Query 036097
Match_columns 481
No_of_seqs 212 out of 2433
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 09:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 7.2E-21 1.6E-25 170.0 1.8 260 15-353 96-372 (419)
2 KOG4341 F-box protein containi 99.7 2.5E-19 5.5E-24 167.3 -0.9 354 18-462 73-459 (483)
3 PLN00113 leucine-rich repeat r 99.7 2.1E-16 4.5E-21 176.0 11.0 262 135-408 92-367 (968)
4 PLN00113 leucine-rich repeat r 99.6 6.7E-16 1.4E-20 171.9 10.5 307 135-462 235-578 (968)
5 KOG4194 Membrane glycoprotein 99.5 4.5E-15 9.7E-20 144.3 1.9 288 135-436 101-427 (873)
6 PLN03210 Resistant to P. syrin 99.5 2.4E-13 5.1E-18 152.4 11.0 122 136-265 589-714 (1153)
7 KOG4194 Membrane glycoprotein 99.4 4.3E-14 9.2E-19 137.6 -0.2 283 136-435 149-449 (873)
8 PLN03210 Resistant to P. syrin 99.2 1.6E-11 3.4E-16 137.9 9.3 232 136-380 611-880 (1153)
9 KOG4341 F-box protein containi 99.2 1.1E-12 2.4E-17 123.3 -2.5 275 163-465 138-437 (483)
10 KOG0444 Cytoskeletal regulator 99.1 2.3E-13 4.9E-18 133.6 -11.5 81 367-462 289-369 (1255)
11 KOG0444 Cytoskeletal regulator 99.0 1.2E-12 2.6E-17 128.6 -10.3 277 137-438 79-375 (1255)
12 PRK15387 E3 ubiquitin-protein 99.0 1.1E-09 2.5E-14 115.2 9.9 255 136-436 201-456 (788)
13 PRK15387 E3 ubiquitin-protein 98.9 4.4E-09 9.5E-14 110.8 8.5 251 163-462 201-452 (788)
14 PF12937 F-box-like: F-box-lik 98.9 2E-09 4.4E-14 71.8 3.2 37 17-53 1-37 (47)
15 cd00116 LRR_RI Leucine-rich re 98.8 3.3E-09 7.1E-14 102.9 3.5 41 421-463 274-315 (319)
16 KOG0472 Leucine-rich repeat pr 98.6 6.5E-11 1.4E-15 110.9 -12.8 32 424-462 504-535 (565)
17 cd00116 LRR_RI Leucine-rich re 98.6 6.2E-08 1.3E-12 93.9 6.3 56 168-223 3-62 (319)
18 KOG0618 Serine/threonine phosp 98.6 9.8E-09 2.1E-13 106.0 -0.7 166 136-312 91-277 (1081)
19 KOG3207 Beta-tubulin folding c 98.4 2.8E-08 6E-13 94.6 -0.7 193 161-356 119-338 (505)
20 KOG2120 SCF ubiquitin ligase, 98.4 1.1E-07 2.3E-12 86.4 1.9 198 188-459 186-391 (419)
21 PF00646 F-box: F-box domain; 98.4 1.1E-07 2.3E-12 63.8 1.1 37 17-53 3-39 (48)
22 KOG3207 Beta-tubulin folding c 98.4 8.8E-08 1.9E-12 91.3 0.2 131 134-265 144-281 (505)
23 KOG1909 Ran GTPase-activating 98.3 8E-08 1.7E-12 89.1 -0.3 262 110-398 32-329 (382)
24 PRK15370 E3 ubiquitin-protein 98.3 1.5E-06 3.2E-11 92.4 9.1 115 136-265 178-293 (754)
25 KOG0618 Serine/threonine phosp 98.3 7.5E-08 1.6E-12 99.7 -1.6 79 137-222 69-147 (1081)
26 PRK15370 E3 ubiquitin-protein 98.3 6.8E-07 1.5E-11 94.9 5.2 243 163-436 178-426 (754)
27 smart00256 FBOX A Receptor for 98.3 5.2E-07 1.1E-11 58.1 2.5 34 20-53 1-34 (41)
28 KOG0472 Leucine-rich repeat pr 98.2 7.4E-10 1.6E-14 104.0 -17.1 197 151-355 79-308 (565)
29 PF14580 LRR_9: Leucine-rich r 98.1 5.7E-07 1.2E-11 77.9 -0.0 101 137-245 20-124 (175)
30 KOG1909 Ran GTPase-activating 98.0 7E-06 1.5E-10 76.5 4.7 36 273-308 88-129 (382)
31 KOG0617 Ras suppressor protein 98.0 2.2E-07 4.7E-12 77.7 -5.2 137 151-308 44-182 (264)
32 KOG1947 Leucine rich repeat pr 97.9 7.1E-07 1.5E-11 91.7 -4.1 165 135-308 187-371 (482)
33 KOG4237 Extracellular matrix p 97.7 2.4E-06 5.2E-11 80.7 -3.6 234 136-376 67-353 (498)
34 PF14580 LRR_9: Leucine-rich r 97.7 1.2E-05 2.6E-10 69.6 0.9 79 160-244 16-98 (175)
35 PF13855 LRR_8: Leucine rich r 97.6 3.1E-05 6.7E-10 54.7 1.2 59 163-222 1-59 (61)
36 KOG1947 Leucine rich repeat pr 97.5 1.1E-05 2.4E-10 82.9 -1.9 39 15-53 43-81 (482)
37 PF13855 LRR_8: Leucine rich r 97.5 7.9E-05 1.7E-09 52.6 3.1 60 136-199 1-61 (61)
38 KOG4237 Extracellular matrix p 97.5 4.1E-05 8.8E-10 72.6 1.1 82 136-222 91-174 (498)
39 KOG3665 ZYG-1-like serine/thre 97.4 3.6E-05 7.8E-10 81.2 0.1 144 163-307 122-283 (699)
40 KOG1859 Leucine-rich repeat pr 97.4 2.2E-05 4.7E-10 79.9 -1.8 198 109-312 56-292 (1096)
41 KOG2982 Uncharacterized conser 97.3 6.9E-05 1.5E-09 68.5 1.1 190 124-315 58-265 (418)
42 KOG3665 ZYG-1-like serine/thre 97.3 6.2E-05 1.3E-09 79.5 0.4 98 211-308 121-229 (699)
43 KOG4658 Apoptotic ATPase [Sign 97.3 7.2E-05 1.6E-09 81.1 0.4 80 136-220 571-650 (889)
44 KOG0617 Ras suppressor protein 97.2 8.4E-06 1.8E-10 68.4 -5.9 104 136-244 56-160 (264)
45 KOG1259 Nischarin, modulator o 97.2 8.4E-05 1.8E-09 68.0 -0.1 195 134-334 180-410 (490)
46 KOG1259 Nischarin, modulator o 97.2 0.00014 3E-09 66.6 1.0 63 203-265 173-247 (490)
47 KOG2982 Uncharacterized conser 97.0 0.0015 3.2E-08 60.0 5.7 177 274-462 68-256 (418)
48 KOG4658 Apoptotic ATPase [Sign 96.8 0.00028 6.1E-09 76.6 -0.2 124 160-285 542-676 (889)
49 PRK15386 type III secretion pr 96.3 0.012 2.6E-07 57.8 7.6 9 300-308 178-186 (426)
50 COG4886 Leucine-rich repeat (L 96.3 0.0024 5.3E-08 63.8 2.5 144 161-308 114-264 (394)
51 PRK15386 type III secretion pr 96.1 0.013 2.8E-07 57.6 6.7 139 273-435 48-187 (426)
52 PF12799 LRR_4: Leucine Rich r 96.1 0.0034 7.4E-08 40.7 1.8 36 164-200 2-37 (44)
53 KOG1644 U2-associated snRNP A' 95.8 0.017 3.6E-07 50.4 5.0 61 161-222 62-123 (233)
54 KOG0281 Beta-TrCP (transducin 95.7 0.0036 7.7E-08 58.2 0.8 36 14-49 72-111 (499)
55 PLN03150 hypothetical protein; 95.7 0.0083 1.8E-07 63.5 3.3 81 164-245 419-501 (623)
56 COG5238 RNA1 Ran GTPase-activa 95.5 0.021 4.5E-07 52.1 4.8 193 161-353 28-281 (388)
57 KOG2739 Leucine-rich acidic nu 95.4 0.0015 3.2E-08 59.1 -2.9 89 155-245 35-127 (260)
58 KOG1644 U2-associated snRNP A' 95.3 0.045 9.7E-07 47.8 5.9 78 163-245 42-124 (233)
59 KOG2123 Uncharacterized conser 95.2 0.00083 1.8E-08 61.1 -5.1 97 234-330 19-124 (388)
60 COG4886 Leucine-rich repeat (L 95.2 0.0057 1.2E-07 61.1 0.2 163 136-309 116-287 (394)
61 PLN03150 hypothetical protein; 94.9 0.022 4.8E-07 60.3 3.7 104 138-245 420-526 (623)
62 PF12799 LRR_4: Leucine Rich r 94.9 0.012 2.6E-07 38.2 1.0 39 136-178 1-39 (44)
63 PLN03215 ascorbic acid mannose 94.1 0.032 6.8E-07 54.2 2.4 37 16-52 3-40 (373)
64 KOG2739 Leucine-rich acidic nu 93.9 0.012 2.6E-07 53.4 -0.9 54 212-265 43-101 (260)
65 KOG2997 F-box protein FBX9 [Ge 93.6 0.1 2.2E-06 48.6 4.5 35 15-49 105-144 (366)
66 PF07723 LRR_2: Leucine Rich R 93.2 0.11 2.3E-06 29.3 2.6 25 188-212 1-26 (26)
67 KOG3864 Uncharacterized conser 91.7 0.033 7.3E-07 48.6 -1.1 90 154-243 92-185 (221)
68 KOG2123 Uncharacterized conser 91.6 0.0081 1.7E-07 54.9 -5.1 77 161-240 39-123 (388)
69 KOG1859 Leucine-rich repeat pr 91.1 0.01 2.2E-07 61.1 -5.5 101 136-245 187-290 (1096)
70 COG5238 RNA1 Ran GTPase-activa 90.3 0.24 5.1E-06 45.5 2.8 198 110-334 32-283 (388)
71 KOG4579 Leucine-rich repeat (L 90.2 0.04 8.6E-07 45.1 -1.9 62 161-224 51-112 (177)
72 KOG0531 Protein phosphatase 1, 90.1 0.042 9.1E-07 55.3 -2.3 102 159-265 91-196 (414)
73 PF13013 F-box-like_2: F-box-l 87.8 0.47 1E-05 37.4 2.6 30 16-45 21-50 (109)
74 KOG3864 Uncharacterized conser 87.3 0.12 2.7E-06 45.1 -1.0 55 296-353 122-185 (221)
75 KOG0274 Cdc4 and related F-box 87.0 0.26 5.5E-06 51.0 0.9 40 11-50 102-141 (537)
76 PF13504 LRR_7: Leucine rich r 86.3 0.52 1.1E-05 23.5 1.4 14 163-176 1-14 (17)
77 PF13306 LRR_5: Leucine rich r 86.2 0.3 6.5E-06 39.9 0.8 57 161-220 10-66 (129)
78 KOG0531 Protein phosphatase 1, 85.6 0.16 3.4E-06 51.2 -1.4 100 136-245 95-197 (414)
79 KOG0532 Leucine-rich repeat (L 83.0 0.072 1.6E-06 53.6 -4.9 29 257-285 213-242 (722)
80 KOG0532 Leucine-rich repeat (L 82.9 0.19 4.1E-06 50.8 -2.1 100 137-245 144-245 (722)
81 PF00560 LRR_1: Leucine Rich R 82.7 0.91 2E-05 24.3 1.5 16 164-179 1-16 (22)
82 PF13516 LRR_6: Leucine Rich r 82.2 0.95 2.1E-05 24.7 1.5 20 187-206 2-21 (24)
83 smart00367 LRR_CC Leucine-rich 81.6 0.83 1.8E-05 25.6 1.1 17 322-338 1-17 (26)
84 KOG4579 Leucine-rich repeat (L 76.9 0.81 1.8E-05 37.7 0.1 70 126-200 42-113 (177)
85 PF08387 FBD: FBD; InterPro: 71.7 6.1 0.00013 26.3 3.3 38 424-463 13-50 (51)
86 KOG3763 mRNA export factor TAP 65.9 3.4 7.4E-05 41.9 1.7 38 185-222 216-254 (585)
87 PF13306 LRR_5: Leucine rich r 64.5 17 0.00038 29.1 5.5 12 296-307 55-66 (129)
88 smart00368 LRR_RI Leucine rich 64.3 5.8 0.00013 22.6 1.8 21 187-207 2-22 (28)
89 PF09372 PRANC: PRANC domain; 62.1 7.3 0.00016 30.1 2.6 25 15-39 70-94 (97)
90 smart00370 LRR Leucine-rich re 52.9 9.8 0.00021 21.0 1.4 17 163-179 2-18 (26)
91 smart00369 LRR_TYP Leucine-ric 52.9 9.8 0.00021 21.0 1.4 17 163-179 2-18 (26)
92 smart00579 FBD domain in FBox 49.0 28 0.00061 24.9 3.7 40 424-465 4-43 (72)
93 KOG3763 mRNA export factor TAP 48.8 9.7 0.00021 38.8 1.5 61 161-223 216-281 (585)
94 KOG3926 F-box proteins [Amino 33.1 37 0.0008 31.3 2.6 51 13-63 198-255 (332)
95 KOG4408 Putative Mg2+ and Co2+ 28.3 14 0.00031 35.0 -0.8 39 17-55 8-46 (386)
96 smart00364 LRR_BAC Leucine-ric 27.5 37 0.00081 19.1 1.0 17 163-179 2-18 (26)
97 PF01827 FTH: FTH domain; Int 25.8 3.4E+02 0.0074 21.9 7.3 117 88-219 3-124 (142)
98 smart00365 LRR_SD22 Leucine-ri 24.3 53 0.0011 18.4 1.3 14 163-176 2-15 (26)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.2e-21 Score=170.05 Aligned_cols=260 Identities=19% Similarity=0.236 Sum_probs=147.5
Q ss_pred ccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhccCC---eeEeeccchhhHHHHHHhhcCchhhhHHHHHHHHHH
Q 036097 15 DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFP---VLNFDEDLFERELLEMRAARGDVQKFNQARGKLLNY 91 (481)
Q Consensus 15 d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (481)
-.++.|||||+..||+.|+.+|+.+++.|||||.++-+... .++.......+.
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~------------------------ 151 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPD------------------------ 151 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChh------------------------
Confidence 34789999999999999999999999999999997433211 133333332221
Q ss_pred HHHHHHhccCCCCCCCcceeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEc
Q 036097 92 WKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLF 171 (481)
Q Consensus 92 v~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~ 171 (481)
+...+.++. +.-|++-.....+...+. ....++.+++.++|+.. ..+...+-..+..|.+|+.|.|.
T Consensus 152 ~l~~l~~rg---------V~v~Rlar~~~~~prlae--~~~~frsRlq~lDLS~s--~it~stl~~iLs~C~kLk~lSlE 218 (419)
T KOG2120|consen 152 VLGRLLSRG---------VIVFRLARSFMDQPRLAE--HFSPFRSRLQHLDLSNS--VITVSTLHGILSQCSKLKNLSLE 218 (419)
T ss_pred HHHHHHhCC---------eEEEEcchhhhcCchhhh--hhhhhhhhhHHhhcchh--heeHHHHHHHHHHHHhhhhcccc
Confidence 111222221 544444422112221111 11234457888888876 44444555555678888888888
Q ss_pred CeeccCCCCCCCcCCCcceEEEecce-ecChHHHHHHhcCCCccceeEeeeecCcceE-----eecCCCCCcEEEEccCC
Q 036097 172 GCILLEFPGRNSVKLPSLRKLRLAQV-RASDQVIENLVAGCPLIEDLIFEFCEGLKSI-----KLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 172 ~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-----~i~~~~~L~~L~l~~~~ 245 (481)
|..+.+......+.-.+|+.|+|+.+ .++...+..++++|..|.+|+++.|...+.. .-.+ ++|+.|++++|.
T Consensus 219 g~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his-e~l~~LNlsG~r 297 (419)
T KOG2120|consen 219 GLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS-ETLTQLNLSGYR 297 (419)
T ss_pred ccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc-hhhhhhhhhhhH
Confidence 87774433223345567788888776 4566667777778888888888877654432 0012 444444444442
Q ss_pred CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEEechhhhHHhhhcCCcccEEEeccccccccccc----cccc
Q 036097 246 EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQN----IKIS 321 (481)
Q Consensus 246 ~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~----l~~~ 321 (481)
. . +....+..+...||+|.+|+|++ |..++. ....
T Consensus 298 r-------------------n-------------------l~~sh~~tL~~rcp~l~~LDLSD---~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 298 R-------------------N-------------------LQKSHLSTLVRRCPNLVHLDLSD---SVMLKNDCFQEFFK 336 (419)
T ss_pred h-------------------h-------------------hhhhHHHHHHHhCCceeeecccc---ccccCchHHHHHHh
Confidence 0 0 22233445556666666666666 544442 1223
Q ss_pred CCcccEEEecCCCCccc---cc-ccCCCcceeEecc
Q 036097 322 SPSLKRLEIFKCTKLAA---VE-IETPNLSKCKYNG 353 (481)
Q Consensus 322 ~~~L~~L~l~~c~~l~~---~~-~~~p~L~~L~~~~ 353 (481)
++.|++|.++.|..+.. +. ...|+|.+|...|
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 56666666666665432 11 2235555555544
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.73 E-value=2.5e-19 Score=167.29 Aligned_cols=354 Identities=16% Similarity=0.210 Sum_probs=192.4
Q ss_pred CCCCHHHHHHHHcCCChhHHHhhhcccccchhh------hccCCeeEeeccchhhHHHHHHhhcCchhhhHHHHHHHHHH
Q 036097 18 SALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKA------WCTFPVLNFDEDLFERELLEMRAARGDVQKFNQARGKLLNY 91 (481)
Q Consensus 18 ~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (481)
-.||+|++.+|||+|+.+.+++++.+|+.|+.+ |.++....|..+.- ...
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~------------------------g~V 128 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD------------------------GGV 128 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC------------------------Ccc
Confidence 479999999999999999999999999999974 44443322222210 001
Q ss_pred HHHHHHhccCCCCCCCcceeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEc
Q 036097 92 WKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLF 171 (481)
Q Consensus 92 v~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~ 171 (481)
|...+. |.+ ..+++|++..+ .......+......|+++++|++.
T Consensus 129 V~~~~~-Rcg----------------------------------g~lk~LSlrG~-r~v~~sslrt~~~~CpnIehL~l~ 172 (483)
T KOG4341|consen 129 VENMIS-RCG----------------------------------GFLKELSLRGC-RAVGDSSLRTFASNCPNIEHLALY 172 (483)
T ss_pred eehHhh-hhc----------------------------------ccccccccccc-ccCCcchhhHHhhhCCchhhhhhh
Confidence 111111 111 23444444443 122222333333467777777777
Q ss_pred CeeccCCCCC----CCcCCCcceEEEecce-ecChHHHHHHhcCCCccceeEeeeecCcceEe----ecCCCCCcEEEEc
Q 036097 172 GCILLEFPGR----NSVKLPSLRKLRLAQV-RASDQVIENLVAGCPLIEDLIFEFCEGLKSIK----LFGRSKLRDIKIK 242 (481)
Q Consensus 172 ~~~~~~~~~~----~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~----i~~~~~L~~L~l~ 242 (481)
+|.. +... ....+++|+.|+|..| .+++..+..+..+||+|++|+++.|+.+..-. ..++..++++...
T Consensus 173 gc~~--iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k 250 (483)
T KOG4341|consen 173 GCKK--ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK 250 (483)
T ss_pred ccee--ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhc
Confidence 7752 1111 1234667777777774 45666666677777777777777776544311 1223444444444
Q ss_pred cCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE----echhhhHHhhhcCCcccEEEecccccccccc--
Q 036097 243 GGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC----ITSVVDETLSYHITRLVVLECLGLIVCFELQ-- 316 (481)
Q Consensus 243 ~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~-- 316 (481)
+|.....- .....-..++.+.++++. +++..+..+..++..|+.|+.++ |..+.
T Consensus 251 GC~e~~le-----------------~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~---~t~~~d~ 310 (483)
T KOG4341|consen 251 GCLELELE-----------------ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSS---CTDITDE 310 (483)
T ss_pred ccccccHH-----------------HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccC---CCCCchH
Confidence 44311000 000011222333333332 66666666667777777777777 66654
Q ss_pred ---cccccCCcccEEEecCCCCccc-----ccccCCCcceeEeccccc-CCcchhhhhccCCCccEEEEeeChhhHHH-H
Q 036097 317 ---NIKISSPSLKRLEIFKCTKLAA-----VEIETPNLSKCKYNGGVV-PFSSSTALKLLETDLNLYTINFDPQWYVK-F 386 (481)
Q Consensus 317 ---~l~~~~~~L~~L~l~~c~~l~~-----~~~~~p~L~~L~~~~~~~-~~~~~~~l~~~~~~L~~l~l~~~~~~~~~-~ 386 (481)
.+...+++|+.|.+..|..+.+ +..+++.|+.+...+... .+....++..+|+.|+.+.++.|...++. +
T Consensus 311 ~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi 390 (483)
T KOG4341|consen 311 VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI 390 (483)
T ss_pred HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh
Confidence 3444567777777777776554 455667777776665332 22334455567888888888766544332 1
Q ss_pred HHHHhhcccceeeEEEEEEeec--eeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 387 IELIAKFHQWSKVLNLLSECGE--SVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 387 ~~~~~~l~~L~~l~~L~i~~~~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
..+-..-.+.+.+..+.++... .+...+. ....++|+.+++-.+.... ...+..+-..+|+++....
T Consensus 391 ~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~-----l~~c~~Leri~l~~~q~vt----k~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 391 RHLSSSSCSLEGLEVLELDNCPLITDATLEH-----LSICRNLERIELIDCQDVT----KEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhhccccccccceeeecCCCCchHHHHHH-----HhhCcccceeeeechhhhh----hhhhHHHHhhCccceehhh
Confidence 1111111222222225555221 1111222 3335678887777766555 4455666667888887666
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.66 E-value=2.1e-16 Score=175.99 Aligned_cols=262 Identities=13% Similarity=-0.009 Sum_probs=161.2
Q ss_pred hCCeeEEEEEEeecCCcccccCCccc-CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 135 ESTVKELELHTILRGDRLYHLPQMVV-CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
.++++.|+++.+ .-...+|..++ .+.+|++|+|++|.+....+ ...+++|++|+|++|.+... +...+..+++
T Consensus 92 l~~L~~L~Ls~n---~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p--~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~ 165 (968)
T PLN00113 92 LPYIQTINLSNN---QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNNMLSGE-IPNDIGSFSS 165 (968)
T ss_pred CCCCCEEECCCC---ccCCcCChHHhccCCCCCEEECcCCccccccC--ccccCCCCEEECcCCccccc-CChHHhcCCC
Confidence 478899988875 12346777766 78899999999988754322 24578899999998877532 2233567888
Q ss_pred cceeEeeeecCcce--EeecCCCCCcEEEEccCCCC---ceEEEecCCccEEEEcCC--CCCCceeccCCCCCcEEEEE-
Q 036097 214 IEDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREA---EEVNINALNGHSITVVSP--LPSGKINEVSCKNLKSLFLC- 285 (481)
Q Consensus 214 Le~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~---~~~~~~~p~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~- 285 (481)
|++|++++|..... -.+..+++|+.|++++|... ......+++|+.|+++++ .+..+..+..+++|++|++.
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 99999988753222 23455688888888887622 122235678888888877 33455667888888888876
Q ss_pred --echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc---ccccCCCcceeEecccccCCcc
Q 036097 286 --ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA---VEIETPNLSKCKYNGGVVPFSS 360 (481)
Q Consensus 286 --~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~---~~~~~p~L~~L~~~~~~~~~~~ 360 (481)
+.+ .++..+.++++|+.|++++|.....+.......++|+.|++++|..... .....++|+.|.+.++.+....
T Consensus 246 n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 246 NNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred ceecc-ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 222 3445567778888888887332222222223356778888877652222 2234567777777776554333
Q ss_pred hhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeec
Q 036097 361 STALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGE 408 (481)
Q Consensus 361 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~ 408 (481)
...+. .+++|+.+++..+... ..++..+..+.+|+.|+++.+.
T Consensus 325 ~~~~~-~l~~L~~L~L~~n~l~----~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 325 PVALT-SLPRLQVLQLWSNKFS----GEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred ChhHh-cCCCCCEEECcCCCCc----CcCChHHhCCCCCcEEECCCCe
Confidence 32222 5677777777554411 1223333344444446666443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.63 E-value=6.7e-16 Score=171.95 Aligned_cols=307 Identities=13% Similarity=0.049 Sum_probs=173.0
Q ss_pred hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
..++++|++..+ .....+|..+.++++|++|++++|.+....+.....+++|++|++++|.+... +...+..+++|
T Consensus 235 l~~L~~L~L~~n---~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L 310 (968)
T PLN00113 235 LTSLNHLDLVYN---NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNL 310 (968)
T ss_pred CCCCCEEECcCc---eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCCCCC
Confidence 367888888765 22345677777788888888888877544333455677888888887766432 23335667777
Q ss_pred ceeEeeeecCcce--EeecCCCCCcEEEEccCCCC---ceEEEecCCccEEEEcCC--CC--------------------
Q 036097 215 EDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREA---EEVNINALNGHSITVVSP--LP-------------------- 267 (481)
Q Consensus 215 e~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~---~~~~~~~p~L~~L~l~~~--~~-------------------- 267 (481)
++|++++|..... ..+..+++|+.|++++|... .......++|+.|+++++ .+
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390 (968)
T ss_pred cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence 7777776642211 12334566777777666411 111123455555555554 11
Q ss_pred ----CCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccccc
Q 036097 268 ----SGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVE 340 (481)
Q Consensus 268 ----~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~ 340 (481)
..+..+..+++|+.|++. +++ .++..+..+++|+.|++++|............+++|+.|++++|.....++
T Consensus 391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 391 SLEGEIPKSLGACRSLRRVRLQDNSFSG-ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred EecccCCHHHhCCCCCCEEECcCCEeee-ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 222334455555555554 221 123334556666666666643322222222345677777777765332221
Q ss_pred --ccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeece-eeechhhh
Q 036097 341 --IETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGES-VIVPKELR 417 (481)
Q Consensus 341 --~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~-~~~~~~~~ 417 (481)
...++|+.|.++++.+.......+. ++++|+.++++.+. ..+.++..+.++.+|+.|+++.|.. ...|+.
T Consensus 470 ~~~~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~----l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-- 542 (968)
T PLN00113 470 DSFGSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENK----LSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS-- 542 (968)
T ss_pred cccccccceEEECcCCccCCccChhhh-hhhccCEEECcCCc----ceeeCChHHcCccCCCEEECCCCcccccCChh--
Confidence 2346677777777665543332332 56777777776554 1122334455555555688876643 234433
Q ss_pred ccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 418 QILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 418 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
+..+++|+.|+++.+.-.+ .++..+...++|+.|.+
T Consensus 543 ---~~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~L~~l~l 578 (968)
T PLN00113 543 ---FSEMPVLSQLDLSQNQLSG------EIPKNLGNVESLVQVNI 578 (968)
T ss_pred ---HhCcccCCEEECCCCcccc------cCChhHhcCcccCEEec
Confidence 4556778888887765322 34555667778888888
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.50 E-value=4.5e-15 Score=144.33 Aligned_cols=288 Identities=15% Similarity=0.124 Sum_probs=142.3
Q ss_pred hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
.++++++++..+ ....+|.......+|+.|+|.+|.+..+.......+|.|++|+|+.|.++.-.... +..-+++
T Consensus 101 l~nLq~v~l~~N----~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~s-fp~~~ni 175 (873)
T KOG4194|consen 101 LPNLQEVNLNKN----ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPS-FPAKVNI 175 (873)
T ss_pred CCcceeeeeccc----hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCC-CCCCCCc
Confidence 367777777665 55666766556666777777777776555445555677777777777654311110 2234567
Q ss_pred ceeEeeeec--CcceEeecCCCCCcEEEEccCC---CCceEEEecCCccEEEEcCCCCC--CceeccCCCCCcEEEEE--
Q 036097 215 EDLIFEFCE--GLKSIKLFGRSKLRDIKIKGGR---EAEEVNINALNGHSITVVSPLPS--GKINEVSCKNLKSLFLC-- 285 (481)
Q Consensus 215 e~L~l~~~~--~~~~l~i~~~~~L~~L~l~~~~---~~~~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~~L~~L~l~-- 285 (481)
++|+++++. .++.-++.++.+|..|+++++. .+.......|.|+.|++..+... ....|.+++.|+.|.+.
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence 777777663 2222234445666666666665 22223334666666666555111 12234444444444443
Q ss_pred ----echhh--------------------hHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccccc-
Q 036097 286 ----ITSVV--------------------DETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVE- 340 (481)
Q Consensus 286 ----~~~~~--------------------~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~- 340 (481)
+.+.. -..++-++++|++|++++|..-..-.+-.-.+++|+.|++++. .+..+.
T Consensus 256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~ 334 (873)
T KOG4194|consen 256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDE 334 (873)
T ss_pred CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCCh
Confidence 11111 1122334444444444442211000011111455666666552 233221
Q ss_pred ---ccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeCh-hhH-HHHHHHHhhcccceeeEEEEEEeeceeeechh
Q 036097 341 ---IETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDP-QWY-VKFIELIAKFHQWSKVLNLLSECGESVIVPKE 415 (481)
Q Consensus 341 ---~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~-~~~-~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~ 415 (481)
.....|+.|.++++.+.-..-.++ ..+.+|++|++..+. .|. ++-...+.+++.|++ |.+.+|....++..
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi~~l~e~af-~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk---L~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSIDHLAEGAF-VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK---LRLTGNQLKSIPKR 410 (873)
T ss_pred hHHHHHHHhhhhcccccchHHHHhhHH-HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh---eeecCceeeecchh
Confidence 112445555555544332111111 245666766664333 221 122233344555555 88877766666632
Q ss_pred hhccCCCCCCCCceEEEEecc
Q 036097 416 LRQILPPPLSGVKHLNFSISI 436 (481)
Q Consensus 416 ~~~~~~~~l~~L~~L~l~~~~ 436 (481)
.+.-|.+|++|+|..+.
T Consensus 411 ----Afsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 411 ----AFSGLEALEHLDLGDNA 427 (873)
T ss_pred ----hhccCcccceecCCCCc
Confidence 34557778888887654
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.45 E-value=2.4e-13 Score=152.44 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=84.3
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
.+++.|++..+ ....+|..+ ...+|+.|+++++.+...+. ....+++|+.|+|+++.... .++. ++.+++|+
T Consensus 589 ~~Lr~L~~~~~----~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~-~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le 660 (1153)
T PLN03210 589 PKLRLLRWDKY----PLRCMPSNF-RPENLVKLQMQGSKLEKLWD-GVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLE 660 (1153)
T ss_pred cccEEEEecCC----CCCCCCCcC-CccCCcEEECcCcccccccc-ccccCCCCCEEECCCCCCcC-cCCc-cccCCccc
Confidence 45777777654 446677654 67889999999988866553 45578889999998764221 1111 56688899
Q ss_pred eeEeeeecCcceE--eecCCCCCcEEEEccCCCCceEE--EecCCccEEEEcCC
Q 036097 216 DLIFEFCEGLKSI--KLFGRSKLRDIKIKGGREAEEVN--INALNGHSITVVSP 265 (481)
Q Consensus 216 ~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~~~~~~~--~~~p~L~~L~l~~~ 265 (481)
+|++.+|..+..+ .+..+++|+.|++++|..+..+. +.+++|+.|.+++|
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCC
Confidence 9999888766554 34556888888888887444433 35678888888877
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.39 E-value=4.3e-14 Score=137.62 Aligned_cols=283 Identities=12% Similarity=0.083 Sum_probs=184.0
Q ss_pred CCeeEEEEEEeecCCcccccCCcccC-CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVC-SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
+-++.|+|+.+ ...++|...+. -.++++|+|++|++.++....+.++.+|.+|.|+.|+++. -....+.+.|+|
T Consensus 149 ~alrslDLSrN----~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L 223 (873)
T KOG4194|consen 149 PALRSLDLSRN----LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKL 223 (873)
T ss_pred hhhhhhhhhhc----hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchh
Confidence 56777777776 34455544443 4789999999999987766667778899999999998864 233446779999
Q ss_pred ceeEeeeec--CcceEeecCCCCCcEEEEccCC--CC-ceEEEecCCccEEEEcCC--CCCCceeccCCCCCcEEEEE--
Q 036097 215 EDLIFEFCE--GLKSIKLFGRSKLRDIKIKGGR--EA-EEVNINALNGHSITVVSP--LPSGKINEVSCKNLKSLFLC-- 285 (481)
Q Consensus 215 e~L~l~~~~--~~~~l~i~~~~~L~~L~l~~~~--~~-~~~~~~~p~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~-- 285 (481)
+.|++..+. ..+.+.+.++++|+.|++.++. .+ ..+...+.+++.|++.-+ ..-....+-++..|+.|+++
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 999998773 2334556678999999998876 23 234567888899988776 23345567788888888877
Q ss_pred -echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc----cccCCCcceeEecccccCCcc
Q 036097 286 -ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVVPFSS 360 (481)
Q Consensus 286 -~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~~~~~ 360 (481)
|..-. ...-..+++|+.|+|++|++..-=+.-......|+.|++++. .+..+ .....+|++|.++.+.+....
T Consensus 304 aI~rih-~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 304 AIQRIH-IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred hhheee-cchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 11111 122257889999999986532221222233567888888873 34432 234478888888776554322
Q ss_pred ---hhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEec
Q 036097 361 ---STALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSIS 435 (481)
Q Consensus 361 ---~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 435 (481)
..++. .+++|++|++..++ .....++-+.+++.|+ .|++.+|.+..+.++ .+.++ +|+.|.+.+.
T Consensus 382 EDaa~~f~-gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE---~LdL~~NaiaSIq~n----AFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 382 EDAAVAFN-GLPSLRKLRLTGNQ-LKSIPKRAFSGLEALE---HLDLGDNAIASIQPN----AFEPM-ELKELVMNSS 449 (873)
T ss_pred ecchhhhc-cchhhhheeecCce-eeecchhhhccCcccc---eecCCCCcceeeccc----ccccc-hhhhhhhccc
Confidence 11233 58999999886654 1112233344555444 499997865544422 24444 7888877654
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.24 E-value=1.6e-11 Score=137.89 Aligned_cols=232 Identities=19% Similarity=0.199 Sum_probs=138.1
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeecc-CCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILL-EFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
.++++|++..+ ....+|..+..+++|+.|+|+++... .+| ....+++|++|+|.+|.... .+..-+..+++|
T Consensus 611 ~~L~~L~L~~s----~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L 683 (1153)
T PLN03210 611 ENLVKLQMQGS----KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLV-ELPSSIQYLNKL 683 (1153)
T ss_pred cCCcEEECcCc----cccccccccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCcc-ccchhhhccCCC
Confidence 57888888776 45567777788999999999987543 333 35568999999999885432 233346778999
Q ss_pred ceeEeeeecCcceEeec-CCCCCcEEEEccCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEE-ec----
Q 036097 215 EDLIFEFCEGLKSIKLF-GRSKLRDIKIKGGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLC-IT---- 287 (481)
Q Consensus 215 e~L~l~~~~~~~~l~i~-~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~-~~---- 287 (481)
+.|++++|..++.+... .+++|+.|.+++|..+..+....++|++|+++++. ...+.. ..+++|++|.+. ..
T Consensus 684 ~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~-~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSN-LRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccc-ccccccccccccccchhhc
Confidence 99999999877665332 46899999999998665555455788888887762 222211 134445444443 10
Q ss_pred ----------------------------hhhhHHhhhcCCcccEEEecccccccccccccc--cCCcccEEEecCCCCcc
Q 036097 288 ----------------------------SVVDETLSYHITRLVVLECLGLIVCFELQNIKI--SSPSLKRLEIFKCTKLA 337 (481)
Q Consensus 288 ----------------------------~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~--~~~~L~~L~l~~c~~l~ 337 (481)
...++..+.++++|+.|++.+ |.+++.++. ..++|+.|++++|..+.
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~---C~~L~~LP~~~~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN---CINLETLPTGINLESLESLDLSGCSRLR 839 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC---CCCcCeeCCCCCccccCEEECCCCCccc
Confidence 111233344555555555555 544443322 23455555555555544
Q ss_pred cccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeCh
Q 036097 338 AVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDP 380 (481)
Q Consensus 338 ~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~ 380 (481)
.++...++|+.|.+.++.+...+ ..+ ..+++|+.+++..|+
T Consensus 840 ~~p~~~~nL~~L~Ls~n~i~~iP-~si-~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 840 TFPDISTNISDLNLSRTGIEEVP-WWI-EKFSNLSFLDMNGCN 880 (1153)
T ss_pred cccccccccCEeECCCCCCccCh-HHH-hcCCCCCEEECCCCC
Confidence 44433445555555554333211 111 144555555555544
No 9
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.19 E-value=1.1e-12 Score=123.25 Aligned_cols=275 Identities=16% Similarity=0.167 Sum_probs=183.6
Q ss_pred CCccEEEEcCeeccCCCC--CCCcCCCcceEEEecce-ecChHHHHHHhcCCCccceeEeeeecCcceEeec----CCCC
Q 036097 163 ETVNVLDLFGCILLEFPG--RNSVKLPSLRKLRLAQV-RASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLF----GRSK 235 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~--~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~----~~~~ 235 (481)
..|+.|.+.||+-..... .....+|+++.|.+.++ +++|..+..+...|+.|+.|.+..|..++...+. +|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 458999999987543321 23457899999999888 5567888888889999999999998877664332 4788
Q ss_pred CcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE----echhhhHHhhhcCCcccEEEeccccc
Q 036097 236 LRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC----ITSVVDETLSYHITRLVVLECLGLIV 311 (481)
Q Consensus 236 L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~~~~~~~~~L~~L~L~~~~~ 311 (481)
|+.|++++|.....- .......+|++++.+.+. .+.+.+.....+++.+..+++..
T Consensus 218 L~~lNlSwc~qi~~~-----------------gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~--- 277 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGN-----------------GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH--- 277 (483)
T ss_pred HHHhhhccCchhhcC-----------------cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh---
Confidence 888888888633220 111223334444444332 45566666677888888888878
Q ss_pred cccccccc-----ccCCcccEEEecCCCCccc-----ccccCCCcceeEecccc-cCCcchhhhhccCCCccEEEEeeCh
Q 036097 312 CFELQNIK-----ISSPSLKRLEIFKCTKLAA-----VEIETPNLSKCKYNGGV-VPFSSSTALKLLETDLNLYTINFDP 380 (481)
Q Consensus 312 c~~l~~l~-----~~~~~L~~L~l~~c~~l~~-----~~~~~p~L~~L~~~~~~-~~~~~~~~l~~~~~~L~~l~l~~~~ 380 (481)
|..+++.. ..+..|+.|..++|.++.+ +...+++|+.+.+.++. .++.-.+.+..+++.|+.+++..+.
T Consensus 278 c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 278 CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 87776433 3478999999999998776 56788999999999854 4555556677899999999986666
Q ss_pred hhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhh--ccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccc
Q 036097 381 QWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELR--QILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVD 458 (481)
Q Consensus 381 ~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~ 458 (481)
...+. ++.+.-.++..|++|.++... .+..+.+. .........|..+.++.++.+. ...+ ..+..||+||
T Consensus 358 ~~~d~--tL~sls~~C~~lr~lslshce-~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~----d~~L-e~l~~c~~Le 429 (483)
T KOG4341|consen 358 LITDG--TLASLSRNCPRLRVLSLSHCE-LITDEGIRHLSSSSCSLEGLEVLELDNCPLIT----DATL-EHLSICRNLE 429 (483)
T ss_pred eehhh--hHhhhccCCchhccCChhhhh-hhhhhhhhhhhhccccccccceeeecCCCCch----HHHH-HHHhhCcccc
Confidence 44332 344444444454557776221 11111100 1112335788999999998766 3333 4578999999
Q ss_pred eEEE-eec
Q 036097 459 TVTI-EYG 465 (481)
Q Consensus 459 ~L~l-~~~ 465 (481)
++++ .|.
T Consensus 430 ri~l~~~q 437 (483)
T KOG4341|consen 430 RIELIDCQ 437 (483)
T ss_pred eeeeechh
Confidence 9888 554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.11 E-value=2.3e-13 Score=133.59 Aligned_cols=81 Identities=10% Similarity=0.113 Sum_probs=41.1
Q ss_pred cCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHH
Q 036097 367 LETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQV 446 (481)
Q Consensus 367 ~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 446 (481)
.++.|+++.++.+. -.+..+++++.+|..|..+...+|..+-+||. +..+..|+.|.|+-+.-++
T Consensus 289 KL~kL~kLy~n~Nk---L~FeGiPSGIGKL~~Levf~aanN~LElVPEg-----lcRC~kL~kL~L~~NrLiT------- 353 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNK---LTFEGIPSGIGKLIQLEVFHAANNKLELVPEG-----LCRCVKLQKLKLDHNRLIT------- 353 (1255)
T ss_pred hhHHHHHHHhccCc---ccccCCccchhhhhhhHHHHhhccccccCchh-----hhhhHHHHHhcccccceee-------
Confidence 44455555443332 13344556666665544555555555556655 5556666666665544322
Q ss_pred HhhhhhcCcccceEEE
Q 036097 447 VDGLLWMSPHVDTVTI 462 (481)
Q Consensus 447 l~~ll~~~p~L~~L~l 462 (481)
+|.-+.-.|.|+.|++
T Consensus 354 LPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDL 369 (1255)
T ss_pred chhhhhhcCCcceeec
Confidence 1222233555666665
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.03 E-value=1.2e-12 Score=128.55 Aligned_cols=277 Identities=14% Similarity=0.110 Sum_probs=173.7
Q ss_pred CeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccce
Q 036097 137 TVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIED 216 (481)
Q Consensus 137 ~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 216 (481)
.++.+.+..+ ......+|..+|.+..|..|+||+|.+...| .....-+++-.|+|++|.+. .....++.+.+.|-.
T Consensus 79 ~LRsv~~R~N--~LKnsGiP~diF~l~dLt~lDLShNqL~EvP-~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 79 RLRSVIVRDN--NLKNSGIPTDIFRLKDLTILDLSHNQLREVP-TNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred hhHHHhhhcc--ccccCCCCchhcccccceeeecchhhhhhcc-hhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 3444443333 4456678888888888888888888876665 24445677888888888773 223334445666777
Q ss_pred eEeeeecCcceE--eecCCCCCcEEEEccCCCCceEE---EecCCccEEEEcCC---CCCCceeccCCCCCcEEEEEech
Q 036097 217 LIFEFCEGLKSI--KLFGRSKLRDIKIKGGREAEEVN---INALNGHSITVVSP---LPSGKINEVSCKNLKSLFLCITS 288 (481)
Q Consensus 217 L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~~~~~~~---~~~p~L~~L~l~~~---~~~~~~~~~~~~~L~~L~l~~~~ 288 (481)
|+++++. ++.+ .+.-+..|+.|++++++...... -++.+|+.|.+++. ....+.++..+.||..++++-++
T Consensus 155 LDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 155 LDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 7777764 2221 22334677788888776211111 13345566666665 33467778888999999887222
Q ss_pred -hhhHHhhhcCCcccEEEeccccccccccccccc---CCcccEEEecCCCCcccccc---cCCCcceeEeccccc-----
Q 036097 289 -VVDETLSYHITRLVVLECLGLIVCFELQNIKIS---SPSLKRLEIFKCTKLAAVEI---ETPNLSKCKYNGGVV----- 356 (481)
Q Consensus 289 -~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~---~~p~L~~L~~~~~~~----- 356 (481)
-.++..+-++++|+.|+|++|++ +.+... -.+|++|+++... +..++. ..+.|+.|..+++..
T Consensus 234 Lp~vPecly~l~~LrrLNLS~N~i----teL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 234 LPIVPECLYKLRNLRRLNLSGNKI----TELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred CCcchHHHhhhhhhheeccCcCce----eeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCC
Confidence 33455567889999999999543 222221 2578888888743 443332 346677777666443
Q ss_pred CCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097 357 PFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI 436 (481)
Q Consensus 357 ~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 436 (481)
|...+ .+..|+.+....+. +.-++.++..+..|+.|.+++|....+|+. +.-++.|+.|++..+.
T Consensus 309 PSGIG-----KL~~Levf~aanN~-----LElVPEglcRC~kL~kL~L~~NrLiTLPea-----IHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 309 PSGIG-----KLIQLEVFHAANNK-----LELVPEGLCRCVKLQKLKLDHNRLITLPEA-----IHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccchh-----hhhhhHHHHhhccc-----cccCchhhhhhHHHHHhcccccceeechhh-----hhhcCCcceeeccCCc
Confidence 33332 33344443333222 233467777777777799999988889987 7778999999998876
Q ss_pred cc
Q 036097 437 PF 438 (481)
Q Consensus 437 ~~ 438 (481)
+.
T Consensus 374 nL 375 (1255)
T KOG0444|consen 374 NL 375 (1255)
T ss_pred Cc
Confidence 43
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.01 E-value=1.1e-09 Score=115.16 Aligned_cols=255 Identities=15% Similarity=0.092 Sum_probs=158.7
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
.+-..|+++.. ....+|..+. ++|+.|.+.+|.+..+|. ..++|++|++++|.++. +. ...++|+
T Consensus 201 ~~~~~LdLs~~----~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lts--LP---~lp~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGES----GLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS--LP---VLPPGLL 265 (788)
T ss_pred CCCcEEEcCCC----CCCcCCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCc--cc---Ccccccc
Confidence 34556776665 4456887664 479999999998876653 35889999999998753 22 1246889
Q ss_pred eeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEEechhhhHHh
Q 036097 216 DLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLCITSVVDETL 294 (481)
Q Consensus 216 ~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 294 (481)
+|++.+|. +..+.- ...+|+.|++++|. +..+....++|+.|+++++. ...+. ...+|+.|.+. +..+..+
T Consensus 266 ~L~Ls~N~-L~~Lp~-lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls--~N~L~~L 337 (788)
T PRK15387 266 ELSIFSNP-LTHLPA-LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPA---LPSELCKLWAY--NNQLTSL 337 (788)
T ss_pred eeeccCCc-hhhhhh-chhhcCEEECcCCc-cccccccccccceeECCCCccccCCC---Ccccccccccc--cCccccc
Confidence 99998874 332211 12678888888875 23333345789999998872 22221 12346666544 2222222
Q ss_pred hhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccccccCCCcceeEecccccCCcchhhhhccCCCccEE
Q 036097 295 SYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLY 374 (481)
Q Consensus 295 ~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l 374 (481)
....++|+.|++++|+ ++.++...++|+.|+++++ .+..++...++|+.|.++++.+..... ..++|+.+
T Consensus 338 P~lp~~Lq~LdLS~N~----Ls~LP~lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N~Lt~LP~-----l~s~L~~L 407 (788)
T PRK15387 338 PTLPSGLQELSVSDNQ----LASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLTSLPV-----LPSELKEL 407 (788)
T ss_pred cccccccceEecCCCc----cCCCCCCCcccceehhhcc-ccccCcccccccceEEecCCcccCCCC-----cccCCCEE
Confidence 2222478999998853 3333334467888888764 355555555678888888876654332 34678888
Q ss_pred EEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097 375 TINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI 436 (481)
Q Consensus 375 ~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 436 (481)
+++.+. +..++..+.+|. .|+++.|....+|+. +..+.+|+.|+|+++.
T Consensus 408 dLS~N~-----LssIP~l~~~L~---~L~Ls~NqLt~LP~s-----l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 408 MVSGNR-----LTSLPMLPSGLL---SLSVYRNQLTRLPES-----LIHLSSETTVNLEGNP 456 (788)
T ss_pred EccCCc-----CCCCCcchhhhh---hhhhccCcccccChH-----HhhccCCCeEECCCCC
Confidence 776654 122233233344 488887777777765 5557788889988775
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.88 E-value=4.4e-09 Score=110.81 Aligned_cols=251 Identities=14% Similarity=0.068 Sum_probs=160.0
Q ss_pred CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097 163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK 242 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~ 242 (481)
.+-..|+++++.+..+|... .++|+.|.+..|.++. + ....|+|++|++++|. ++.+... .++|+.|++.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l---~~~L~~L~L~~N~Lt~--L---P~lp~~Lk~LdLs~N~-LtsLP~l-p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL---PAHITTLVIPDNNLTS--L---PALPPELRTLEVSGNQ-LTSLPVL-PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch---hcCCCEEEccCCcCCC--C---CCCCCCCcEEEecCCc-cCcccCc-ccccceeecc
Confidence 45778999999887666422 2579999999998753 2 1236899999999883 4433222 3789999998
Q ss_pred cCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEEechhhhHHhhhcCCcccEEEeccccccccccccccc
Q 036097 243 GGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKIS 321 (481)
Q Consensus 243 ~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~ 321 (481)
++. +..+....++|+.|+++++. ...+. ..++|+.|+++ ...+..+....++|+.|.+.+|. ++.++..
T Consensus 271 ~N~-L~~Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS--~N~L~~Lp~lp~~L~~L~Ls~N~----L~~LP~l 340 (788)
T PRK15387 271 SNP-LTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVS--DNQLASLPALPSELCKLWAYNNQ----LTSLPTL 340 (788)
T ss_pred CCc-hhhhhhchhhcCEEECcCCccccccc---cccccceeECC--CCccccCCCCcccccccccccCc----ccccccc
Confidence 885 22222234678899988872 22221 34678888876 12222222233468888888743 2333333
Q ss_pred CCcccEEEecCCCCcccccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEE
Q 036097 322 SPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLN 401 (481)
Q Consensus 322 ~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~ 401 (481)
.++|+.|+++++ .+..++...++|+.|.++++.+..... ..++|+.++++.+. +..++...++++ .
T Consensus 341 p~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~-----l~~~L~~LdLs~N~-----Lt~LP~l~s~L~---~ 406 (788)
T PRK15387 341 PSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNR-----LTSLPVLPSELK---E 406 (788)
T ss_pred ccccceEecCCC-ccCCCCCCCcccceehhhccccccCcc-----cccccceEEecCCc-----ccCCCCcccCCC---E
Confidence 357999999884 466666556788888887766654322 34578888886554 223333334444 4
Q ss_pred EEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 402 LLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 402 L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
|+++.|....+|.. +.+|+.|+++.+.- ..+|.-+.++++|+.|.+
T Consensus 407 LdLS~N~LssIP~l--------~~~L~~L~Ls~NqL-------t~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 407 LMVSGNRLTSLPML--------PSGLLSLSVYRNQL-------TRLPESLIHLSSETTVNL 452 (788)
T ss_pred EEccCCcCCCCCcc--------hhhhhhhhhccCcc-------cccChHHhhccCCCeEEC
Confidence 89987766656522 35788888877652 234555667889999988
No 14
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.85 E-value=2e-09 Score=71.78 Aligned_cols=37 Identities=32% Similarity=0.647 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhcc
Q 036097 17 ISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCT 53 (481)
Q Consensus 17 i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~ 53 (481)
|+.||+||+.+||+||+.+|+++++.|||+|+++...
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence 5789999999999999999999999999999986543
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.78 E-value=3.3e-09 Score=102.87 Aligned_cols=41 Identities=10% Similarity=-0.014 Sum_probs=22.7
Q ss_pred CCCCCCCceEEEEecccchhhhHHHHHhhhh-hcCcccceEEEe
Q 036097 421 PPPLSGVKHLNFSISIPFKKFAIAQVVDGLL-WMSPHVDTVTIE 463 (481)
Q Consensus 421 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll-~~~p~L~~L~l~ 463 (481)
.+.+.+|++++++.+.-.... ...+...+ ...++|+.+.++
T Consensus 274 ~~~~~~L~~l~l~~N~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 274 LAEKESLLELDLRGNKFGEEG--AQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HhcCCCccEEECCCCCCcHHH--HHHHHHHHhhcCCchhhcccC
Confidence 444577888888776543322 22233223 334678877763
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.63 E-value=6.5e-11 Score=110.91 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=19.5
Q ss_pred CCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 424 LSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 424 l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
+.+|+.|++..+. ...+|-.+++|.+|++|.+
T Consensus 504 m~nL~tLDL~nNd-------lq~IPp~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 504 MRNLTTLDLQNND-------LQQIPPILGNMTNLRHLEL 535 (565)
T ss_pred hhhcceeccCCCc-------hhhCChhhccccceeEEEe
Confidence 4566666665554 3445566667777777766
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.60 E-value=6.2e-08 Score=93.90 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=34.3
Q ss_pred EEEcCeeccCCC-CCCCcCCCcceEEEecceecChH---HHHHHhcCCCccceeEeeeec
Q 036097 168 LDLFGCILLEFP-GRNSVKLPSLRKLRLAQVRASDQ---VIENLVAGCPLIEDLIFEFCE 223 (481)
Q Consensus 168 L~L~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~---~l~~l~~~~p~Le~L~l~~~~ 223 (481)
|+|.++.+.... ......+++|+.|++.++.+++. .+...+...|.|++|.++++.
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~ 62 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE 62 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc
Confidence 555555543111 11223456789999998888663 344455677788888887664
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.56 E-value=9.8e-09 Score=106.00 Aligned_cols=166 Identities=14% Similarity=0.015 Sum_probs=80.3
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce------------------
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV------------------ 197 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~------------------ 197 (481)
++++++.|..+ ....+|..+....+|++|++++|.+...|.. ...+..+..+..++|
T Consensus 91 ~~l~~lnL~~n----~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~ 165 (1081)
T KOG0618|consen 91 RNLQYLNLKNN----RLQSLPASISELKNLQYLDLSFNHFGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRL 165 (1081)
T ss_pred hcchhheeccc----hhhcCchhHHhhhcccccccchhccCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhhhhh
Confidence 45666666554 4556666666666677777776666544431 111222222222222
Q ss_pred -ecChHHHHHHhcCCCccce-eEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccC
Q 036097 198 -RASDQVIENLVAGCPLIED-LIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVS 275 (481)
Q Consensus 198 -~~~~~~l~~l~~~~p~Le~-L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~ 275 (481)
...+.. +..--.|++ |+++++.-. ......+++|+.+....+ .+..+.+.-|+|+.|+...+.-.....-..
T Consensus 166 n~l~~~~----~~~i~~l~~~ldLr~N~~~-~~dls~~~~l~~l~c~rn-~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~ 239 (1081)
T KOG0618|consen 166 NVLGGSF----LIDIYNLTHQLDLRYNEME-VLDLSNLANLEVLHCERN-QLSELEISGPSLTALYADHNPLTTLDVHPV 239 (1081)
T ss_pred hhcccch----hcchhhhheeeecccchhh-hhhhhhccchhhhhhhhc-ccceEEecCcchheeeeccCcceeeccccc
Confidence 111100 111112222 455544322 222333344444443332 444555566667776666653222222223
Q ss_pred CCCCcEEEEEe-chhhhHHhhhcCCcccEEEecccccc
Q 036097 276 CKNLKSLFLCI-TSVVDETLSYHITRLVVLECLGLIVC 312 (481)
Q Consensus 276 ~~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~L~~~~~c 312 (481)
-.+|++++++. .-..++.++..|++|+.+.+..|+++
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~ 277 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV 277 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHH
Confidence 34677777762 22334577888888888888876653
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.8e-08 Score=94.62 Aligned_cols=193 Identities=12% Similarity=0.029 Sum_probs=119.7
Q ss_pred CCCCccEEEEcCeeccCCCC-CCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeeecCc---ceEeecCCCC
Q 036097 161 CSETVNVLDLFGCILLEFPG-RNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFCEGL---KSIKLFGRSK 235 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~~~---~~l~i~~~~~ 235 (481)
+.++|+...|.++.+...+. .....|++++.|+|+.+-+.. ..+..++...|+||.|.++.|.-. .......+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45667777777776643332 133467888888888876655 666777788888888888877421 1111223588
Q ss_pred CcEEEEccCC----CCceEEEecCCccEEEEcCCCC--CCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEe
Q 036097 236 LRDIKIKGGR----EAEEVNINALNGHSITVVSPLP--SGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLEC 306 (481)
Q Consensus 236 L~~L~l~~~~----~~~~~~~~~p~L~~L~l~~~~~--~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L 306 (481)
||.|.++.|. ....+...+|+|+.|.+.++.+ ........+..|+.|+|+ +-+........++|.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 8888888887 3344456788888888887731 122344566778888877 333333345678888888888
Q ss_pred cccccccccc---------cccccCCcccEEEecCCCC--cccc--cccCCCcceeEeccccc
Q 036097 307 LGLIVCFELQ---------NIKISSPSLKRLEIFKCTK--LAAV--EIETPNLSKCKYNGGVV 356 (481)
Q Consensus 307 ~~~~~c~~l~---------~l~~~~~~L~~L~l~~c~~--l~~~--~~~~p~L~~L~~~~~~~ 356 (481)
+. |..-. +....+|+|+.|++...+- +..+ ....++|+.|.+.++.+
T Consensus 279 s~---tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 279 SS---TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cc---cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 77 43211 1123478888888887543 2221 12346667666655443
No 20
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.1e-07 Score=86.43 Aligned_cols=198 Identities=16% Similarity=0.110 Sum_probs=112.6
Q ss_pred cceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--eecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCC
Q 036097 188 SLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--KLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSP 265 (481)
Q Consensus 188 ~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~ 265 (481)
+|+.|+|+...++...+..+++.|..|+.|.+.+..--+.+ .+.. ..+|+.++++++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk---------------------N~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK---------------------NSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc---------------------cccceeeccccc
Confidence 57888888777777778888888888888888766432222 1111 123333333333
Q ss_pred CCCCceeccCCCCCcEEEEEechhhhHHhhhcCCcccEEEecccccccccccccc-----cCCcccEEEecCCCC-cccc
Q 036097 266 LPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKI-----SSPSLKRLEIFKCTK-LAAV 339 (481)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~-----~~~~L~~L~l~~c~~-l~~~ 339 (481)
.| ++.....-++.+|+.|..|+|+. |.-.+.... ..++|+.|++++|.. +.
T Consensus 245 sG------------------~t~n~~~ll~~scs~L~~LNlsW---c~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~-- 301 (419)
T KOG2120|consen 245 SG------------------FTENALQLLLSSCSRLDELNLSW---CFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ-- 301 (419)
T ss_pred cc------------------cchhHHHHHHHhhhhHhhcCchH---hhccchhhhHHHhhhchhhhhhhhhhhHhhhh--
Confidence 22 44555667778888888888888 766553321 246778888877652 11
Q ss_pred cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhcc
Q 036097 340 EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQI 419 (481)
Q Consensus 340 ~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~ 419 (481)
......+...||+|..++++.+....+. +...+-+...|++|.++-. -...|+.+..
T Consensus 302 ------------------~sh~~tL~~rcp~l~~LDLSD~v~l~~~---~~~~~~kf~~L~~lSlsRC-Y~i~p~~~~~- 358 (419)
T KOG2120|consen 302 ------------------KSHLSTLVRRCPNLVHLDLSDSVMLKND---CFQEFFKFNYLQHLSLSRC-YDIIPETLLE- 358 (419)
T ss_pred ------------------hhHHHHHHHhCCceeeeccccccccCch---HHHHHHhcchheeeehhhh-cCCChHHeee-
Confidence 1122223345666666666555433332 2233333444444777622 1222332111
Q ss_pred CCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccce
Q 036097 420 LPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDT 459 (481)
Q Consensus 420 ~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~ 459 (481)
+...++|.+|++.++...+ ..+.+.+.||+|+.
T Consensus 359 -l~s~psl~yLdv~g~vsdt------~mel~~e~~~~lki 391 (419)
T KOG2120|consen 359 -LNSKPSLVYLDVFGCVSDT------TMELLKEMLSHLKI 391 (419)
T ss_pred -eccCcceEEEEeccccCch------HHHHHHHhCccccc
Confidence 2334689999998887533 45666778987763
No 21
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.38 E-value=1.1e-07 Score=63.80 Aligned_cols=37 Identities=41% Similarity=0.684 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhcc
Q 036097 17 ISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCT 53 (481)
Q Consensus 17 i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~ 53 (481)
+.+||+|++.+||++|+..|+++++.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987655
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=8.8e-08 Score=91.28 Aligned_cols=131 Identities=16% Similarity=0.130 Sum_probs=89.3
Q ss_pred HhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCC-CCcCCCcceEEEecceecChHHHHHHhcCCC
Q 036097 134 IESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGR-NSVKLPSLRKLRLAQVRASDQVIENLVAGCP 212 (481)
Q Consensus 134 ~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 212 (481)
..+++++|+|+.+. ......+...+..+|+|+.|+|+.|++...... ....+++|++|.|.+|.++-..+..++..||
T Consensus 144 ~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 34688888887651 223333334445678999999998887543322 2336789999999999998888888899999
Q ss_pred ccceeEeeeecCcceE--eecCCCCCcEEEEccCCCC--c--eEEEecCCccEEEEcCC
Q 036097 213 LIEDLIFEFCEGLKSI--KLFGRSKLRDIKIKGGREA--E--EVNINALNGHSITVVSP 265 (481)
Q Consensus 213 ~Le~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~~~--~--~~~~~~p~L~~L~l~~~ 265 (481)
.|+.|++.+|.+.... +..-+..|+.|+++++..+ . ......|.|+.|.++.+
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 9999999988533221 1222478888888887622 1 23345677777776665
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.34 E-value=8e-08 Score=89.12 Aligned_cols=262 Identities=18% Similarity=0.196 Sum_probs=138.6
Q ss_pred eeEEEEEEEeeCChhhHHHHHHHHHh--CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCC
Q 036097 110 VEKLRFKASFLDDSELADRCVCYAIE--STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLP 187 (481)
Q Consensus 110 l~~l~l~~~~~~~~~~~~~~~~~~~~--~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 187 (481)
+.++.+... .-+...++|+..... +.+++.+++..+......++|..+..+ ......+|
T Consensus 32 ~~~l~lsgn--t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l-----------------~~aL~~~~ 92 (382)
T KOG1909|consen 32 LTKLDLSGN--TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML-----------------SKALLGCP 92 (382)
T ss_pred eEEEeccCC--chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH-----------------HHHHhcCC
Confidence 666666532 235667788877654 356666665543233333444322110 01234556
Q ss_pred cceEEEecceecCh---HHHHHHhcCCCccceeEeeeecCc-ceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEc
Q 036097 188 SLRKLRLAQVRASD---QVIENLVAGCPLIEDLIFEFCEGL-KSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVV 263 (481)
Q Consensus 188 ~L~~L~L~~~~~~~---~~l~~l~~~~p~Le~L~l~~~~~~-~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~ 263 (481)
+|++|+|++|-+.. ..+..++++|..|++|.+.+|.-- ..-...+ .-|..|..+ ...-+.|+|+.+..+
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~-~al~~l~~~------kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG-RALFELAVN------KKAASKPKLRVFICG 165 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH-HHHHHHHHH------hccCCCcceEEEEee
Confidence 77777777776543 677888899999999999988311 0000000 001111000 001123455555554
Q ss_pred CC---CCC---CceeccCCCCCcEEEEE---echhh---hHHhhhcCCcccEEEeccccccc----ccccccccCCcccE
Q 036097 264 SP---LPS---GKINEVSCKNLKSLFLC---ITSVV---DETLSYHITRLVVLECLGLIVCF----ELQNIKISSPSLKR 327 (481)
Q Consensus 264 ~~---~~~---~~~~~~~~~~L~~L~l~---~~~~~---~~~~~~~~~~L~~L~L~~~~~c~----~l~~l~~~~~~L~~ 327 (481)
.+ +++ ....+..++.|+.+.+. |.... +...+.+||+|+.|+|.+|.... .+.......+.|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 44 111 11234555667777666 33322 23445778888888888753211 11111223467888
Q ss_pred EEecCCCCccc---------ccccCCCcceeEecccccCCcchhhhhc---cCCCccEEEEeeChh--hHHHHHHHHhhc
Q 036097 328 LEIFKCTKLAA---------VEIETPNLSKCKYNGGVVPFSSSTALKL---LETDLNLYTINFDPQ--WYVKFIELIAKF 393 (481)
Q Consensus 328 L~l~~c~~l~~---------~~~~~p~L~~L~~~~~~~~~~~~~~l~~---~~~~L~~l~l~~~~~--~~~~~~~~~~~l 393 (481)
|++++|. +++ +....|+|+.+.+.++.+......++.. ..|.|++|.++.+.. -.+.+..+...+
T Consensus 246 l~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 246 LNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKF 324 (382)
T ss_pred ecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhc
Confidence 8888875 221 4455788888888888776543332211 468888888877653 223344444555
Q ss_pred cccee
Q 036097 394 HQWSK 398 (481)
Q Consensus 394 ~~L~~ 398 (481)
+....
T Consensus 325 ~~~~~ 329 (382)
T KOG1909|consen 325 DTAHV 329 (382)
T ss_pred ccccc
Confidence 43333
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.34 E-value=1.5e-06 Score=92.42 Aligned_cols=115 Identities=14% Similarity=0.123 Sum_probs=68.4
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
.+..+|++... ....+|..+. ++|+.|+|++|.+..+|.. .+++|++|++++|.+.. +..- -.++|+
T Consensus 178 ~~~~~L~L~~~----~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~---l~~nL~~L~Ls~N~Lts--LP~~--l~~~L~ 244 (754)
T PRK15370 178 NNKTELRLKIL----GLTTIPACIP--EQITTLILDNNELKSLPEN---LQGNIKTLYANSNQLTS--IPAT--LPDTIQ 244 (754)
T ss_pred cCceEEEeCCC----CcCcCCcccc--cCCcEEEecCCCCCcCChh---hccCCCEEECCCCcccc--CChh--hhcccc
Confidence 45666766654 4445665542 5788999998888766532 23588888888887653 1111 124688
Q ss_pred eeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEE-ecCCccEEEEcCC
Q 036097 216 DLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNI-NALNGHSITVVSP 265 (481)
Q Consensus 216 ~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~-~~p~L~~L~l~~~ 265 (481)
.|++++|. +..+...-..+|+.|+++++. +..+.. -.++|+.|+++++
T Consensus 245 ~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N 293 (754)
T PRK15370 245 EMELSINR-ITELPERLPSALQSLDLFHNK-ISCLPENLPEELRYLSVYDN 293 (754)
T ss_pred EEECcCCc-cCcCChhHhCCCCEEECcCCc-cCccccccCCCCcEEECCCC
Confidence 88888774 222211112567888887654 222221 1246777777776
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.30 E-value=7.5e-08 Score=99.65 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=40.3
Q ss_pred CeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccce
Q 036097 137 TVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIED 216 (481)
Q Consensus 137 ~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 216 (481)
.++.|.++.+ ....+|....+..+|++|.|.++.....| .....+.+|++|+++.+.+.... ..+..+..++.
T Consensus 69 ~L~~ln~s~n----~i~~vp~s~~~~~~l~~lnL~~n~l~~lP-~~~~~lknl~~LdlS~N~f~~~P--l~i~~lt~~~~ 141 (1081)
T KOG0618|consen 69 HLRQLNLSRN----YIRSVPSSCSNMRNLQYLNLKNNRLQSLP-ASISELKNLQYLDLSFNHFGPIP--LVIEVLTAEEE 141 (1081)
T ss_pred HHhhcccchh----hHhhCchhhhhhhcchhheeccchhhcCc-hhHHhhhcccccccchhccCCCc--hhHHhhhHHHH
Confidence 4444444443 33444555555566666666666553333 24445566666666666554311 12344555555
Q ss_pred eEeeee
Q 036097 217 LIFEFC 222 (481)
Q Consensus 217 L~l~~~ 222 (481)
+..+++
T Consensus 142 ~~~s~N 147 (1081)
T KOG0618|consen 142 LAASNN 147 (1081)
T ss_pred Hhhhcc
Confidence 555555
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.29 E-value=6.8e-07 Score=94.90 Aligned_cols=243 Identities=14% Similarity=0.086 Sum_probs=137.3
Q ss_pred CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097 163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK 242 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~ 242 (481)
.+...|+++++.+..+|... .+.|+.|+|++|.+.. +... ..++|++|++++|. +..+.....++|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N~Lts--LP~~--l~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI---PEQITTLILDNNELKS--LPEN--LQGNIKTLYANSNQ-LTSIPATLPDTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCccc---ccCCcEEEecCCCCCc--CChh--hccCCCEEECCCCc-cccCChhhhccccEEECc
Confidence 45788999998876665321 3579999999998753 2211 13589999999874 443322222689999999
Q ss_pred cCCCCceEEE-ecCCccEEEEcCC-CCCCceeccCCCCCcEEEEEechhhhHHhhhc-CCcccEEEeccccccccccccc
Q 036097 243 GGREAEEVNI-NALNGHSITVVSP-LPSGKINEVSCKNLKSLFLCITSVVDETLSYH-ITRLVVLECLGLIVCFELQNIK 319 (481)
Q Consensus 243 ~~~~~~~~~~-~~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~L~~~~~c~~l~~l~ 319 (481)
+|... .+.. -..+|+.|+++++ ....+..+ .++|+.|+++ +..+..+... .++|+.|++++|.+ +.++
T Consensus 250 ~N~L~-~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls--~N~Lt~LP~~lp~sL~~L~Ls~N~L----t~LP 320 (754)
T PRK15370 250 INRIT-ELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVY--DNSIRTLPAHLPSGITHLNVQSNSL----TALP 320 (754)
T ss_pred CCccC-cCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECC--CCccccCcccchhhHHHHHhcCCcc----ccCC
Confidence 88621 2211 1247899998877 22222222 3578888865 1112222111 23577777777432 2222
Q ss_pred c-cCCcccEEEecCCCCccccccc-CCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcc-cc
Q 036097 320 I-SSPSLKRLEIFKCTKLAAVEIE-TPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFH-QW 396 (481)
Q Consensus 320 ~-~~~~L~~L~l~~c~~l~~~~~~-~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~-~L 396 (481)
. ..++|+.|++++|. +..++.. .++|+.|.++++.+..... .-.++|+.|++..+. +..++..++ .|
T Consensus 321 ~~l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L~~LP~----~lp~~L~~LdLs~N~-----Lt~LP~~l~~sL 390 (754)
T PRK15370 321 ETLPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQITVLPE----TLPPTITTLDVSRNA-----LTNLPENLPAAL 390 (754)
T ss_pred ccccccceeccccCCc-cccCChhhcCcccEEECCCCCCCcCCh----hhcCCcCEEECCCCc-----CCCCCHhHHHHH
Confidence 1 23578888888764 4433321 3578888888776553222 123567777776554 111222221 23
Q ss_pred eeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097 397 SKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI 436 (481)
Q Consensus 397 ~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 436 (481)
+. |++++|....+|+.+..- ...++++..|++..+.
T Consensus 391 ~~---LdLs~N~L~~LP~sl~~~-~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 391 QI---MQASRNNLVRLPESLPHF-RGEGPQPTRIIVEYNP 426 (754)
T ss_pred HH---HhhccCCcccCchhHHHH-hhcCCCccEEEeeCCC
Confidence 33 777766666666542211 2223566777776654
No 27
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.28 E-value=5.2e-07 Score=58.14 Aligned_cols=34 Identities=38% Similarity=0.679 Sum_probs=31.7
Q ss_pred CCHHHHHHHHcCCChhHHHhhhcccccchhhhcc
Q 036097 20 LPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCT 53 (481)
Q Consensus 20 LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~ 53 (481)
||+|++.+||++|+..|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999986654
No 28
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.20 E-value=7.4e-10 Score=103.97 Aligned_cols=197 Identities=16% Similarity=0.095 Sum_probs=108.5
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcce-Ee
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKS-IK 229 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~-l~ 229 (481)
....+|..++....++.|+.+++.+...|+ ...+.+.|+.++.+++.+.. +..-++.|-+|++|+..++.-... -.
T Consensus 79 ~l~~lp~aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l~~s~n~~~e--l~~~i~~~~~l~dl~~~~N~i~slp~~ 155 (565)
T KOG0472|consen 79 KLSQLPAAIGELEALKSLNVSHNKLSELPE-QIGSLISLVKLDCSSNELKE--LPDSIGRLLDLEDLDATNNQISSLPED 155 (565)
T ss_pred hhhhCCHHHHHHHHHHHhhcccchHhhccH-HHhhhhhhhhhhccccceee--cCchHHHHhhhhhhhccccccccCchH
Confidence 556677777777777777777777765553 45566777777777765532 111123345566665554421100 01
Q ss_pred ec-----------------------CCCCCcEEEEccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEE
Q 036097 230 LF-----------------------GRSKLRDIKIKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFL 284 (481)
Q Consensus 230 i~-----------------------~~~~L~~L~l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 284 (481)
+. .+.+|++|+...+. .+..-.-.+.+|+-|++..+.-.+...|++|..|+++.+
T Consensus 156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHV 235 (565)
T ss_pred HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHh
Confidence 11 14555555554432 111111123444445555553334447778888887775
Q ss_pred Ee-chhhhH-HhhhcCCcccEEEeccccccccccccccc---CCcccEEEecCCCCcccccc--cCCCcceeEecccc
Q 036097 285 CI-TSVVDE-TLSYHITRLVVLECLGLIVCFELQNIKIS---SPSLKRLEIFKCTKLAAVEI--ETPNLSKCKYNGGV 355 (481)
Q Consensus 285 ~~-~~~~~~-~~~~~~~~L~~L~L~~~~~c~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~--~~p~L~~L~~~~~~ 355 (481)
.. .-+.++ ...++++++..|++.+|+ ++..+.. ..+|+.|++++. .++.++- +.-+|+.|.+.|++
T Consensus 236 g~N~i~~lpae~~~~L~~l~vLDLRdNk----lke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 236 GENQIEMLPAEHLKHLNSLLVLDLRDNK----LKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred cccHHHhhHHHHhcccccceeeeccccc----cccCchHHHHhhhhhhhcccCC-ccccCCcccccceeeehhhcCCc
Confidence 51 112232 345689999999999954 3333222 467889999984 4544332 22367777777755
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.11 E-value=5.7e-07 Score=77.85 Aligned_cols=101 Identities=24% Similarity=0.340 Sum_probs=33.2
Q ss_pred CeeEEEEEEeecCCcccccCCccc-CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 137 TVKELELHTILRGDRLYHLPQMVV-CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 137 ~l~~L~L~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
++++|+|..+ ....+. .+. .+.+|+.|++++|.+.++. ....+++|++|++++|.+++-. ..+...+|+|+
T Consensus 20 ~~~~L~L~~n----~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRGN----QISTIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-C-HHHHHH-TT--
T ss_pred cccccccccc----cccccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccc-cchHHhCCcCC
Confidence 5677888776 222232 233 4678999999999887664 4556889999999999885411 12234688999
Q ss_pred eeEeeeec--CcceE-eecCCCCCcEEEEccCC
Q 036097 216 DLIFEFCE--GLKSI-KLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 216 ~L~l~~~~--~~~~l-~i~~~~~L~~L~l~~~~ 245 (481)
+|++++|. .+..+ .+..+++|+.|++.+++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 99998773 22222 23345666666666554
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.99 E-value=7e-06 Score=76.47 Aligned_cols=36 Identities=25% Similarity=0.123 Sum_probs=18.7
Q ss_pred ccCCCCCcEEEEE---ech---hhhHHhhhcCCcccEEEecc
Q 036097 273 EVSCKNLKSLFLC---ITS---VVDETLSYHITRLVVLECLG 308 (481)
Q Consensus 273 ~~~~~~L~~L~l~---~~~---~~~~~~~~~~~~L~~L~L~~ 308 (481)
+..||+|++|+|+ ++. ..+..++.++..|++|.|.+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N 129 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNN 129 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhc
Confidence 3455566666655 322 22334455566666666655
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.96 E-value=2.2e-07 Score=77.72 Aligned_cols=137 Identities=18% Similarity=0.144 Sum_probs=65.8
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEee
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKL 230 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i 230 (481)
....+|+.+..+.+|+.|+++++.+.+.| +...++++|+.|++.-+++. .+..-++++|.||.|+++++..-+.
T Consensus 44 Kl~~vppnia~l~nlevln~~nnqie~lp-~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~--- 117 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQIEELP-TSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNEN--- 117 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccchhhhcC-hhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccc---
Confidence 34445555555666666666666665544 34455666666665544331 1222244556666666655421111
Q ss_pred cCCCCCcEEEEccCCCCceEEEecCCccEEEEcCC-CCCCceeccCCCCCcEEEEEech-hhhHHhhhcCCcccEEEecc
Q 036097 231 FGRSKLRDIKIKGGREAEEVNINALNGHSITVVSP-LPSGKINEVSCKNLKSLFLCITS-VVDETLSYHITRLVVLECLG 308 (481)
Q Consensus 231 ~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~ 308 (481)
.+..-.+.+..|+-|.++.+ .+-.+..++.+.+|+.|.+.-.+ -.++.-++.+..|++|.+.+
T Consensus 118 ---------------~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 118 ---------------SLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred ---------------cCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence 11111233444555555554 33345556666666666544111 12223334455555555555
No 32
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.89 E-value=7.1e-07 Score=91.73 Aligned_cols=165 Identities=22% Similarity=0.255 Sum_probs=97.3
Q ss_pred hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCe-eccCCC----CCCCcCCCcceEEEeccee-cChHHHHHHh
Q 036097 135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGC-ILLEFP----GRNSVKLPSLRKLRLAQVR-ASDQVIENLV 208 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~----~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~ 208 (481)
.++++.+.+..++ ......+-.....++.|+.|+++++ ...... ......+++|+.|++.++. ++|..+..+.
T Consensus 187 ~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCS-KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccc-cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3667777777652 1111123344567888888888873 211111 1123456888888888886 7777787777
Q ss_pred cCCCccceeEeeeecCcceEee----cCCCCCcEEEEccCCCCc-----eEEEecCCccEEEEcCCCCCCceeccCCCCC
Q 036097 209 AGCPLIEDLIFEFCEGLKSIKL----FGRSKLRDIKIKGGREAE-----EVNINALNGHSITVVSPLPSGKINEVSCKNL 279 (481)
Q Consensus 209 ~~~p~Le~L~l~~~~~~~~l~i----~~~~~L~~L~l~~~~~~~-----~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L 279 (481)
..||+|++|.+.+|..++...+ ..|++|++|+++.|..+. .+...+|+|+.|.+.+... |+.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------c~~l 337 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--------CPSL 337 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC--------CccH
Confidence 7888888888877775443222 135778888888776331 1223466666655444322 5555
Q ss_pred cEEEEE----ec-hhhhHHhhhcCCcccEEEecc
Q 036097 280 KSLFLC----IT-SVVDETLSYHITRLVVLECLG 308 (481)
Q Consensus 280 ~~L~l~----~~-~~~~~~~~~~~~~L~~L~L~~ 308 (481)
+.+.+. .. +........++++++.+.+..
T Consensus 338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~ 371 (482)
T KOG1947|consen 338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSY 371 (482)
T ss_pred HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhh
Confidence 555544 11 233344456677777777666
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.69 E-value=2.4e-06 Score=80.68 Aligned_cols=234 Identities=14% Similarity=0.092 Sum_probs=123.9
Q ss_pred CCeeEEEEEEeecCCcccccCCcccC-CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecc-eecChHHHHHHhcCCCc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVC-SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQ-VRASDQVIENLVAGCPL 213 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~~p~ 213 (481)
+...+++|+.+ ....+|...|. .++|++|+|++|.+..+.+..+.++++|.+|.+.+ +++.+ .....+.+...
T Consensus 67 ~~tveirLdqN----~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~s 141 (498)
T KOG4237|consen 67 PETVEIRLDQN----QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSS 141 (498)
T ss_pred CcceEEEeccC----CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHH
Confidence 45667777765 55677776654 78888888888888766666667788887777776 66644 11223444555
Q ss_pred cceeEeeeec--CcceEeecCCCCCcEEEEccCC--CC-ceEEEecCCccEEEEcCCC-------C-------CCceecc
Q 036097 214 IEDLIFEFCE--GLKSIKLFGRSKLRDIKIKGGR--EA-EEVNINALNGHSITVVSPL-------P-------SGKINEV 274 (481)
Q Consensus 214 Le~L~l~~~~--~~~~l~i~~~~~L~~L~l~~~~--~~-~~~~~~~p~L~~L~l~~~~-------~-------~~~~~~~ 274 (481)
|+.|.+.-|. ....-.+..+++|..|.+.++. .+ ........+++.+.+..+. . ..+..++
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 6666655432 1111112234677777766653 11 0011112222222221110 0 0000011
Q ss_pred CCC----------------------CCcEE--EEE----echhhhHHhhhcCCcccEEEecccccccccccccccCCccc
Q 036097 275 SCK----------------------NLKSL--FLC----ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLK 326 (481)
Q Consensus 275 ~~~----------------------~L~~L--~l~----~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~ 326 (481)
.+. .++.+ .+. ........-+..+|+|++|++++|++...-...--....++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 000 01111 000 11112234467899999999999765332222223346788
Q ss_pred EEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCCCccEEEE
Q 036097 327 RLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTI 376 (481)
Q Consensus 327 ~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l 376 (481)
+|.+... .+.. +..+...|++|+++|+.++.....++. ...+|..+.+
T Consensus 302 eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~-~~~~l~~l~l 353 (498)
T KOG4237|consen 302 ELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ-TLFSLSTLNL 353 (498)
T ss_pred hhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEeccccc-ccceeeeeeh
Confidence 8888763 3443 455667899999999877654443333 5566777776
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.68 E-value=1.2e-05 Score=69.64 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=20.1
Q ss_pred cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeeecCcceEe--e-cCCCC
Q 036097 160 VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFCEGLKSIK--L-FGRSK 235 (481)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~~~~~l~--i-~~~~~ 235 (481)
.++.+++.|+|.++.+..+.. ....+.+|+.|+|++|.+.. +. +..++.|++|++++|. +..+. + .++++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNR-ISSISEGLDKNLPN 89 (175)
T ss_dssp --------------------S---TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S-CHHHHHH-TT
T ss_pred ccccccccccccccccccccc-hhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCC-CCccccchHHhCCc
Confidence 356678999999998866542 22357889999999988754 32 3456778888887764 22221 1 12455
Q ss_pred CcEEEEccC
Q 036097 236 LRDIKIKGG 244 (481)
Q Consensus 236 L~~L~l~~~ 244 (481)
|+.|.++++
T Consensus 90 L~~L~L~~N 98 (175)
T PF14580_consen 90 LQELYLSNN 98 (175)
T ss_dssp --EEE-TTS
T ss_pred CCEEECcCC
Confidence 555555444
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.55 E-value=3.1e-05 Score=54.72 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=34.0
Q ss_pred CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097 163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC 222 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~ 222 (481)
++|++|++++|.+..++......+++|++|+++++.+..- ....+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 3566666666666655554555666666666666655321 1122455666666666654
No 36
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=1.1e-05 Score=82.87 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=31.3
Q ss_pred ccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhcc
Q 036097 15 DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCT 53 (481)
Q Consensus 15 d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~ 53 (481)
+.....|++....++...+..+......++++|......
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 456678888899998888888888888999999865443
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.52 E-value=7.9e-05 Score=52.59 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=49.8
Q ss_pred CCeeEEEEEEeecCCcccccCCccc-CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceec
Q 036097 136 STVKELELHTILRGDRLYHLPQMVV-CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRA 199 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 199 (481)
+++++|++..+ ....+|...+ .+++|++|++++|.+..+++.....+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n----~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN----KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS----TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC----CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46788888876 5667786554 599999999999999888777788999999999998864
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.46 E-value=4.1e-05 Score=72.61 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=52.4
Q ss_pred CCeeEEEEEEeecCCccccc-CCcccCCCCccEEEEcC-eeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 136 STVKELELHTILRGDRLYHL-PQMVVCSETVNVLDLFG-CILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
++++.|+|+.+ ....+ |..+..+++|..|-+-+ +++.+++...+.++..|+.|.+.-+++. ......+...++
T Consensus 91 ~~LRrLdLS~N----~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~ 165 (498)
T KOG4237|consen 91 HRLRRLDLSKN----NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPS 165 (498)
T ss_pred hhhceeccccc----chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhh
Confidence 68999999886 22233 33444577777777766 8888887666667777777777666552 333444555566
Q ss_pred cceeEeeee
Q 036097 214 IEDLIFEFC 222 (481)
Q Consensus 214 Le~L~l~~~ 222 (481)
|..|.+-++
T Consensus 166 l~lLslyDn 174 (498)
T KOG4237|consen 166 LSLLSLYDN 174 (498)
T ss_pred cchhcccch
Confidence 666655543
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=3.6e-05 Score=81.23 Aligned_cols=144 Identities=17% Similarity=0.174 Sum_probs=79.4
Q ss_pred CCccEEEEcCeeccC--CCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcce-EeecCCCCCcEE
Q 036097 163 ETVNVLDLFGCILLE--FPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKS-IKLFGRSKLRDI 239 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~-l~i~~~~~L~~L 239 (481)
.+|++|+++|..... .+.....-+|.|++|.+.+..+..+.+..+..++|+|..|+++++. +.. ..++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence 567777777754321 1111233578888888888877666677778888888888888763 222 234445666666
Q ss_pred EEccCCCCc--e--EEEecCCccEEEEcCC-CCCCc-------eeccCCCCCcEEEEE---echhhhHHhhhcCCcccEE
Q 036097 240 KIKGGREAE--E--VNINALNGHSITVVSP-LPSGK-------INEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVL 304 (481)
Q Consensus 240 ~l~~~~~~~--~--~~~~~p~L~~L~l~~~-~~~~~-------~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L 304 (481)
.+.+-.... . --....+|+.|+++.. ....+ ..-..+|+|+.|+.+ ++.+.+..+....|+|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 665432110 0 0123555666666554 11111 112335666666665 4445555555555555555
Q ss_pred Eec
Q 036097 305 ECL 307 (481)
Q Consensus 305 ~L~ 307 (481)
.+-
T Consensus 281 ~~~ 283 (699)
T KOG3665|consen 281 AAL 283 (699)
T ss_pred hhh
Confidence 443
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.38 E-value=2.2e-05 Score=79.86 Aligned_cols=198 Identities=18% Similarity=0.143 Sum_probs=117.2
Q ss_pred ceeEEEEEEEeeCChhhHHHHHH-HHHhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCC-
Q 036097 109 SVEKLRFKASFLDDSELADRCVC-YAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKL- 186 (481)
Q Consensus 109 ~l~~l~l~~~~~~~~~~~~~~~~-~~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~- 186 (481)
+++.|........|...+...-. .-+....+.+.+... +.....=|-.++.+.+|++|.|.+|.+...- +...+
T Consensus 56 ~~~~f~a~~s~~ads~vl~qLq~i~d~lqkt~~lkl~~~--pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~--GL~~lr 131 (1096)
T KOG1859|consen 56 PVDYFRAYVSDNADSRVLEQLQRILDFLQKTKVLKLLPS--PARDPTEPISIFPFRSLRVLELRGCDLSTAK--GLQELR 131 (1096)
T ss_pred CCceeEEecCCcccchHHHHHHHHHHHHhhheeeeeccc--CCCCCCCCceeccccceeeEEecCcchhhhh--hhHHHH
Confidence 37887776553344333222211 112245666666554 2222222888999999999999999874321 11111
Q ss_pred --------------------------------CcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCC
Q 036097 187 --------------------------------PSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRS 234 (481)
Q Consensus 187 --------------------------------~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~ 234 (481)
-.|.+.+.++|.+ ..++.-+.-.|.||.|+|+.|.--.--.+.-|+
T Consensus 132 ~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~ 209 (1096)
T KOG1859|consen 132 HQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVDNLRRLP 209 (1096)
T ss_pred HhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhHHHHhcc
Confidence 1222223333322 112222333577888888877422111334468
Q ss_pred CCcEEEEccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccc
Q 036097 235 KLRDIKIKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGL 309 (481)
Q Consensus 235 ~L~~L~l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~ 309 (481)
+||+|+++.+. .+..+....-.|..|.+.++.-.....+.++.+|+.|+++ +.+..-...+..+..|+.|.|.||
T Consensus 210 ~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 210 KLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred cccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999998876 4444444444488888888865566678899999999988 444333344566778899999997
Q ss_pred ccc
Q 036097 310 IVC 312 (481)
Q Consensus 310 ~~c 312 (481)
-+|
T Consensus 290 Pl~ 292 (1096)
T KOG1859|consen 290 PLC 292 (1096)
T ss_pred ccc
Confidence 654
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=6.9e-05 Score=68.53 Aligned_cols=190 Identities=16% Similarity=0.057 Sum_probs=120.5
Q ss_pred hhHHHHHHHHH-hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChH
Q 036097 124 ELADRCVCYAI-ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQ 202 (481)
Q Consensus 124 ~~~~~~~~~~~-~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 202 (481)
+..+.....+. ...+++++|..+. -....++...+.++|.|+.|+|++|.+.......+....+|++|.|.+..++=.
T Consensus 58 d~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~ 136 (418)
T KOG2982|consen 58 DNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT 136 (418)
T ss_pred CcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh
Confidence 33334333332 3578899988761 223344555556789999999999988554443445677999999998877657
Q ss_pred HHHHHhcCCCccceeEeeeec----CcceEe--ecCCCCCcEEEEccCC-----CCceEEEecCCccEEEEcCC---CCC
Q 036097 203 VIENLVAGCPLIEDLIFEFCE----GLKSIK--LFGRSKLRDIKIKGGR-----EAEEVNINALNGHSITVVSP---LPS 268 (481)
Q Consensus 203 ~l~~l~~~~p~Le~L~l~~~~----~~~~l~--i~~~~~L~~L~l~~~~-----~~~~~~~~~p~L~~L~l~~~---~~~ 268 (481)
....++...|.+++|+++.+. +++.-. -.+ +.++.|+...|. ....+....||+.++.+..+ ...
T Consensus 137 ~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s-~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s 215 (418)
T KOG2982|consen 137 QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS-TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTES 215 (418)
T ss_pred hhhhhhhcchhhhhhhhccchhhhhccccccccccc-hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchh
Confidence 777778889999999998773 122211 123 677888888876 22233345788888877766 222
Q ss_pred CceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccccccc
Q 036097 269 GKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFEL 315 (481)
Q Consensus 269 ~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l 315 (481)
.......+|.+-.|.+. +..=.-..-+..+|.|..|.+..|-+-..+
T Consensus 216 ~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 216 SEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 23344455555566655 222222344578889999888886543333
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.30 E-value=6.2e-05 Score=79.47 Aligned_cols=98 Identities=19% Similarity=0.131 Sum_probs=58.1
Q ss_pred CCccceeEeeeecCcce-E--eecC-CCCCcEEEEccCC----CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEE
Q 036097 211 CPLIEDLIFEFCEGLKS-I--KLFG-RSKLRDIKIKGGR----EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSL 282 (481)
Q Consensus 211 ~p~Le~L~l~~~~~~~~-l--~i~~-~~~L~~L~l~~~~----~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L 282 (481)
-.+|++|++++...+.. + .++. +|+|++|.+.+-. ....+-.+.|||.+|++++..-.....++.+++|+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 35778888876533211 1 1222 5888888777643 2223345677888888887755555667777777777
Q ss_pred EEE---echhhhHHhhhcCCcccEEEecc
Q 036097 283 FLC---ITSVVDETLSYHITRLVVLECLG 308 (481)
Q Consensus 283 ~l~---~~~~~~~~~~~~~~~L~~L~L~~ 308 (481)
.+. +....-..-+.++.+|+.|+++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 766 33322222234577777777776
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.26 E-value=7.2e-05 Score=81.08 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=35.6
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
+.++.|+|+.+ ....++|..+..+-+|++|++++..+...| .....++.|.+|++..+... ..+..+....++|+
T Consensus 571 ~~LrVLDLs~~---~~l~~LP~~I~~Li~LryL~L~~t~I~~LP-~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 571 PLLRVLDLSGN---SSLSKLPSSIGELVHLRYLDLSDTGISHLP-SGLGNLKKLIYLNLEVTGRL-ESIPGILLELQSLR 645 (889)
T ss_pred cceEEEECCCC---CccCcCChHHhhhhhhhcccccCCCccccc-hHHHHHHhhheecccccccc-ccccchhhhccccc
Confidence 44455555442 233455555555555555555555544333 23344445555555444221 11122233345555
Q ss_pred eeEee
Q 036097 216 DLIFE 220 (481)
Q Consensus 216 ~L~l~ 220 (481)
+|.+-
T Consensus 646 ~L~l~ 650 (889)
T KOG4658|consen 646 VLRLP 650 (889)
T ss_pred EEEee
Confidence 55544
No 44
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.19 E-value=8.4e-06 Score=68.36 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=75.0
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
.+++.|++.++ ...++|..+.++++|+.|+++-+++...| .++.++|.|+.|+|.++.+.+..+..-+..+..|+
T Consensus 56 ~nlevln~~nn----qie~lp~~issl~klr~lnvgmnrl~~lp-rgfgs~p~levldltynnl~e~~lpgnff~m~tlr 130 (264)
T KOG0617|consen 56 KNLEVLNLSNN----QIEELPTSISSLPKLRILNVGMNRLNILP-RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLR 130 (264)
T ss_pred hhhhhhhcccc----hhhhcChhhhhchhhhheecchhhhhcCc-cccCCCchhhhhhccccccccccCCcchhHHHHHH
Confidence 57888888776 67899999999999999999999885444 58889999999999999887755443344456677
Q ss_pred eeEeeeecC-cceEeecCCCCCcEEEEccC
Q 036097 216 DLIFEFCEG-LKSIKLFGRSKLRDIKIKGG 244 (481)
Q Consensus 216 ~L~l~~~~~-~~~l~i~~~~~L~~L~l~~~ 244 (481)
-|++++++. +-.-.++.+.+|+.|.+.++
T Consensus 131 alyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 131 ALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred HHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 777777641 11123444455555555544
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.19 E-value=8.4e-05 Score=67.99 Aligned_cols=195 Identities=13% Similarity=0.041 Sum_probs=112.1
Q ss_pred HhCCeeEEEEEEeecCCc-----ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-H-----
Q 036097 134 IESTVKELELHTILRGDR-----LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-Q----- 202 (481)
Q Consensus 134 ~~~~l~~L~L~~~~~~~~-----~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~----- 202 (481)
++..+..|.++..-.+.+ ..-+|..+..+.+|..+.++.|.-..+-+ ....-|.|.++......+.+ .
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~~~l~pe 258 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDVPSLLPE 258 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheec-eeecCchhheeeeecccccccccccch
Confidence 345777777765422222 22345455567899999999887543321 12234677777766543322 0
Q ss_pred -HHH---------------HHhcCCCccceeEeeeecCcceE--eecCCCCCcEEEEccCCC--CceEEEecCCccEEEE
Q 036097 203 -VIE---------------NLVAGCPLIEDLIFEFCEGLKSI--KLFGRSKLRDIKIKGGRE--AEEVNINALNGHSITV 262 (481)
Q Consensus 203 -~l~---------------~l~~~~p~Le~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~~--~~~~~~~~p~L~~L~l 262 (481)
.+. ..+-....|++++++++.- ..+ ++.-.|.++.|+++.+.. ... -...++|+.|++
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDL 336 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDL 336 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhccccccch-hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeec
Confidence 000 0112345688888887741 111 222248899999988762 222 236789999999
Q ss_pred cCC-CCCCceeccCCCCCcEEEEEechhhhH--HhhhcCCcccEEEeccccc--ccccccccccCCcccEEEecCCC
Q 036097 263 VSP-LPSGKINEVSCKNLKSLFLCITSVVDE--TLSYHITRLVVLECLGLIV--CFELQNIKISSPSLKRLEIFKCT 334 (481)
Q Consensus 263 ~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~L~~~~~--c~~l~~l~~~~~~L~~L~l~~c~ 334 (481)
+++ .......-..+-|+++|.++ ...+. ..+..+-+|+.|++.+|+. ...++. ....|.|+++.+.+.+
T Consensus 337 S~N~Ls~~~Gwh~KLGNIKtL~La--~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 337 SGNLLAECVGWHLKLGNIKTLKLA--QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNP 410 (490)
T ss_pred ccchhHhhhhhHhhhcCEeeeehh--hhhHhhhhhhHhhhhheeccccccchhhHHHhcc-cccccHHHHHhhcCCC
Confidence 988 22223333456677788765 22222 2345677889999988643 111222 2346788888887755
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.16 E-value=0.00014 Score=66.65 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=32.6
Q ss_pred HHHHHhcCCCccceeEeeeecC------cce----EeecCCCCCcEEEEccCC--CCceEEEecCCccEEEEcCC
Q 036097 203 VIENLVAGCPLIEDLIFEFCEG------LKS----IKLFGRSKLRDIKIKGGR--EAEEVNINALNGHSITVVSP 265 (481)
Q Consensus 203 ~l~~l~~~~p~Le~L~l~~~~~------~~~----l~i~~~~~L~~L~l~~~~--~~~~~~~~~p~L~~L~l~~~ 265 (481)
++..++-.|.+|..|.++...+ +.. +.+..+++|+.+.++.|. ....+....|.|.++.+...
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s 247 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNT 247 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecc
Confidence 3444555566666666665422 111 112224667777777665 33444455566666655443
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.0015 Score=60.04 Aligned_cols=177 Identities=12% Similarity=0.077 Sum_probs=90.3
Q ss_pred cCCCCCcEEEEE---ech-hhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc-----ccccCC
Q 036097 274 VSCKNLKSLFLC---ITS-VVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA-----VEIETP 344 (481)
Q Consensus 274 ~~~~~L~~L~l~---~~~-~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~p 344 (481)
..++.++.+++. +++ +.+..++.++|.|+.|+|+.|.+...+..++....+|+.|-+.+.. +.+ .....|
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcch
Confidence 345566666665 444 4566777888888888888877766676666666788888877643 222 444556
Q ss_pred CcceeEecccccCC--cchhhhhccCCCccEEEEeeChh-hHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCC
Q 036097 345 NLSKCKYNGGVVPF--SSSTALKLLETDLNLYTINFDPQ-WYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILP 421 (481)
Q Consensus 345 ~L~~L~~~~~~~~~--~~~~~l~~~~~~L~~l~l~~~~~-~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~ 421 (481)
.++.|.++.+...- ..-+|.+...+.+..+....|.. ......++-..|+++.+ +-+..+....... +...
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s---v~v~e~PlK~~s~---ek~s 220 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS---VFVCEGPLKTESS---EKGS 220 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh---eeeecCcccchhh---cccC
Confidence 66666665542110 00111112223344444444431 11233455566777766 5554332221110 1123
Q ss_pred CCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 422 PPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 422 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
.+++.+..|+|....... +..++. |...|.|.-|.+
T Consensus 221 e~~p~~~~LnL~~~~ids----wasvD~-Ln~f~~l~dlRv 256 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNIDS----WASVDA-LNGFPQLVDLRV 256 (418)
T ss_pred CCCCcchhhhhccccccc----HHHHHH-HcCCchhheeec
Confidence 334455566665544222 222332 344555555554
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.82 E-value=0.00028 Score=76.61 Aligned_cols=124 Identities=15% Similarity=0.084 Sum_probs=76.9
Q ss_pred cCCCCccEEEEcCee--ccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--eecCCCC
Q 036097 160 VCSETVNVLDLFGCI--LLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--KLFGRSK 235 (481)
Q Consensus 160 ~~~~~L~~L~L~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--~i~~~~~ 235 (481)
..|++|++|-+.++. +...+...+..+|.|+.|+|++|.-. ..++..++..-+|+.|++++.. +..+ .+..+.+
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKK 619 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCC-ccccchHHHHHHh
Confidence 356789888888885 43444333567899999999986432 3444446667778888888653 3322 3344677
Q ss_pred CcEEEEccCCCCceE---EEecCCccEEEEcCCC-CC---CceeccCCCCCcEEEEE
Q 036097 236 LRDIKIKGGREAEEV---NINALNGHSITVVSPL-PS---GKINEVSCKNLKSLFLC 285 (481)
Q Consensus 236 L~~L~l~~~~~~~~~---~~~~p~L~~L~l~~~~-~~---~~~~~~~~~~L~~L~l~ 285 (481)
|.+|++..+..+..+ ...+++|++|.+.+.. .. ....+..+.+|+.+...
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 888888766533222 2347888888887763 22 22234555555555555
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.34 E-value=0.012 Score=57.75 Aligned_cols=9 Identities=11% Similarity=-0.141 Sum_probs=5.4
Q ss_pred cccEEEecc
Q 036097 300 RLVVLECLG 308 (481)
Q Consensus 300 ~L~~L~L~~ 308 (481)
+|+.|.+..
T Consensus 178 SLk~L~ls~ 186 (426)
T PRK15386 178 SLQSITLHI 186 (426)
T ss_pred cCcEEEecc
Confidence 566666654
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.26 E-value=0.0024 Score=63.84 Aligned_cols=144 Identities=17% Similarity=0.155 Sum_probs=76.8
Q ss_pred CCCCccEEEEcCeeccCCCCCCCcCC-CcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeec-CCCCCcE
Q 036097 161 CSETVNVLDLFGCILLEFPGRNSVKL-PSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLF-GRSKLRD 238 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~-~~~~L~~ 238 (481)
....+..|++.++.+.++++ ....+ ++|+.|+++.+.+.. +..-+..+|.|+.|++.+|.-.+..... ..+.|+.
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccccCcc-ccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 34567777777777766543 22233 277777777776633 2122556777777777776422221111 2366777
Q ss_pred EEEccCCCCceEEE--ecC-CccEEEEcCC-CCCCceeccCCCCCcEEEEE-echhhhHHhhhcCCcccEEEecc
Q 036097 239 IKIKGGREAEEVNI--NAL-NGHSITVVSP-LPSGKINEVSCKNLKSLFLC-ITSVVDETLSYHITRLVVLECLG 308 (481)
Q Consensus 239 L~l~~~~~~~~~~~--~~p-~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~L~~L~L~~ 308 (481)
|.++++. +..+.. ..+ .|+++.++++ .......+..+.++..+.+. .....+...+..+++++.|++++
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN 264 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccc
Confidence 7776664 111111 233 3667766666 33444445555555555533 11111134455666666666666
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.15 E-value=0.013 Score=57.56 Aligned_cols=139 Identities=14% Similarity=0.210 Sum_probs=75.1
Q ss_pred ccCCCCCcEEEEEechhhhHHhhhcCCcccEEEeccccccccccccccc-CCcccEEEecCCCCcccccccCCCcceeEe
Q 036097 273 EVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKIS-SPSLKRLEIFKCTKLAAVEIETPNLSKCKY 351 (481)
Q Consensus 273 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~-~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~ 351 (481)
+..|.+++.|+++ ...+..+..-.++|+.|.+++ |.+++.++.. .++|+.|.+.+|.++..++ ++|++|.+
T Consensus 48 ~~~~~~l~~L~Is--~c~L~sLP~LP~sLtsL~Lsn---c~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L 119 (426)
T PRK15386 48 IEEARASGRLYIK--DCDIESLPVLPNELTEITIEN---CNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEI 119 (426)
T ss_pred HHHhcCCCEEEeC--CCCCcccCCCCCCCcEEEccC---CCCcccCCchhhhhhhheEccCcccccccc---cccceEEe
Confidence 4567888888866 223333332233689999988 8888766543 3589999999887665443 46777777
Q ss_pred cccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEE
Q 036097 352 NGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLN 431 (481)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~ 431 (481)
.+...... . .-.++|+.|.+..... ......+..+| .+|+.|.++++....+|+. +| .+|++|.
T Consensus 120 ~~n~~~~L-~----~LPssLk~L~I~~~n~--~~~~~lp~~LP--sSLk~L~Is~c~~i~LP~~-----LP--~SLk~L~ 183 (426)
T PRK15386 120 KGSATDSI-K----NVPNGLTSLSINSYNP--ENQARIDNLIS--PSLKTLSLTGCSNIILPEK-----LP--ESLQSIT 183 (426)
T ss_pred CCCCCccc-c----cCcchHhheecccccc--ccccccccccC--CcccEEEecCCCcccCccc-----cc--ccCcEEE
Confidence 65332211 1 1234566665522110 00000111121 2344477764434444432 33 4777777
Q ss_pred EEec
Q 036097 432 FSIS 435 (481)
Q Consensus 432 l~~~ 435 (481)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7653
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.12 E-value=0.0034 Score=40.73 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=20.0
Q ss_pred CccEEEEcCeeccCCCCCCCcCCCcceEEEecceecC
Q 036097 164 TVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRAS 200 (481)
Q Consensus 164 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 200 (481)
+|++|++++|.+.++++ ....+++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 56666666666655442 2445666666666666554
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.78 E-value=0.017 Score=50.40 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=39.0
Q ss_pred CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeee
Q 036097 161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFC 222 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~ 222 (481)
..+.|..|.|++|++..+.+....-+|+|+.|.|.+|.+.. +.+.. +..||.|++|.+-++
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN 123 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence 45677777777777766654444456777777777776644 33333 345777777776655
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.72 E-value=0.0036 Score=58.25 Aligned_cols=36 Identities=31% Similarity=0.612 Sum_probs=34.7
Q ss_pred CccCCCCC----HHHHHHHHcCCChhHHHhhhcccccchh
Q 036097 14 ADRISALP----EPLLQHIMSFLPSKDAVRTRLLSKIWEK 49 (481)
Q Consensus 14 ~d~i~~LP----d~iL~~Ils~L~~~d~~r~~~vskrW~~ 49 (481)
.|.|+.|| |+|-..||+||+..+++.+.+|||+|++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 68899999 9999999999999999999999999996
No 55
>PLN03150 hypothetical protein; Provisional
Probab=95.66 E-value=0.0083 Score=63.53 Aligned_cols=81 Identities=20% Similarity=0.136 Sum_probs=60.2
Q ss_pred CccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcce--EeecCCCCCcEEEE
Q 036097 164 TVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKS--IKLFGRSKLRDIKI 241 (481)
Q Consensus 164 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~--l~i~~~~~L~~L~l 241 (481)
.++.|+|+++.+....+.....+++|+.|+|++|.+... +...+..+++|+.|++++|..... -.+..+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 378899999888655445566789999999999987542 333367899999999998853322 23556799999999
Q ss_pred ccCC
Q 036097 242 KGGR 245 (481)
Q Consensus 242 ~~~~ 245 (481)
++|.
T Consensus 498 s~N~ 501 (623)
T PLN03150 498 NGNS 501 (623)
T ss_pred cCCc
Confidence 8875
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.51 E-value=0.021 Score=52.08 Aligned_cols=193 Identities=16% Similarity=0.104 Sum_probs=116.0
Q ss_pred CCCCccEEEEcCeeccCCCC----CCCcCCCcceEEEecceec---Ch------HHHHHHhcCCCccceeEeeeec-Ccc
Q 036097 161 CSETVNVLDLFGCILLEFPG----RNSVKLPSLRKLRLAQVRA---SD------QVIENLVAGCPLIEDLIFEFCE-GLK 226 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~---~~------~~l~~l~~~~p~Le~L~l~~~~-~~~ 226 (481)
....++.++||||.+..-.. ....+-++|+..+++.... .+ ..+...+..||+|+..+++.|. +.+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 46789999999998732100 1223457788888776522 12 2233446689999999999883 222
Q ss_pred eE-----eecCCCCCcEEEEccCC-CCc---eE------------EEecCCccEEEEcCC---CCCC---ceeccCCCCC
Q 036097 227 SI-----KLFGRSKLRDIKIKGGR-EAE---EV------------NINALNGHSITVVSP---LPSG---KINEVSCKNL 279 (481)
Q Consensus 227 ~l-----~i~~~~~L~~L~l~~~~-~~~---~~------------~~~~p~L~~L~l~~~---~~~~---~~~~~~~~~L 279 (481)
.. -+++-..|++|.+++|. ++. .+ ..+.|.|+++....+ .++. ...+..-.+|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 21 12333889999999996 111 11 136789999988776 2221 1233444788
Q ss_pred cEEEEE---echhhhHHh----hhcCCcccEEEecccccccc----cccccccCCcccEEEecCCCCc----cc-----c
Q 036097 280 KSLFLC---ITSVVDETL----SYHITRLVVLECLGLIVCFE----LQNIKISSPSLKRLEIFKCTKL----AA-----V 339 (481)
Q Consensus 280 ~~L~l~---~~~~~~~~~----~~~~~~L~~L~L~~~~~c~~----l~~l~~~~~~L~~L~l~~c~~l----~~-----~ 339 (481)
+.+.+. |....+..+ ...+.+|+.|+|.+|..... +......-+.|+.|.+..|--- .. -
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 999887 555544433 36789999999998532110 1111111356889999888511 11 1
Q ss_pred cccCCCcceeEecc
Q 036097 340 EIETPNLSKCKYNG 353 (481)
Q Consensus 340 ~~~~p~L~~L~~~~ 353 (481)
....|+|..|...-
T Consensus 268 e~~~p~l~~L~~~Y 281 (388)
T COG5238 268 EKFVPNLMPLPGDY 281 (388)
T ss_pred hhcCCCccccccch
Confidence 23357888776543
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.38 E-value=0.0015 Score=59.08 Aligned_cols=89 Identities=20% Similarity=0.186 Sum_probs=53.3
Q ss_pred cCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeeecC--cceE-ee
Q 036097 155 LPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFCEG--LKSI-KL 230 (481)
Q Consensus 155 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~~--~~~l-~i 230 (481)
+....-....|+.|++.++.+... .....+|+|++|.++.+.... ..+.-++..||+|.+|.+++|.. ++.+ .+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 443334456677777777765433 234457788888888884432 45555567788888888887742 1111 12
Q ss_pred cCCCCCcEEEEccCC
Q 036097 231 FGRSKLRDIKIKGGR 245 (481)
Q Consensus 231 ~~~~~L~~L~l~~~~ 245 (481)
..+++|+.|.+.+|.
T Consensus 113 ~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 113 KELENLKSLDLFNCS 127 (260)
T ss_pred hhhcchhhhhcccCC
Confidence 224556666666654
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.30 E-value=0.045 Score=47.80 Aligned_cols=78 Identities=23% Similarity=0.279 Sum_probs=53.1
Q ss_pred CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh--HHHHHHhcCCCccceeEeeeecC--cceE-eecCCCCCc
Q 036097 163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD--QVIENLVAGCPLIEDLIFEFCEG--LKSI-KLFGRSKLR 237 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~l~~l~~~~p~Le~L~l~~~~~--~~~l-~i~~~~~L~ 237 (481)
.....++|++|.+...+ ...++++|.+|.|..|.++. ..+. ...|+|..|.+.+++- +.++ .+.+||+|+
T Consensus 42 d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccchhhcc--cCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCccc
Confidence 45667788888775443 45578899999999998865 4443 3468899999988752 2222 345567777
Q ss_pred EEEEccCC
Q 036097 238 DIKIKGGR 245 (481)
Q Consensus 238 ~L~l~~~~ 245 (481)
.|.+-++.
T Consensus 117 ~Ltll~Np 124 (233)
T KOG1644|consen 117 YLTLLGNP 124 (233)
T ss_pred eeeecCCc
Confidence 77776664
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.00083 Score=61.07 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=67.9
Q ss_pred CCCcEEEEccCC-CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccc
Q 036097 234 SKLRDIKIKGGR-EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGL 309 (481)
Q Consensus 234 ~~L~~L~l~~~~-~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~ 309 (481)
.+.++|+.++|. ..-++-..+|.|+.|.++-+.......+..|++|++|.|. |.+-.-...+.++|+|+.|.|..|
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 556667776664 2222234578888888888766677789999999999987 555444566799999999999987
Q ss_pred ccccccc-----cccccCCcccEEEe
Q 036097 310 IVCFELQ-----NIKISSPSLKRLEI 330 (481)
Q Consensus 310 ~~c~~l~-----~l~~~~~~L~~L~l 330 (481)
-.|..-. ......|+|++|+=
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred CcccccchhHHHHHHHHcccchhccC
Confidence 6554322 22334788998863
No 60
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.18 E-value=0.0057 Score=61.14 Aligned_cols=163 Identities=20% Similarity=0.217 Sum_probs=107.5
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCC-CccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSE-TVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
..++.|.+... ....++....... +|+.|+++++.+...+ .....+++|+.|+++.+.+.+ +.......+.|
T Consensus 116 ~~l~~L~l~~n----~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L 188 (394)
T COG4886 116 TNLTSLDLDNN----NITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNL 188 (394)
T ss_pred cceeEEecCCc----ccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhhh--hhhhhhhhhhh
Confidence 46777777665 5677777777774 9999999999987664 245678999999999998854 33333368889
Q ss_pred ceeEeeeecCcceEee--cCCCCCcEEEEccCC--CCceEEEecCCccEEEEcCC-CCCCceeccCCCCCcEEEEE---e
Q 036097 215 EDLIFEFCEGLKSIKL--FGRSKLRDIKIKGGR--EAEEVNINALNGHSITVVSP-LPSGKINEVSCKNLKSLFLC---I 286 (481)
Q Consensus 215 e~L~l~~~~~~~~l~i--~~~~~L~~L~l~~~~--~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~---~ 286 (481)
+.|+++++. +..+.. .....|+.|.++++. ..........++..+.+.+. .......+..+++++.|++. +
T Consensus 189 ~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 189 NNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred hheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccc
Confidence 999999874 233322 122458888888874 12122223455555554444 22224667788888888877 2
Q ss_pred chhhhHHhhhcCCcccEEEeccc
Q 036097 287 TSVVDETLSYHITRLVVLECLGL 309 (481)
Q Consensus 287 ~~~~~~~~~~~~~~L~~L~L~~~ 309 (481)
+.- .. +....+++.|+++++
T Consensus 268 ~~i--~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 268 SSI--SS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccc--cc-ccccCccCEEeccCc
Confidence 221 11 677889999999884
No 61
>PLN03150 hypothetical protein; Provisional
Probab=94.89 E-value=0.022 Score=60.32 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=73.4
Q ss_pred eeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcccee
Q 036097 138 VKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDL 217 (481)
Q Consensus 138 l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 217 (481)
++.|+|..+ .-...+|..+..+++|+.|+|++|.+....+.....+++|+.|+|++|.+... +...+..+++|+.|
T Consensus 420 v~~L~L~~n---~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQ---GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCC---CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEE
Confidence 666776664 23457788888999999999999998654444667899999999999988643 33346789999999
Q ss_pred EeeeecCcceE--eecC-CCCCcEEEEccCC
Q 036097 218 IFEFCEGLKSI--KLFG-RSKLRDIKIKGGR 245 (481)
Q Consensus 218 ~l~~~~~~~~l--~i~~-~~~L~~L~l~~~~ 245 (481)
++++|.....+ .+.. ..++..+.+.++.
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCc
Confidence 99988532221 1111 1345566666654
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.88 E-value=0.012 Score=38.18 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=30.6
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCC
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEF 178 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~ 178 (481)
+++++|+++.+ ....+|..+.++++|+.|++++|.+.++
T Consensus 1 ~~L~~L~l~~N----~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN----QITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSS----S-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCC----CCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 36788888876 5557888788999999999999988654
No 63
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.10 E-value=0.032 Score=54.19 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=33.3
Q ss_pred cCCCCCHHHHHHHHcCCC-hhHHHhhhcccccchhhhc
Q 036097 16 RISALPEPLLQHIMSFLP-SKDAVRTRLLSKIWEKAWC 52 (481)
Q Consensus 16 ~i~~LPd~iL~~Ils~L~-~~d~~r~~~vskrW~~l~~ 52 (481)
.+++||+|+|..|..+|+ ..|++|.+.|||.||....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 367999999999999997 7999999999999998544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.90 E-value=0.012 Score=53.35 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=28.3
Q ss_pred CccceeEeeeecCcceEeecCCCCCcEEEEccC--C---CCceEEEecCCccEEEEcCC
Q 036097 212 PLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGG--R---EAEEVNINALNGHSITVVSP 265 (481)
Q Consensus 212 p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~--~---~~~~~~~~~p~L~~L~l~~~ 265 (481)
..|+.|++.++...+......+++||+|.++.+ + .+..+...+|+|+.++++++
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 344444444443222223334567777777666 2 33333345577777777776
No 65
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.61 E-value=0.1 Score=48.60 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=30.5
Q ss_pred ccCCCCCHHHHHHHHcC-----CChhHHHhhhcccccchh
Q 036097 15 DRISALPEPLLQHIMSF-----LPSKDAVRTRLLSKIWEK 49 (481)
Q Consensus 15 d~i~~LPd~iL~~Ils~-----L~~~d~~r~~~vskrW~~ 49 (481)
+.|..||||||..||.+ ++.+++-++|+|||.|+.
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 45679999999999975 456999999999999985
No 66
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=93.21 E-value=0.11 Score=29.34 Aligned_cols=25 Identities=48% Similarity=0.836 Sum_probs=21.7
Q ss_pred cceEEEecceecCh-HHHHHHhcCCC
Q 036097 188 SLRKLRLAQVRASD-QVIENLVAGCP 212 (481)
Q Consensus 188 ~L~~L~L~~~~~~~-~~l~~l~~~~p 212 (481)
+|++|.|.++.+.+ +.+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 48999999998866 58999999998
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.67 E-value=0.033 Score=48.56 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=56.4
Q ss_pred ccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce-ecChHHHHHHhcCCCccceeEeeeecCcceEee--
Q 036097 154 HLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV-RASDQVIENLVAGCPLIEDLIFEFCEGLKSIKL-- 230 (481)
Q Consensus 154 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i-- 230 (481)
++|..-..--.++.++-+++.+...--.....++.++.|.+..| ++.|..+..+-.-.|+|++|++++|..+++-.+
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 45543333334666777766553221123445677788888888 455577777777788999999999987665432
Q ss_pred -cCCCCCcEEEEcc
Q 036097 231 -FGRSKLRDIKIKG 243 (481)
Q Consensus 231 -~~~~~L~~L~l~~ 243 (481)
..+++|+.|.+.+
T Consensus 172 L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhhhhHHHHhcC
Confidence 2346677666654
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.61 E-value=0.0081 Score=54.86 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=40.2
Q ss_pred CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeeecCc-------ceEeecC
Q 036097 161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFCEGL-------KSIKLFG 232 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~~~-------~~l~i~~ 232 (481)
..+.|+.|.|+-|.+..+. ....|.+|++|-|..|.+.+ +.+.. +.+.|+|+.|-|..|... ....+..
T Consensus 39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 3455566666655553331 23456666666666666654 33332 456677777776654321 1122333
Q ss_pred CCCCcEEE
Q 036097 233 RSKLRDIK 240 (481)
Q Consensus 233 ~~~L~~L~ 240 (481)
+|+|++|+
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 56666664
No 69
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=91.14 E-value=0.01 Score=61.14 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=69.3
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
+.++.|+|+-+ ...... .+..|++|++|||++|.+..+|.....++. |..|.|.+|.++. +.. +.+..+|+
T Consensus 187 ~ale~LnLshN----k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~g-ie~LksL~ 257 (1096)
T KOG1859|consen 187 PALESLNLSHN----KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRG-IENLKSLY 257 (1096)
T ss_pred HHhhhhccchh----hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--hhh-HHhhhhhh
Confidence 56778888765 222332 566789999999999999878766666666 9999999887643 221 34567799
Q ss_pred eeEeeeecC--cceE-eecCCCCCcEEEEccCC
Q 036097 216 DLIFEFCEG--LKSI-KLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 216 ~L~l~~~~~--~~~l-~i~~~~~L~~L~l~~~~ 245 (481)
.|++++|-- ...+ .+.++..|+.|.+.++.
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 999998732 2222 23445777888887765
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.26 E-value=0.24 Score=45.45 Aligned_cols=198 Identities=13% Similarity=0.058 Sum_probs=99.2
Q ss_pred eeEEEEEEEeeCChhhHHHHHHHHHh--CCeeEEEEEEeecCCcccccCC-------cccCCCCccEEEEcCeeccCCCC
Q 036097 110 VEKLRFKASFLDDSELADRCVCYAIE--STVKELELHTILRGDRLYHLPQ-------MVVCSETVNVLDLFGCILLEFPG 180 (481)
Q Consensus 110 l~~l~l~~~~~~~~~~~~~~~~~~~~--~~l~~L~L~~~~~~~~~~~l~~-------~~~~~~~L~~L~L~~~~~~~~~~ 180 (481)
+..+.+... .-+.....|++...+ ++++..+++..+......+++. .+..||+|+..+||.|-+....
T Consensus 32 ~~evdLSGN--tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~- 108 (388)
T COG5238 32 LVEVDLSGN--TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF- 108 (388)
T ss_pred eeEEeccCC--cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc-
Confidence 444444422 225566777776553 4455555443321222223332 2234555555555555431110
Q ss_pred CCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE----------------eecCCCCCcEEEEccC
Q 036097 181 RNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI----------------KLFGRSKLRDIKIKGG 244 (481)
Q Consensus 181 ~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l----------------~i~~~~~L~~L~l~~~ 244 (481)
...+..++++-+.|++|.+.+|. +..+ ...+=|.|+.....++
T Consensus 109 --------------------~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 109 --------------------PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred --------------------chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 14455556666666666666552 1100 1111255666655554
Q ss_pred CC---C---ceEE-EecCCccEEEEcCCCCC-------CceeccCCCCCcEEEEE---e---chhhhHHhhhcCCcccEE
Q 036097 245 RE---A---EEVN-INALNGHSITVVSPLPS-------GKINEVSCKNLKSLFLC---I---TSVVDETLSYHITRLVVL 304 (481)
Q Consensus 245 ~~---~---~~~~-~~~p~L~~L~l~~~~~~-------~~~~~~~~~~L~~L~l~---~---~~~~~~~~~~~~~~L~~L 304 (481)
.. . .... .+..+|+.+.+..+... ....+..+.+|+.|+++ + +...+......-+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 40 0 0000 12246666666655211 12235667888888887 2 233445566777889999
Q ss_pred Eecccccccccc----cc-----cccCCcccEEEecCCC
Q 036097 305 ECLGLIVCFELQ----NI-----KISSPSLKRLEIFKCT 334 (481)
Q Consensus 305 ~L~~~~~c~~l~----~l-----~~~~~~L~~L~l~~c~ 334 (481)
.+.+ |---. .. ....|+|..|...+..
T Consensus 248 ~lnD---Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 248 RLND---CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred cccc---hhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 9998 74321 11 2235788888777643
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.15 E-value=0.04 Score=45.10 Aligned_cols=62 Identities=24% Similarity=0.306 Sum_probs=43.5
Q ss_pred CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecC
Q 036097 161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEG 224 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 224 (481)
....|+..+|++|.+.++|......+|.+++|+|.++.+.+-... +..+|.|+.|+++.|..
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPL 112 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcc
Confidence 445677778888887777766666778888888888877552222 55678888888877753
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.10 E-value=0.042 Score=55.30 Aligned_cols=102 Identities=12% Similarity=0.062 Sum_probs=56.2
Q ss_pred ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeeecCcceEeecCCCCCc
Q 036097 159 VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLR 237 (481)
Q Consensus 159 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~ 237 (481)
+..+.+|+.|++.++.+..+.. ....+++|+.|+++++.+++ ..+. .++.|+.|++.+|..-..-.+.++.+|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhccc-chhhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCccchhhh
Confidence 4456677777777777654431 14457777777777777654 3332 3444777777776422222223346666
Q ss_pred EEEEccCCCCceE---EEecCCccEEEEcCC
Q 036097 238 DIKIKGGREAEEV---NINALNGHSITVVSP 265 (481)
Q Consensus 238 ~L~l~~~~~~~~~---~~~~p~L~~L~l~~~ 265 (481)
.++++++.....- ....++++.+.+.++
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 6666666511111 134555666666555
No 73
>PF13013 F-box-like_2: F-box-like domain
Probab=87.79 E-value=0.47 Score=37.43 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=27.7
Q ss_pred cCCCCCHHHHHHHHcCCChhHHHhhhcccc
Q 036097 16 RISALPEPLLQHIMSFLPSKDAVRTRLLSK 45 (481)
Q Consensus 16 ~i~~LPd~iL~~Ils~L~~~d~~r~~~vsk 45 (481)
.+.+||+||+..||.+-+..+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 578899999999999999999999888887
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.28 E-value=0.12 Score=45.14 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=29.3
Q ss_pred hcCCcccEEEecccccccccccc-----cccCCcccEEEecCCCCccc----ccccCCCcceeEecc
Q 036097 296 YHITRLVVLECLGLIVCFELQNI-----KISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNG 353 (481)
Q Consensus 296 ~~~~~L~~L~L~~~~~c~~l~~l-----~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~ 353 (481)
.+++.++.|.+.+ |..+.+. ...+++|+.|+|++|+.+++ .....++|+.|.+.+
T Consensus 122 ~~l~~i~~l~l~~---ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 122 RDLRSIKSLSLAN---CKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hccchhhhheecc---ccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 3444555555555 5554422 23356666666666666655 223345666666555
No 75
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=86.99 E-value=0.26 Score=50.97 Aligned_cols=40 Identities=35% Similarity=0.625 Sum_probs=36.8
Q ss_pred CCCCccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhh
Q 036097 11 IDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKA 50 (481)
Q Consensus 11 ~~~~d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l 50 (481)
....|.++.||-|+..+||+||+.++++++++||+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 4557999999999999999999999999999999999863
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.33 E-value=0.52 Score=23.46 Aligned_cols=14 Identities=29% Similarity=0.261 Sum_probs=7.4
Q ss_pred CCccEEEEcCeecc
Q 036097 163 ETVNVLDLFGCILL 176 (481)
Q Consensus 163 ~~L~~L~L~~~~~~ 176 (481)
++|+.|+|++|.+.
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35777777777653
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.20 E-value=0.3 Score=39.85 Aligned_cols=57 Identities=11% Similarity=0.243 Sum_probs=21.8
Q ss_pred CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEee
Q 036097 161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFE 220 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 220 (481)
.|.+|+.+.+.. .+..+.......+++|+.+.+... +.. .-...+..|+.|+.+.+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEET
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccc-cceeeeeccccccccccc
Confidence 355666666653 232333334445556666666543 211 011124456556666664
No 78
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.58 E-value=0.16 Score=51.16 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=53.4
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~L 214 (481)
.+++.+++..+ ....+...+..+++|++|+|++|.+.++. ....++.|+.|++.+|.+.+ .. +..+++|
T Consensus 95 ~~l~~l~l~~n----~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~----~~~l~~L 164 (414)
T KOG0531|consen 95 KSLEALDLYDN----KIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISG----LESLKSL 164 (414)
T ss_pred cceeeeecccc----chhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccC----Cccchhh
Confidence 34555555443 33333333455677777777777775553 33445557777777776643 22 2235666
Q ss_pred ceeEeeeecCcceEe--ecCCCCCcEEEEccCC
Q 036097 215 EDLIFEFCEGLKSIK--LFGRSKLRDIKIKGGR 245 (481)
Q Consensus 215 e~L~l~~~~~~~~l~--i~~~~~L~~L~l~~~~ 245 (481)
+.++++++.....-. ...+.+++.+.+.++.
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 666776664211111 2344666666665553
No 79
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=82.98 E-value=0.072 Score=53.65 Aligned_cols=29 Identities=10% Similarity=0.002 Sum_probs=12.5
Q ss_pred ccEEEEcCC-CCCCceeccCCCCCcEEEEE
Q 036097 257 GHSITVVSP-LPSGKINEVSCKNLKSLFLC 285 (481)
Q Consensus 257 L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~ 285 (481)
|..|+++.+ ....++.|..+.+|+.|.|.
T Consensus 213 Li~lDfScNkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred eeeeecccCceeecchhhhhhhhheeeeec
Confidence 344444433 23344444444444444443
No 80
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=82.91 E-value=0.19 Score=50.79 Aligned_cols=100 Identities=19% Similarity=0.225 Sum_probs=52.9
Q ss_pred CeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccce
Q 036097 137 TVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIED 216 (481)
Q Consensus 137 ~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 216 (481)
.|+.|-+.++ ....+|..+...++|..|+.+.|.+...+ .....+..|+.|++..+++.+ .+.. +. +-.|..
T Consensus 144 pLkvli~sNN----kl~~lp~~ig~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~-lp~E-l~-~LpLi~ 215 (722)
T KOG0532|consen 144 PLKVLIVSNN----KLTSLPEEIGLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLED-LPEE-LC-SLPLIR 215 (722)
T ss_pred cceeEEEecC----ccccCCcccccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhh-CCHH-Hh-CCceee
Confidence 4555555554 44556666666666666666666664443 244556666666666665532 1111 11 333666
Q ss_pred eEeeeecCcceE--eecCCCCCcEEEEccCC
Q 036097 217 LIFEFCEGLKSI--KLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 217 L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~ 245 (481)
|++++|. +..+ .+..|..|+.|-+.++.
T Consensus 216 lDfScNk-is~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 216 LDFSCNK-ISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred eecccCc-eeecchhhhhhhhheeeeeccCC
Confidence 6666543 2222 33445666666666654
No 81
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=82.72 E-value=0.91 Score=24.25 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=11.8
Q ss_pred CccEEEEcCeeccCCC
Q 036097 164 TVNVLDLFGCILLEFP 179 (481)
Q Consensus 164 ~L~~L~L~~~~~~~~~ 179 (481)
+|++|+|++|.+..+|
T Consensus 1 ~L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIP 16 (22)
T ss_dssp TESEEEETSSEESEEG
T ss_pred CccEEECCCCcCEeCC
Confidence 4788888888776554
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.18 E-value=0.95 Score=24.68 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=11.4
Q ss_pred CcceEEEecceecChHHHHH
Q 036097 187 PSLRKLRLAQVRASDQVIEN 206 (481)
Q Consensus 187 ~~L~~L~L~~~~~~~~~l~~ 206 (481)
++|++|+|++|.++++.+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 56677777777766655544
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.64 E-value=0.83 Score=25.55 Aligned_cols=17 Identities=29% Similarity=0.768 Sum_probs=12.3
Q ss_pred CCcccEEEecCCCCccc
Q 036097 322 SPSLKRLEIFKCTKLAA 338 (481)
Q Consensus 322 ~~~L~~L~l~~c~~l~~ 338 (481)
|++|++|++++|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46777888888876654
No 84
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=76.93 E-value=0.81 Score=37.68 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=50.6
Q ss_pred HHHHHHHHHh-CCeeEEEEEEeecCCcccccCCccc-CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecC
Q 036097 126 ADRCVCYAIE-STVKELELHTILRGDRLYHLPQMVV-CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRAS 200 (481)
Q Consensus 126 ~~~~~~~~~~-~~l~~L~L~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 200 (481)
+.+-+..... -.+...+|+.+ ....+|..+. .++.++.|+|++|.+.++|.. ...+|.|+.|++..|.+.
T Consensus 42 i~davy~l~~~~el~~i~ls~N----~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 42 IADAVYMLSKGYELTKISLSDN----GFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLN 113 (177)
T ss_pred HHHHHHHHhCCceEEEEecccc----hhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccc
Confidence 3344444332 24556666665 5566776554 467899999999999988864 788999999999999774
No 85
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=71.72 E-value=6.1 Score=26.33 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=30.4
Q ss_pred CCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEEe
Q 036097 424 LSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIE 463 (481)
Q Consensus 424 l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 463 (481)
.++|+.+.+.+..+...- ..++.-++++++.|+++.|.
T Consensus 13 ~s~Lk~v~~~~f~g~~~e--~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKGFRGEENE--LEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEeeeCcHHH--HHHHHHHHhhhhhhcEEEEE
Confidence 478999999877655544 66778889999999999885
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.94 E-value=3.4 Score=41.91 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=19.2
Q ss_pred CCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeee
Q 036097 185 KLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFC 222 (481)
Q Consensus 185 ~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~ 222 (481)
.+|.+..++|+.|++-+ +.+..+.+..|.|..|+|+++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34555555555554433 444444445555555555554
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=64.51 E-value=17 Score=29.13 Aligned_cols=12 Identities=8% Similarity=-0.031 Sum_probs=4.8
Q ss_pred hcCCcccEEEec
Q 036097 296 YHITRLVVLECL 307 (481)
Q Consensus 296 ~~~~~L~~L~L~ 307 (481)
.++++|+.+.+.
T Consensus 55 ~~~~~l~~i~~~ 66 (129)
T PF13306_consen 55 SNCKSLESITFP 66 (129)
T ss_dssp TT-TT-EEEEET
T ss_pred eccccccccccc
Confidence 344445555553
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.29 E-value=5.8 Score=22.58 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=14.3
Q ss_pred CcceEEEecceecChHHHHHH
Q 036097 187 PSLRKLRLAQVRASDQVIENL 207 (481)
Q Consensus 187 ~~L~~L~L~~~~~~~~~l~~l 207 (481)
++|++|+|++|.+.++....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 467788888887777555443
No 89
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=62.06 E-value=7.3 Score=30.06 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.8
Q ss_pred ccCCCCCHHHHHHHHcCCChhHHHh
Q 036097 15 DRISALPEPLLQHIMSFLPSKDAVR 39 (481)
Q Consensus 15 d~i~~LPd~iL~~Ils~L~~~d~~r 39 (481)
..+..||.||-..|+++|+-.|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6789999999999999999999864
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=52.85 E-value=9.8 Score=20.95 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=11.4
Q ss_pred CCccEEEEcCeeccCCC
Q 036097 163 ETVNVLDLFGCILLEFP 179 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~ 179 (481)
++|++|+|++|.+..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 46777777777765554
No 91
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=52.85 E-value=9.8 Score=20.95 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=11.4
Q ss_pred CCccEEEEcCeeccCCC
Q 036097 163 ETVNVLDLFGCILLEFP 179 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~ 179 (481)
++|++|+|++|.+..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 46777777777765554
No 92
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=49.03 E-value=28 Score=24.86 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=29.6
Q ss_pred CCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEEeec
Q 036097 424 LSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYG 465 (481)
Q Consensus 424 l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 465 (481)
..+|+.+.+....+...- ..++.-+++++|.|+++.|.+.
T Consensus 4 ~~~Lk~v~i~~f~g~~~e--~~~~~~il~~a~~Lk~~~i~~~ 43 (72)
T smart00579 4 LSSLEVLEIKGYRGTEEE--KELVKYFLENAPCLKKLTISVE 43 (72)
T ss_pred hheEEEEEEEeccCcHHH--HHHHHHHHhcchhheEEEEEee
Confidence 356888888876544433 6677888999999999999543
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.82 E-value=9.7 Score=38.83 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=32.7
Q ss_pred CCCCccEEEEcCeeccCCCCCC--CcCCCcceEEEecce--ecCh-HHHHHHhcCCCccceeEeeeec
Q 036097 161 CSETVNVLDLFGCILLEFPGRN--SVKLPSLRKLRLAQV--RASD-QVIENLVAGCPLIEDLIFEFCE 223 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~--~~~~~~L~~L~L~~~--~~~~-~~l~~l~~~~p~Le~L~l~~~~ 223 (481)
+.+.+..++|++|++.++.... ....|+|++|+|++| .+.. ..+.+ -+-.-||+|.+.+|.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNP 281 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCc
Confidence 4566666677776665443222 224567777777776 3222 23322 123446777777664
No 94
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=33.11 E-value=37 Score=31.33 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=36.7
Q ss_pred CCccCCCCCHHHHHHHHcCCC-hhHHHhhhcccccc------hhhhccCCeeEeeccc
Q 036097 13 NADRISALPEPLLQHIMSFLP-SKDAVRTRLLSKIW------EKAWCTFPVLNFDEDL 63 (481)
Q Consensus 13 ~~d~i~~LPd~iL~~Ils~L~-~~d~~r~~~vskrW------~~l~~~~~~l~~~~~~ 63 (481)
.+-.+.+||.+++..|+.+|+ -+|+..++.|-..- +++|+..-..+|....
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQ 255 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQ 255 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 456788999999999999998 79999988774332 3456654444554443
No 95
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=28.27 E-value=14 Score=35.01 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhccCC
Q 036097 17 ISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFP 55 (481)
Q Consensus 17 i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~~~ 55 (481)
+..+|++++..|++++..+++++++.|++|-..+-+..|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 457899999999999999999999999999987655444
No 96
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=27.47 E-value=37 Score=19.08 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=12.3
Q ss_pred CCccEEEEcCeeccCCC
Q 036097 163 ETVNVLDLFGCILLEFP 179 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~ 179 (481)
++|+.|++++|.+...|
T Consensus 2 ~~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLTSLP 18 (26)
T ss_pred cccceeecCCCccccCc
Confidence 46788888888775554
No 97
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=25.79 E-value=3.4e+02 Score=21.91 Aligned_cols=117 Identities=10% Similarity=0.175 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhccCCCCCCCcceeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccccCCcc--cCCCCc
Q 036097 88 LLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMV--VCSETV 165 (481)
Q Consensus 88 ~~~~v~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~--~~~~~L 165 (481)
|.+.+...+.. ..... ++++.+.. .+...+...+...-...|++|.+.. ......+...+ -...++
T Consensus 3 ~~~~l~~~l~s-~~~l~-----vk~l~i~~---~~~~~~~~iL~~l~p~~L~~i~i~~---~~~~~~~~~i~~~eqWk~~ 70 (142)
T PF01827_consen 3 FFEKLQEILKS-KHKLK-----VKKLKINS---LNQSEVLSILPFLDPGVLEEIRIND---EEEEEDFDEIVELEQWKNA 70 (142)
T ss_pred HHHHHHHHHcC-CCCee-----EEEEEEEc---CCHHHHHHHHhcCCCCcCEEEECcC---cccccchhheeehHHhcee
Confidence 44455566666 44433 77777663 3466777777777667799999821 22223333222 134677
Q ss_pred cEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHH---HHHhcCCCccceeEe
Q 036097 166 NVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVI---ENLVAGCPLIEDLIF 219 (481)
Q Consensus 166 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l---~~l~~~~p~Le~L~l 219 (481)
+.+.+.+...... ....+.++....+.--.++.+.+ ...+..-+..+...+
T Consensus 71 k~~~i~~~~~~~~---~l~~f~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 71 KEFKIGGFVIDSF---PLENFSHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred heeEecccccccH---HHHhCCCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEE
Confidence 8888776544211 23345555556554334443333 333444555555555
No 98
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=24.30 E-value=53 Score=18.43 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=8.9
Q ss_pred CCccEEEEcCeecc
Q 036097 163 ETVNVLDLFGCILL 176 (481)
Q Consensus 163 ~~L~~L~L~~~~~~ 176 (481)
.+|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45667777776653
Done!