities=13% Similarity=0.125 Sum_probs=115.7
Q ss_pred CCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCcccccHHHHHHHHhc
Q 036096 29 NAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHE--MVPGKRFDRYYELGQHAFG 105 (440)
Q Consensus 29 ~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~--~~~~~~~~~y~~~~~~~~G 105 (440)
-.|...-++..+++.+|-| +--.||...+.|-..-++..++ ..+..=--.++.|..- +.+++...+|+++.. +
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli-~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~ 83 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLI-FLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---K 83 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHH-HHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---C
Confidence 3455778999999999998 5678999888885533333333 3333223334455332 112222335666554 3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCC----C-------Cccc-hhhHHHH---HHHHHHHhcCC
Q 036096 106 EKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSC----K-------DIRL-TYFIMIF---ASVHFVLSHLP 170 (440)
Q Consensus 106 ~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~----~-------~~~~-~~~~~i~---~~i~~pl~~~~ 170 (440)
|+ . ..+.+...+..+..+.=|.+..+-.+..+.....+.. + .... ....+.. ..++.-+...|
T Consensus 84 ~~-~-~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~ 161 (439)
T COG0733 84 KK-W-EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSR 161 (439)
T ss_pred cc-c-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 32 2 1223333444445555566666655555544333210 0 0011 1111111 11222223344
Q ss_pred Ccch-hhHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCccccC-CCCccccchhhHHHHHHHHHHhccCC-cchHhhhhhC
Q 036096 171 SFNS-VAVVSLAAAVMSISYSVIAWVACLH-KGALPNVDYGL-RASKTTGNVFNFFSALGDVAFAFAGH-NVVLEIQASI 246 (440)
Q Consensus 171 ~l~~-l~~~s~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~-~~~~~i~~~m 246 (440)
.+++ ....+.+-+-..++..++.+++... .+..++.+.-. ++...-.++.....+++...|+..-- ....+..+.+
T Consensus 162 GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL 241 (439)
T COG0733 162 GVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYL 241 (439)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5444 5566666665444444444444442 22222222111 11112223566788899998888654 4445555555
Q ss_pred CCCCCCCCCCCchhhhhHHHHHHHHHHHhHHhHH
Q 036096 247 PSTPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVG 280 (440)
Q Consensus 247 ~~~~~~p~~~~~~~~~~~s~~~~~~~y~~~g~~g 280 (440)
|+|.++.+........-+.+-++.|+.-
T Consensus 242 ------~k~~~l~~sa~~v~~~n~~~s~lAGl~I 269 (439)
T COG0733 242 ------SKKSDLVSSALSIVLLNTLISLLAGLVI 269 (439)
T ss_pred ------CcccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344555655555555555555555443
No 86
>PRK15015 carbon starvation protein A; Provisional
Probab=96.51 E-value=0.059 Score=54.84 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=74.1
Q ss_pred chhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh-hccCCcccccHHHHHHHHhccchh
Q 036096 31 KWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMH-EMVPGKRFDRYYELGQHAFGEKLG 109 (440)
Q Consensus 31 s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~~~~y~~~~~~~~G~~~g 109 (440)
+.+-..-+=..++-|+|.+-=|..-.+.||.|+.+.+++..++..--..+..-.. .|++++ |..|++++..|++ +
T Consensus 84 ~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~Gr---Sig~ia~~~iG~~-~ 159 (701)
T PRK15015 84 DKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGR---SLGELVKEEMGPT-A 159 (701)
T ss_pred CccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCc---cHHHHHHHHhhHH-H
Confidence 3345566777888999999999988899999999988876666554444444432 334443 9999999999986 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 036096 110 LWIIVPQQLLVEVGVDIMYMLTGGQCL 136 (440)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~y~i~~~~~~ 136 (440)
+.+..+..++.+.....++...+...+
T Consensus 160 ~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 160 GVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777776666666666554
No 87
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.032 Score=55.75 Aligned_cols=234 Identities=15% Similarity=0.212 Sum_probs=120.4
Q ss_pred CchhhHHHHH-hhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhc--cCCcccccHHHHHHHHhc
Q 036096 30 AKWWYSAFHN-VTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEM--VPGKRFDRYYELGQHAFG 105 (440)
Q Consensus 30 ~s~~~~~~~l-~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~--~~~~~~~~y~~~~~~~~G 105 (440)
-+|++.++.- +=.+.|.= .|=+++...++|+..+++++.....++..+..--....++ .++.+ .|.-+ .+.+|
T Consensus 30 fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg--~yfli-s~slg 106 (643)
T KOG2083|consen 30 FGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG--VYFLI-SRSLG 106 (643)
T ss_pred EeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc--EEEEE-Eeccc
Confidence 4666655432 22233332 3557999999999999998877666666555433332221 11111 34333 35567
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 036096 106 EKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVM 185 (440)
Q Consensus 106 ~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 185 (440)
+..| -.+.+...+.+.-.+..|.+-.++...++++... ..-++. ...+..++.+.++.. ..+.-+..+.+-+.+
T Consensus 107 ~efg-gsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s--~~~i~g--i~~vt~~ill~i~~a-g~~w~~k~q~~ll~i 180 (643)
T KOG2083|consen 107 PEFG-GSIGIIYAFANAVATAMYVVGFAESVAHLFETES--KEMIDG--IGSVTVLILLAINVA-GVEWEAKLQIVLLLI 180 (643)
T ss_pred cccc-chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc--HHHhcc--hhHHHHHHHHHhhhc-cchhHHHHHHHHHHH
Confidence 7777 6677777888888888999999999988887642 111111 111222222222322 333333333333221
Q ss_pred HHHHHHHHHHHHHhc-C-----CCCC-ccccC-CCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCC
Q 036096 186 SISYSVIAWVACLHK-G-----ALPN-VDYGL-RASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKP 257 (440)
Q Consensus 186 ~~~~~~i~~~~~~~~-~-----~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~ 257 (440)
.++...--++..+.. . .... .+... +..+....-..+++-+++++=+..|.-.=.++.+++ ++|++ .
T Consensus 181 l~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL----~~Pq~-~ 255 (643)
T KOG2083|consen 181 LLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDL----KDPQK-A 255 (643)
T ss_pred HHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCC----CCchh-h
Confidence 111111111111110 0 0000 00000 000000001245555555555554433335566677 89987 6
Q ss_pred chhhhhHHHHHHHHHHHhHH
Q 036096 258 MWKGVVIAYLLVAFCYFPVA 277 (440)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g 277 (440)
.++....+....+.+|..+.
T Consensus 256 IP~GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 256 IPLGALLAIGVSTLLYLIFI 275 (643)
T ss_pred cccchhhhhhhhhhhhhhhh
Confidence 88999999999999996653
No 88
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=95.93 E-value=2.6 Score=43.86 Aligned_cols=95 Identities=18% Similarity=0.324 Sum_probs=55.9
Q ss_pred HHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhc--cCCcccccHHHHHHHHhccchhhHHH
Q 036096 37 FHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEM--VPGKRFDRYYELGQHAFGEKLGLWII 113 (440)
Q Consensus 37 ~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~--~~~~~~~~y~~~~~~~~G~~~g~~~~ 113 (440)
.-.+-.++|.= .+=|-+....+|..-+..+.+++++.+..++.-+...+.. .|..+ +|.-+. +.+||.+| -.+
T Consensus 122 LPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG--sYfmIS-RsLGPEFG-gAV 197 (1075)
T KOG2082|consen 122 LPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG--SYFMIS-RSLGPEFG-GAV 197 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--eeEEEe-cccCcccc-cee
Confidence 33344444433 2336777888888888888888887777777766554431 23333 676555 45677777 555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 036096 114 VPQQLLVEVGVDIMYMLTGGQC 135 (440)
Q Consensus 114 ~~~~~~~~~~~~~~y~i~~~~~ 135 (440)
.++..+-.-.....|++-.-+.
T Consensus 198 GlcFYLgtT~AaaMYIlGaVEi 219 (1075)
T KOG2082|consen 198 GLCFYLGTTVAAAMYILGAVEI 219 (1075)
T ss_pred eehhhhhhHHHHHHHHHhHHHH
Confidence 5555555544555555544433
No 89
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=95.91 E-value=1.9 Score=42.27 Aligned_cols=330 Identities=14% Similarity=0.148 Sum_probs=153.3
Q ss_pred ccccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHHHHH---HHHHhhhccCCcccc--cHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLYTLW---QMVEMHEMVPGKRFD--RYYE 98 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~---~l~~~~~~~~~~~~~--~y~~ 98 (440)
++++..|.+|+.++-+.+.+|+| +-+...|.+-.| ..++..+.+++++..-+.. .|....++.++++++ .=.-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 45677899999999999999999 456888887655 4466667777766644433 222222212211111 1113
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHH--HHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhh
Q 036096 99 LGQHAFGEKLGLWIIVPQQLLVEVG--VDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVA 176 (440)
Q Consensus 99 ~~~~~~G~~~g~~~~~~~~~~~~~~--~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 176 (440)
+-++-+|.||--.+.. ...+..++ .+....-.+++.+++-++ ++ ....-+...++..+.....+++..
T Consensus 137 Yi~kGl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~af~--------~~-~~~~gi~la~l~~~VI~GGi~rIa 206 (452)
T COG1115 137 YIEKGLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASALANAFG--------IP-PLVTGIVLALLVALVIFGGIKRIA 206 (452)
T ss_pred HHHhhcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHhcC--------Cc-HHHHHHHHHHHHHHHHHcchHHHH
Confidence 3556666544324444 22223333 333344444444433321 22 222333344445555677888888
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhc-CCCCCc-c----ccCCCCccccchh------hHHHHHHHHHHhccC-CcchHhh
Q 036096 177 VVSLAAAV-MSISYSVIAWVACLHK-GALPNV-D----YGLRASKTTGNVF------NFFSALGDVAFAFAG-HNVVLEI 242 (440)
Q Consensus 177 ~~s~~~~~-~~~~~~~i~~~~~~~~-~~~~~~-~----~~~~~~~~~~~~~------~~~~~~~~~~faf~~-~~~~~~i 242 (440)
.++...+- +.+.+++..++..+.+ +..|+. . ..+.......+.. .+.+.+.=-+||=+. ....|..
T Consensus 207 ~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~a 286 (452)
T COG1115 207 KVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIA 286 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhH
Confidence 77777664 3444554433333322 222210 0 0010001111111 223333335566554 5666666
Q ss_pred hhhCCCCCCCCCCCCchhhhhHHHHH-HHHHHHhHHhH----HHhhcCCCchh------HHhhCCCCchHHHHHHHHHHH
Q 036096 243 QASIPSTPEKPSKKPMWKGVVIAYLL-VAFCYFPVAMV----GYWAFGNQVED------NVLMSLEKPRWLIAAANLFVV 311 (440)
Q Consensus 243 ~~~m~~~~~~p~~~~~~~~~~~s~~~-~~~~y~~~g~~----gy~~fg~~~~~------~il~~~~~~~~~~~~~~~~~~ 311 (440)
+..-+ + +||-|.-+ +-..+..+ +.++....++. |-+..++..++ ..-..++ ++....+.+.+.
T Consensus 287 aAaA~-~-~hPv~QGl--v~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g--~~G~~fv~i~l~ 360 (452)
T COG1115 287 AAAAK-T-DHPVKQGL--VQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLG--SWGSYFVAIALF 360 (452)
T ss_pred HHhhc-C-CCcHHHhH--HHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcC--ccHHHHHHHHHH
Confidence 66542 2 67776552 22333333 33333333333 33222332122 1122223 344444444444
Q ss_pred HHHHHhhccccccHHHHHHHHHhhhcCCCcchhhhhhhHHHHHHHHHHHHhh-ccchhHHHHHhhhhh
Q 036096 312 VHVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMT-FPFFGGLLSFFGGLA 378 (440)
Q Consensus 312 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~-~p~~~~i~~l~G~~~ 378 (440)
+--.++..-+.+=-.+.++-...+ +....+.|...+....+-+.. .+..+.+-++..++.
T Consensus 361 lFafTTIlg~yyyge~~~~fl~~~-------k~~~~~~r~~~l~~v~~Ga~~~l~~vW~laD~~~glM 421 (452)
T COG1115 361 LFAFTTILGWYYYGEKNIEFLFGS-------KKAILLYRLIVLAMVFLGAVLSLDLVWNLADLFMGLM 421 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-------chHHHHHHHHHHHHHHHhccccHHHHHHHHHHhchHH
Confidence 444444444444444444444321 133456676666655555544 344555555544443
No 90
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=95.62 E-value=2.2 Score=40.73 Aligned_cols=159 Identities=16% Similarity=0.211 Sum_probs=98.5
Q ss_pred ccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHH-HHHHHHHhh----hccCCcccccHHHHH
Q 036096 27 SRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLY-TLWQMVEMH----EMVPGKRFDRYYELG 100 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~-s~~~l~~~~----~~~~~~~~~~y~~~~ 100 (440)
.|+.+-.-..++...+-+|+. ..+=|.+..+-| +|++++..+-+-..+ +.-.+.+-. ++++ ..+..|+-
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~G--lgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~n---AltI~D~l 112 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYG--LGWVLLAMIQVPTVWLALGVLGKKFAILAREYN---ALTINDLL 112 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhc--hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhC---CeeHHHHH
Confidence 455666667777777777764 566788877778 456665555444333 444444422 2222 34788888
Q ss_pred HHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHH
Q 036096 101 QHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSL 180 (440)
Q Consensus 101 ~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 180 (440)
++-|..+.-.++.++.+.+...+.+.+..+-.++.++... +.++..-.++++..+..-..+...+.....-.
T Consensus 113 ~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~--------gidY~tgL~ifa~~V~iYt~fGGFRAvvltD~ 184 (473)
T COG4145 113 FARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL--------GIDYTTGLLIFAVSVAIYTAFGGFRAVVLTDT 184 (473)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------CCCchhhHHHHHHHHHHHHhhcceeeeehHHH
Confidence 7776555556777777777777888777777777666654 34556666777777777677777776665555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036096 181 AAAVMSISYSVIAWVACL 198 (440)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~ 198 (440)
+.-+.+++-.++..+..+
T Consensus 185 IQG~vmligtv~Lf~~~i 202 (473)
T COG4145 185 IQGLVMLIGTVVLFVGVI 202 (473)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 544444433333333333
No 91
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.89 E-value=0.72 Score=44.94 Aligned_cols=79 Identities=15% Similarity=0.325 Sum_probs=58.9
Q ss_pred cccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCc
Q 036096 93 FDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSF 172 (440)
Q Consensus 93 ~~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l 172 (440)
..-..+++++.||+ .|..+..+...+.|+.++++.....+|+++++.+. .++..|.++..++.+.++.. ++
T Consensus 254 ~~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k-------~~y~~~v~~~~l~s~~ia~~-Gl 324 (378)
T TIGR00796 254 AQILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK-------LSYKTWVIVFTLFSFIVANL-GL 324 (378)
T ss_pred HHHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHh-CH
Confidence 33567889999997 68799999999999999999999998888777542 45677777666666655544 45
Q ss_pred chhhHHHH
Q 036096 173 NSVAVVSL 180 (440)
Q Consensus 173 ~~l~~~s~ 180 (440)
+.+-.++.
T Consensus 325 ~~Ii~~~~ 332 (378)
T TIGR00796 325 TQIISISI 332 (378)
T ss_pred HHHHHHHH
Confidence 55444433
No 92
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=94.74 E-value=5.3 Score=40.27 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=73.1
Q ss_pred CchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh-hccCCcccccHHHHHHHHhccch
Q 036096 30 AKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMH-EMVPGKRFDRYYELGQHAFGEKL 108 (440)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~~~~y~~~~~~~~G~~~ 108 (440)
.+.+-...+=..++-|+|.+.=|..-++.||.++.+.+++..++..--...++-.. .|++++ |..|++++..|++.
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~---Si~~ia~~~lG~~a 128 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGK---SIGEIAGKYLGRTA 128 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCc---cHHHHHHHHhhhhH
Confidence 34455666777788899999999999999999999988877666655555554432 344444 99999999999865
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 036096 109 GLWIIVPQQLLVEVGVDIMYMLTGGQCL 136 (440)
Q Consensus 109 g~~~~~~~~~~~~~~~~~~y~i~~~~~~ 136 (440)
| .+..+...+.......++.......+
T Consensus 129 ~-~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 129 K-VFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 77776666666655555555444433
No 93
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=94.38 E-value=5.9 Score=39.28 Aligned_cols=325 Identities=14% Similarity=0.109 Sum_probs=146.9
Q ss_pred chhhHHHHHhhhhhcchhcchHHHHh-hhC--chHHHHHHHHHHHHHHHHHHHHHHhh-hccCCcccccHHHHHHHHhcc
Q 036096 31 KWWYSAFHNVTAMVGAGVLGLPYAMS-EIG--WGPGIAVIVLSWIITLYTLWQMVEMH-EMVPGKRFDRYYELGQHAFGE 106 (440)
Q Consensus 31 s~~~~~~~l~~~~iG~GiL~lP~a~~-~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~~~~y~~~~~~~~G~ 106 (440)
.....-+.+..--.|+|-|-.|-... ++| |+++.+..++.++.-- ++.-.+ .+.++ ++++++++. ||
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglP----lLgiiava~~~g----~~~~l~~rv-~~ 79 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLP----VLTVVALAKVGG----GVDSLSTPI-GK 79 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHH----HHHHHHHhhcCC----CHHHHhhhc-ch
Confidence 34566788888899999999985533 455 5666666555544332 221111 11222 678888775 66
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhh----hCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 036096 107 KLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDT----VCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAA 182 (440)
Q Consensus 107 ~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 182 (440)
+.+..+..+ +.+ ..| =+..+-++...-.+. +.++ +..+...+.+++..+.+.+++.|+ |-...+.-+-
T Consensus 80 ~f~~~f~~~-i~l-~IG----P~~aiPRtaavsfEm~i~p~~~~-~~~~~~ifs~iFF~i~~~l~l~p~-klvd~iGK~L 151 (439)
T PRK15433 80 VAGVLLATV-CYL-AVG----PLFATPRTATVSFEVGIAPLTGD-SALPLFIYSLVYFAIVILVSLYPG-KLLDTVGNFL 151 (439)
T ss_pred HHHHHHHHH-HHH-HHh----hccccCCccccchhheeeccCCc-ccHHHHHHHHHHHHHHHHHHcChh-hHHHHhHHHH
Confidence 667333222 111 111 112222222222221 1111 012223344555555555554442 2222333333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccc--cCCCCccccch---hhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCC
Q 036096 183 AVMSISYSVIAWVACLHKGALPNVDY--GLRASKTTGNV---FNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKP 257 (440)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~ 257 (440)
+-..+..+.++++..+.+...+..++ .+...+...++ .+-..+++...|+-.-...+ ++. ..+|+++..
T Consensus 152 TP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i----~~~--G~~~~~~~~ 225 (439)
T PRK15433 152 APLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAA----RSR--GVTEARLLT 225 (439)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHc--CCCCHHHHH
Confidence 33333333333344443321111011 01111111111 23456677777775432222 221 013333311
Q ss_pred --chhhhhHHHHHHHHHHHhHHhHHHhh---cCCC-chhHHhhCCCC---chHHHHHHHHHHHHHHHHhhccccccHHHH
Q 036096 258 --MWKGVVIAYLLVAFCYFPVAMVGYWA---FGNQ-VEDNVLMSLEK---PRWLIAAANLFVVVHVIGSYQVYAMPVFDM 328 (440)
Q Consensus 258 --~~~~~~~s~~~~~~~y~~~g~~gy~~---fg~~-~~~~il~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 328 (440)
..++-.++......+|...+..|-.. +++. ..++++..... +++...+..+.+.+.++++-.-..+.+.+.
T Consensus 226 k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~ 305 (439)
T PRK15433 226 RYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEF 305 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334567777778888888777644 3322 22344433311 234444555556666666655555555555
Q ss_pred HHHHHhhhcCCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHH
Q 036096 329 LEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLA 393 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~ 393 (440)
+++.+. ..+........+.++.++. -.++.++.+ ....+.++.|..+-+.
T Consensus 306 f~~~~~---------isY~~~v~i~~l~S~~lSn--~G~~~II~~----s~PiL~~iYP~~IvLi 355 (439)
T PRK15433 306 FAQYVP---------LSYRTLVFILGGFSMVVSN--LGLSQLIQI----SVPVLTAIYPPCIALV 355 (439)
T ss_pred HHhhcC---------CcHHHHHHHHHHHHHHHHH--hHHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 555432 1112222333333444432 234555555 3467778888666544
No 94
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.18 E-value=2.1 Score=42.28 Aligned_cols=72 Identities=15% Similarity=0.358 Sum_probs=58.8
Q ss_pred cHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcch
Q 036096 95 RYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNS 174 (440)
Q Consensus 95 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 174 (440)
=..+++++.+|+ .|..+..+...+.|+-++++.....+|++++..+ ..+++.|+.+..++.+.++.. +++.
T Consensus 262 lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-------kisY~~~v~i~~i~S~~ian~-Gl~~ 332 (427)
T PF05525_consen 262 LLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFP-------KISYKVWVIIFTIFSFIIANL-GLDQ 332 (427)
T ss_pred HHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccChHHHHHHHHHHHHHHHHh-CHHH
Confidence 466789999997 7889999999999999999999999999988875 256788888888877777655 3444
Q ss_pred h
Q 036096 175 V 175 (440)
Q Consensus 175 l 175 (440)
+
T Consensus 333 I 333 (427)
T PF05525_consen 333 I 333 (427)
T ss_pred H
Confidence 3
No 95
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=93.78 E-value=7.8 Score=38.47 Aligned_cols=254 Identities=14% Similarity=0.184 Sum_probs=121.6
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHHHHhhhC--chHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc-cccHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIG--WGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKR-FDRYYELGQ 101 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~-~~~y~~~~~ 101 (440)
.++|.=|+++-+..-....++.+.--+....-+.| |+-+++..++.-.++ ...+. .+..+|.. ..+++-..|
T Consensus 51 ~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~---~~f~~--lns~~G~~yhIsFpv~sR 125 (572)
T KOG2466|consen 51 PSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFT---AIFLV--LNSRPGSDYHISFPVLSR 125 (572)
T ss_pred cccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHH---HHHHH--HccCCCcccccceeeeee
Confidence 34566688998888888888888777776666777 344555444322222 22222 22233322 345666666
Q ss_pred HHhcc---chhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCC---------CCCccchhh--HHHHHHHHHHHh
Q 036096 102 HAFGE---KLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPS---------CKDIRLTYF--IMIFASVHFVLS 167 (440)
Q Consensus 102 ~~~G~---~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~---------~~~~~~~~~--~~i~~~i~~pl~ 167 (440)
..||= .++ .+.++.+....+|.. .=..++++..+++..++. .+......+ -.++=++.+|+.
T Consensus 126 ~sFGiygS~~p-Ii~R~vma~vwYg~~---awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~ 201 (572)
T KOG2466|consen 126 SSFGIYGSLWP-IINRVVMACVWYGVN---AWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFY 201 (572)
T ss_pred eehhhhHhHHH-HHHHHHHHHhhhhhh---hhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhee
Confidence 66663 222 344444444444432 223455555555443331 111111222 234445667777
Q ss_pred cCC--CcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccC----CcchHh
Q 036096 168 HLP--SFNSVAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAG----HNVVLE 241 (440)
Q Consensus 168 ~~~--~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~----~~~~~~ 241 (440)
++| +++++-..+.+.+.... +..+++...-.+|.-+-.+ + .....+.......+-.++.++.+ ..|.|.
T Consensus 202 ~~~p~~ir~lf~~ka~~t~fA~-~g~LIw~l~kAhG~G~l~~-~---~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pD 276 (572)
T KOG2466|consen 202 WFPPYKIRHLFTWKAVLTPFAA-FGFLIWLLKKAHGLGHLFD-S---KSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPD 276 (572)
T ss_pred eccHHHhhhHHHHHHhhhHHHH-HHHHHHHHHhcCCcccccc-C---CCcccccchhHHHHHHHHHHHhccchhhccCch
Confidence 765 45555555555544322 1222233323333211111 1 11122222222222233333333 467777
Q ss_pred hhhhCCCCCCCCCCCCchhhh--hHHHHHHHHHHHhHHhHHHhhcCCCchh--HHhhCC
Q 036096 242 IQASIPSTPEKPSKKPMWKGV--VIAYLLVAFCYFPVAMVGYWAFGNQVED--NVLMSL 296 (440)
Q Consensus 242 i~~~m~~~~~~p~~~~~~~~~--~~s~~~~~~~y~~~g~~gy~~fg~~~~~--~il~~~ 296 (440)
..+-- |+|.+......+ .+.+.++..+=++.+..++..||.+.-+ ++++++
T Consensus 277 FsRF~----ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 277 FSRFA----KSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred hHhhc----CCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 77776 777664422211 2333344444444555678889987543 566555
No 96
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=93.57 E-value=4.4 Score=41.47 Aligned_cols=237 Identities=14% Similarity=0.129 Sum_probs=117.1
Q ss_pred ccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh--hccCCcccccHHHHHHHH
Q 036096 27 SRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMH--EMVPGKRFDRYYELGQHA 103 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~--~~~~~~~~~~y~~~~~~~ 103 (440)
.|+..++-..+.+..+.+|++ ++++|......|.-.. .+...++ .....+.-.. ..++ ....+-+|..++-
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~--~~~~~~l---~~~~~~~~~f~Pvf~~-~~v~~~~eYl~~R 117 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYW--FFEWNAL---LSVLLLGWIFIPVFYR-LGVTTMYEYLEKR 117 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHH--HHHHHHH---HHHHhhheEEEEEEEe-cCeeehhHHHHHH
Confidence 577788888888888888886 6899988877774311 1111111 1111111111 1111 2244667888888
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAA 183 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 183 (440)
||++ .|....+...+..+.-...++..=+-.+++.. +++.+...++..++.........++..-+.-.+..
T Consensus 118 f~~~-~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvt--------g~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~ 188 (585)
T KOG2349|consen 118 FGGR-VRYLATLSFILMIFLYLPVDMYAPALAINQVT--------GINLYLIVVILGLICVFYTALGGLKAVIWTDVVQT 188 (585)
T ss_pred hccc-chhhHHHHHHHHHHhheeeeEeehHHHHHHHh--------ccCceeehHHHHHHHHHHHHhcCeeEEEEhhHHHH
Confidence 8875 55666665555544433322222222222222 22333333344445555566677887777777777
Q ss_pred HHHHHHHHHHHHHHHh-cCCCC--------C-----c-cccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCC
Q 036096 184 VMSISYSVIAWVACLH-KGALP--------N-----V-DYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPS 248 (440)
Q Consensus 184 ~~~~~~~~i~~~~~~~-~~~~~--------~-----~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 248 (440)
.+++.....+.+.... .|... + . +...+......-|.-++.....-...++.+.+.. ++.+
T Consensus 189 ~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~V--QR~l-- 264 (585)
T KOG2349|consen 189 VIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIV--QRYL-- 264 (585)
T ss_pred HHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHH--hHHh--
Confidence 7665544433333221 11111 0 0 0111111111223323333334444555555544 4555
Q ss_pred CCCCCCCCCchhhhhHHHHHHHHHHHhHHhHHHhhc
Q 036096 249 TPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAF 284 (440)
Q Consensus 249 ~~~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~f 284 (440)
.-|+.++.++.+........+......+.|...|
T Consensus 265 --sl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~ 298 (585)
T KOG2349|consen 265 --SLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIY 298 (585)
T ss_pred --ccccHHHhhhhhhhhhhHHHHHHHhhcccceeEe
Confidence 3455545557776666666666555555554433
No 97
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=90.29 E-value=7 Score=38.11 Aligned_cols=77 Identities=16% Similarity=0.345 Sum_probs=61.5
Q ss_pred cHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcch
Q 036096 95 RYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNS 174 (440)
Q Consensus 95 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 174 (440)
=..+..++.||+ .|+.+...+..+.|+-++++.....+|++++.++. .++..|+.++.++.+.++.. ++++
T Consensus 264 IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~-------~SY~~~v~if~i~sflvan~-GL~~ 334 (431)
T COG1114 264 ILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK-------LSYKTWVIIFTLISFLVANL-GLEQ 334 (431)
T ss_pred HHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------ccHHHHHHHHHHHHHHHHHh-hHHH
Confidence 466788999997 79899999999999999999999999999988763 56788888888887776655 3444
Q ss_pred hhHHHH
Q 036096 175 VAVVSL 180 (440)
Q Consensus 175 l~~~s~ 180 (440)
+-..|.
T Consensus 335 Ii~isv 340 (431)
T COG1114 335 IIKISV 340 (431)
T ss_pred HHHHHH
Confidence 444333
No 98
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=87.02 E-value=37 Score=34.41 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=80.1
Q ss_pred cccCCchhhHHHHHhhhhhcchhcchH----HH-Hhh--hCc--------hHHHHHHHHHHHHHHHHHHHHHH-----hh
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGLP----YA-MSE--IGW--------GPGIAVIVLSWIITLYTLWQMVE-----MH 85 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP----~a-~~~--~G~--------~~g~i~l~~~~~~~~~s~~~l~~-----~~ 85 (440)
+|.+-|.++-...+..+-+|+|++.-. .. +.+ .|. -.+.....+=+.+..++.+.+.- ..
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFF 150 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheee
Confidence 344566677788888999999987643 11 221 111 01111222222233333332221 11
Q ss_pred hcc--CC-cccccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHH
Q 036096 86 EMV--PG-KRFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASV 162 (440)
Q Consensus 86 ~~~--~~-~~~~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i 162 (440)
.++ |. -+..=++-++++.-|+ .| .++|++..+...+....-+-.....+..-++...+-.++..-+..+++...+
T Consensus 151 y~k~~~~~~ss~l~pl~g~~~~g~-~g-~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~~~~~ 228 (485)
T PF02028_consen 151 YNKGKPLRISSALYPLLGDRINGP-LG-KIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIIIVITV 228 (485)
T ss_dssp HTS---SSGGGGCHHHHHHHHHSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHHHHH
T ss_pred eecCCCCchhhhhhhhcCCcccCc-ch-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 111 11 1112255566666564 67 6677777776666665555555566666666555422211112222333333
Q ss_pred HHHHhcCCCcc-hhhHHHHHHHHHHHHHHHH
Q 036096 163 HFVLSHLPSFN-SVAVVSLAAAVMSISYSVI 192 (440)
Q Consensus 163 ~~pl~~~~~l~-~l~~~s~~~~~~~~~~~~i 192 (440)
++-.+....++ .++++|.+.+.+.+..++.
T Consensus 229 i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~ 259 (485)
T PF02028_consen 229 IFTISAVSGLDKGIKRLSNINVYLAFALLLF 259 (485)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566664 4788888887765544433
No 99
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=85.46 E-value=9.5 Score=37.87 Aligned_cols=65 Identities=14% Similarity=0.279 Sum_probs=53.6
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcC
Q 036096 96 YYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHL 169 (440)
Q Consensus 96 y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 169 (440)
.....++.+|+ +|+.+..+..++.|+-++++.....++.+++..+ .++..|..+..++.++++..
T Consensus 267 l~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 267 LHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CcHHHHHHHHHHHHHHHHHh
Confidence 44568888997 7889999999999999999999999998877653 45677888888888887766
No 100
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=83.36 E-value=50 Score=32.77 Aligned_cols=282 Identities=14% Similarity=0.025 Sum_probs=139.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 036096 107 KLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMS 186 (440)
Q Consensus 107 ~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 186 (440)
..|+.. .+.+.+..+..+..-...=.....+.+++..++....+.....+...++..++..+--.+.......-+.+ .
T Consensus 81 ~~G~~~-~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l-~ 158 (415)
T COG0814 81 YLGKKG-GILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLL-V 158 (415)
T ss_pred HhCcch-HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHH-H
Confidence 455333 44444444444444444444444444444432111122233445555666666665555555555544444 2
Q ss_pred HHHHHHHHHHHHhcCCCCCccccCCCCccccc-hhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHH
Q 036096 187 ISYSVIAWVACLHKGALPNVDYGLRASKTTGN-VFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIA 265 (440)
Q Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s 265 (440)
...++..+....... +..+... ....+.. ..........+-..+.+..--+.+-+ + .+-.|++-.++...+
T Consensus 159 ~~~v~~~~~l~~~~~--~~~~~~~-l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~s-i----~~~~~~~~~~~~~k~ 230 (415)
T COG0814 159 FGKVIYLVLLVVYLI--PHWNPAN-LFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPS-L----VNYMRKNSKKAVRKA 230 (415)
T ss_pred HHHHHHHHHHHHHHh--cccCHHH-HhcccccchhhHHHHHHHhhHHHhhhhCCccchH-H----HHHhccchhHHHHHH
Confidence 333333334334332 2221111 1111111 13344444444444444433333333 3 333333444435555
Q ss_pred HHHHHHHH-HhHHhHHHhhcCCCchhHHhhCCCCchHHHHHHHHHHH--HHHHHhhccccccHHHHHHHHHhh-------
Q 036096 266 YLLVAFCY-FPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVV--VHVIGSYQVYAMPVFDMLEAFLVK------- 335 (440)
Q Consensus 266 ~~~~~~~y-~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~------- 335 (440)
..+..... ++....++..|+.--+..--+-....+-...+...... .+...+++...++.+......+.-
T Consensus 231 ~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~ 310 (415)
T COG0814 231 ILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEG 310 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHh
Confidence 55554444 45566777777653332222222332333333333322 333477788888777554432211
Q ss_pred ---hcCCCcchhhhhhhHHHHHHHHHHHHhhccc-hhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC
Q 036096 336 ---KLHFKPTMILRFLTRTIYVGFTMFIAMTFPF-FGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPR 398 (440)
Q Consensus 336 ---~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~ 398 (440)
..++.+.+..|..........+.+.++..|. +....+.+|++...+.+-++|.+++++-++..
T Consensus 311 ~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~ 377 (415)
T COG0814 311 LADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLI 377 (415)
T ss_pred hhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1112233444666666667777777777775 56777778889999999999999999975543
No 101
>PHA02764 hypothetical protein; Provisional
Probab=77.52 E-value=66 Score=30.47 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=58.2
Q ss_pred ccccCCchhhHHHHHhhhh-hcchhcchHHHHhhh--CchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAM-VGAGVLGLPYAMSEI--GWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQ 101 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~-iG~GiL~lP~a~~~~--G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 101 (440)
..-|+.+.+++.+.-++.+ .|.+ .+.|+-+... |.- .+...++.++++........|...+.|+.+ .-....+
T Consensus 9 GLVREvs~lDAF~~Nl~~m~~Gi~-Is~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAG--GdYVYIS 84 (399)
T PHA02764 9 GIIKSFNILDIFSINLLYMGILSG-ISYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNG--GDYAYIR 84 (399)
T ss_pred CceeeccHHHHHHHHHHhhccchh-HHHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ceEEEhH
Confidence 3467788889888555444 4433 3556533333 322 445566777777777888888777666544 3345588
Q ss_pred HHhccchhhHHHHHHHHHHHH
Q 036096 102 HAFGEKLGLWIIVPQQLLVEV 122 (440)
Q Consensus 102 ~~~G~~~g~~~~~~~~~~~~~ 122 (440)
+++||++| .+..+..++...
T Consensus 85 RAFGP~~G-FLvG~a~WLtl~ 104 (399)
T PHA02764 85 TAFSSKFY-TIFGISLWLTYV 104 (399)
T ss_pred HhhCccHH-HHHHHHHHHHHH
Confidence 99999888 666665555433
No 102
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=75.17 E-value=58 Score=33.08 Aligned_cols=155 Identities=15% Similarity=0.105 Sum_probs=73.8
Q ss_pred CchhhHHHHHhhhhhcchhcchH----HH-Hhhh--Cch--------HHHHHHHHHHHHHHHHHHHHHHhhh-----cc-
Q 036096 30 AKWWYSAFHNVTAMVGAGVLGLP----YA-MSEI--GWG--------PGIAVIVLSWIITLYTLWQMVEMHE-----MV- 88 (440)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP----~a-~~~~--G~~--------~g~i~l~~~~~~~~~s~~~l~~~~~-----~~- 88 (440)
-|...-...+..+-+|+|++..+ .. +.+- |.. .+....++=+.+..++.+.+.-..- ++
T Consensus 88 fs~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf~~rk~ 167 (537)
T COG1292 88 FSTLSWLAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALALAYFHYRKG 167 (537)
T ss_pred cchhHHHHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhheeeEecC
Confidence 34455577888889999987643 21 1111 111 2333344444444455544443221 11
Q ss_pred -CCc-ccccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHH--HHH
Q 036096 89 -PGK-RFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFAS--VHF 164 (440)
Q Consensus 89 -~~~-~~~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--i~~ 164 (440)
|.. ++.=|+-++++.-|+ +| ..+|++-++...+....-+-+....+..-++..++-.+ +......+..+ +++
T Consensus 168 ~pl~lss~l~Pllg~~~~G~-~G-~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~gip~--~~~~q~~iI~vi~~~~ 243 (537)
T COG1292 168 LPLLLSSALYPLLGERIKGP-IG-HAVDILAIIATLFGIATSLGLGALQLTAGLSYLFGIPN--SFAVQAIIIAVITALF 243 (537)
T ss_pred CCchhhhhhhhhhcccccCc-cc-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHH
Confidence 111 112256666665675 78 66677666665555544455555555555555443111 11222222222 223
Q ss_pred HHhcCCCc-chhhHHHHHHHHHHHH
Q 036096 165 VLSHLPSF-NSVAVVSLAAAVMSIS 188 (440)
Q Consensus 165 pl~~~~~l-~~l~~~s~~~~~~~~~ 188 (440)
-.+-...+ |.++..|.+...+...
T Consensus 244 ~~S~~sGv~KGIr~LS~~n~~la~~ 268 (537)
T COG1292 244 TISVWSGLDKGIRVLSNINMVLAFL 268 (537)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333343 5556666666554433
No 103
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=68.63 E-value=1.5e+02 Score=30.53 Aligned_cols=107 Identities=12% Similarity=0.204 Sum_probs=50.6
Q ss_pred HhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCccccC-CCCccccchhhHHHHHHHHHHhccCC-cchHhh
Q 036096 166 LSHLPSFNSVAVVSLAAAVMSISYSVIAWVACLH-KGALPNVDYGL-RASKTTGNVFNFFSALGDVAFAFAGH-NVVLEI 242 (440)
Q Consensus 166 l~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~-~~~~~i 242 (440)
+...|.+++...+.........+.+++..++... .|..++.+.-. ++...-.+..-...+++..+|+.+.- ......
T Consensus 193 ~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~ 272 (523)
T PF00209_consen 193 FGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITY 272 (523)
T ss_dssp TTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHH
T ss_pred HheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEEE
Confidence 4456777777666665544333333333444432 12222211111 01111122334578999999999864 445555
Q ss_pred hhhCCCCCCCCCCCCchhhhhHHHHHHHHHHHhHHh
Q 036096 243 QASIPSTPEKPSKKPMWKGVVIAYLLVAFCYFPVAM 278 (440)
Q Consensus 243 ~~~m~~~~~~p~~~~~~~~~~~s~~~~~~~y~~~g~ 278 (440)
.+.+ |++.+..|...+....-+...++.|+
T Consensus 273 ~Sy~------~~~~n~~~~a~~v~~~~~~~sllag~ 302 (523)
T PF00209_consen 273 GSYN------KFKNNIFRDALIVAFINTLVSLLAGL 302 (523)
T ss_dssp HTTS-------TTS-SHHHHHHHHHHHHHHHHTTGT
T ss_pred cCcC------CCCccccccceEEEcCchhhhHhHHH
Confidence 5543 44556666665555555555444443
No 104
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=65.48 E-value=1.4e+02 Score=29.30 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=37.6
Q ss_pred cHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHH--HHHHHHHHhcCCCc
Q 036096 95 RYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMI--FASVHFVLSHLPSF 172 (440)
Q Consensus 95 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~i~~pl~~~~~l 172 (440)
+..|..++.++| +.++...+...+...+...+...-.+..++.+++ .+.+.+..+ ...+.+.+...++.
T Consensus 65 ~l~~~~r~~~~~-~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g--------~p~~~~v~~~~~~~~~~~~~~~~~y 135 (390)
T TIGR01197 65 DLAEVCREHYPK-VPRITLWILAELAIIATDMAEVIGTAIALNLLSH--------IPLWGGVLITIVDVFLFLFLDKPGL 135 (390)
T ss_pred CHHHHHHHHCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CcHHHHHHHHHHHHHHHHHHHhCCc
Confidence 789999999996 4545555444444444444444333333333321 233333333 22333344444556
Q ss_pred chhhHH
Q 036096 173 NSVAVV 178 (440)
Q Consensus 173 ~~l~~~ 178 (440)
+.+..+
T Consensus 136 r~~E~~ 141 (390)
T TIGR01197 136 RILEAF 141 (390)
T ss_pred eeHHHH
Confidence 655554
No 105
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=64.00 E-value=1.3e+02 Score=30.69 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=36.0
Q ss_pred cHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 036096 95 RYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHD 141 (440)
Q Consensus 95 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~ 141 (440)
...++-....|+|.. ........+..+..+++-++..++..-.+-.
T Consensus 326 p~~~i~~~~lg~k~~-v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGA-VFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred hHHHHHHHhcCCCce-EehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 577888888999866 7778888888888888888888777666554
No 106
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=59.46 E-value=1.9e+02 Score=28.61 Aligned_cols=323 Identities=16% Similarity=0.151 Sum_probs=140.6
Q ss_pred hhHHHHHhhhhhcchhcchHHHHh-hhC--chHHHHHHHHHHHHHHHHHHHHHHhh-hccCCcccccHHHHHHHHhccch
Q 036096 33 WYSAFHNVTAMVGAGVLGLPYAMS-EIG--WGPGIAVIVLSWIITLYTLWQMVEMH-EMVPGKRFDRYYELGQHAFGEKL 108 (440)
Q Consensus 33 ~~~~~~l~~~~iG~GiL~lP~a~~-~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~~~~y~~~~~~~~G~~~ 108 (440)
+..-+.+..-..|+|-+-.|-... ++| ++++....++.++.- =++.-.. ...++ +++++.++. ||+.
T Consensus 8 ~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVgl----PlLgiIa~a~~g~----~~~~l~~~i-~~~f 78 (431)
T COG1114 8 IALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGL----PLLGIIAVALYGG----GVESLATRI-GPWF 78 (431)
T ss_pred HHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhH----HHHHHHHhhccCC----CHHHHhhhc-cchH
Confidence 455666777889999988875432 344 555655555554433 2222111 12222 788888885 6766
Q ss_pred hhHHHHHHHHHHHHH------HHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 036096 109 GLWIIVPQQLLVEVG------VDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAA 182 (440)
Q Consensus 109 g~~~~~~~~~~~~~~------~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 182 (440)
|..+..+.+....-. ..++|=+.++-. .++....+...+.+++..+...+++-++ |-..++.-+-
T Consensus 79 g~~f~~~iyLsIGPffAiPRt~~vsfe~~i~p~--------~~~~~~~~l~ifs~ifF~ia~~~sl~ps-klid~vGk~L 149 (431)
T COG1114 79 GVLFAIAIYLSIGPFFAIPRTGAVSFEVGISPL--------LGDSSLPSLFIFSVIFFAIAYLFSLNPS-KLIDRVGKFL 149 (431)
T ss_pred HHHHHHHHHHHhcccccCCcccchhHHHhhhcc--------cCCCcchHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHH
Confidence 732222211111000 112222211110 0011112234445555555555555442 1112222222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcc--ccCCCCccccchh---hHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCC--
Q 036096 183 AVMSISYSVIAWVACLHKGALPNVD--YGLRASKTTGNVF---NFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSK-- 255 (440)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~-- 255 (440)
+-..++.+.++++..+.....+..+ ..+++.+...++. +-..+++..+|+= .+.+-.++.+- +++++
T Consensus 150 TPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~Fgi----vIv~alk~~g~--~~~~~~~ 223 (431)
T COG1114 150 TPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGI----VIVNALKSKGV--TTKKQII 223 (431)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHH----HHHHHHHHhcc--CcHHHHH
Confidence 2223333333333444332211111 1111112112221 2334455555543 22333344311 12211
Q ss_pred CCchhhhhHHHHHHHHHHHhHHhHHHhhc---CCCch-hHHhhCCCCc---hHHHHHHHHHHHHHHHHhhccccccHHHH
Q 036096 256 KPMWKGVVIAYLLVAFCYFPVAMVGYWAF---GNQVE-DNVLMSLEKP---RWLIAAANLFVVVHVIGSYQVYAMPVFDM 328 (440)
Q Consensus 256 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~f---g~~~~-~~il~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 328 (440)
+...++-.++......+|...+..|-..- ++..+ +.++....+. +....+..+.+.+..+++-.-....+.|.
T Consensus 224 ~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef 303 (431)
T COG1114 224 KYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11224445677777778888877773322 22222 2455443221 22334444555566666555555555566
Q ss_pred HHHHHhhhcCCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHH
Q 036096 329 LEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLA 393 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~ 393 (440)
+.+..++ ..+....++....++++|. -.++.++.+ ....+..+.|..+-+.
T Consensus 304 F~~~~p~--------~SY~~~v~if~i~sflvan--~GL~~Ii~i----svPvL~~iYPiaI~Lv 354 (431)
T COG1114 304 FSKLVPK--------LSYKTWVIIFTLISFLVAN--LGLEQIIKI----SVPVLTAIYPIAIALV 354 (431)
T ss_pred HHHhccc--------ccHHHHHHHHHHHHHHHHH--hhHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 6655441 1222333334444555542 234455544 4567788888665444
No 107
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=49.95 E-value=17 Score=23.01 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHhHHhHHHhhcCCCc
Q 036096 261 GVVIAYLLVAFCYFPVAMVGYWAFGNQV 288 (440)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy~~fg~~~ 288 (440)
+...+..+..++-.+.|...|.+||+..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 3456677777777888888899999654
No 108
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=48.38 E-value=1.7e+02 Score=29.84 Aligned_cols=57 Identities=9% Similarity=0.191 Sum_probs=34.4
Q ss_pred HHHHhhhhhHHhhhhhCC----CCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096 128 YMLTGGQCLKKFHDTVCP----SCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 128 y~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
+.+...|.....+..... +.+...|..|.++.+++-..+....+++.++.++.++-+
T Consensus 405 f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~l 465 (485)
T PF02028_consen 405 FFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGL 465 (485)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444444544444443321 123356777877777766666666788888888887766
No 109
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=48.28 E-value=17 Score=23.31 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=22.4
Q ss_pred hhhhHHHHHHHHHHHhHHhHHHhhcCCCc
Q 036096 260 KGVVIAYLLVAFCYFPVAMVGYWAFGNQV 288 (440)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~gy~~fg~~~ 288 (440)
.+...++.+..++..+.|..-|.+||+..
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 45667777788888888888889999754
No 110
>CHL00020 psbN photosystem II protein N
Probab=46.99 E-value=14 Score=23.24 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHhHHhHHHhhcCCCc
Q 036096 261 GVVIAYLLVAFCYFPVAMVGYWAFGNQV 288 (440)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy~~fg~~~ 288 (440)
+...+..+..++..+.|..-|.+||+..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 4566777777777778888888999754
No 111
>PLN02680 carbon-monoxide oxygenase
Probab=46.33 E-value=2.2e+02 Score=25.63 Aligned_cols=96 Identities=18% Similarity=0.270 Sum_probs=59.9
Q ss_pred chhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHHHHHHHHHHHhHHhHHHhhcCCCchhHHhhCCC
Q 036096 218 NVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLE 297 (440)
Q Consensus 218 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~ 297 (440)
++-.+...++.+.. .+..... ++.. +.+ ++.+|.+....-....+...+|+.....+.++ .++.+-++
T Consensus 48 n~HPlLM~~Gfi~l--~geAIL~--yr~~----~~~--k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfyS 115 (232)
T PLN02680 48 NVHPVLMVIGLVLL--NGEAMLA--YKTV----PGT--KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYS 115 (232)
T ss_pred echHHHHHHHHHHH--HHHHHhc--cccc----ccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCcccccc
Confidence 45556666665442 2222222 3333 222 34458888888888888888888664444443 34444445
Q ss_pred CchHHHHHHHHHHHHHHHHhhccccccH
Q 036096 298 KPRWLIAAANLFVVVHVIGSYQVYAMPV 325 (440)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 325 (440)
-++|+....-.++.++....+..+.+|-
T Consensus 116 lHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 116 LHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5788888888888888888877766664
No 112
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=43.04 E-value=3.7e+02 Score=27.12 Aligned_cols=160 Identities=14% Similarity=0.124 Sum_probs=72.1
Q ss_pred cCCchhhHHHHHhhhhhcchhcch----HHH-Hhh--hCchH---------HHHHHHHHHHHHHHHHHHHHHh---hhcc
Q 036096 28 RNAKWWYSAFHNVTAMVGAGVLGL----PYA-MSE--IGWGP---------GIAVIVLSWIITLYTLWQMVEM---HEMV 88 (440)
Q Consensus 28 ~~~s~~~~~~~l~~~~iG~GiL~l----P~a-~~~--~G~~~---------g~i~l~~~~~~~~~s~~~l~~~---~~~~ 88 (440)
.+-|..+-...+..+-+|+|++.- |.. +.+ .|.-+ +.....+=+-+..++.+.+.-. ...+
T Consensus 35 PefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~~~ 114 (453)
T TIGR00842 35 PEFSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYFHV 114 (453)
T ss_pred CCCcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhhe
Confidence 334555667788888999998764 322 211 12110 1111222233333443333322 1112
Q ss_pred CCcccccHHHHHHHHhccc----hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHH
Q 036096 89 PGKRFDRYYELGQHAFGEK----LGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHF 164 (440)
Q Consensus 89 ~~~~~~~y~~~~~~~~G~~----~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 164 (440)
++++..+..+..+-.+|+| .| .++|+...+...+....-+-.....+..-++..++-.++......++.....++
T Consensus 115 rk~~~~~iss~~~pllG~~~~g~~g-~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~gi~~~~~~~~~ii~~i~~~f 193 (453)
T TIGR00842 115 RKGLPLRLSSALVPLLGERVNGPIG-KAIDIMALVATLFGVATSLGLGAPQINAGLSALFGIPDSFWLQALIILCVTALA 193 (453)
T ss_pred ecCCCCchhhhhhcccCCcccCccH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 2333445666666666643 45 455665555554444444444444454555544432221111222222222233
Q ss_pred HHhcCCCc-chhhHHHHHHHHHHHH
Q 036096 165 VLSHLPSF-NSVAVVSLAAAVMSIS 188 (440)
Q Consensus 165 pl~~~~~l-~~l~~~s~~~~~~~~~ 188 (440)
-.+....+ |.+|++|.+.+.+.+.
T Consensus 194 ~~S~~~Gl~kGIk~LS~~n~~l~~~ 218 (453)
T TIGR00842 194 CISVASGVGKGIKILSNINMALAFL 218 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 4556666666654443
No 113
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=41.86 E-value=4.5e+02 Score=27.80 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=33.5
Q ss_pred CchhhHHHHHhhhhhcchhcc-hHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 036096 30 AKWWYSAFHNVTAMVGAGVLG-LPYAMSEIGWGPGIAVIVLSWIITLYTLW 79 (440)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~-lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ 79 (440)
.+..+-.+..++-.+|-|-.= .|+...+-|....++-.+++.++...-..
T Consensus 38 ~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~ 88 (629)
T KOG3660|consen 38 KSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLF 88 (629)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHH
Confidence 377889999999999999655 99986666654344444444444444333
No 114
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=40.58 E-value=95 Score=27.10 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=45.0
Q ss_pred hhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC----------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036096 367 FGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPR----------RFSLSWITNWFCIIVGVALMILAPIGGLRALIL 431 (440)
Q Consensus 367 ~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~g~~~~i~~ii~ 431 (440)
+..-.-+.|++.++-+.-++|+...+..+|+. .+|.......+...+|++..+++..-+...+.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455567888888999999999999988763 234455666666677777666666666555543
No 115
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.91 E-value=5e+02 Score=26.07 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhHHhHHHh
Q 036096 264 IAYLLVAFCYFPVAMVGYW 282 (440)
Q Consensus 264 ~s~~~~~~~y~~~g~~gy~ 282 (440)
....++..+.++.|..||.
T Consensus 559 Ym~~f~~~lgim~Gtigy~ 577 (593)
T KOG1277|consen 559 YMAVFCYALGLMCGTIGYV 577 (593)
T ss_pred HHHHHHHHHHHHHhhHhhh
Confidence 5566777777777777774
No 116
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=32.57 E-value=5.8e+02 Score=26.43 Aligned_cols=85 Identities=7% Similarity=0.012 Sum_probs=39.3
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhh-----hCCCCC-CccchhhHH-HHHHHHHHHhcCCCcchhh
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDT-----VCPSCK-DIRLTYFIM-IFASVHFVLSHLPSFNSVA 176 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~-i~~~i~~pl~~~~~l~~l~ 176 (440)
.|..++..++.+......+++..+.+...++.+-.+-.+ .+...+ ..+.+...+ +..++...+.+..+++.+.
T Consensus 308 ~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~ 387 (557)
T TIGR00906 308 VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALV 387 (557)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 343344455555555556666666666666655555432 111111 222233322 2333333334444566666
Q ss_pred HHHHHHHHHHHH
Q 036096 177 VVSLAAAVMSIS 188 (440)
Q Consensus 177 ~~s~~~~~~~~~ 188 (440)
....++..+...
T Consensus 388 ~l~sig~ll~y~ 399 (557)
T TIGR00906 388 DLLSIGTLLAYS 399 (557)
T ss_pred HHHHHHHHHHHH
Confidence 655556554433
No 117
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=29.33 E-value=1.8e+02 Score=24.07 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=45.4
Q ss_pred chhhhhHHHHHHHHHHHhHHhHHHhhcCCCchhHHhhCCCCchHHHHHHHHHHHHHHHHhhccccccH
Q 036096 258 MWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPV 325 (440)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 325 (440)
..|.+....-....+..++|+.....+-++. +..+-++-.+|+..+.-.++.++.+..+....+|-
T Consensus 39 ~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 39 VQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3377888888888888888885554444333 33333444688888887888888887776666665
No 118
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=29.16 E-value=3.9e+02 Score=24.38 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=29.9
Q ss_pred CchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhh
Q 036096 298 KPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKK 336 (440)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 336 (440)
..+....-.++...+.+..+.|...+=....+...+.++
T Consensus 74 ~~E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~~ 112 (249)
T CHL00182 74 PGEYFFSSIKISFYTGLLISSPFIIYQIILFILPGLTKK 112 (249)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 345666778899999999999998887777777666544
No 119
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.23 E-value=4.3e+02 Score=23.53 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=45.9
Q ss_pred hhhhhHHHHHHHHHHHhHHhHHHhhcCCCchhHHhhCCCCchHHHHHHHHHHHHHHHHhhccccccH
Q 036096 259 WKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPV 325 (440)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 325 (440)
.|.+....-....+..++|+.....+-++.+.++.+-++.++|.....-.+..++.+..+....+|-
T Consensus 57 ~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 57 LKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4778888888888888888655444444433344444555788888887888888888876666663
No 120
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=28.15 E-value=3.5e+02 Score=22.49 Aligned_cols=20 Identities=5% Similarity=0.074 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHHHhcC
Q 036096 378 AFAPTTYYIPCIIWLAIYKP 397 (440)
Q Consensus 378 ~~~~l~~ilP~l~~~~~~~~ 397 (440)
....+.-++|+++.++.+-+
T Consensus 70 ~~~l~~~vlP~~~l~~~~i~ 89 (156)
T PF08019_consen 70 LWLLLLGVLPALLLWRVRIK 89 (156)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33445556788887776543
No 121
>PRK09950 putative transporter; Provisional
Probab=27.43 E-value=6.9e+02 Score=25.62 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=79.7
Q ss_pred ccCCchhhHHHHHhhhhhcchhcch----HHH-Hhh--hCch--------HHHHHHHHHHHHHHHHHHHHHH---hh-hc
Q 036096 27 SRNAKWWYSAFHNVTAMVGAGVLGL----PYA-MSE--IGWG--------PGIAVIVLSWIITLYTLWQMVE---MH-EM 87 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~l----P~a-~~~--~G~~--------~g~i~l~~~~~~~~~s~~~l~~---~~-~~ 87 (440)
+.+-|.++-...+..+-+|+|++.- |.. +.+ .|.- .+...-.+=+.+..++.+.+.- +. ..
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~ 160 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFH 160 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444556667788888899998763 322 211 1210 1122223333333343333322 11 11
Q ss_pred cCCcccccHHHHHHHHhccc----hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHH
Q 036096 88 VPGKRFDRYYELGQHAFGEK----LGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVH 163 (440)
Q Consensus 88 ~~~~~~~~y~~~~~~~~G~~----~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 163 (440)
+++++..+..+..+-.+|+| .| .++|+...+...+....-+-.....+..-++..++-.++......++....++
T Consensus 161 ~rk~~pl~iss~~~pllG~~~~g~~G-~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~vi~~i 239 (506)
T PRK09950 161 VRKNKGLSLSGIIAAITGVKPQGPWG-RLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNNFTVQAFVILLSGVI 239 (506)
T ss_pred hhcCCCCchHHhhHhhcCCCCCCcch-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 12333446677777777643 45 56676666665555555555555555555555544222222222222333334
Q ss_pred HHHhcCCCc-chhhHHHHHHHHHHHHH
Q 036096 164 FVLSHLPSF-NSVAVVSLAAAVMSISY 189 (440)
Q Consensus 164 ~pl~~~~~l-~~l~~~s~~~~~~~~~~ 189 (440)
+-++....+ |.+|++|.+.+.+.+..
T Consensus 240 f~~S~~~Gl~kGIk~LS~~N~~la~~l 266 (506)
T PRK09950 240 FCLSSYIGIDNGLQRLSKMVGWGAFLF 266 (506)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445555555 55677777776654443
No 122
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=27.28 E-value=1.3e+02 Score=27.16 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 036096 403 SWITNWFCIIVGVALMILAPIG 424 (440)
Q Consensus 403 ~~~~~~~~~~~g~~~~~~g~~~ 424 (440)
.+|+.|+++++|+++.+-|++.
T Consensus 222 q~wLwwi~~vlG~ll~lr~~i~ 243 (262)
T KOG4812|consen 222 QYWLWWIFLVLGLLLFLRGFIN 243 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999999998888854
No 123
>PRK09928 choline transport protein BetT; Provisional
Probab=25.81 E-value=8.4e+02 Score=26.07 Aligned_cols=140 Identities=7% Similarity=0.039 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Q 036096 60 WGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKF 139 (440)
Q Consensus 60 ~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~ 139 (440)
++++...++..+++...+.++...-.....+.-..+.+......+.......+..+...+..+.+.+.-.=..+-.++.+
T Consensus 358 lvPsl~~~~WfsIfGgsal~l~~~g~~~l~~~~~~~~~~alf~~l~~lP~~~i~~~l~~il~~iFfvTSaDS~s~Vla~l 437 (679)
T PRK09928 358 IIPFTFTLLWLSIFGNSALYEIIHGNAAFAEEAMAHPERGFYSLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGNF 437 (679)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHcCCccHHHHhhcchhhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q ss_pred hhhhC---CCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 036096 140 HDTVC---PSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIAWVACLHK 200 (440)
Q Consensus 140 ~~~~~---~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~ 200 (440)
...-. .+.+.+.|.+|.++.+++-+.+.....++.++..++++-+ -+.++++.+..+..+
T Consensus 438 ts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~al-Pf~~I~ll~~~sl~k 500 (679)
T PRK09928 438 TSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGL-PFSFVIFFVMAGLYK 500 (679)
T ss_pred HcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
No 124
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=22.49 E-value=90 Score=26.57 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=20.9
Q ss_pred HHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhHHHHHHHHHHHhHHhHHH
Q 036096 226 LGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVGY 281 (440)
Q Consensus 226 ~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy 281 (440)
++.+.++++- +-.+-|++++|+|+++-+.+....-......+-.+.++..|
T Consensus 19 ~~a~al~~e~-----~~~~im~r~Pr~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f 69 (182)
T PF00689_consen 19 LPALALGFEP-----PDPDIMKRPPRDPNEPLINKRLLRRILIQGLIMAAACFFAF 69 (182)
T ss_dssp HHHHHGGGSS------STTGGGS---TTTS-SSSHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCc-----chhhhhhccccccchhhccHHhHhHHHHHHHHHHHHHHHHH
Confidence 3344455543 33445655556666655555544433333333333333333
No 125
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=21.89 E-value=2.6e+02 Score=22.27 Aligned_cols=11 Identities=18% Similarity=0.171 Sum_probs=4.2
Q ss_pred HHHHhhhccCC
Q 036096 429 LILEAKSFKFY 439 (440)
Q Consensus 429 ii~~~~~~~~~ 439 (440)
++++.++-++|
T Consensus 46 ll~~i~~~~~F 56 (136)
T PF11188_consen 46 LLRNIQKGKPF 56 (136)
T ss_pred HHHHHHCCCcc
Confidence 33333333333
No 126
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=20.87 E-value=6.5e+02 Score=23.01 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=29.8
Q ss_pred CCCCCCCchhhhhHHHHHHHHHHHhHHhHHHhhcCCCchhHHhhCCCC-chHHHHHHH
Q 036096 251 EKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEK-PRWLIAAAN 307 (440)
Q Consensus 251 ~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~-~~~~~~~~~ 307 (440)
++|+ +++.+.+...+..++|...-..++-.+++.. +.++...++ .+|+..+..
T Consensus 22 ~~P~---lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p~wl~wl~~ll~ 75 (251)
T PRK04949 22 LQPG---LRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLPDWLSWLSYLLW 75 (251)
T ss_pred cCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCccHHHHHHHHHH
Confidence 5664 4478888888888888777555554444322 333333443 244444433
No 127
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=20.64 E-value=8.3e+02 Score=25.13 Aligned_cols=61 Identities=8% Similarity=0.143 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhhhHHhhhhhCC----CCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096 124 VDIMYMLTGGQCLKKFHDTVCP----SCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 124 ~~~~y~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
.+..+.+...|....++..... +.+.+.|..|.++.+++-..+.+..+++.++..+++..+
T Consensus 414 ~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~ii~al 478 (537)
T COG1292 414 VIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAAIITAL 478 (537)
T ss_pred HHHHHHhhccchHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 3444566667776666664432 223456778888777776666667778888887777665
No 128
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.41 E-value=2.6e+02 Score=22.13 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=9.7
Q ss_pred hhhHHHHHhhhhhcchhcchHH
Q 036096 32 WWYSAFHNVTAMVGAGVLGLPY 53 (440)
Q Consensus 32 ~~~~~~~l~~~~iG~GiL~lP~ 53 (440)
|..-...+.=..+|+..+.+..
T Consensus 41 wK~I~la~~Lli~G~~li~~g~ 62 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGL 62 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4333344444444554444443
No 129
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.16 E-value=1.4e+03 Score=26.63 Aligned_cols=22 Identities=5% Similarity=0.285 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHhHHhHHHhh
Q 036096 262 VVIAYLLVAFCYFPVAMVGYWA 283 (440)
Q Consensus 262 ~~~s~~~~~~~y~~~g~~gy~~ 283 (440)
......+++.+|++++++.|..
T Consensus 25 ~~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 25 ALLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 4455677778888888888865
Done!