Query 036096
Match_columns 440
No_of_seqs 129 out of 1300
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 15:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.9 8.2E-20 2.8E-24 181.7 28.4 358 25-399 5-380 (445)
2 3gia_A Uncharacterized protein 99.8 2.1E-16 7.3E-21 157.0 29.9 349 26-399 4-370 (444)
3 4djk_A Probable glutamate/gamm 99.7 1.2E-13 4.1E-18 139.7 35.1 291 25-331 8-318 (511)
4 2jln_A MHP1; hydantoin, transp 98.9 4.6E-06 1.6E-10 83.3 31.5 292 26-334 23-331 (501)
5 3dh4_A Sodium/glucose cotransp 98.3 0.00091 3.1E-08 67.2 30.9 150 27-189 19-170 (530)
6 2xq2_A Sodium/glucose cotransp 98.0 0.02 6.8E-07 58.3 33.0 150 27-189 48-199 (593)
7 2a65_A Leutaa, Na(+):neurotran 91.6 11 0.00038 37.1 35.8 116 163-286 178-308 (519)
8 2wsw_A BCCT family betaine/car 74.8 60 0.0021 31.7 14.0 164 26-191 87-276 (509)
9 4ain_A Glycine betaine transpo 65.4 1.1E+02 0.0037 30.1 19.1 157 26-184 92-271 (539)
10 3tx3_A Uncharacterized protein 21.9 3.9E+02 0.013 23.1 9.7 32 251-285 25-56 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.86 E-value=8.2e-20 Score=181.72 Aligned_cols=358 Identities=16% Similarity=0.082 Sum_probs=221.2
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHh
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAF 104 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 104 (440)
+++|+.+.++..+..+++++|+|++.+|....+.|. .+++..++.+++.......+.|...+.|..+ +..++.++.+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~ 81 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF 81 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence 356889999999999999999999999998888885 4777788888888889999999888777654 7788899999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096 105 GEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 105 G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
||++| ++..+..++.......++....++++..+++... +.+....+ .+..+++.-....++.+....++.+...
T Consensus 82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~in~~g~~~~~~~~~~~~~ 156 (445)
T 3l1l_A 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---DPWVLTIT-CVVVLWIFVLLNIVGPKMITRVQAVATV 156 (445)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG---SHHHHHHH-HHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc---ccHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 99888 7788888887777777777777777766554321 10111111 1112222223334567777777766665
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhH
Q 036096 185 MSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVI 264 (440)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~ 264 (440)
..+..+++..+......+.++....++ .....++.++..++...+|+|.|++......+|+ |||+| +.+|++..
T Consensus 157 ~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~~ 230 (445)
T 3l1l_A 157 LALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIG 230 (445)
T ss_dssp HHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHHH
Confidence 544433333333222222222111111 1112235678899999999999999999999999 99976 78999999
Q ss_pred HHHHHHHHHHhHHhHHHhhcCCCch----hH---HhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhhc
Q 036096 265 AYLLVAFCYFPVAMVGYWAFGNQVE----DN---VLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKL 337 (440)
Q Consensus 265 s~~~~~~~y~~~g~~gy~~fg~~~~----~~---il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 337 (440)
+...+.++|.+..+......+.+.. ++ +..... .++...+..+...++.+.+.....+...+.....-+++.
T Consensus 231 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~ 309 (445)
T 3l1l_A 231 GVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL 309 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999998877766654321 11 111111 133444555666666666655555555555444433321
Q ss_pred ------CC-CcchhhhhhhHHHHHHHHHHHHhhcc----chhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 036096 338 ------HF-KPTMILRFLTRTIYVGFTMFIAMTFP----FFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRR 399 (440)
Q Consensus 338 ------~~-~~~~~~~~~~~~~~~~~~~~ia~~~p----~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~~ 399 (440)
+. +++.+.+.+.....+.....+....| .++.+.++.+ ....+.|.++++.+++.+++++
T Consensus 310 lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 310 FPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp SCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred CcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence 01 11222333222222222222211122 3555555544 3457889999999999887654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.77 E-value=2.1e-16 Score=156.97 Aligned_cols=349 Identities=13% Similarity=0.076 Sum_probs=217.0
Q ss_pred cccCCchhhHHHHHhhhhhcchhcchHHH-HhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHh
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGLPYA-MSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAF 104 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 104 (440)
++|+.+.++..+..+++++|+|++..|.. .+..|. ..++..++.+++.......+.|...+.|..+ +..++.++.+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G--g~y~~~~~~~ 80 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA--GPIAFIHKAI 80 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT--THHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--cHHHhHHHHh
Confidence 47889999999999999999999998754 556665 5777788889999999999999888787654 6788999999
Q ss_pred ccch-hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhH-H--HHHHHHHHHhcCCCcchhhHHHH
Q 036096 105 GEKL-GLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFI-M--IFASVHFVLSHLPSFNSVAVVSL 180 (440)
Q Consensus 105 G~~~-g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~--i~~~i~~pl~~~~~l~~l~~~s~ 180 (440)
||++ +.. ..+..++........+....++++..+++.. +...+. + +..++++-....++.+....++.
T Consensus 81 G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~ 152 (444)
T 3gia_A 81 GDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINAP-------INTFNIAITEIGIVAFFTALNFFGSKAVGRAEF 152 (444)
T ss_dssp CSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9863 313 3456666666666777777777777665431 112221 1 12222223334456777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchh
Q 036096 181 AAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWK 260 (440)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~ 260 (440)
+.....+..+++.++..+...++++.++ ...+.++.++..++....|+|.|++.+....+|+ |||+| +.+|
T Consensus 153 ~~~~~~i~~~~~~ii~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P~r-~ip~ 223 (444)
T 3gia_A 153 FIVLVKLLILGLFIFAGLITIHPSYVIP----DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENPKK-NVPR 223 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCGGGTSC----CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhhcCC----CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCccc-chhH
Confidence 6666554444433333333332222221 1223456678899999999999999999999999 99976 7899
Q ss_pred hhhHHHHHHHHHHHhHHhHHHhhcCCCc-----hhHHhhCCCC--chHHHHHHHHHHHHHHHHhhccccccHHHHHHHHH
Q 036096 261 GVVIAYLLVAFCYFPVAMVGYWAFGNQV-----EDNVLMSLEK--PRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFL 333 (440)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy~~fg~~~-----~~~il~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 333 (440)
++..+..++.++|.+..+......+.+. +.+......+ .++...+......++.+.+.....+...+.+...-
T Consensus 224 ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a 303 (444)
T 3gia_A 224 AIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLA 303 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998777655544221 0111110100 12333445555556666665555555555554444
Q ss_pred hhhc------CCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 036096 334 VKKL------HFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRR 399 (440)
Q Consensus 334 ~~~~------~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~~ 399 (440)
+++. +.+++.+.+...-.. .++.++.. ..+++.+.++.+ .+..+.|.++++.+++.+|+++
T Consensus 304 ~dg~lP~~f~~~~~~~P~~a~~~~~--~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~r~~~~ 370 (444)
T 3gia_A 304 KDGELPEFFERKVWFKSTEGLYITS--ALGVLFAL-LFNMEGVASITS--AVFMVIYLFVILSHYILIDEVG 370 (444)
T ss_dssp HHSSCCSSCCTTSCCSCTHHHHHHH--HHHHHHHH-HSCHHHHHHHHH--HHHHHHHHHHHHHHHHTHHHHC
T ss_pred HCCCCCHHHhCCCCCCCcHHHHHHH--HHHHHHHH-HcCHHHHHHHHH--HHHHHHHHHHHHHHHHhhhcCC
Confidence 3321 111112222222111 12222222 246777777644 3457888888888888765543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.68 E-value=1.2e-13 Score=139.65 Aligned_cols=291 Identities=9% Similarity=0.038 Sum_probs=164.6
Q ss_pred ccccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHH-HHHHHHHHHhhh--ccCCcccccHHHHHH
Q 036096 25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIIT-LYTLWQMVEMHE--MVPGKRFDRYYELGQ 101 (440)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~-~~s~~~l~~~~~--~~~~~~~~~y~~~~~ 101 (440)
+.+|+.+.++.++..+++++| +.++|. .+..|.. .++..++.+++. ......+.|... ..| .+ +.....+
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G--G~y~~~~ 80 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG--GVFAWVS 80 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC--ChhhhHH
Confidence 457889999999999999985 677886 3566642 333333333333 337778888877 788 65 7788999
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh--hhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHH
Q 036096 102 HAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFH--DTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVS 179 (440)
Q Consensus 102 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 179 (440)
+.+||++| ++..+..++.......++....++.+..++ +.+ +.+.+...... +..++++-+...+..+....++
T Consensus 81 ~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~-~~~~~~~~~in~~g~~~~~~~~ 156 (511)
T 4djk_A 81 NTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILKWPAL--NEDPITKTIAA-LIILWALALTQFGGTKYTARIA 156 (511)
T ss_dssp HHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGG--TSCSSHHHHHH-HHHHHHHHHHHHTCSSSHHHHT
T ss_pred hhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--ccCcHHHHHHH-HHHHHHHHHHHHhChHHHHHHH
Confidence 99999888 777888887777666666666666665442 111 11111111111 1222222233345666666666
Q ss_pred HHHHHHHHH-HHHHHHHHHHh---cCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCC
Q 036096 180 LAAAVMSIS-YSVIAWVACLH---KGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSK 255 (440)
Q Consensus 180 ~~~~~~~~~-~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~ 255 (440)
.+.....+. .+++.++..+. .+...+.+.+.....+.....+...++...+|+|.|.+......+|+ |||+|
T Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~----k~P~k 232 (511)
T 4djk_A 157 KVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEM----SNPGR 232 (511)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSS----SCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhc----cCccc
Confidence 655432111 11111222221 11111111111111011111234566788999999999999999999 99987
Q ss_pred CCchhhhhHHHHHHHHHHHhHHhHHHhhcCCCch---h-------HHhhCCC-CchHHHHHHHHHHHHHHHHhhcccccc
Q 036096 256 KPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVE---D-------NVLMSLE-KPRWLIAAANLFVVVHVIGSYQVYAMP 324 (440)
Q Consensus 256 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~---~-------~il~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~ 324 (440)
+.+|++..+..+++++|++..+......+++.. + ....+.+ ...+...+..+...++.+.+.......
T Consensus 233 -~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (511)
T 4djk_A 233 -DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVG 311 (511)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999998877666654321 1 1222332 024555566666666666665444444
Q ss_pred HHHHHHH
Q 036096 325 VFDMLEA 331 (440)
Q Consensus 325 ~~~~~~~ 331 (440)
..+.+..
T Consensus 312 ~sR~l~a 318 (511)
T 4djk_A 312 PSRGMYV 318 (511)
T ss_dssp HHHHTCH
T ss_pred HHHHHHH
Confidence 4444333
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.87 E-value=4.6e-06 Score=83.33 Aligned_cols=292 Identities=11% Similarity=0.043 Sum_probs=157.1
Q ss_pred cccCCchhhHHHHHhhhhhcchhcchHHHHhhhCc--hHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHH
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGW--GPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHA 103 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~--~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 103 (440)
++|+.++++-...-.+..++.+.+.+...+.. |. ..+++..++..++......+......+.. .++.++.|..
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~-GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~G----l~~~v~~R~~ 97 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS-SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG----INFTVAARMP 97 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC----CCHHHHTTTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC----CChhhhhHhh
Confidence 35667888888888888888887777665554 53 44555555544444444444444444332 2689999999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCcc-chhhHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 036096 104 FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIR-LTYFIMIFASVHFVLSHLPSFNSVAVVSLAA 182 (440)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 182 (440)
||++ |..+..+...+..++.........++.+..+++...+ .+ .....+++.++.++.. ....+.++.++.+.
T Consensus 98 FG~~-Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g----~~~~~v~~~i~~~l~~~~~-~~G~~~i~~~~~~~ 171 (501)
T 2jln_A 98 FGIR-GSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG----FTNLPLWIVIFGAIQVVTT-FYGITFIRWMNVFA 171 (501)
T ss_dssp SCTT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH
T ss_pred cchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cchHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHH
Confidence 9985 5588888888888898888888888888877654321 12 2444555666666666 44678888777777
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHH-HHhccCCcchHhhhhhCCCCCCCCCC---CC-
Q 036096 183 AVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDV-AFAFAGHNVVLEIQASIPSTPEKPSK---KP- 257 (440)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~faf~~~~~~~~i~~~m~~~~~~p~~---~~- 257 (440)
....++..++..+..+.+.... .+......+ ......+..++... .+.-....+.++..+++ |++++ ++
T Consensus 172 ~p~~~i~~i~~~~~~l~~~g~~-~~~~~~~~~-~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~----~~~~~~~~~~~ 245 (501)
T 2jln_A 172 SPVLLAMGVYMVYLMLDGADVS-LGEVMSMGG-ENPGMPFSTAIMIFVGGWIAVVVSIHDIVKEC----KVDPNASREGQ 245 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC-HHHHTTCCC-SSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTB----CCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCc-chhhhccCC-ccchHHHHHHHHHHHHHHHHHHhccCcccccC----CCCccccccch
Confidence 6644443333333333221110 000000011 11122344443332 11112336778888988 44443 01
Q ss_pred ------chhhhhHHHHHHHHHHHhHHhHHHhhcCCCchhHHhhC-CCCchHHHHHHH-HHHHHHHHHhhc-cccccHHHH
Q 036096 258 ------MWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMS-LEKPRWLIAAAN-LFVVVHVIGSYQ-VYAMPVFDM 328 (440)
Q Consensus 258 ------~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~-~~~~~~~~~~~~-~~~~~~~~~~~p-~~~~~~~~~ 328 (440)
.......+..+...+..++|...-...+......++.. +........+.- +.+.++.+++-- ...++.-..
T Consensus 246 ~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~ 325 (501)
T 2jln_A 246 TKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYT 325 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11223345555555555555543333333333344433 222122122333 444455444433 356666666
Q ss_pred HHHHHh
Q 036096 329 LEAFLV 334 (440)
Q Consensus 329 ~~~~~~ 334 (440)
+.+...
T Consensus 326 l~~~~~ 331 (501)
T 2jln_A 326 LCSTFP 331 (501)
T ss_dssp HHHHST
T ss_pred HHHhCc
Confidence 666643
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.35 E-value=0.00091 Score=67.22 Aligned_cols=150 Identities=16% Similarity=0.134 Sum_probs=82.7
Q ss_pred ccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhc
Q 036096 27 SRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFG 105 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 105 (440)
.|+.+++...+.+..+.+++. ++++|......|+......... ++........+.....+. +..|.+|+.++-||
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~---~~~T~~e~l~~Rfg 94 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEK---GIYTIPEFVEKRFN 94 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHHT---TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHc---CCccHHHHHHHHcC
Confidence 588999999999999988886 6889988778886532211111 111111122222222222 25699999999999
Q ss_pred cchhhHHHHHHHHH-HHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096 106 EKLGLWIIVPQQLL-VEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 106 ~~~g~~~~~~~~~~-~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
++.+ .+..+...+ +.+....+.+...+..++.++ +++....+++..+++........++...+...+..+
T Consensus 95 ~~~~-~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~ 165 (530)
T 3dh4_A 95 KKLK-TILAVFWISLYIFVNLTSVLYLGGLALETIL--------GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 165 (530)
T ss_dssp HHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------TCCHHHHHHHHHHHHHHTTC------CCSHHHHHHH
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 8644 555444332 222222222222333333332 244455556666666777778889999888888887
Q ss_pred HHHHH
Q 036096 185 MSISY 189 (440)
Q Consensus 185 ~~~~~ 189 (440)
++++.
T Consensus 166 im~~g 170 (530)
T 3dh4_A 166 FLVLG 170 (530)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.99 E-value=0.02 Score=58.28 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=81.0
Q ss_pred ccCCchhhHHHHHhhhhhcch-hcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHhc
Q 036096 27 SRNAKWWYSAFHNVTAMVGAG-VLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFG 105 (440)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 105 (440)
.|+.+++...+.+..+.+++. .++.|....+.|+......+. ..+........+..-..+. +..|.+|+.++-||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~---~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK---GIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT---TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC---CCCCcHHHHHHHcc
Confidence 477889999999988888775 578998877788642221111 1111111122222222222 25699999999999
Q ss_pred cchhhHHHHHHHHH-HHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096 106 EKLGLWIIVPQQLL-VEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV 184 (440)
Q Consensus 106 ~~~g~~~~~~~~~~-~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 184 (440)
++.+ .+..+...+ ..+......+...+..++.+++ ++....+++..+++........++...+...+..+
T Consensus 124 ~~~~-~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------i~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~i 194 (593)
T 2xq2_A 124 KKLK-TILAVFWISLYIFVNLTSVLYLGGLALETILG--------IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 194 (593)
T ss_dssp HHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred CchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 7644 444433332 2222222222333444444432 34455555666666777788888888888888777
Q ss_pred HHHHH
Q 036096 185 MSISY 189 (440)
Q Consensus 185 ~~~~~ 189 (440)
+++..
T Consensus 195 iml~~ 199 (593)
T 2xq2_A 195 FLVLG 199 (593)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=91.65 E-value=11 Score=37.13 Aligned_cols=116 Identities=11% Similarity=-0.005 Sum_probs=60.5
Q ss_pred HHHHhcCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHhc-C----CCCCc----cccCCCCccccchhhHHHHHHHHHHh
Q 036096 163 HFVLSHLPSF-NSVAVVSLAAAVMSISYSVIAWVACLHK-G----ALPNV----DYGLRASKTTGNVFNFFSALGDVAFA 232 (440)
Q Consensus 163 ~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~i~~~~~~~~-~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~fa 232 (440)
+.-++..|.+ +.....+.+-+....+.+++..++.... | ..++. .|+++ .-.+..-...+++...|+
T Consensus 178 i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s---~L~~~~vw~~A~gQ~FFS 254 (519)
T 2a65_A 178 INVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFE---KLKDPGVWIAAVGQIFFT 254 (519)
T ss_dssp HHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTT---STTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHH---HhCCHHHHHHHHHHHHHH
Confidence 3445667777 5567777766665444454444554422 1 11111 12221 112334578899999999
Q ss_pred ccCCcchHhhhhhCCCCCCCCCCCCchhhhhHHHHHHHHHHHhHH-----hHHHhhcCC
Q 036096 233 FAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYLLVAFCYFPVA-----MVGYWAFGN 286 (440)
Q Consensus 233 f~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~~~y~~~g-----~~gy~~fg~ 286 (440)
.+.-.-....+... +++|.+..|...+....-+..-++.| ..||.++|.
T Consensus 255 LslG~G~~ity~SY-----~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~ 308 (519)
T 2a65_A 255 LSLGFGAIITYASY-----VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGV 308 (519)
T ss_dssp HTTTSSHHHHHHTT-----SCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCH
T ss_pred hHHHHhHHhhhhcc-----cCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 98755554445543 35555666666544444444433333 345555453
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=74.85 E-value=60 Score=31.69 Aligned_cols=164 Identities=12% Similarity=0.025 Sum_probs=75.8
Q ss_pred cccCCchhhHHHHHhhhhhcchhcch----HHH-Hhh--hC----ch----HHHHHHHHHHHHHHHHHHHH-----HHhh
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGL----PYA-MSE--IG----WG----PGIAVIVLSWIITLYTLWQM-----VEMH 85 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~l----P~a-~~~--~G----~~----~g~i~l~~~~~~~~~s~~~l-----~~~~ 85 (440)
++.+-|..+-...+..+-+|+|++.- |.. +.+ .| -. .+.....+=+.+..++.+.+ ....
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~fwgvaEP~~h~~~pP~~~~~~s~eAa~~Am~~tffHWG~~~WaiYal~~lalayf~ 166 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISSPPFGMEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFF 166 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCSTTCCTTCHHHHHHHHHHHHHHTSHHHHHTTHHHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhhhhhhhhHHHccCCCCCCCCCcHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 44556667778888889999998764 322 221 11 10 01111122122222222222 1211
Q ss_pred h-cc--CCc-ccccHHHHH-HHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHH
Q 036096 86 E-MV--PGK-RFDRYYELG-QHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFA 160 (440)
Q Consensus 86 ~-~~--~~~-~~~~y~~~~-~~~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (440)
. ++ |.. |+.=|+-++ ++..|+ .| .++|++-.+........-+-+....+..-++..++-.++...+..+++..
T Consensus 167 y~r~~~pl~iss~l~PllG~~r~~G~-~G-~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~~~~~qi~ii~vi 244 (509)
T 2wsw_A 167 FVRKMEVIRPSSTLVPLVGEKHVNGL-FG-TVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHTLQLDAIIISCW 244 (509)
T ss_dssp HTSCCCCCSGGGGCHHHHHHHHHHSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred HHcCCCCcchHHHhHhhcCCcccCCc-hh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 1 21 111 123366777 788885 78 45665555444433333333333333433443332111111122222233
Q ss_pred HHHHHHhcCCCc-chhhHHHHHHHHHHHHHHH
Q 036096 161 SVHFVLSHLPSF-NSVAVVSLAAAVMSISYSV 191 (440)
Q Consensus 161 ~i~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~ 191 (440)
.++.-.+....+ |..|++|.+.+.+.+..++
T Consensus 245 t~~~~~Sa~sGl~kGIk~LS~~N~~la~~Ll~ 276 (509)
T 2wsw_A 245 ILLNAICVAFGLQKGVKIASDVRTYLSFLMLG 276 (509)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677 6778888877776554433
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=65.43 E-value=1.1e+02 Score=30.13 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=73.7
Q ss_pred cccCCchhhHHHHHhhhhhcchhcch----HHH-Hhh--hCc-----hHHHHHHHHHHHHHHHHHHHHHHhh---hccCC
Q 036096 26 KSRNAKWWYSAFHNVTAMVGAGVLGL----PYA-MSE--IGW-----GPGIAVIVLSWIITLYTLWQMVEMH---EMVPG 90 (440)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~l----P~a-~~~--~G~-----~~g~i~l~~~~~~~~~s~~~l~~~~---~~~~~ 90 (440)
++.+-|.++-...+..+-+|+|++.- |.. +.+ .|. -.+....++=+.+..++.+.+.-.. ..+++
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk 171 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRV 171 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCT
T ss_pred CCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcC
Confidence 34556667778889999999998753 322 111 111 1122233333334444444333221 11211
Q ss_pred cc-----cccHHHHHHH-HhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCC-CCccchhhHHHHHHHH
Q 036096 91 KR-----FDRYYELGQH-AFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSC-KDIRLTYFIMIFASVH 163 (440)
Q Consensus 91 ~~-----~~~y~~~~~~-~~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~i~ 163 (440)
++ +.=|+-++++ ..|+ +| .++|++-.+...+....-+-+....+..-++..++-. ++......+++...++
T Consensus 172 ~~pl~iss~l~PllG~r~~~G~-~G-~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~~~~~qi~ii~vit~i 249 (539)
T 4ain_A 172 GRKQLLSSAFVPLIGEKGAEGW-LG-KLIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVSVLTLA 249 (539)
T ss_dssp CCCSCTTGGGHHHHHHHHTTSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCSTTTTTHHHHHHHHH
T ss_pred CCCCcHHHHhHhhcCCCccCCc-ch-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Confidence 11 1226666777 6775 78 5667666665554444444444445555555544322 2222222223333334
Q ss_pred HHHhcCCCc-chhhHHHHHHHH
Q 036096 164 FVLSHLPSF-NSVAVVSLAAAV 184 (440)
Q Consensus 164 ~pl~~~~~l-~~l~~~s~~~~~ 184 (440)
.-.+....+ |..+++|.+.+.
T Consensus 250 ~~~Sa~sGl~kGIk~LS~~N~~ 271 (539)
T 4ain_A 250 FIFSAISGVGKGIQYLSNANMV 271 (539)
T ss_dssp HHHHHHC---CCHHHHGGGHCC
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 444555444 445566655554
No 10
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=21.90 E-value=3.9e+02 Score=23.11 Aligned_cols=32 Identities=13% Similarity=0.030 Sum_probs=20.1
Q ss_pred CCCCCCCchhhhhHHHHHHHHHHHhHHhHHHhhcC
Q 036096 251 EKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFG 285 (440)
Q Consensus 251 ~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg 285 (440)
++|+ +++.+.....+..++|.......+..++
T Consensus 25 ~~p~---lr~~vl~Pllinl~L~~~~~~~~~~~~~ 56 (249)
T 3tx3_A 25 RTKG---LRRYVVVPILTNLILFSLAFTWLYGEVD 56 (249)
T ss_dssp TSTT---THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5563 3478888888888887666444433333
Done!