Query 036097
Match_columns 481
No_of_seqs 212 out of 2433
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 15:58:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 1E-27 3.5E-32 251.2 14.9 424 18-467 14-526 (592)
2 2p1m_B Transport inhibitor res 99.9 6E-28 2.1E-32 253.1 12.5 424 14-467 3-519 (594)
3 2ast_B S-phase kinase-associat 99.9 6.7E-23 2.3E-27 199.1 10.2 259 13-354 5-282 (336)
4 3rgz_A Protein brassinosteroid 99.7 1.1E-18 3.7E-23 188.0 5.7 305 135-462 177-521 (768)
5 3rgz_A Protein brassinosteroid 99.7 9.2E-18 3.1E-22 180.7 6.3 238 136-379 100-353 (768)
6 4fmz_A Internalin; leucine ric 99.7 6.4E-17 2.2E-21 157.5 11.5 291 135-462 43-340 (347)
7 4eco_A Uncharacterized protein 99.7 2.1E-17 7.1E-22 174.0 8.1 281 135-433 205-544 (636)
8 2id5_A Lingo-1, leucine rich r 99.7 4.5E-17 1.5E-21 165.7 9.5 232 136-378 32-281 (477)
9 4ecn_A Leucine-rich repeat pro 99.7 3.7E-17 1.2E-21 176.0 9.1 311 135-462 447-813 (876)
10 3ogk_B Coronatine-insensitive 99.7 2.1E-17 7.3E-22 172.7 6.3 334 110-462 140-545 (592)
11 3vq2_A TLR4, TOLL-like recepto 99.7 1.7E-16 5.6E-21 166.5 10.4 56 253-308 326-385 (606)
12 1o6v_A Internalin A; bacterial 99.6 5.9E-16 2E-20 157.0 13.2 268 159-462 108-382 (466)
13 3v47_A TOLL-like receptor 5B a 99.6 1E-16 3.5E-21 162.0 6.4 308 136-462 54-402 (455)
14 4fmz_A Internalin; leucine ric 99.6 9.2E-16 3.1E-20 149.3 12.7 274 160-465 41-322 (347)
15 3t6q_A CD180 antigen; protein- 99.6 1.4E-16 4.8E-21 167.1 6.6 156 295-462 274-432 (606)
16 1o6v_A Internalin A; bacterial 99.6 1.4E-15 4.9E-20 154.1 13.7 289 135-462 67-360 (466)
17 2id5_A Lingo-1, leucine rich r 99.6 1.4E-16 4.8E-21 162.1 6.2 126 158-285 75-208 (477)
18 3o6n_A APL1; leucine-rich repe 99.6 1.1E-16 3.7E-21 158.5 4.6 271 136-436 69-350 (390)
19 2p1m_B Transport inhibitor res 99.6 8.1E-16 2.8E-20 160.8 10.4 150 134-285 64-243 (594)
20 1z7x_W Ribonuclease inhibitor; 99.6 2.8E-17 9.5E-22 166.5 -0.8 343 110-462 5-405 (461)
21 4eco_A Uncharacterized protein 99.6 7.6E-17 2.6E-21 169.7 1.8 287 154-462 197-543 (636)
22 3t6q_A CD180 antigen; protein- 99.6 1.2E-15 4E-20 160.0 10.6 284 137-436 255-558 (606)
23 2z7x_B TOLL-like receptor 1, v 99.6 1.2E-15 4E-20 157.0 9.9 149 296-462 321-475 (520)
24 2z81_A CD282 antigen, TOLL-lik 99.6 1.2E-15 4.2E-20 157.9 9.7 170 136-309 26-206 (549)
25 1ziw_A TOLL-like receptor 3; i 99.6 3E-15 1E-19 159.1 12.6 288 159-462 268-616 (680)
26 2z81_A CD282 antigen, TOLL-lik 99.6 1.2E-15 3.9E-20 158.1 8.6 56 395-462 449-504 (549)
27 4ecn_A Leucine-rich repeat pro 99.6 7.1E-16 2.4E-20 166.0 7.1 287 155-463 440-784 (876)
28 2z63_A TOLL-like receptor 4, v 99.6 1.3E-15 4.4E-20 158.5 8.2 153 294-462 368-525 (570)
29 3vq2_A TLR4, TOLL-like recepto 99.6 7.2E-16 2.5E-20 161.7 6.1 262 159-436 281-556 (606)
30 3oja_B Anopheles plasmodium-re 99.6 3.5E-16 1.2E-20 163.6 3.2 275 135-436 74-356 (597)
31 4fcg_A Uncharacterized protein 99.6 1.7E-14 5.9E-19 139.1 14.4 225 130-377 75-309 (328)
32 1z7x_W Ribonuclease inhibitor; 99.6 1.9E-15 6.6E-20 152.9 7.5 343 110-462 30-434 (461)
33 2z63_A TOLL-like receptor 4, v 99.6 2.3E-15 8E-20 156.5 6.9 105 135-245 51-160 (570)
34 3v47_A TOLL-like receptor 5B a 99.6 2.8E-15 9.5E-20 151.5 6.7 288 135-436 78-406 (455)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.2E-14 4.2E-19 150.9 11.4 148 296-462 350-504 (562)
36 2z7x_B TOLL-like receptor 1, v 99.5 1.5E-14 5.3E-19 148.6 11.9 284 136-435 21-409 (520)
37 3j0a_A TOLL-like receptor 5; m 99.5 1.4E-14 4.8E-19 157.6 12.0 100 255-356 266-374 (844)
38 3j0a_A TOLL-like receptor 5; m 99.5 1.2E-14 4E-19 158.1 11.4 286 135-436 23-373 (844)
39 1ziw_A TOLL-like receptor 3; i 99.5 8.8E-15 3E-19 155.5 9.8 83 136-222 97-181 (680)
40 3bz5_A Internalin-J, INLJ; leu 99.5 1.8E-14 6.3E-19 145.3 10.6 292 135-462 41-346 (457)
41 1xku_A Decorin; proteoglycan, 99.5 2.9E-14 9.9E-19 137.7 10.3 262 163-462 52-326 (330)
42 3o6n_A APL1; leucine-rich repe 99.5 1.9E-13 6.5E-18 135.1 16.0 252 135-408 92-350 (390)
43 3oja_B Anopheles plasmodium-re 99.5 4.3E-15 1.5E-19 155.3 4.1 294 135-462 50-352 (597)
44 3g06_A SSPH2 (leucine-rich rep 99.5 9.9E-14 3.4E-18 144.4 13.7 256 136-437 40-296 (622)
45 4fcg_A Uncharacterized protein 99.5 1.5E-13 5.2E-18 132.5 13.3 226 162-407 80-311 (328)
46 3bz5_A Internalin-J, INLJ; leu 99.5 7.1E-14 2.4E-18 141.0 10.0 154 136-308 64-221 (457)
47 2ft3_A Biglycan; proteoglycan, 99.5 3.3E-14 1.1E-18 137.5 7.0 277 164-462 34-327 (332)
48 2z80_A TOLL-like receptor 2, v 99.5 4.6E-13 1.6E-17 130.5 14.0 255 151-439 42-315 (353)
49 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.7E-13 5.7E-18 142.3 11.4 83 324-410 332-416 (562)
50 1jl5_A Outer protein YOPM; leu 99.5 1.3E-13 4.6E-18 138.8 9.9 178 163-356 131-309 (454)
51 2z66_A Variable lymphocyte rec 99.4 2.7E-13 9.4E-18 129.3 10.6 225 151-380 18-259 (306)
52 3g06_A SSPH2 (leucine-rich rep 99.4 3.9E-13 1.3E-17 140.0 11.9 251 163-462 40-291 (622)
53 2ast_B S-phase kinase-associat 99.4 1.3E-13 4.5E-18 133.3 7.1 225 127-379 37-282 (336)
54 1ogq_A PGIP-2, polygalacturona 99.4 1E-13 3.5E-18 132.8 6.2 193 136-334 50-255 (313)
55 3o53_A Protein LRIM1, AGAP0063 99.4 4.8E-13 1.6E-17 128.4 9.8 230 162-405 33-270 (317)
56 3oja_A Leucine-rich immune mol 99.4 9.3E-13 3.2E-17 133.9 11.5 226 162-398 33-266 (487)
57 3zyi_A Leucine-rich repeat-con 99.4 7.6E-13 2.6E-17 133.5 10.4 62 160-222 96-157 (452)
58 2z80_A TOLL-like receptor 2, v 99.4 1.5E-12 5E-17 126.9 11.3 238 136-380 52-312 (353)
59 1xku_A Decorin; proteoglycan, 99.4 8.5E-13 2.9E-17 127.3 8.7 210 136-357 52-276 (330)
60 1ogq_A PGIP-2, polygalacturona 99.4 6.9E-13 2.3E-17 127.0 7.0 239 110-355 52-302 (313)
61 1jl5_A Outer protein YOPM; leu 99.3 1.5E-12 5.1E-17 131.2 9.5 175 163-358 111-291 (454)
62 3zyj_A Leucine-rich repeat-con 99.3 1.5E-12 5E-17 130.9 9.4 217 152-378 55-288 (440)
63 3zyj_A Leucine-rich repeat-con 99.3 1.8E-12 6E-17 130.3 8.8 214 136-357 64-292 (440)
64 3zyi_A Leucine-rich repeat-con 99.3 2.1E-12 7.2E-17 130.2 8.5 220 151-380 65-301 (452)
65 3o53_A Protein LRIM1, AGAP0063 99.3 1.4E-12 4.9E-17 125.0 6.3 233 184-462 31-269 (317)
66 1ozn_A Reticulon 4 receptor; N 99.3 5E-12 1.7E-16 119.2 9.3 112 151-265 22-139 (285)
67 2ft3_A Biglycan; proteoglycan, 99.3 1.8E-12 6.1E-17 125.2 5.6 274 137-435 34-330 (332)
68 2z66_A Variable lymphocyte rec 99.3 1.5E-11 5.1E-16 117.2 11.0 232 166-436 10-259 (306)
69 1ozn_A Reticulon 4 receptor; N 99.2 2.8E-12 9.6E-17 121.0 4.7 197 135-357 31-238 (285)
70 4g8a_A TOLL-like receptor 4; l 99.2 9.2E-12 3.2E-16 130.8 7.2 83 136-222 100-183 (635)
71 2ca6_A RAN GTPase-activating p 99.2 1.7E-12 5.8E-17 128.1 1.3 88 136-223 32-133 (386)
72 3oja_A Leucine-rich immune mol 99.2 1.3E-11 4.4E-16 125.5 7.7 204 136-357 34-250 (487)
73 1wwl_A Monocyte differentiatio 99.2 2.4E-12 8.3E-17 123.1 1.9 199 161-378 93-305 (312)
74 1h6u_A Internalin H; cell adhe 99.2 3.2E-11 1.1E-15 115.0 9.2 160 135-308 40-204 (308)
75 2o6q_A Variable lymphocyte rec 99.2 2.1E-11 7.2E-16 114.0 7.5 180 152-356 28-217 (270)
76 1h6u_A Internalin H; cell adhe 99.2 7.4E-11 2.5E-15 112.5 10.7 161 161-333 39-205 (308)
77 2z62_A TOLL-like receptor 4, v 99.1 2.2E-11 7.5E-16 114.2 5.0 200 151-357 18-237 (276)
78 2z62_A TOLL-like receptor 4, v 99.1 1.6E-10 5.6E-15 108.2 11.0 188 187-378 28-233 (276)
79 1p9a_G Platelet glycoprotein I 99.1 2.4E-10 8.2E-15 107.9 11.1 168 160-333 7-182 (290)
80 3rfs_A Internalin B, repeat mo 99.1 8.4E-11 2.9E-15 110.0 7.0 80 136-223 41-120 (272)
81 1wwl_A Monocyte differentiatio 99.1 1.6E-10 5.6E-15 110.3 8.4 131 130-265 89-238 (312)
82 2xwt_C Thyrotropin receptor; s 99.1 8.7E-10 3E-14 100.9 12.7 90 152-245 23-116 (239)
83 2ca6_A RAN GTPase-activating p 99.1 5.1E-11 1.8E-15 117.4 4.3 94 152-245 21-133 (386)
84 4glp_A Monocyte differentiatio 99.1 7.4E-11 2.5E-15 112.6 4.7 220 110-358 66-308 (310)
85 3goz_A Leucine-rich repeat-con 99.1 1.8E-10 6.2E-15 112.4 7.6 234 161-436 20-295 (362)
86 2o6q_A Variable lymphocyte rec 99.0 1.8E-10 6.2E-15 107.6 6.3 124 136-265 37-167 (270)
87 2xwt_C Thyrotropin receptor; s 99.0 2.2E-10 7.6E-15 104.9 6.7 189 136-353 31-235 (239)
88 4glp_A Monocyte differentiatio 99.0 3.4E-10 1.2E-14 108.0 6.7 223 136-380 64-305 (310)
89 1p9a_G Platelet glycoprotein I 99.0 2.9E-10 1E-14 107.3 6.0 186 136-333 10-205 (290)
90 3goz_A Leucine-rich repeat-con 99.0 5E-10 1.7E-14 109.3 6.8 84 136-223 22-120 (362)
91 3rfs_A Internalin B, repeat mo 99.0 1.5E-10 5.1E-15 108.3 2.8 182 161-353 39-231 (272)
92 1h6t_A Internalin B; cell adhe 98.9 1.1E-09 3.9E-14 103.3 7.6 100 136-245 46-145 (291)
93 1m9s_A Internalin B; cell inva 98.9 1.4E-09 4.8E-14 113.0 7.9 161 135-309 42-207 (605)
94 1h6t_A Internalin B; cell adhe 98.9 1.9E-09 6.6E-14 101.7 7.7 163 161-334 44-211 (291)
95 4ezg_A Putative uncharacterize 98.9 1.7E-09 5.9E-14 95.8 6.7 101 136-244 44-146 (197)
96 3m19_A Variable lymphocyte rec 98.9 9.1E-10 3.1E-14 101.6 4.7 91 151-245 25-118 (251)
97 1m9s_A Internalin B; cell inva 98.9 1.4E-09 4.6E-14 113.1 5.9 163 161-334 41-208 (605)
98 4g8a_A TOLL-like receptor 4; l 98.9 3.7E-09 1.3E-13 110.9 8.9 193 233-435 370-577 (635)
99 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 1.5E-09 5.1E-14 73.6 3.4 40 13-52 5-44 (53)
100 4ezg_A Putative uncharacterize 98.8 2.5E-09 8.7E-14 94.7 5.8 140 162-309 43-191 (197)
101 3m19_A Variable lymphocyte rec 98.8 4.7E-09 1.6E-13 96.8 6.8 169 163-357 14-192 (251)
102 4ay9_X Follicle-stimulating ho 98.8 2.5E-08 8.5E-13 96.7 11.1 93 151-245 20-115 (350)
103 4ay9_X Follicle-stimulating ho 98.7 3E-08 1E-12 96.2 9.9 194 136-338 30-238 (350)
104 3cvr_A Invasion plasmid antige 98.7 3.4E-08 1.2E-12 101.5 10.3 131 134-285 57-188 (571)
105 1xeu_A Internalin C; cellular 98.7 1.8E-08 6E-13 93.6 5.7 57 161-222 39-95 (263)
106 1xeu_A Internalin C; cellular 98.6 6.1E-09 2.1E-13 96.7 2.0 160 162-333 18-182 (263)
107 2je0_A Acidic leucine-rich nuc 98.6 3.2E-08 1.1E-12 83.1 5.8 82 136-222 17-98 (149)
108 2ell_A Acidic leucine-rich nuc 98.6 1E-08 3.6E-13 88.1 2.4 104 136-245 24-131 (168)
109 3cvr_A Invasion plasmid antige 98.6 1.5E-07 5E-12 96.8 10.7 107 163-285 59-168 (571)
110 2o6s_A Variable lymphocyte rec 98.6 1.9E-08 6.5E-13 89.8 2.8 89 152-244 19-110 (208)
111 2v9t_B SLIT homolog 2 protein 98.5 1E-07 3.5E-12 85.9 4.9 136 151-310 22-163 (220)
112 3e6j_A Variable lymphocyte rec 98.5 1.2E-07 4.1E-12 85.9 5.4 135 151-310 30-170 (229)
113 2ell_A Acidic leucine-rich nuc 98.5 6.5E-08 2.2E-12 83.0 3.4 58 162-223 23-82 (168)
114 3e4g_A ATP synthase subunit S, 98.5 1.5E-07 5E-12 80.5 5.4 94 153-246 51-151 (176)
115 2o6s_A Variable lymphocyte rec 98.5 7.5E-08 2.6E-12 85.8 3.6 104 136-245 28-135 (208)
116 3sb4_A Hypothetical leucine ri 98.4 6.1E-07 2.1E-11 86.0 10.1 32 322-354 225-260 (329)
117 2v9t_B SLIT homolog 2 protein 98.4 1.1E-07 3.7E-12 85.7 3.1 104 136-245 32-139 (220)
118 2v70_A SLIT-2, SLIT homolog 2 98.4 1.3E-07 4.5E-12 85.1 3.2 69 152-223 23-92 (220)
119 2v70_A SLIT-2, SLIT homolog 2 98.3 2.1E-07 7.1E-12 83.8 3.6 104 136-244 32-139 (220)
120 3e6j_A Variable lymphocyte rec 98.3 2.6E-07 9E-12 83.7 4.2 104 136-245 40-146 (229)
121 2xot_A Amphoterin-induced prot 98.3 2.1E-07 7.2E-12 90.6 3.0 155 151-310 29-200 (361)
122 2xot_A Amphoterin-induced prot 98.3 1.8E-07 6.3E-12 91.0 1.6 144 136-285 39-197 (361)
123 1a9n_A U2A', U2A'; complex (nu 98.2 4.2E-07 1.4E-11 78.6 2.8 59 160-223 16-75 (176)
124 1ds9_A Outer arm dynein; leuci 98.2 5.3E-08 1.8E-12 86.2 -3.7 65 154-222 39-103 (198)
125 2ra8_A Uncharacterized protein 98.2 9.7E-07 3.3E-11 85.5 4.6 60 203-263 163-227 (362)
126 3sb4_A Hypothetical leucine ri 98.1 1.6E-06 5.5E-11 83.1 5.5 229 110-350 27-327 (329)
127 3e4g_A ATP synthase subunit S, 98.1 1.6E-06 5.6E-11 74.0 4.7 80 256-338 62-154 (176)
128 2ra8_A Uncharacterized protein 98.1 6.1E-06 2.1E-10 79.9 9.4 122 88-221 93-228 (362)
129 2wfh_A SLIT homolog 2 protein 98.1 1.8E-06 6.3E-11 75.8 4.3 68 154-222 45-112 (193)
130 3un9_A NLR family member X1; l 98.1 8.3E-08 2.8E-12 93.6 -5.6 88 134-223 70-166 (372)
131 2je0_A Acidic leucine-rich nuc 98.0 4.3E-06 1.5E-10 69.9 5.5 14 295-308 60-73 (149)
132 1a9n_A U2A', U2A'; complex (nu 98.0 2.1E-06 7.2E-11 74.1 3.1 130 183-334 15-151 (176)
133 2o6r_A Variable lymphocyte rec 98.0 2.3E-06 7.9E-11 73.9 3.3 69 152-223 19-87 (177)
134 3l2o_B F-box only protein 4; s 98.0 1.1E-06 3.9E-11 80.1 1.2 34 16-49 4-37 (312)
135 1w8a_A SLIT protein; signaling 98.0 1.8E-06 6.3E-11 75.7 2.5 91 151-245 19-113 (192)
136 4fdw_A Leucine rich hypothetic 97.9 1.5E-05 5.1E-10 78.4 7.8 31 255-285 248-279 (401)
137 2e31_A FBS1, F-box only protei 97.9 4.5E-06 1.6E-10 77.2 3.7 38 15-52 49-87 (297)
138 1w8a_A SLIT protein; signaling 97.9 3.9E-06 1.3E-10 73.6 3.1 103 136-244 29-136 (192)
139 1dce_A Protein (RAB geranylger 97.9 3.5E-06 1.2E-10 86.9 3.1 79 136-223 441-519 (567)
140 2o6r_A Variable lymphocyte rec 97.9 6.9E-06 2.3E-10 70.9 4.4 103 136-244 28-134 (177)
141 1dce_A Protein (RAB geranylger 97.9 4.1E-06 1.4E-10 86.3 3.3 117 164-306 442-567 (567)
142 2wfh_A SLIT homolog 2 protein 97.9 7.1E-06 2.4E-10 72.0 3.6 89 151-244 21-112 (193)
143 3g39_A Variable lymphocyte rec 97.8 7.5E-06 2.6E-10 70.2 3.2 90 151-244 20-112 (170)
144 2r9u_A Variable lymphocyte rec 97.8 1.1E-05 3.9E-10 69.4 3.9 90 151-244 23-115 (174)
145 3v7d_B Cell division control p 97.6 1.2E-05 4.1E-10 80.4 1.8 40 13-52 11-50 (464)
146 3un9_A NLR family member X1; l 97.6 2.3E-05 7.8E-10 76.3 3.3 160 276-436 71-250 (372)
147 4fs7_A Uncharacterized protein 97.6 4.7E-05 1.6E-09 74.8 5.0 61 155-220 62-125 (394)
148 1ds9_A Outer arm dynein; leuci 97.5 1.6E-05 5.6E-10 69.9 0.9 102 134-244 46-150 (198)
149 2r9u_A Variable lymphocyte rec 97.5 4.7E-05 1.6E-09 65.4 3.6 83 136-223 33-116 (174)
150 3g39_A Variable lymphocyte rec 97.5 5.2E-05 1.8E-09 64.9 3.6 83 136-223 30-113 (170)
151 4b8c_D Glucose-repressible alc 97.5 1.8E-05 6E-10 84.2 0.2 60 160-222 221-280 (727)
152 4b8c_D Glucose-repressible alc 97.5 2.1E-05 7.1E-10 83.6 0.6 102 136-245 224-327 (727)
153 2ovr_B FBW7, F-BOX/WD repeat p 97.4 6.5E-05 2.2E-09 74.7 3.6 37 13-49 15-51 (445)
154 4fdw_A Leucine rich hypothetic 97.4 0.00024 8.2E-09 69.7 7.1 140 161-308 178-332 (401)
155 1p22_A F-BOX/WD-repeat protein 97.3 3.9E-05 1.3E-09 76.2 0.6 37 13-49 7-47 (435)
156 2ifg_A High affinity nerve gro 97.1 0.00027 9.3E-09 67.9 3.4 91 151-245 20-114 (347)
157 4gt6_A Cell surface protein; l 96.8 0.0043 1.5E-07 60.6 9.8 11 452-462 375-385 (394)
158 4fs7_A Uncharacterized protein 96.7 0.0039 1.4E-07 60.9 8.9 34 183-220 158-193 (394)
159 4gt6_A Cell surface protein; l 96.7 0.0054 1.9E-07 59.9 9.8 99 342-462 263-364 (394)
160 1io0_A Tropomodulin; LRR prote 96.7 0.00023 8E-09 61.7 -0.4 33 187-219 93-128 (185)
161 1io0_A Tropomodulin; LRR prote 96.6 0.00071 2.4E-08 58.6 2.1 63 160-222 33-103 (185)
162 2ifg_A High affinity nerve gro 96.3 0.0012 4.2E-08 63.2 1.8 82 136-223 31-114 (347)
163 3rw6_A Nuclear RNA export fact 95.4 0.0061 2.1E-07 55.8 2.3 61 136-199 170-232 (267)
164 3rw6_A Nuclear RNA export fact 95.1 0.0044 1.5E-07 56.7 0.5 61 161-223 168-231 (267)
165 4h09_A Hypothetical leucine ri 93.6 0.29 1E-05 47.0 9.9 73 136-220 46-121 (379)
166 1pgv_A TMD-1, tropomodulin TMD 88.1 0.082 2.8E-06 45.7 -0.4 100 123-222 26-136 (197)
167 4h09_A Hypothetical leucine ri 85.7 1.9 6.4E-05 41.2 7.8 210 152-376 102-340 (379)
168 3rfe_A Platelet glycoprotein I 83.6 0.72 2.5E-05 36.8 3.1 44 154-199 24-67 (130)
169 1pgv_A TMD-1, tropomodulin TMD 75.0 3.4 0.00012 35.4 4.8 19 290-308 32-50 (197)
170 3rfe_A Platelet glycoprotein I 38.2 15 0.0005 28.9 2.0 52 167-223 12-66 (130)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1e-27 Score=251.24 Aligned_cols=424 Identities=13% Similarity=0.075 Sum_probs=237.6
Q ss_pred CCCCHHHHHHHHcCC-ChhHHHhhhcccccchhhhccCC-eeEeeccchhhH--HHHHH-hh--cCch---hh---hHH-
Q 036097 18 SALPEPLLQHIMSFL-PSKDAVRTRLLSKIWEKAWCTFP-VLNFDEDLFERE--LLEMR-AA--RGDV---QK---FNQ- 83 (481)
Q Consensus 18 ~~LPd~iL~~Ils~L-~~~d~~r~~~vskrW~~l~~~~~-~l~~~~~~~~~~--~~~~~-~~--~~~~---~~---~~~- 83 (481)
++||||+|.+||+|| +.+|++++++|||||++++...+ .+.+.. .+... ....+ +. .-+. +. +..
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 92 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI 92 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCS
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccc
Confidence 489999999999999 79999999999999998764433 222211 11100 00000 00 0000 00 000
Q ss_pred --HHHH-HHHHHHHHHHhccCCCCCCCcceeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccccCCccc
Q 036097 84 --ARGK-LLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVV 160 (481)
Q Consensus 84 --~~~~-~~~~v~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~~ 160 (481)
.... ...++..+....+. ++.+.+... .. ......|+......++++|++..+. ......++....
T Consensus 93 ~~~~~~~~~~~l~~l~~~~~~--------L~~L~L~~~-~i-~~~~~~~l~~~~~~~L~~L~L~~~~-~~~~~~l~~~~~ 161 (592)
T 3ogk_B 93 PENWGGYVTPWVTEISNNLRQ--------LKSVHFRRM-IV-SDLDLDRLAKARADDLETLKLDKCS-GFTTDGLLSIVT 161 (592)
T ss_dssp CTTSCCBCHHHHHHHHHHCTT--------CCEEEEESC-BC-CHHHHHHHHHHHGGGCCEEEEESCE-EEEHHHHHHHHH
T ss_pred cccccccchHHHHHHHhhCCC--------CCeEEeecc-Ee-cHHHHHHHHHhccccCcEEECcCCC-CcCHHHHHHHHh
Confidence 0000 00111122212221 666666643 11 1222334444433458888887651 122334444445
Q ss_pred CCCCccEEEEcCeeccCCCC----CCCcCCCcceEEEecceecC---hHHHHHHhcCCCccceeEeeeecCcce-EeecC
Q 036097 161 CSETVNVLDLFGCILLEFPG----RNSVKLPSLRKLRLAQVRAS---DQVIENLVAGCPLIEDLIFEFCEGLKS-IKLFG 232 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~---~~~l~~l~~~~p~Le~L~l~~~~~~~~-l~i~~ 232 (481)
.|++|++|+|++|.+.+... .....+++|++|+++++.++ ...+..++..||+|++|++++|..... -.+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 78999999999987643311 12246789999999988775 467777788899999999988742110 01112
Q ss_pred CCCCcEEEEc---------------------------cCC--CCceEEEecCCccEEEEcCCCCC---CceeccCCCCCc
Q 036097 233 RSKLRDIKIK---------------------------GGR--EAEEVNINALNGHSITVVSPLPS---GKINEVSCKNLK 280 (481)
Q Consensus 233 ~~~L~~L~l~---------------------------~~~--~~~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~~L~ 280 (481)
+++|+.|.+. ++. .+..+...+++|++|+++++.-. ....+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 3445555444 322 11222234667777777776311 112356777888
Q ss_pred EEEEE--echhhhHHhhhcCCcccEEEecc-c------ccccccc-----cccccCCcccEEEecCCCCccc-----ccc
Q 036097 281 SLFLC--ITSVVDETLSYHITRLVVLECLG-L------IVCFELQ-----NIKISSPSLKRLEIFKCTKLAA-----VEI 341 (481)
Q Consensus 281 ~L~l~--~~~~~~~~~~~~~~~L~~L~L~~-~------~~c~~l~-----~l~~~~~~L~~L~l~~c~~l~~-----~~~ 341 (481)
.|++. +++..+..+...+++|++|++.+ + ..|..++ .+...+++|+.|++ +|..+.+ +..
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGT 400 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHh
Confidence 88776 55566666667778888888772 0 0012222 22334678888888 3444443 334
Q ss_pred cCCCcceeEecc----cccCCc----chhhhhccCCCccEEEEeeChh-hH-HHHHHHHhhcccceeeEEEEEEeeceee
Q 036097 342 ETPNLSKCKYNG----GVVPFS----SSTALKLLETDLNLYTINFDPQ-WY-VKFIELIAKFHQWSKVLNLLSECGESVI 411 (481)
Q Consensus 342 ~~p~L~~L~~~~----~~~~~~----~~~~l~~~~~~L~~l~l~~~~~-~~-~~~~~~~~~l~~L~~l~~L~i~~~~~~~ 411 (481)
.+|+|+.|.+.+ +.++.. ....+...+++|+.+++..|.+ .. ..+..+...+++|+. |.++++....
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~---L~L~~n~l~~ 477 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW---MLLGYVGESD 477 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE---EEECSCCSSH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE---eeccCCCCCH
Confidence 578888888853 233331 1222334688888888876542 11 223334444555555 8888664221
Q ss_pred --echhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE-eecCc
Q 036097 412 --VPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI-EYGRA 467 (481)
Q Consensus 412 --~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l-~~~~~ 467 (481)
++.. ...+++|++|+|+.+. .+ ...++.+...+|+|+.|.+ +|...
T Consensus 478 ~~~~~~-----~~~~~~L~~L~l~~n~-l~----~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 478 EGLMEF-----SRGCPNLQKLEMRGCC-FS----ERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHH-----HTCCTTCCEEEEESCC-CB----HHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHH-----HhcCcccCeeeccCCC-Cc----HHHHHHHHHhcCccCeeECcCCcCC
Confidence 2211 3346889999999987 34 3345666678999999999 66543
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=6e-28 Score=253.06 Aligned_cols=424 Identities=14% Similarity=0.132 Sum_probs=241.5
Q ss_pred CccCCCCCHHHHHHHHcCCC-hhHHHhhhcccccchhhhcc-CCeeEeeccchhh-HHHHHH-h-----------hcCch
Q 036097 14 ADRISALPEPLLQHIMSFLP-SKDAVRTRLLSKIWEKAWCT-FPVLNFDEDLFER-ELLEMR-A-----------ARGDV 78 (481)
Q Consensus 14 ~d~i~~LPd~iL~~Ils~L~-~~d~~r~~~vskrW~~l~~~-~~~l~~~~~~~~~-~~~~~~-~-----------~~~~~ 78 (481)
.|+++.||||||.+||+||+ .+|++++++|||||+++... ...+.+....... ...-.+ + ...+.
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 82 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF 82 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence 58999999999999999999 99999999999999987321 2223332211000 000000 0 00000
Q ss_pred ----hhhHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccc
Q 036097 79 ----QKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYH 154 (481)
Q Consensus 79 ----~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~ 154 (481)
..|. ..+..++..+....+. ++.+.+... ........... ...+++++|++..+. ......
T Consensus 83 ~l~~~~~~---~~~~~~l~~l~~~~~~--------L~~L~L~~~-~~~~~~~~~l~--~~~~~L~~L~L~~~~-~~~~~~ 147 (594)
T 2p1m_B 83 NLVPDGWG---GYVYPWIEAMSSSYTW--------LEEIRLKRM-VVTDDCLELIA--KSFKNFKVLVLSSCE-GFSTDG 147 (594)
T ss_dssp TCSCTTSC---CBCHHHHHHHHHHCTT--------CCEEEEESC-BCCHHHHHHHH--HHCTTCCEEEEESCE-EEEHHH
T ss_pred cccccccc---chhhHHHHHHHHhCCC--------CCeEEeeCc-EEcHHHHHHHH--HhCCCCcEEeCCCcC-CCCHHH
Confidence 0000 0011223333333222 888888754 22222222111 124789999988651 122233
Q ss_pred cCCcccCCCCccEEEEcCeeccCCCC----CCCcCCCcceEEEeccee--cChHHHHHHhcCCCccceeEeeeecCcceE
Q 036097 155 LPQMVVCSETVNVLDLFGCILLEFPG----RNSVKLPSLRKLRLAQVR--ASDQVIENLVAGCPLIEDLIFEFCEGLKSI 228 (481)
Q Consensus 155 l~~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l 228 (481)
++.....|++|++|+|++|.+.+... .....+++|++|+++++. +++..+..+...||+|++|++++|..+..+
T Consensus 148 l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l 227 (594)
T 2p1m_B 148 LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227 (594)
T ss_dssp HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH
T ss_pred HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH
Confidence 55555578999999999998654321 122367899999999885 666778887888999999999988443331
Q ss_pred --eecCCCCCcEEEEccCC-------------------CCceE--------------EEecCCccEEEEcCCCCC---Cc
Q 036097 229 --KLFGRSKLRDIKIKGGR-------------------EAEEV--------------NINALNGHSITVVSPLPS---GK 270 (481)
Q Consensus 229 --~i~~~~~L~~L~l~~~~-------------------~~~~~--------------~~~~p~L~~L~l~~~~~~---~~ 270 (481)
.+..+++|+.|.+..+. .+..+ ...+++|++|+++++.-. ..
T Consensus 228 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~ 307 (594)
T 2p1m_B 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307 (594)
T ss_dssp HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHH
T ss_pred HHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHH
Confidence 11234667777654331 11111 114678888888887421 12
Q ss_pred eeccCCCCCcEEEEE--echhhhHHhhhcCCcccEEEeccc-----ccccccc-----cccccCCcccEEEecCCCCccc
Q 036097 271 INEVSCKNLKSLFLC--ITSVVDETLSYHITRLVVLECLGL-----IVCFELQ-----NIKISSPSLKRLEIFKCTKLAA 338 (481)
Q Consensus 271 ~~~~~~~~L~~L~l~--~~~~~~~~~~~~~~~L~~L~L~~~-----~~c~~l~-----~l~~~~~~L~~L~l~~c~~l~~ 338 (481)
..+..+++|++|.+. +++..+..+...+++|+.|++.+. ..|..++ .+...+++|+.|.+ +|..+.+
T Consensus 308 ~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~ 386 (594)
T 2p1m_B 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTN 386 (594)
T ss_dssp HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCH
T ss_pred HHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCH
Confidence 235678888888887 555666667777888888888430 0033333 22234788888855 4455543
Q ss_pred -----ccccCCCcceeEec--c----cccCC----cchhhhhccCCCccEEEEeeChhhHH-HHHHHHhhcccceeeEEE
Q 036097 339 -----VEIETPNLSKCKYN--G----GVVPF----SSSTALKLLETDLNLYTINFDPQWYV-KFIELIAKFHQWSKVLNL 402 (481)
Q Consensus 339 -----~~~~~p~L~~L~~~--~----~~~~~----~~~~~l~~~~~~L~~l~l~~~~~~~~-~~~~~~~~l~~L~~l~~L 402 (481)
+...+|+|+.|.+. + +.++. .....+...+++|+.+++.. ...+ .+..+...+++|+. |
T Consensus 387 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~---L 461 (594)
T 2p1m_B 387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEM---L 461 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCE---E
T ss_pred HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccE---e
Confidence 33457888888887 3 23331 11222334788888888844 2222 22333334555665 8
Q ss_pred EEEeecee-eechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE-eecCc
Q 036097 403 LSECGESV-IVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI-EYGRA 467 (481)
Q Consensus 403 ~i~~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l-~~~~~ 467 (481)
.++++... .....+ ...+++|+.|+|+.+.. + ...+..+...+|+|+.|.+ +|...
T Consensus 462 ~L~~~~i~~~~~~~l----~~~~~~L~~L~L~~n~~-~----~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 462 SVAFAGDSDLGMHHV----LSGCDSLRKLEIRDCPF-G----DKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEESCCSSHHHHHHH----HHHCTTCCEEEEESCSC-C----HHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred eccCCCCcHHHHHHH----HhcCCCcCEEECcCCCC-c----HHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 88866421 111111 12267899999998875 3 2344556677999999999 76643
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=6.7e-23 Score=199.07 Aligned_cols=259 Identities=17% Similarity=0.154 Sum_probs=148.8
Q ss_pred CCccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhccCCeeEeeccchhhHHHHHHhhcCchhhhHHHHHHHHHHH
Q 036097 13 NADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAARGDVQKFNQARGKLLNYW 92 (481)
Q Consensus 13 ~~d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 92 (481)
+...+++|||||+.+||+||+.+|+++++.|||+|+++... |.+
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~~----------------------------------- 48 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ESL----------------------------------- 48 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-STT-----------------------------------
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-chh-----------------------------------
Confidence 34568999999999999999999999999999999997532 110
Q ss_pred HHHHHhccCCCCCCCcceeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcC
Q 036097 93 KQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFG 172 (481)
Q Consensus 93 ~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 172 (481)
++.+.+... ... ...+.....++++.+++..+ .....+..++.+++|++|++++
T Consensus 49 -----------------~~~l~l~~~-~~~----~~~~~~~~~~~l~~L~l~~n----~l~~~~~~~~~~~~L~~L~L~~ 102 (336)
T 2ast_B 49 -----------------WQTLDLTGK-NLH----PDVTGRLLSQGVIAFRCPRS----FMDQPLAEHFSPFRVQHMDLSN 102 (336)
T ss_dssp -----------------SSEEECTTC-BCC----HHHHHHHHHTTCSEEECTTC----EECSCCCSCCCCBCCCEEECTT
T ss_pred -----------------heeeccccc-cCC----HHHHHhhhhccceEEEcCCc----cccccchhhccCCCCCEEEccC
Confidence 111111100 000 11223333356666666543 2223333456778888888888
Q ss_pred eeccCC-CCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE----eecCCCCCcEEEEccCCCC
Q 036097 173 CILLEF-PGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI----KLFGRSKLRDIKIKGGREA 247 (481)
Q Consensus 173 ~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l----~i~~~~~L~~L~l~~~~~~ 247 (481)
|.+... .+.....+++|++|++++|.+++..+.. +..+++|++|++++|..+... .+..+++|+.|++++|..+
T Consensus 103 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 876421 1123446778888888888776554443 455788888888877544321 1233566666666665211
Q ss_pred ceEEEecCCccEEEEcCCCCCCceeccCCC-CCcEEEEE-----echhhhHHhhhcCCcccEEEeccccccccccc----
Q 036097 248 EEVNINALNGHSITVVSPLPSGKINEVSCK-NLKSLFLC-----ITSVVDETLSYHITRLVVLECLGLIVCFELQN---- 317 (481)
Q Consensus 248 ~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~-~L~~L~l~-----~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~---- 317 (481)
... .....+..++ +|++|+++ +++..+...+..+++|+.|++++ |..++.
T Consensus 182 ~~~-----------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~---~~~l~~~~~~ 241 (336)
T 2ast_B 182 TEK-----------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD---SVMLKNDCFQ 241 (336)
T ss_dssp CHH-----------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT---CTTCCGGGGG
T ss_pred ChH-----------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC---CCcCCHHHHH
Confidence 100 0112233444 44444443 33355566667778888888887 443221
Q ss_pred ccccCCcccEEEecCCCCcccc----cccCCCcceeEeccc
Q 036097 318 IKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGG 354 (481)
Q Consensus 318 l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~ 354 (481)
....+++|++|++++|..+.+. ...+|+|+.|.+.++
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 1123577777777777544321 234566777766665
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=1.1e-18 Score=187.97 Aligned_cols=305 Identities=11% Similarity=0.014 Sum_probs=173.8
Q ss_pred hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
.+++++|+++.+ . -....| ...+++|++|++++|.+...++. ...+++|++|++++|.+.+. +...+..+++|
T Consensus 177 l~~L~~L~Ls~n--~-l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L 249 (768)
T 3rgz_A 177 CGELKHLAISGN--K-ISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD-FSRAISTCTEL 249 (768)
T ss_dssp CTTCCEEECCSS--E-EESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSC
T ss_pred CCCCCEEECCCC--c-ccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc-ccHHHhcCCCC
Confidence 356777777654 1 111122 25788899999999888665443 67789999999999988643 33447889999
Q ss_pred ceeEeeeecCcceEeecCCCCCcEEEEccCCCC----ceEEEecCCccEEEEcCC--CCCCceeccCCCCCcEEEEE---
Q 036097 215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREA----EEVNINALNGHSITVVSP--LPSGKINEVSCKNLKSLFLC--- 285 (481)
Q Consensus 215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~----~~~~~~~p~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~--- 285 (481)
++|++++|..........+++|+.|++++|... ..+...+++|+.|+++++ .+..+..+..+++|++|+++
T Consensus 250 ~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp CEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred CEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 999999885433332235688999999887511 111122488999999888 33456678888999999887
Q ss_pred echhhhHHhhhcCCcccEEEecccccccccccccccCC-cccEEEecCCCCcc---------------------------
Q 036097 286 ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSP-SLKRLEIFKCTKLA--------------------------- 337 (481)
Q Consensus 286 ~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~-~L~~L~l~~c~~l~--------------------------- 337 (481)
+.+......+..+++|+.|++++|.+...+.......+ +|+.|++++|..-.
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 44343444567788888888888432211111111112 45555555443111
Q ss_pred --cccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeecee-eech
Q 036097 338 --AVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESV-IVPK 414 (481)
Q Consensus 338 --~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~-~~~~ 414 (481)
.....+++|+.|.++++.+.......+. .+++|+.+++..+... +.++..+..+.+|+.|+++.+... ..|+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLE----GEIPQELMYVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCCCccc----CcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence 1112344555555554433222221111 4455555555433300 112233334444444666655432 3333
Q ss_pred hhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 415 ELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 415 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
. +..+++|+.|+++.+.-.+ .++..+..+|+|+.|.+
T Consensus 485 ~-----l~~l~~L~~L~L~~N~l~~------~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 485 G-----LSNCTNLNWISLSNNRLTG------EIPKWIGRLENLAILKL 521 (768)
T ss_dssp G-----GGGCTTCCEEECCSSCCCS------CCCGGGGGCTTCCEEEC
T ss_pred H-----HhcCCCCCEEEccCCccCC------cCChHHhcCCCCCEEEC
Confidence 3 3345667777776665321 23455666777777777
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.69 E-value=9.2e-18 Score=180.72 Aligned_cols=238 Identities=12% Similarity=0.057 Sum_probs=142.1
Q ss_pred CCeeEEEEEEeecCCcccccCC--cccCCCCccEEEEcCeeccCCCCCC-CcCCCcceEEEecceecChHHHH--HHhcC
Q 036097 136 STVKELELHTILRGDRLYHLPQ--MVVCSETVNVLDLFGCILLEFPGRN-SVKLPSLRKLRLAQVRASDQVIE--NLVAG 210 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~--~l~~~ 210 (481)
+++++|+|+.+ .-...+|. .+..+++|++|+|++|.+....+.. ...+++|++|+++++.+.+.... ..+..
T Consensus 100 ~~L~~L~Ls~n---~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 100 ASLTSLDLSRN---SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp TTCCEEECCSS---EEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred CCCCEEECCCC---cCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 57888887765 12234555 6677888888888888775433222 25778888888888877552222 23677
Q ss_pred CCccceeEeeeecCcceEeecCCCCCcEEEEccCCCCc--eEEEecCCccEEEEcCC--CCCCceeccCCCCCcEEEEE-
Q 036097 211 CPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAE--EVNINALNGHSITVVSP--LPSGKINEVSCKNLKSLFLC- 285 (481)
Q Consensus 211 ~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~--~~~~~~p~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~- 285 (481)
+++|++|++++|..........+++|+.|++++|.... .....+++|++|+++++ .+..+..+..+++|+.|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 88888888887753333344567888888888876211 11335678888888887 33445567788888888876
Q ss_pred --echhhhHHhhhcCCcccEEEeccccccccccc-ccccCCcccEEEecCCCCc---ccccccCCCcceeEecccccCCc
Q 036097 286 --ITSVVDETLSYHITRLVVLECLGLIVCFELQN-IKISSPSLKRLEIFKCTKL---AAVEIETPNLSKCKYNGGVVPFS 359 (481)
Q Consensus 286 --~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~-l~~~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~~ 359 (481)
+.+.. .. ..+++|+.|++++|.....+.. +...+++|++|++++|.-- .......++|++|.++++.+...
T Consensus 257 n~l~~~~-~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 257 NQFVGPI-PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp SCCEESC-CC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CcccCcc-Cc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc
Confidence 22211 11 1667777777777432222221 1122467777777775421 12233456777777776554321
Q ss_pred chhhhhccCCCccEEEEeeC
Q 036097 360 SSTALKLLETDLNLYTINFD 379 (481)
Q Consensus 360 ~~~~l~~~~~~L~~l~l~~~ 379 (481)
........+++|+.+++..+
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSS
T ss_pred CCHHHHhcCCCCCEEeCcCC
Confidence 11111125667777776544
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.69 E-value=6.4e-17 Score=157.53 Aligned_cols=291 Identities=12% Similarity=0.072 Sum_probs=190.4
Q ss_pred hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
.+++++|++..+ ....++. +..+++|++|++++|.+.+.+. ...+++|++|+++++.+.+- . .+..+++|
T Consensus 43 l~~L~~L~l~~~----~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L 112 (347)
T 4fmz_A 43 LESITKLVVAGE----KVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--S-ALQNLTNL 112 (347)
T ss_dssp HTTCSEEECCSS----CCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G-GGTTCTTC
T ss_pred cccccEEEEeCC----ccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--h-HHcCCCcC
Confidence 468888888775 2334443 5678899999999998866653 66788999999998877652 1 26788999
Q ss_pred ceeEeeeecCcceEeecCCCCCcEEEEccCCCCceE--EEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echh
Q 036097 215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEV--NINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSV 289 (481)
Q Consensus 215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~ 289 (481)
++|++++|.--....+..+++|+.|++++|.....+ ...+++|+.|+++++.......+..+++|+.|+++ +.+
T Consensus 113 ~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 191 (347)
T 4fmz_A 113 RELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED- 191 (347)
T ss_dssp SEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC-
T ss_pred CEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc-
Confidence 999998875222112556788999999888522221 23567889999888843333337888889998876 222
Q ss_pred hhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc--cccCCCcceeEecccccCCcchhhhhcc
Q 036097 290 VDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV--EIETPNLSKCKYNGGVVPFSSSTALKLL 367 (481)
Q Consensus 290 ~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~--~~~~p~L~~L~~~~~~~~~~~~~~l~~~ 367 (481)
+.. +..+++|+.|+++++.... +.. ...+++|++|++++|. +..+ ....++|++|.++++.+.... .+ ..
T Consensus 192 -~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~--~~-~~ 263 (347)
T 4fmz_A 192 -ISP-LASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDIN--AV-KD 263 (347)
T ss_dssp -CGG-GGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG--GG-TT
T ss_pred -ccc-ccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCCCh--hH-hc
Confidence 112 6778889999988832211 111 3346789999998875 3322 345688999988887665431 12 37
Q ss_pred CCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHH
Q 036097 368 ETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVV 447 (481)
Q Consensus 368 ~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l 447 (481)
+++|+.+++..+.-.. + ..+..+.+|+.|+++++.....+... +..+++|++|+++.+.-.. ..
T Consensus 264 l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~------~~ 327 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISD-----I-SVLNNLSQLNSLFLNNNQLGNEDMEV----IGGLTNLTTLFLSQNHITD------IR 327 (347)
T ss_dssp CTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEECCSSCCCGGGHHH----HHTCTTCSEEECCSSSCCC------CG
T ss_pred CCCcCEEEccCCccCC-----C-hhhcCCCCCCEEECcCCcCCCcChhH----hhccccCCEEEccCCcccc------cc
Confidence 7888888886654110 1 23344444455888876544333221 3446789999998876322 11
Q ss_pred hhhhhcCcccceEEE
Q 036097 448 DGLLWMSPHVDTVTI 462 (481)
Q Consensus 448 ~~ll~~~p~L~~L~l 462 (481)
+ +..+|+|+.|++
T Consensus 328 ~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 328 P--LASLSKMDSADF 340 (347)
T ss_dssp G--GGGCTTCSEESS
T ss_pred C--hhhhhccceeeh
Confidence 2 667899998887
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.69 E-value=2.1e-17 Score=174.03 Aligned_cols=281 Identities=10% Similarity=0.065 Sum_probs=168.1
Q ss_pred hCCeeEEEEEEeecCCcccc------------------cCCccc--CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEe
Q 036097 135 ESTVKELELHTILRGDRLYH------------------LPQMVV--CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRL 194 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~------------------l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L 194 (481)
.+++++|+++.+ . ... +|..+. ++++|++|+|++|.+....+.....+++|++|++
T Consensus 205 l~~L~~L~Ls~n--~--l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 205 LTKLRQFYMGNS--P--FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp CTTCCEEEEESC--C--CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred ccCCCEEECcCC--c--cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 468999999987 2 233 999998 9999999999999876655556778999999999
Q ss_pred ccee-cChHHHHHHhc------CCCccceeEeeeecCcceE----eecCCCCCcEEEEccCCCCce--EEEecCCccEEE
Q 036097 195 AQVR-ASDQVIENLVA------GCPLIEDLIFEFCEGLKSI----KLFGRSKLRDIKIKGGREAEE--VNINALNGHSIT 261 (481)
Q Consensus 195 ~~~~-~~~~~l~~l~~------~~p~Le~L~l~~~~~~~~l----~i~~~~~L~~L~l~~~~~~~~--~~~~~p~L~~L~ 261 (481)
++|. ++...+..-+. .+++|++|++++|.-- .+ .+..+++|+.|+++++..... ....+++|+.|+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~ 359 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEE
Confidence 9998 76523333233 4599999999988532 33 355678999999998862211 223567888888
Q ss_pred EcCC-CCCCceeccCCCC-CcEEEEE---echhhhHHhhhc--CCcccEEEeccccccccccc-cc------ccCCcccE
Q 036097 262 VVSP-LPSGKINEVSCKN-LKSLFLC---ITSVVDETLSYH--ITRLVVLECLGLIVCFELQN-IK------ISSPSLKR 327 (481)
Q Consensus 262 l~~~-~~~~~~~~~~~~~-L~~L~l~---~~~~~~~~~~~~--~~~L~~L~L~~~~~c~~l~~-l~------~~~~~L~~ 327 (481)
++++ ....+..+..+++ |+.|+++ ++ .++..+.. +++|+.|++++|.+...... +. ...++|+.
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 8887 2344445777888 8888877 33 23333333 34778888777443221111 11 12346777
Q ss_pred EEecCCCCccccc----ccCCCcceeEecccccCCcchhhhh------ccCCCccEEEEeeChhhHHHHHHHHhhcc--c
Q 036097 328 LEIFKCTKLAAVE----IETPNLSKCKYNGGVVPFSSSTALK------LLETDLNLYTINFDPQWYVKFIELIAKFH--Q 395 (481)
Q Consensus 328 L~l~~c~~l~~~~----~~~p~L~~L~~~~~~~~~~~~~~l~------~~~~~L~~l~l~~~~~~~~~~~~~~~~l~--~ 395 (481)
|++++|. +..++ ...++|+.|.++++.+.......+. .++++|+.+++..+.- ..++..+. .
T Consensus 438 L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-----~~lp~~~~~~~ 511 (636)
T 4eco_A 438 INLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-----TKLSDDFRATT 511 (636)
T ss_dssp EECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC-----CBCCGGGSTTT
T ss_pred EECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC-----CccChhhhhcc
Confidence 7777654 22322 2356666666666554422111010 0112566666644431 11222332 3
Q ss_pred ceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEE
Q 036097 396 WSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFS 433 (481)
Q Consensus 396 L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 433 (481)
+.+|+.|+++.+....+|+. +..+++|+.|+++
T Consensus 512 l~~L~~L~Ls~N~l~~ip~~-----~~~l~~L~~L~Ls 544 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSKFPTQ-----PLNSSTLKGFGIR 544 (636)
T ss_dssp CTTCCEEECCSSCCSSCCCG-----GGGCSSCCEEECC
T ss_pred CCCcCEEECCCCCCCCcChh-----hhcCCCCCEEECC
Confidence 34444466665554444433 2334556666664
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=4.5e-17 Score=165.74 Aligned_cols=232 Identities=16% Similarity=0.056 Sum_probs=100.4
Q ss_pred CCeeEEEEEEeecCCccccc-CCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHL-PQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
.+++.|+++.+ ....+ +..+..+++|++|+|++|.+....+.....+++|++|+|+++.+..- ....+..+++|
T Consensus 32 ~~l~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKN----RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCSS----CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTC
T ss_pred CCCcEEECCCC----ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCC
Confidence 34555555543 12222 23344556666666666655444333444556666666665554321 11123455566
Q ss_pred ceeEeeeecCcce--EeecCCCCCcEEEEccCCCCc---eEEEecCCccEEEEcCCC-CC-CceeccCCCCCcEEEEE--
Q 036097 215 EDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREAE---EVNINALNGHSITVVSPL-PS-GKINEVSCKNLKSLFLC-- 285 (481)
Q Consensus 215 e~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~~---~~~~~~p~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~l~-- 285 (481)
++|++++|.-... ..+..+++|+.|+++++.... .....+++|+.|+++++. .. ....+..+++|+.|++.
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 6666655532111 122334555566555543110 011134555555555551 11 12234555555555554
Q ss_pred -echhhhHHhhhcCCcccEEEeccccccccccccc---ccCCcccEEEecCCCCccccc----ccCCCcceeEecccccC
Q 036097 286 -ITSVVDETLSYHITRLVVLECLGLIVCFELQNIK---ISSPSLKRLEIFKCTKLAAVE----IETPNLSKCKYNGGVVP 357 (481)
Q Consensus 286 -~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~---~~~~~L~~L~l~~c~~l~~~~----~~~p~L~~L~~~~~~~~ 357 (481)
+.. .....+..+++|+.|++++ |..+..+. ....+|+.|++++|. +..+. ..+++|+.|.++++.+.
T Consensus 187 ~i~~-~~~~~~~~l~~L~~L~l~~---~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 187 NINA-IRDYSFKRLYRLKVLEISH---WPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp CCCE-ECTTCSCSCTTCCEEEEEC---CTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred cCcE-eChhhcccCcccceeeCCC---CccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCC
Confidence 111 1112234455555555555 33322221 112355555555543 22221 23455555555554433
Q ss_pred CcchhhhhccCCCccEEEEee
Q 036097 358 FSSSTALKLLETDLNLYTINF 378 (481)
Q Consensus 358 ~~~~~~l~~~~~~L~~l~l~~ 378 (481)
......+ ..+++|+.+++..
T Consensus 262 ~~~~~~~-~~l~~L~~L~L~~ 281 (477)
T 2id5_A 262 TIEGSML-HELLRLQEIQLVG 281 (477)
T ss_dssp EECTTSC-TTCTTCCEEECCS
T ss_pred ccChhhc-cccccCCEEECCC
Confidence 2221111 1445555555533
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=3.7e-17 Score=175.96 Aligned_cols=311 Identities=11% Similarity=0.034 Sum_probs=194.9
Q ss_pred hCCeeEEEEEEeecCCccc----------------ccCCccc--CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecc
Q 036097 135 ESTVKELELHTILRGDRLY----------------HLPQMVV--CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQ 196 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~ 196 (481)
.++++.|+|+.+ ..... .+|..+. .+++|++|+|++|.+....+.....+++|+.|+|++
T Consensus 447 L~~L~~L~Ls~N--~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 447 LTKLQIIYFANS--PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp CTTCCEEEEESC--CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred CCCCCEEECcCC--cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 478999999987 32221 2898887 899999999999987655545677899999999999
Q ss_pred ee-cChHHHHH----H---hcCCCccceeEeeeecCcceE----eecCCCCCcEEEEccCCC--CceEEEecCCccEEEE
Q 036097 197 VR-ASDQVIEN----L---VAGCPLIEDLIFEFCEGLKSI----KLFGRSKLRDIKIKGGRE--AEEVNINALNGHSITV 262 (481)
Q Consensus 197 ~~-~~~~~l~~----l---~~~~p~Le~L~l~~~~~~~~l----~i~~~~~L~~L~l~~~~~--~~~~~~~~p~L~~L~l 262 (481)
|. ++...++. + +..+|+|++|++++|..- .+ .+..+++|+.|+++++.. +. ....+++|+.|++
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEEC
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEEC
Confidence 97 76412222 1 245679999999998533 33 245679999999999872 22 2235688999999
Q ss_pred cCC-CCCCceeccCCCC-CcEEEEE---echhhhHHhhhcC--CcccEEEeccccccccccccc-----ccCCcccEEEe
Q 036097 263 VSP-LPSGKINEVSCKN-LKSLFLC---ITSVVDETLSYHI--TRLVVLECLGLIVCFELQNIK-----ISSPSLKRLEI 330 (481)
Q Consensus 263 ~~~-~~~~~~~~~~~~~-L~~L~l~---~~~~~~~~~~~~~--~~L~~L~L~~~~~c~~l~~l~-----~~~~~L~~L~l 330 (481)
+++ ....+..+..+++ |+.|+++ ++ .++..+... ++|+.|++++|.+...+..+. ...++|+.|++
T Consensus 603 s~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred cCCccccchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 988 3345556888888 9999987 33 333444444 348999998865443333222 12347888888
Q ss_pred cCCCCccccc----ccCCCcceeEecccccCCcchhhhh------ccCCCccEEEEeeChhhHHHHHHHHhhcc--ccee
Q 036097 331 FKCTKLAAVE----IETPNLSKCKYNGGVVPFSSSTALK------LLETDLNLYTINFDPQWYVKFIELIAKFH--QWSK 398 (481)
Q Consensus 331 ~~c~~l~~~~----~~~p~L~~L~~~~~~~~~~~~~~l~------~~~~~L~~l~l~~~~~~~~~~~~~~~~l~--~L~~ 398 (481)
++|. +..++ ..+++|+.|.++++.+.......+. .++++|+.|++..+.- ..++..+. .+.+
T Consensus 681 s~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-----~~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 681 SYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-----TSLSDDFRATTLPY 754 (876)
T ss_dssp CSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC-----CCCCGGGSTTTCTT
T ss_pred cCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCC-----ccchHHhhhccCCC
Confidence 8764 33322 2467788888877655422211110 1233777777765541 12333333 4444
Q ss_pred eEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 399 VLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 399 l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
|+.|++++|....+|.. +..+++|+.|+|+.+.......+...++..+.++|+|+.|.+
T Consensus 755 L~~L~Ls~N~L~~lp~~-----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 755 LSNMDVSYNCFSSFPTQ-----PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CCEEECCSSCCSSCCCG-----GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred cCEEEeCCCCCCccchh-----hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 55577776655555544 334667777777653200000002223445566777777777
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=2.1e-17 Score=172.75 Aligned_cols=334 Identities=11% Similarity=0.034 Sum_probs=213.2
Q ss_pred eeEEEEEEEeeCChhhHHHHHHH-HHhCCeeEEEEEEeecCCcccc---cCCcccCCCCccEEEEcCeeccCCCCC----
Q 036097 110 VEKLRFKASFLDDSELADRCVCY-AIESTVKELELHTILRGDRLYH---LPQMVVCSETVNVLDLFGCILLEFPGR---- 181 (481)
Q Consensus 110 l~~l~l~~~~~~~~~~~~~~~~~-~~~~~l~~L~L~~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~---- 181 (481)
++.+.+...... ....+... ...+++++|+|..+ ...... ++.....+++|++|+++++.+......
T Consensus 140 L~~L~L~~~~~~---~~~~l~~~~~~~~~L~~L~L~~~--~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~ 214 (592)
T 3ogk_B 140 LETLKLDKCSGF---TTDGLLSIVTHCRKIKTLLMEES--SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET 214 (592)
T ss_dssp CCEEEEESCEEE---EHHHHHHHHHHCTTCSEEECTTC--EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH
T ss_pred CcEEECcCCCCc---CHHHHHHHHhhCCCCCEEECccc--cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH
Confidence 888888754211 11222222 24489999999876 111111 333445789999999999887422211
Q ss_pred CCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeec----------------CcceEee------------cCC
Q 036097 182 NSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE----------------GLKSIKL------------FGR 233 (481)
Q Consensus 182 ~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~----------------~~~~l~i------------~~~ 233 (481)
....+++|++|++.++.+.+ +...+..+++|++|.++.+. .++.+.+ ..+
T Consensus 215 ~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~ 292 (592)
T 3ogk_B 215 IARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292 (592)
T ss_dssp HHHHCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred HHhhCCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence 22468999999999987743 44667788999999997431 1111211 235
Q ss_pred CCCcEEEEccCCC-Cc---eEEEecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE--------------echhhhHH
Q 036097 234 SKLRDIKIKGGRE-AE---EVNINALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC--------------ITSVVDET 293 (481)
Q Consensus 234 ~~L~~L~l~~~~~-~~---~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~--------------~~~~~~~~ 293 (481)
++|++|++++|.. .. .+...+++|+.|++.++. .........|++|++|++. +++..+..
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 7999999999871 11 122468999999998552 2233445789999999987 33445666
Q ss_pred hhhcCCcccEEEecccccc-cccccccccCCcccEEEecC---CCCccc---------ccccCCCcceeEeccc--ccCC
Q 036097 294 LSYHITRLVVLECLGLIVC-FELQNIKISSPSLKRLEIFK---CTKLAA---------VEIETPNLSKCKYNGG--VVPF 358 (481)
Q Consensus 294 ~~~~~~~L~~L~L~~~~~c-~~l~~l~~~~~~L~~L~l~~---c~~l~~---------~~~~~p~L~~L~~~~~--~~~~ 358 (481)
+...+++|+.|++..+.+. ..+..+...+++|++|+++. |+.+.+ +...+++|++|.++.+ .+..
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 7788999999999442211 11223344588999999984 455554 2456899999999542 3454
Q ss_pred cchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeecee-eechhhhccCCCCCCCCceEEEEeccc
Q 036097 359 SSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESV-IVPKELRQILPPPLSGVKHLNFSISIP 437 (481)
Q Consensus 359 ~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~ 437 (481)
.....+...+++|+.+++..+.--...+..+...+++|+. |+++++... .....+ ...+++|++|+++.+.
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~---L~l~~n~l~~~~~~~~----~~~l~~L~~L~ls~n~- 524 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK---LEMRGCCFSERAIAAA----VTKLPSLRYLWVQGYR- 524 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCE---EEEESCCCBHHHHHHH----HHHCSSCCEEEEESCB-
T ss_pred HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCe---eeccCCCCcHHHHHHH----HHhcCccCeeECcCCc-
Confidence 4444555578999999998765222234445556665555 999977522 111111 2236789999999987
Q ss_pred chhhhHHHHHhhhhhcCcccceEEE
Q 036097 438 FKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 438 ~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
.++ ..+..+...+|.+....+
T Consensus 525 it~----~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 525 ASM----TGQDLMQMARPYWNIELI 545 (592)
T ss_dssp CCT----TCTTGGGGCCTTEEEEEE
T ss_pred CCH----HHHHHHHHhCCCcEEEEe
Confidence 332 234455667898877666
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=1.7e-16 Score=166.52 Aligned_cols=56 Identities=16% Similarity=-0.026 Sum_probs=26.3
Q ss_pred ecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echh-hhHHhhhcCCcccEEEecc
Q 036097 253 NALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSV-VDETLSYHITRLVVLECLG 308 (481)
Q Consensus 253 ~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~-~~~~~~~~~~~L~~L~L~~ 308 (481)
.+++|+.|+++++.......+..+++|+.|+++ ++.. .....+..+++|+.|++++
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 344455555554422222244455666666655 2211 1123345556666666665
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=5.9e-16 Score=156.98 Aligned_cols=268 Identities=15% Similarity=0.096 Sum_probs=149.5
Q ss_pred ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcE
Q 036097 159 VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRD 238 (481)
Q Consensus 159 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~ 238 (481)
+..+++|++|++++|.+...++ ...+++|++|+++++.+.+-. .+..+++|++|++.++. .....+..+++|+.
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFGNQV-TDLKPLANLTTLER 181 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEEESC-CCCGGGTTCTTCCE
T ss_pred hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh---hhccCCcccEeecCCcc-cCchhhccCCCCCE
Confidence 3445555555555554443321 334555555555555443311 13445555555554221 01112344566777
Q ss_pred EEEccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccccc
Q 036097 239 IKIKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCF 313 (481)
Q Consensus 239 L~l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~ 313 (481)
|++++|. .+.. ...+++|++|+++++.-.....+..+++|+.|+++ +.+ + ..+..+++|+.|+++++.+..
T Consensus 182 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 182 LDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--I-GTLASLTNLTDLDLANNQISN 257 (466)
T ss_dssp EECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCC
T ss_pred EECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc--c-hhhhcCCCCCEEECCCCcccc
Confidence 7776665 1111 12456777777777632222236667777777766 222 1 234667788888887733211
Q ss_pred ccccccccCCcccEEEecCCCCcccc--cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHh
Q 036097 314 ELQNIKISSPSLKRLEIFKCTKLAAV--EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIA 391 (481)
Q Consensus 314 ~l~~l~~~~~~L~~L~l~~c~~l~~~--~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~ 391 (481)
+.. ...+++|+.|++++|. +..+ ....++|+.|.++++.+..... + ..+++|+.+++..+.-.. . .
T Consensus 258 -~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~-~~l~~L~~L~L~~n~l~~-----~-~ 325 (466)
T 1o6v_A 258 -LAP-LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQLEDISP--I-SNLKNLTYLTLYFNNISD-----I-S 325 (466)
T ss_dssp -CGG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCGG--G-GGCTTCSEEECCSSCCSC-----C-G
T ss_pred -chh-hhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCcccCchh--h-cCCCCCCEEECcCCcCCC-----c-h
Confidence 111 2345788888888764 2221 3356788888888876654322 2 378889988887664110 1 0
Q ss_pred hcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 392 KFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 392 ~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
.+..+.+|+.|+++++....++ . +..+++|+.|+++.+.-.+ ..+ +..+|+|+.|.+
T Consensus 326 ~~~~l~~L~~L~l~~n~l~~~~-~-----l~~l~~L~~L~l~~n~l~~------~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 326 PVSSLTKLQRLFFYNNKVSDVS-S-----LANLTNINWLSAGHNQISD------LTP--LANLTRITQLGL 382 (466)
T ss_dssp GGGGCTTCCEEECCSSCCCCCG-G-----GTTCTTCCEEECCSSCCCB------CGG--GTTCTTCCEEEC
T ss_pred hhccCccCCEeECCCCccCCch-h-----hccCCCCCEEeCCCCccCc------cch--hhcCCCCCEEec
Confidence 1334444445888877554443 2 4567889999998776322 123 678999999998
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=1e-16 Score=162.00 Aligned_cols=308 Identities=12% Similarity=0.048 Sum_probs=157.4
Q ss_pred CCeeEEEEEEeecCCccccc-CCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHH-HHhcCCCc
Q 036097 136 STVKELELHTILRGDRLYHL-PQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIE-NLVAGCPL 213 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~-~l~~~~p~ 213 (481)
+++++|+++.+ .. ...+ +..+..+++|++|+|++|.+...++.....+++|++|++++|.+.+..+. ..+..+++
T Consensus 54 ~~L~~L~L~~n--~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 130 (455)
T 3v47_A 54 QDLQFLKVEQQ--TP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130 (455)
T ss_dssp TTCCEEECCCC--ST-TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT
T ss_pred ccccEEECcCC--cc-cceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc
Confidence 45666666554 11 1122 33344566666666666666554444455566666666666666432222 22455666
Q ss_pred cceeEeeeecCcceE--e-ecCCCCCcEEEEccCCCCc----eE-EEecCCccEEEEcCCC-CCC-c--------eeccC
Q 036097 214 IEDLIFEFCEGLKSI--K-LFGRSKLRDIKIKGGREAE----EV-NINALNGHSITVVSPL-PSG-K--------INEVS 275 (481)
Q Consensus 214 Le~L~l~~~~~~~~l--~-i~~~~~L~~L~l~~~~~~~----~~-~~~~p~L~~L~l~~~~-~~~-~--------~~~~~ 275 (481)
|++|++++|.-.... . +..+++|+.|+++++.... .+ ....++|+.++++++. ... . ..+..
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 210 (455)
T 3v47_A 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210 (455)
T ss_dssp CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT
T ss_pred CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccc
Confidence 777766666321111 1 3445666666666664110 00 0112456666666551 110 0 11234
Q ss_pred CCCCcEEEEE---echhhhHHhhh--cCCcccEEEeccccccc------cccc------ccccCCcccEEEecCCCCcc-
Q 036097 276 CKNLKSLFLC---ITSVVDETLSY--HITRLVVLECLGLIVCF------ELQN------IKISSPSLKRLEIFKCTKLA- 337 (481)
Q Consensus 276 ~~~L~~L~l~---~~~~~~~~~~~--~~~~L~~L~L~~~~~c~------~l~~------l~~~~~~L~~L~l~~c~~l~- 337 (481)
+++|+.|+++ +++.....+.. ..++|+.|+++++.... .+.. .....++|+.|++++|.-..
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence 5677777766 33322222221 23667777776621100 0000 01113577888887764221
Q ss_pred --cccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHH-HhhcccceeeEEEEEEeeceeeech
Q 036097 338 --AVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIEL-IAKFHQWSKVLNLLSECGESVIVPK 414 (481)
Q Consensus 338 --~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~-~~~l~~L~~l~~L~i~~~~~~~~~~ 414 (481)
......++|+.|.++++.+.......+. .+++|+.+++..+.- ..+ +..+.++.+|+.|+++.+....+++
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFL-----GSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCC-----CEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCcc-----CCcChhHhcCcccCCEEECCCCcccccCh
Confidence 1233457788888877666543332222 677788887765531 111 2334444555558887665544421
Q ss_pred hhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 415 ELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 415 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
..+..+++|++|+++.+.-.. ..+..+..+|+|+.|.+
T Consensus 365 ----~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 365 ----QSFLGLPNLKELALDTNQLKS------VPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp ----TTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEEC
T ss_pred ----hhccccccccEEECCCCcccc------CCHhHhccCCcccEEEc
Confidence 124556778888887764221 12345567788888887
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.64 E-value=9.2e-16 Score=149.29 Aligned_cols=274 Identities=13% Similarity=0.028 Sum_probs=196.2
Q ss_pred cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-eecCCCCCcE
Q 036097 160 VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-KLFGRSKLRD 238 (481)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-~i~~~~~L~~ 238 (481)
..+++|++|+++++.+...+ ....+++|++|+++++.+.+-.. +..+++|++|++++|. +..+ .+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNK-ITDISALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCc-ccCchHHcCCCcCCE
Confidence 35789999999999987665 36679999999999998865221 7889999999999984 3332 3566899999
Q ss_pred EEEccCC--CCceEEEecCCccEEEEcCC-CCCCceeccCCCCCcEEEEE-echhhhHHhhhcCCcccEEEecccccccc
Q 036097 239 IKIKGGR--EAEEVNINALNGHSITVVSP-LPSGKINEVSCKNLKSLFLC-ITSVVDETLSYHITRLVVLECLGLIVCFE 314 (481)
Q Consensus 239 L~l~~~~--~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~L~~L~L~~~~~c~~ 314 (481)
|+++++. .... ...+++|+.|+++++ .......+..+++|++|++. .....+.. +..+++|+.|+++++... .
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~-~ 191 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE-D 191 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC-C
T ss_pred EECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc-c
Confidence 9999987 2222 346789999999998 33444458999999999987 11111111 678999999999994321 1
Q ss_pred cccccccCCcccEEEecCCCCcccc--cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhh
Q 036097 315 LQNIKISSPSLKRLEIFKCTKLAAV--EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAK 392 (481)
Q Consensus 315 l~~l~~~~~~L~~L~l~~c~~l~~~--~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 392 (481)
+.. ...+++|+.|++++|. +..+ ....++|++|.++++.+..... ...+++|+.+++..+.-.. + ..
T Consensus 192 ~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~-----~-~~ 260 (347)
T 4fmz_A 192 ISP-LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISD-----I-NA 260 (347)
T ss_dssp CGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-----C-GG
T ss_pred ccc-ccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCC-----C-hh
Confidence 111 3446899999999875 3332 3467899999999987764432 2488999999997764111 1 33
Q ss_pred cccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE-eec
Q 036097 393 FHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI-EYG 465 (481)
Q Consensus 393 l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l-~~~ 465 (481)
+..+.+|+.|+++++....++ . +..+++|+.|+++.+.-.. ..+..+..+|+|+.|.+ ++.
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~-~-----~~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDIS-V-----LNNLSQLNSLFLNNNQLGN------EDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-G-----GGGCTTCSEEECCSSCCCG------GGHHHHHTCTTCSEEECCSSS
T ss_pred HhcCCCcCEEEccCCccCCCh-h-----hcCCCCCCEEECcCCcCCC------cChhHhhccccCCEEEccCCc
Confidence 455555556999977655554 2 4457899999999886422 23455678999999999 554
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.63 E-value=1.4e-16 Score=167.08 Aligned_cols=156 Identities=12% Similarity=0.008 Sum_probs=72.9
Q ss_pred hhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcc---cccccCCCcceeEecccccCCcchhhhhccCCCc
Q 036097 295 SYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLA---AVEIETPNLSKCKYNGGVVPFSSSTALKLLETDL 371 (481)
Q Consensus 295 ~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~---~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L 371 (481)
+..+++|+.|+++++.+. .+......+++|+.|++++|.--. ......++|++|.++++.+...........+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 344555666666653211 111111224566666666654111 1223456666666666543311111101256667
Q ss_pred cEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhh
Q 036097 372 NLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLL 451 (481)
Q Consensus 372 ~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll 451 (481)
+.+++..+.-.. ....+..+.++.+|+.|+++.+.....+. ..+..+++|++|+++.+.-... ..+..+
T Consensus 353 ~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~ 421 (606)
T 3t6q_A 353 RELDLSHDDIET--SDCCNLQLRNLSHLQSLNLSYNEPLSLKT----EAFKECPQLELLDLAFTRLKVK-----DAQSPF 421 (606)
T ss_dssp CEEECCSSCCCE--EEESTTTTTTCTTCCEEECCSCSCEEECT----TTTTTCTTCSEEECTTCCEECC-----TTCCTT
T ss_pred CEEECCCCcccc--ccCcchhcccCCCCCEEECCCCcCCcCCH----HHhcCCccCCeEECCCCcCCCc-----ccchhh
Confidence 777665443100 00001233444444457776554433321 1244566777777766542111 112345
Q ss_pred hcCcccceEEE
Q 036097 452 WMSPHVDTVTI 462 (481)
Q Consensus 452 ~~~p~L~~L~l 462 (481)
..+++|+.|.+
T Consensus 422 ~~l~~L~~L~l 432 (606)
T 3t6q_A 422 QNLHLLKVLNL 432 (606)
T ss_dssp TTCTTCCEEEC
T ss_pred hCcccCCEEEC
Confidence 67788888888
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.63 E-value=1.4e-15 Score=154.11 Aligned_cols=289 Identities=13% Similarity=0.054 Sum_probs=164.1
Q ss_pred hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
.+++++|+++.+ ....++. +..+++|++|++++|.+...++ ...+++|++|+++++.+.+-.. +..+++|
T Consensus 67 l~~L~~L~Ls~n----~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L 136 (466)
T 1o6v_A 67 LNNLTQINFSNN----QLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP---LKNLTNL 136 (466)
T ss_dssp CTTCCEEECCSS----CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTC
T ss_pred hcCCCEEECCCC----ccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH---HcCCCCC
Confidence 467777777765 2333443 5667778888887777755543 5567777888877776654211 5677778
Q ss_pred ceeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhh
Q 036097 215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVD 291 (481)
Q Consensus 215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~ 291 (481)
++|++++|.-.....+..+++|+.|.+.++.........+++|+.|+++++.-.....+..+++|+.|+++ +.+..
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~- 215 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT- 215 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG-
T ss_pred CEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccc-
Confidence 88877777421111345567777777764431111123457777777777732223346777777777776 22211
Q ss_pred HHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc--cccCCCcceeEecccccCCcchhhhhccCC
Q 036097 292 ETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV--EIETPNLSKCKYNGGVVPFSSSTALKLLET 369 (481)
Q Consensus 292 ~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~--~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~ 369 (481)
. +..+++|+.|+++++.+.. +. ....+++|+.|++++|. +..+ ...+++|+.|.++++.+..... + ..++
T Consensus 216 -~-~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~-~~l~ 287 (466)
T 1o6v_A 216 -P-LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQISNISP--L-AGLT 287 (466)
T ss_dssp -G-GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGG--G-TTCT
T ss_pred -c-ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCCccCcccc--c-cCCC
Confidence 1 4567777777777732211 11 12235677777777764 2221 2345777777777765543322 1 3667
Q ss_pred CccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhh
Q 036097 370 DLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDG 449 (481)
Q Consensus 370 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 449 (481)
+|+.+++..+.-. .+ ..+..+.+|+.|+++.+.....+. +..+++|+.|+++.+.-.. ++
T Consensus 288 ~L~~L~L~~n~l~-----~~-~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~-------~~- 347 (466)
T 1o6v_A 288 ALTNLELNENQLE-----DI-SPISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSD-------VS- 347 (466)
T ss_dssp TCSEEECCSSCCS-----CC-GGGGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCC-------CG-
T ss_pred ccCeEEcCCCccc-----Cc-hhhcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCC-------ch-
Confidence 7777777554411 00 012333333447777664443332 2345677777777664222 11
Q ss_pred hhhcCcccceEEE
Q 036097 450 LLWMSPHVDTVTI 462 (481)
Q Consensus 450 ll~~~p~L~~L~l 462 (481)
-+..+++|+.|.+
T Consensus 348 ~l~~l~~L~~L~l 360 (466)
T 1o6v_A 348 SLANLTNINWLSA 360 (466)
T ss_dssp GGTTCTTCCEEEC
T ss_pred hhccCCCCCEEeC
Confidence 3556777777777
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=162.07 Aligned_cols=126 Identities=13% Similarity=0.018 Sum_probs=54.4
Q ss_pred cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---eecCCC
Q 036097 158 MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI---KLFGRS 234 (481)
Q Consensus 158 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---~i~~~~ 234 (481)
.+..+++|++|+|++|.+...+......+++|++|+|+++.+... ....+..+++|++|++++|. +..+ .+..++
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 152 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLN 152 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCT
T ss_pred hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCc-cceeChhhccCCC
Confidence 344455555555555555444433334455555555555544321 11123445555555555442 1111 223345
Q ss_pred CCcEEEEccCCCC---ceEEEecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE
Q 036097 235 KLRDIKIKGGREA---EEVNINALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC 285 (481)
Q Consensus 235 ~L~~L~l~~~~~~---~~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~ 285 (481)
+|+.|++++|..- ......+++|+.|+++++. ......+..+++|+.|+++
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 5555555554310 0011234455555555541 1122234455555555554
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.63 E-value=1.1e-16 Score=158.53 Aligned_cols=271 Identities=13% Similarity=0.079 Sum_probs=151.6
Q ss_pred CCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
+++++|++..+ ....++. .+..+++|++|+|++|.+...++.....+++|++|+++++.+.. ....++..+++|
T Consensus 69 ~~L~~L~L~~n----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L 143 (390)
T 3o6n_A 69 RQVELLNLNDL----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKL 143 (390)
T ss_dssp CCCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred ccCcEEECCCC----cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCC
Confidence 56666666554 2223332 44556677777777776655554445566677777777666542 111224556677
Q ss_pred ceeEeeeecCcceE---eecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---ech
Q 036097 215 EDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITS 288 (481)
Q Consensus 215 e~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~ 288 (481)
++|++++|.- ..+ .+..+++|+.|+++++..-..-....++|+.++++++.-. .+...++|+.|+++ ++.
T Consensus 144 ~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 144 TTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS---TLAIPIAVEELDASHNSINV 219 (390)
T ss_dssp CEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS---EEECCSSCSEEECCSSCCCE
T ss_pred cEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccc---ccCCCCcceEEECCCCeeee
Confidence 7777766632 111 2334566777777666411111123466666666665211 22344566777655 111
Q ss_pred hhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhh
Q 036097 289 VVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTAL 364 (481)
Q Consensus 289 ~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l 364 (481)
. .....++|+.|++++|.+... .....+++|++|+++++. +.. .....++|+.|.++++.+..... .
T Consensus 220 ~----~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~ 290 (390)
T 3o6n_A 220 V----RGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNL--Y 290 (390)
T ss_dssp E----ECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEEC--S
T ss_pred c----cccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCc--c
Confidence 1 012346788888888433211 223346789999998865 332 23356888999888876653221 0
Q ss_pred hccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097 365 KLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI 436 (481)
Q Consensus 365 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 436 (481)
...+++|+.+++..+.-. .++..+..+.+|+.|+++++....++ +..+++|+.|+++.+.
T Consensus 291 ~~~l~~L~~L~L~~n~l~-----~~~~~~~~l~~L~~L~L~~N~i~~~~-------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 291 GQPIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SSCCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSSC
T ss_pred cCCCCCCCEEECCCCcce-----ecCccccccCcCCEEECCCCccceeC-------chhhccCCEEEcCCCC
Confidence 126788888888666411 11222223333444888877555444 5567889999988775
No 19
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=8.1e-16 Score=160.78 Aligned_cols=150 Identities=14% Similarity=0.078 Sum_probs=100.9
Q ss_pred HhCCeeEEEEEEeecCCccccc-------------CCcccCCCCccEEEEcCeeccCCCCCCCc-CCCcceEEEecce-e
Q 036097 134 IESTVKELELHTILRGDRLYHL-------------PQMVVCSETVNVLDLFGCILLEFPGRNSV-KLPSLRKLRLAQV-R 198 (481)
Q Consensus 134 ~~~~l~~L~L~~~~~~~~~~~l-------------~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~L~~~-~ 198 (481)
..++++.|++..+. ......+ +.....+++|++|+|++|.+.+....... .+++|++|+|.+| .
T Consensus 64 ~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 64 RFPKVRSVELKGKP-HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HCTTCCEEEEECSC-GGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hCCCceEEeccCCC-chhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 34789999998862 1111111 11123688999999999876432111122 5899999999998 6
Q ss_pred cChHHHHHHhcCCCccceeEeeeecCcce-----E-e-ecCCCCCcEEEEccCC-CC-----ceEEEecCCccEEEEcCC
Q 036097 199 ASDQVIENLVAGCPLIEDLIFEFCEGLKS-----I-K-LFGRSKLRDIKIKGGR-EA-----EEVNINALNGHSITVVSP 265 (481)
Q Consensus 199 ~~~~~l~~l~~~~p~Le~L~l~~~~~~~~-----l-~-i~~~~~L~~L~l~~~~-~~-----~~~~~~~p~L~~L~l~~~ 265 (481)
+++..+..+...|++|++|++++|. +.. + . ...+++|+.|++++|. .. ..+...+|+|++|+++++
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 6667788888899999999999885 221 1 1 1246899999999885 11 122234799999999987
Q ss_pred CC--CCceeccCCCCCcEEEEE
Q 036097 266 LP--SGKINEVSCKNLKSLFLC 285 (481)
Q Consensus 266 ~~--~~~~~~~~~~~L~~L~l~ 285 (481)
.. ..+..+..+++|+.|++.
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECS
T ss_pred CcHHHHHHHHhcCCcceEcccc
Confidence 21 234456778888888754
No 20
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=2.8e-17 Score=166.45 Aligned_cols=343 Identities=15% Similarity=0.046 Sum_probs=167.8
Q ss_pred eeEEEEEEEeeCChhhHHHHHH-HHHhCCeeEEEEEEeecCCcc---cccCCcccCCCCccEEEEcCeeccCCCCC-CCc
Q 036097 110 VEKLRFKASFLDDSELADRCVC-YAIESTVKELELHTILRGDRL---YHLPQMVVCSETVNVLDLFGCILLEFPGR-NSV 184 (481)
Q Consensus 110 l~~l~l~~~~~~~~~~~~~~~~-~~~~~~l~~L~L~~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~ 184 (481)
++.+.+... .... ..|.. ....++++.|+++.+ .... ..++..+..+++|++|+|++|.+.+.... ...
T Consensus 5 l~~L~Ls~~-~l~~---~~~~~~~~~~~~L~~L~L~~~--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 5 IQSLDIQCE-ELSD---ARWAELLPLLQQCQVVRLDDC--GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEESC-CCCH---HHHHHHHHHHTTCSEEEEESS--CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ceehhhhhc-ccCc---hhHHHHHhhcCCccEEEccCC--CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 666666533 1111 22333 334578888888876 3222 24556666778888888888876431110 111
Q ss_pred CCC----cceEEEecceecCh---HHHHHHhcCCCccceeEeeeecCcce-----Ee---ecCCCCCcEEEEccCCCCc-
Q 036097 185 KLP----SLRKLRLAQVRASD---QVIENLVAGCPLIEDLIFEFCEGLKS-----IK---LFGRSKLRDIKIKGGREAE- 248 (481)
Q Consensus 185 ~~~----~L~~L~L~~~~~~~---~~l~~l~~~~p~Le~L~l~~~~~~~~-----l~---i~~~~~L~~L~l~~~~~~~- 248 (481)
.++ +|++|+|++|.+.+ ..+...+..+++|++|++++|. +.. +. ....++|++|++++|..-.
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 233 68888888888765 3455667788888888888775 221 10 1112567777777775111
Q ss_pred ------eEEEecCCccEEEEcCCCCC--Cceec-----cCCCCCcEEEEE---echhh---hHHhhhcCCcccEEEeccc
Q 036097 249 ------EVNINALNGHSITVVSPLPS--GKINE-----VSCKNLKSLFLC---ITSVV---DETLSYHITRLVVLECLGL 309 (481)
Q Consensus 249 ------~~~~~~p~L~~L~l~~~~~~--~~~~~-----~~~~~L~~L~l~---~~~~~---~~~~~~~~~~L~~L~L~~~ 309 (481)
.....+++|++|+++++.-. ....+ ...++|+.|+++ +++.. +...+..+++|++|++++|
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 11123467777777766211 01111 124567777665 33332 3444556677777777763
Q ss_pred cccc-ccc----cccccCCcccEEEecCCCCccc-----c---cccCCCcceeEecccccCCcchhh----hhccCCCcc
Q 036097 310 IVCF-ELQ----NIKISSPSLKRLEIFKCTKLAA-----V---EIETPNLSKCKYNGGVVPFSSSTA----LKLLETDLN 372 (481)
Q Consensus 310 ~~c~-~l~----~l~~~~~~L~~L~l~~c~~l~~-----~---~~~~p~L~~L~~~~~~~~~~~~~~----l~~~~~~L~ 372 (481)
.+.. ++. .+...+++|++|++++|. +.. + ...+++|++|.++++.+....... +....++|+
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 2111 111 111124566667766653 222 1 123566666666665544322211 112234666
Q ss_pred EEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeee-chhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhh
Q 036097 373 LYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIV-PKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLL 451 (481)
Q Consensus 373 ~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll 451 (481)
.+++..+.-.......+...+..++.|+.|+++.+..... +..+........++|++|+++.+.-.... ...++..+
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~--~~~l~~~l 394 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS--CSSLAATL 394 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH--HHHHHHHH
T ss_pred eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh--HHHHHHHH
Confidence 6666544311111122222232233333366664432211 11111110111345666666555422111 22334445
Q ss_pred hcCcccceEEE
Q 036097 452 WMSPHVDTVTI 462 (481)
Q Consensus 452 ~~~p~L~~L~l 462 (481)
..+|+|+.|++
T Consensus 395 ~~~~~L~~L~l 405 (461)
T 1z7x_W 395 LANHSLRELDL 405 (461)
T ss_dssp HHCCCCCEEEC
T ss_pred HhCCCccEEEC
Confidence 55666666666
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=7.6e-17 Score=169.73 Aligned_cols=287 Identities=11% Similarity=-0.008 Sum_probs=197.8
Q ss_pred ccCCcccCCCCccEEEEcCeeccC------------------CCCCCCc--CCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 154 HLPQMVVCSETVNVLDLFGCILLE------------------FPGRNSV--KLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 154 ~l~~~~~~~~~L~~L~L~~~~~~~------------------~~~~~~~--~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
.+|..+.++++|++|+|++|.+.. +| .... .+++|++|+|++|.+... +...+..+++
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~ 274 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPE 274 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSS
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCC
Confidence 488888899999999999999877 44 3555 899999999999976542 2234678999
Q ss_pred cceeEeeeecCcce--E--eecC------CCCCcEEEEccCCC--Cce--EEEecCCccEEEEcCCC--CCCceeccCCC
Q 036097 214 IEDLIFEFCEGLKS--I--KLFG------RSKLRDIKIKGGRE--AEE--VNINALNGHSITVVSPL--PSGKINEVSCK 277 (481)
Q Consensus 214 Le~L~l~~~~~~~~--l--~i~~------~~~L~~L~l~~~~~--~~~--~~~~~p~L~~L~l~~~~--~~~~~~~~~~~ 277 (481)
|++|++++|..+.. + .+.. +++|+.|++++|.. +.. ....+++|+.|+++++. +..+ .+..++
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 99999999863332 1 2222 48999999999872 222 22367899999999982 2455 788899
Q ss_pred CCcEEEEE---echhhhHHhhhcCCc-ccEEEeccccccccccccccc--CCcccEEEecCCCCcccccc----------
Q 036097 278 NLKSLFLC---ITSVVDETLSYHITR-LVVLECLGLIVCFELQNIKIS--SPSLKRLEIFKCTKLAAVEI---------- 341 (481)
Q Consensus 278 ~L~~L~l~---~~~~~~~~~~~~~~~-L~~L~L~~~~~c~~l~~l~~~--~~~L~~L~l~~c~~l~~~~~---------- 341 (481)
+|+.|+++ ++ .++..+..+++ |+.|++++|.+. .+...... .++|+.|++++|.--..++.
T Consensus 354 ~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 354 KLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 99999987 44 45555788888 999999995543 23222111 34899999999763222211
Q ss_pred cCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHh-h-------cccceeeEEEEEEeeceeeec
Q 036097 342 ETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIA-K-------FHQWSKVLNLLSECGESVIVP 413 (481)
Q Consensus 342 ~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~-~-------l~~L~~l~~L~i~~~~~~~~~ 413 (481)
..++|+.|.++++.+..... .+...+++|+.+++..+.-. .++. . +.++.+|+.|+++.+....+|
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~-~~~~~l~~L~~L~Ls~N~l~-----~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 504 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLT-----EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCT-HHHHTTCCCSEEECCSSCCS-----BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred cCCCCCEEECcCCccCcCCH-HHHccCCCCCEEECCCCCCC-----CcCHHHhccccccccccCCccEEECcCCcCCccC
Confidence 45689999999987764332 22236899999999665411 1211 1 222235666999988777777
Q ss_pred hhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 414 KELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 414 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
+.+. ...+++|++|+++.+.-.. ++.-+..+++|+.|.+
T Consensus 505 ~~~~---~~~l~~L~~L~Ls~N~l~~-------ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 505 DDFR---ATTLPYLVGIDLSYNSFSK-------FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp GGGS---TTTCTTCCEEECCSSCCSS-------CCCGGGGCSSCCEEEC
T ss_pred hhhh---hccCCCcCEEECCCCCCCC-------cChhhhcCCCCCEEEC
Confidence 5521 0267899999998875321 3444556777777777
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=1.2e-15 Score=160.04 Aligned_cols=284 Identities=15% Similarity=0.108 Sum_probs=161.9
Q ss_pred CeeEEEEEEeecCCcccccCCc-ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 137 TVKELELHTILRGDRLYHLPQM-VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 137 ~l~~L~L~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
+++.|++..+ ....++.. +..+++|++|++++|.+..+|. ....+++|++|+++++.+.+.. ...+..+++|+
T Consensus 255 ~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 328 (606)
T 3t6q_A 255 SVESINLQKH----YFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLC-QISASNFPSLT 328 (606)
T ss_dssp EEEEEECTTC----CCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCS
T ss_pred ceeEEEeecC----ccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCc-hhhhhccCcCC
Confidence 4555555443 22334433 4557788888888887765553 4556778888888887765421 12356678888
Q ss_pred eeEeeeecCcceE---eecCCCCCcEEEEccCCCCceE-----EEecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE
Q 036097 216 DLIFEFCEGLKSI---KLFGRSKLRDIKIKGGREAEEV-----NINALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC 285 (481)
Q Consensus 216 ~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~~~~~~-----~~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~ 285 (481)
+|++++|.....+ .+..+++|+.|+++++...... ...+++|+.|+++++. +..+..+..+++|+.|+++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 8888777432222 2445677888888777522111 1246777788777762 2233456677777777776
Q ss_pred ---echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcc------cccccCCCcceeEeccccc
Q 036097 286 ---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLA------AVEIETPNLSKCKYNGGVV 356 (481)
Q Consensus 286 ---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~------~~~~~~p~L~~L~~~~~~~ 356 (481)
+........+..+++|+.|++++|.+..........+++|+.|++++|.--. ......++|+.|.++++.+
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 3333333445677778888877733222222222335777778877765221 1233457777777777655
Q ss_pred CCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097 357 PFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI 436 (481)
Q Consensus 357 ~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 436 (481)
.......+. .+++|+.+++..+.-. ...+..+.+++.| .|+++.+....+++.. +..+++|+.|+++.+.
T Consensus 489 ~~~~~~~~~-~l~~L~~L~Ls~N~l~----~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 489 SSIDQHAFT-SLKMMNHVDLSHNRLT----SSSIEALSHLKGI-YLNLASNHISIILPSL----LPILSQQRTINLRQNP 558 (606)
T ss_dssp CEECTTTTT-TCTTCCEEECCSSCCC----GGGGGGGTTCCSC-EEECCSSCCCCCCGGG----HHHHHTSSEEECTTCC
T ss_pred CccChhhhc-cccCCCEEECCCCccC----cCChhHhCccccc-EEECcCCcccccCHhh----cccCCCCCEEeCCCCC
Confidence 433322222 6677777777655411 1123455566665 5777666544443221 2235667777776653
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=157.01 Aligned_cols=149 Identities=9% Similarity=0.029 Sum_probs=78.4
Q ss_pred hcCCcccEEEecccccccccccccccCCcccEEEecCCCCcc--c---ccccCCCcceeEecccccCCcchhhhhccCCC
Q 036097 296 YHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLA--A---VEIETPNLSKCKYNGGVVPFSSSTALKLLETD 370 (481)
Q Consensus 296 ~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~--~---~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~ 370 (481)
..+++|+.|++++|.+..........+++|+.|++++|.--. . .....++|++|.++++.+...........+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 456677777777643322222222345677777777654211 1 12345777777777766554221111124567
Q ss_pred ccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhh-
Q 036097 371 LNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDG- 449 (481)
Q Consensus 371 L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~- 449 (481)
|+.+++..+.-. ...+..++ .+|+.|+++.+....+|+. +..+++|++|+++.+.-.. ++.
T Consensus 401 L~~L~Ls~N~l~----~~~~~~l~--~~L~~L~Ls~N~l~~ip~~-----~~~l~~L~~L~L~~N~l~~-------l~~~ 462 (520)
T 2z7x_B 401 LLSLNMSSNILT----DTIFRCLP--PRIKVLDLHSNKIKSIPKQ-----VVKLEALQELNVASNQLKS-------VPDG 462 (520)
T ss_dssp CCEEECCSSCCC----GGGGGSCC--TTCCEEECCSSCCCCCCGG-----GGGCTTCCEEECCSSCCCC-------CCTT
T ss_pred CCEEECcCCCCC----cchhhhhc--ccCCEEECCCCcccccchh-----hhcCCCCCEEECCCCcCCc-------cCHH
Confidence 777777555310 11222332 2334477776665566654 2246677777777664211 122
Q ss_pred hhhcCcccceEEE
Q 036097 450 LLWMSPHVDTVTI 462 (481)
Q Consensus 450 ll~~~p~L~~L~l 462 (481)
.+..+++|+.|.+
T Consensus 463 ~~~~l~~L~~L~l 475 (520)
T 2z7x_B 463 IFDRLTSLQKIWL 475 (520)
T ss_dssp TTTTCTTCCEEEC
T ss_pred HhccCCcccEEEC
Confidence 3566777877777
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=1.2e-15 Score=157.87 Aligned_cols=170 Identities=14% Similarity=0.041 Sum_probs=109.0
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
+++++|+++.+ .. ....|..+..+++|++|++++|.+...++.....+++|++|+++++.+.+.. ...+..+++|+
T Consensus 26 ~~L~~L~Ls~n--~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSFN--KI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCSS--CC-CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCC
T ss_pred CCccEEECcCC--cc-CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCc
Confidence 57888888776 21 1223455677888999999888887766556677888899988888776422 22357788888
Q ss_pred eeEeeeecCcc--e-EeecCCCCCcEEEEccCCCCceEE----EecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE-
Q 036097 216 DLIFEFCEGLK--S-IKLFGRSKLRDIKIKGGREAEEVN----INALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC- 285 (481)
Q Consensus 216 ~L~l~~~~~~~--~-l~i~~~~~L~~L~l~~~~~~~~~~----~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~- 285 (481)
+|++++|.--. . -.+..+++|+.|+++++.....+. ..+++|+.|+++++. +..+..+..+++|++|++.
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 88888874211 1 134557888888888876333332 246778888888762 2244556667777777766
Q ss_pred echhhhH-HhhhcCCcccEEEeccc
Q 036097 286 ITSVVDE-TLSYHITRLVVLECLGL 309 (481)
Q Consensus 286 ~~~~~~~-~~~~~~~~L~~L~L~~~ 309 (481)
-....+. .....+++|+.|++++|
T Consensus 182 n~~~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 182 SESAFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp SBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred CcccccchhhHhhcccccEEEccCC
Confidence 1111122 22345666777766664
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.60 E-value=3e-15 Score=159.14 Aligned_cols=288 Identities=10% Similarity=-0.022 Sum_probs=132.7
Q ss_pred ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChH----HHH----HHhcCCCccceeEeeeecCcc--eE
Q 036097 159 VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQ----VIE----NLVAGCPLIEDLIFEFCEGLK--SI 228 (481)
Q Consensus 159 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~l~----~l~~~~p~Le~L~l~~~~~~~--~l 228 (481)
+..+++|++|++++|.+...++.....+++|++|++.++..... .+. ..+..+++|++|++++|.-.. ..
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 347 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347 (680)
T ss_dssp TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence 33455555555555554443333344455555555544322110 000 013445666666665553111 11
Q ss_pred eecCCCCCcEEEEccCC-CCceEE------EecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE---echhhhHHhhh
Q 036097 229 KLFGRSKLRDIKIKGGR-EAEEVN------INALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC---ITSVVDETLSY 296 (481)
Q Consensus 229 ~i~~~~~L~~L~l~~~~-~~~~~~------~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~ 296 (481)
.+..+++|+.|++++|. ....+. ...++|+.|+++++. +..+..+..+++|+.|+++ +++......+.
T Consensus 348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 427 (680)
T 1ziw_A 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427 (680)
T ss_dssp TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence 12345666666666553 111111 012455666665551 1123345566666666665 22222223445
Q ss_pred cCCcccEEEeccccc---------------------cc-----ccccccccCCcccEEEecCCCCcccc----cccCCCc
Q 036097 297 HITRLVVLECLGLIV---------------------CF-----ELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNL 346 (481)
Q Consensus 297 ~~~~L~~L~L~~~~~---------------------c~-----~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L 346 (481)
++++|+.|++++|.. +. ........+++|+.|++++|. +..+ ....++|
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L 506 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKL 506 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhcccccc
Confidence 556666666665321 10 000111123556666666543 2222 2234666
Q ss_pred ceeEecccccCCcchhh-------hhccCCCccEEEEeeChhhHHHHHHHH-hhcccceeeEEEEEEeeceeeechhhhc
Q 036097 347 SKCKYNGGVVPFSSSTA-------LKLLETDLNLYTINFDPQWYVKFIELI-AKFHQWSKVLNLLSECGESVIVPKELRQ 418 (481)
Q Consensus 347 ~~L~~~~~~~~~~~~~~-------l~~~~~~L~~l~l~~~~~~~~~~~~~~-~~l~~L~~l~~L~i~~~~~~~~~~~~~~ 418 (481)
+.|.++++.+......+ ....+++|+.+++..+. +..++ ..+.++..|+.|+++++....+|+.
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-----l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~--- 578 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-----FDEIPVEVFKDLFELKIIDLGLNNLNTLPAS--- 578 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---
T ss_pred CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-----CCCCCHHHcccccCcceeECCCCCCCcCCHh---
Confidence 66666665443211000 01255666666665443 11121 2244455555577776655555533
Q ss_pred cCCCCCCCCceEEEEecccchhhhHHHHHhhhhh-cCcccceEEE
Q 036097 419 ILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLW-MSPHVDTVTI 462 (481)
Q Consensus 419 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~-~~p~L~~L~l 462 (481)
.+..+.+|+.|+++.+.-.. ..+..+. .+++|+.|.+
T Consensus 579 -~~~~l~~L~~L~L~~N~l~~------~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 579 -VFNNQVSLKSLNLQKNLITS------VEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp -TTTTCTTCCEEECTTSCCCB------CCHHHHHHHHTTCSEEEC
T ss_pred -HhCCCCCCCEEECCCCcCCc------cChhHhcccccccCEEEc
Confidence 23446778888887764222 1123333 5788999998
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.59 E-value=1.2e-15 Score=158.12 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=36.3
Q ss_pred cceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 395 QWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 395 ~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
.+..|++|+++++....+|+. ..+++|+.|+++.+.-.+ ..+..+..+++|+.|.+
T Consensus 449 ~l~~L~~L~Ls~N~l~~ip~~------~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 449 FLPRLQELYISRNKLKTLPDA------SLFPVLLVMKISRNQLKS------VPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp CCTTCCEEECCSSCCSSCCCG------GGCTTCCEEECCSSCCCC------CCTTGGGGCTTCCEEEC
T ss_pred cCChhcEEECCCCccCcCCCc------ccCccCCEEecCCCccCC------cCHHHHhcCcccCEEEe
Confidence 344445588887766666632 235788888888765322 23455677888998888
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=7.1e-16 Score=165.96 Aligned_cols=287 Identities=9% Similarity=0.003 Sum_probs=200.2
Q ss_pred cCCcccCCCCccEEEEcCeeccC------------------CCCCCCc--CCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 155 LPQMVVCSETVNVLDLFGCILLE------------------FPGRNSV--KLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 155 l~~~~~~~~~L~~L~L~~~~~~~------------------~~~~~~~--~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
+|..+.++++|++|+|++|.+.. +|. ... .+++|++|+|++|.+... ++..+..+++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCC
Confidence 88888999999999999999877 443 444 899999999999976542 22447789999
Q ss_pred ceeEeeeecCcce--E---------eecCCCCCcEEEEccCCCC--ce--EEEecCCccEEEEcCC-CCCCceeccCCCC
Q 036097 215 EDLIFEFCEGLKS--I---------KLFGRSKLRDIKIKGGREA--EE--VNINALNGHSITVVSP-LPSGKINEVSCKN 278 (481)
Q Consensus 215 e~L~l~~~~~~~~--l---------~i~~~~~L~~L~l~~~~~~--~~--~~~~~p~L~~L~l~~~-~~~~~~~~~~~~~ 278 (481)
++|++++|..+.. + ....+++|+.|++++|..- .. ....+++|+.|+++++ ....+ .+..+++
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~ 596 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVK 596 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSE
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCc
Confidence 9999999863321 1 1224579999999998722 22 2236789999999998 33444 8899999
Q ss_pred CcEEEEE---echhhhHHhhhcCCc-ccEEEeccccccccccccccc--CCcccEEEecCCCCccc---cc-----ccCC
Q 036097 279 LKSLFLC---ITSVVDETLSYHITR-LVVLECLGLIVCFELQNIKIS--SPSLKRLEIFKCTKLAA---VE-----IETP 344 (481)
Q Consensus 279 L~~L~l~---~~~~~~~~~~~~~~~-L~~L~L~~~~~c~~l~~l~~~--~~~L~~L~l~~c~~l~~---~~-----~~~p 344 (481)
|+.|+++ ++ .++..+..+++ |+.|++++|.+. .+...... .++|+.|++++|.--.. +. ...+
T Consensus 597 L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 597 LTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp ESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred ceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 9999987 44 45556778888 999999995433 22222112 24599999999753221 11 2346
Q ss_pred CcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhh--------cccceeeEEEEEEeeceeeechhh
Q 036097 345 NLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAK--------FHQWSKVLNLLSECGESVIVPKEL 416 (481)
Q Consensus 345 ~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~--------l~~L~~l~~L~i~~~~~~~~~~~~ 416 (481)
+|+.|.++++.+.... ..+...+++|+.+++..+.- ..++.. +.++.+|+.|+++.+....+|+.+
T Consensus 674 ~L~~L~Ls~N~L~~lp-~~~~~~l~~L~~L~Ls~N~L-----~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l 747 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFP-TELFATGSPISTIILSNNLM-----TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747 (876)
T ss_dssp CEEEEECCSSCCCSCC-HHHHHTTCCCSEEECCSCCC-----SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGG
T ss_pred CcCEEEccCCcCCccC-HHHHccCCCCCEEECCCCcC-----CccChHHhccccccccccCCccEEECCCCCCccchHHh
Confidence 8999999998777433 23334789999999966541 112211 223336666999988777777552
Q ss_pred hccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEEe
Q 036097 417 RQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIE 463 (481)
Q Consensus 417 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 463 (481)
. ...+++|+.|+|+.+.-.. ++.-+.++++|+.|.+.
T Consensus 748 ~---~~~l~~L~~L~Ls~N~L~~-------lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 748 R---ATTLPYLSNMDVSYNCFSS-------FPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp S---TTTCTTCCEEECCSSCCSS-------CCCGGGGCTTCCEEECC
T ss_pred h---hccCCCcCEEEeCCCCCCc-------cchhhhcCCCCCEEECC
Confidence 1 1267899999998875321 35556789999999993
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=158.47 Aligned_cols=153 Identities=14% Similarity=0.022 Sum_probs=85.5
Q ss_pred hhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCC
Q 036097 294 LSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLET 369 (481)
Q Consensus 294 ~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~ 369 (481)
.+..+++|+.|+++++.... +......+++|+.|++++|.-... ....+++|++|.++++.+.......+. .++
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~ 445 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLS 445 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCT
T ss_pred cccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh-cCC
Confidence 34556666666666622111 111122356777777776542111 223457777777777654433222222 677
Q ss_pred CccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeee-chhhhccCCCCCCCCceEEEEecccchhhhHHHHHh
Q 036097 370 DLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIV-PKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVD 448 (481)
Q Consensus 370 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~ 448 (481)
+|+.+++..+.... ..++..+..+.+|+.|+++.+..... |+. +..+++|++|+++.+.-.. ..+
T Consensus 446 ~L~~L~l~~n~l~~---~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~------~~~ 511 (570)
T 2z63_A 446 SLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLEQLSPTA-----FNSLSSLQVLNMASNQLKS------VPD 511 (570)
T ss_dssp TCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTSCCCEECTTT-----TTTCTTCCEEECCSSCCSC------CCT
T ss_pred cCcEEECcCCcCcc---ccchhhhhcccCCCEEECCCCccccCChhh-----hhcccCCCEEeCCCCcCCC------CCH
Confidence 88888776554110 11234455555666688886655444 323 5567888999888764222 224
Q ss_pred hhhhcCcccceEEE
Q 036097 449 GLLWMSPHVDTVTI 462 (481)
Q Consensus 449 ~ll~~~p~L~~L~l 462 (481)
..+..+|+|+.|.+
T Consensus 512 ~~~~~l~~L~~L~l 525 (570)
T 2z63_A 512 GIFDRLTSLQKIWL 525 (570)
T ss_dssp TTTTTCTTCCEEEC
T ss_pred HHhhcccCCcEEEe
Confidence 55677899999988
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.58 E-value=7.2e-16 Score=161.65 Aligned_cols=262 Identities=12% Similarity=0.096 Sum_probs=184.9
Q ss_pred ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcE
Q 036097 159 VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRD 238 (481)
Q Consensus 159 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~ 238 (481)
+..+++|+.|+++++.+...+ ....+++|++|++++|.+.. +.. + .+++|++|++++|.......+..+++|+.
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~--lp~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~ 354 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQ--FPT-L-DLPFLKSLTLTMNKGSISFKKVALPSLSY 354 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCSS--CCC-C-CCSSCCEEEEESCSSCEECCCCCCTTCCE
T ss_pred cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCcc--ccc-C-CCCccceeeccCCcCccchhhccCCCCCE
Confidence 566899999999999986665 56678999999999998833 222 2 89999999999997666666777899999
Q ss_pred EEEccCCCC-----ceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccc
Q 036097 239 IKIKGGREA-----EEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGL 309 (481)
Q Consensus 239 L~l~~~~~~-----~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~ 309 (481)
|+++++... ......+++|+.|+++++. ...+..+..+++|+.|+++ +........+..+++|+.|++++|
T Consensus 355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred EECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 999988611 1112357899999999882 2234678889999999987 443333356678999999999994
Q ss_pred ccccccccccccCCcccEEEecCCCCcc----cccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHH
Q 036097 310 IVCFELQNIKISSPSLKRLEIFKCTKLA----AVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVK 385 (481)
Q Consensus 310 ~~c~~l~~l~~~~~~L~~L~l~~c~~l~----~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~ 385 (481)
............+++|+.|++++|.--. ......++|+.|.++++.+.......+. .+++|+.+++..+.-.
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~--- 510 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLNMSHNNLL--- 510 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCS---
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc-ccccCCEEECCCCcCC---
Confidence 3322222233456899999999875322 2334568999999999876544333333 7889999998766411
Q ss_pred HHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCC-CCceEEEEecc
Q 036097 386 FIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLS-GVKHLNFSISI 436 (481)
Q Consensus 386 ~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~ 436 (481)
...+..+.++.+|+.|+++++....+|+. +..+. +|++|+++.+.
T Consensus 511 -~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-----~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 511 -FLDSSHYNQLYSLSTLDCSFNRIETSKGI-----LQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp -CEEGGGTTTCTTCCEEECTTSCCCCEESC-----GGGSCTTCCEEECCSCC
T ss_pred -CcCHHHccCCCcCCEEECCCCcCcccCHh-----HhhhcccCcEEEccCCC
Confidence 01134555666666699988877677754 33343 69999998764
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=3.5e-16 Score=163.62 Aligned_cols=275 Identities=12% Similarity=0.044 Sum_probs=166.2
Q ss_pred hCCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 135 ESTVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
.++++.|++..+ ....++. .+..+++|++|+|++|.+...++.....+++|++|+|++|.+.. ....++..+++
T Consensus 74 l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~ 148 (597)
T 3oja_B 74 FRQVELLNLNDL----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPK 148 (597)
T ss_dssp CCCCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred CCCCcEEECCCC----CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCC
Confidence 367777777665 2233333 55567788888888887766665555677888888888776653 12223466778
Q ss_pred cceeEeeeecCcce--EeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEEechhhh
Q 036097 214 IEDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVD 291 (481)
Q Consensus 214 Le~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 291 (481)
|++|++++|.-... -.+..+++|+.|+++++..-......+++|+.|+++++.- ..+...++|+.|+++ ...+
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l---~~l~~~~~L~~L~ls--~n~l 223 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL---STLAIPIAVEELDAS--HNSI 223 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCC---SEEECCTTCSEEECC--SSCC
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcc---ccccCCchhheeecc--CCcc
Confidence 88888877742111 1244567788888877752111122457777777777621 123445677777765 1111
Q ss_pred HHh-hhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhc
Q 036097 292 ETL-SYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKL 366 (481)
Q Consensus 292 ~~~-~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~ 366 (481)
..+ ....++|+.|++++|.+... .....+++|+.|++++|. +.. .....++|+.|.++++.+..... ...
T Consensus 224 ~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~ 298 (597)
T 3oja_B 224 NVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNL--YGQ 298 (597)
T ss_dssp CEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEEC--SSS
T ss_pred cccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCCc--ccc
Confidence 111 12236888999888443221 223446889999999865 332 23456889999998876654221 112
Q ss_pred cCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097 367 LETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI 436 (481)
Q Consensus 367 ~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 436 (481)
.+++|+.+++..+.-. .++..+..+.+|..|+++++....++ +..+++|+.|+++.+.
T Consensus 299 ~l~~L~~L~Ls~N~l~-----~i~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSSC
T ss_pred cCCCCcEEECCCCCCC-----ccCcccccCCCCCEEECCCCCCCCcC-------hhhcCCCCEEEeeCCC
Confidence 5789999998766511 12223333344444999877655444 5567889999998875
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.58 E-value=1.7e-14 Score=139.09 Aligned_cols=225 Identities=19% Similarity=0.220 Sum_probs=142.5
Q ss_pred HHHHHhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhc
Q 036097 130 VCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVA 209 (481)
Q Consensus 130 ~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~ 209 (481)
+......+++.|++..+ ....+|..++.+++|++|+|++|.+..+| .....+++|++|+|++|.+. .+...+.
T Consensus 75 l~~~~~~~l~~L~L~~n----~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~--~lp~~l~ 147 (328)
T 4fcg_A 75 LEDATQPGRVALELRSV----PLPQFPDQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLR--ALPASIA 147 (328)
T ss_dssp HHHHTSTTCCEEEEESS----CCSSCCSCGGGGTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEESCCCC--CCCGGGG
T ss_pred HhcccccceeEEEccCC----CchhcChhhhhCCCCCEEECCCCCccchh-HHHhccCCCCEEECCCCccc--cCcHHHh
Confidence 34445578999999887 34488999999999999999999987555 35678999999999999886 3333477
Q ss_pred CCCccceeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCC-CCCCceeccCCCCCcEEEEE---
Q 036097 210 GCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSP-LPSGKINEVSCKNLKSLFLC--- 285 (481)
Q Consensus 210 ~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~--- 285 (481)
.+++|++|++++|.....+. ..+....+. .....+++|+.|+++++ ....+..+..+++|++|+++
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p----~~~~~~~~~------~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELP----EPLASTDAS------GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCC----SCSEEEC-C------CCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC
T ss_pred cCcCCCEEECCCCCCccccC----hhHhhccch------hhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC
Confidence 89999999999986544321 011111000 00123455555555554 22334456667777777766
Q ss_pred echhhhHHhhhcCCcccEEEecccccccccccc---cccCCcccEEEecCCCCccccc---ccCCCcceeEecccccCCc
Q 036097 286 ITSVVDETLSYHITRLVVLECLGLIVCFELQNI---KISSPSLKRLEIFKCTKLAAVE---IETPNLSKCKYNGGVVPFS 359 (481)
Q Consensus 286 ~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l---~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~L~~~~~~~~~~ 359 (481)
++ .+...+..+++|+.|++++ |.....+ ...+++|+.|++++|.....++ ...++|+.|.++++.....
T Consensus 218 l~--~l~~~l~~l~~L~~L~Ls~---n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 218 LS--ALGPAIHHLPKLEELDLRG---CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp CC--CCCGGGGGCTTCCEEECTT---CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred CC--cCchhhccCCCCCEEECcC---CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 22 2333456777777777777 4333322 2335677777777776544432 3567777787777655444
Q ss_pred chhhhhccCCCccEEEEe
Q 036097 360 SSTALKLLETDLNLYTIN 377 (481)
Q Consensus 360 ~~~~l~~~~~~L~~l~l~ 377 (481)
....+. ++++++.+.+.
T Consensus 293 iP~~l~-~L~~L~~l~l~ 309 (328)
T 4fcg_A 293 LPSLIA-QLPANCIILVP 309 (328)
T ss_dssp CCGGGG-GSCTTCEEECC
T ss_pred ccHHHh-hccCceEEeCC
Confidence 333333 67777777664
No 32
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=1.9e-15 Score=152.88 Aligned_cols=343 Identities=14% Similarity=0.052 Sum_probs=201.8
Q ss_pred eeEEEEEEEeeCChhhHHHHHHH-HHhCCeeEEEEEEeecCCcccccCCcccCCC----CccEEEEcCeeccCC----CC
Q 036097 110 VEKLRFKASFLDDSELADRCVCY-AIESTVKELELHTILRGDRLYHLPQMVVCSE----TVNVLDLFGCILLEF----PG 180 (481)
Q Consensus 110 l~~l~l~~~~~~~~~~~~~~~~~-~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~----~L~~L~L~~~~~~~~----~~ 180 (481)
++.+.+.... -........... ...+++++|+++.+ .............++ +|++|+|++|.+.+. .+
T Consensus 30 L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 30 CQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN--ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp CSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC--CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred ccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC--cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 8888888552 222222222111 12378999999876 332222221112233 799999999987531 12
Q ss_pred CCCcCCCcceEEEecceecChHHHHHHh----cCCCccceeEeeeecCcc----eE--eecCCCCCcEEEEccCCCC---
Q 036097 181 RNSVKLPSLRKLRLAQVRASDQVIENLV----AGCPLIEDLIFEFCEGLK----SI--KLFGRSKLRDIKIKGGREA--- 247 (481)
Q Consensus 181 ~~~~~~~~L~~L~L~~~~~~~~~l~~l~----~~~p~Le~L~l~~~~~~~----~l--~i~~~~~L~~L~l~~~~~~--- 247 (481)
.....+++|++|+++++.+.+..+..+. ...++|++|++++|.--. .+ .+..+++|+.|+++++..-
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 2345788999999999988765444333 235689999999884211 11 2234689999999988611
Q ss_pred -ceEE----EecCCccEEEEcCCCCC------CceeccCCCCCcEEEEE---echhhhHHh----hhcCCcccEEEeccc
Q 036097 248 -EEVN----INALNGHSITVVSPLPS------GKINEVSCKNLKSLFLC---ITSVVDETL----SYHITRLVVLECLGL 309 (481)
Q Consensus 248 -~~~~----~~~p~L~~L~l~~~~~~------~~~~~~~~~~L~~L~l~---~~~~~~~~~----~~~~~~L~~L~L~~~ 309 (481)
..+. ...++|++|+++++.-. ....+..+++|++|+++ +++..+..+ ...+++|+.|+++++
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 1111 12468999999998322 24456788999999988 555444332 336889999999983
Q ss_pred ccccc----cccccccCCcccEEEecCCCCccc---------ccccCCCcceeEecccccCCcchhhh---hccCCCccE
Q 036097 310 IVCFE----LQNIKISSPSLKRLEIFKCTKLAA---------VEIETPNLSKCKYNGGVVPFSSSTAL---KLLETDLNL 373 (481)
Q Consensus 310 ~~c~~----l~~l~~~~~~L~~L~l~~c~~l~~---------~~~~~p~L~~L~~~~~~~~~~~~~~l---~~~~~~L~~ 373 (481)
.+... +......+++|++|+++++. +.+ +....++|++|.++++.+.......+ ...+++|+.
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 22110 11112236889999999875 332 22233689999999887765422211 125789999
Q ss_pred EEEeeChhhHHHHHHHHhhccc-ceeeEEEEEEeecee-----eechhhhccCCCCCCCCceEEEEecccchhhhHHHHH
Q 036097 374 YTINFDPQWYVKFIELIAKFHQ-WSKVLNLLSECGESV-----IVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVV 447 (481)
Q Consensus 374 l~l~~~~~~~~~~~~~~~~l~~-L~~l~~L~i~~~~~~-----~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l 447 (481)
+++..+.-.......+...+.. ...|+.|+++++... .+++. +..+++|++|+++.+.-.. .++..+.
T Consensus 346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-----l~~~~~L~~L~l~~N~i~~-~~~~~l~ 419 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-----LLANHSLRELDLSNNCLGD-AGILQLV 419 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-----HHHCCCCCEEECCSSSCCH-HHHHHHH
T ss_pred EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH-----HHhCCCccEEECCCCCCCH-HHHHHHH
Confidence 9987764222223333333332 334444888866543 33433 3336789999998875322 2122222
Q ss_pred hhhhhcCcccceEEE
Q 036097 448 DGLLWMSPHVDTVTI 462 (481)
Q Consensus 448 ~~ll~~~p~L~~L~l 462 (481)
..+-...++|+.|.+
T Consensus 420 ~~l~~~~~~L~~L~~ 434 (461)
T 1z7x_W 420 ESVRQPGCLLEQLVL 434 (461)
T ss_dssp HHHTSTTCCCCEEEC
T ss_pred HHhccCCcchhheee
Confidence 222233446888877
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=156.47 Aligned_cols=105 Identities=11% Similarity=0.087 Sum_probs=65.9
Q ss_pred hCCeeEEEEEEeecCCcccccC-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCC
Q 036097 135 ESTVKELELHTILRGDRLYHLP-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCP 212 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p 212 (481)
.++++.|+++.+ ....++ ..+..+++|++|+|++|.+...++.....+++|++|+++++.+.. ... .+..++
T Consensus 51 l~~L~~L~Ls~n----~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~l~ 124 (570)
T 2z63_A 51 FPELQVLDLSRC----EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF--PIGHLK 124 (570)
T ss_dssp CSSCCEEECTTC----CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC--SCTTCT
T ss_pred CCCceEEECCCC----cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCc--cccccc
Confidence 356777777665 223343 344567778888888777766655556677788888887776643 111 156778
Q ss_pred ccceeEeeeecCcc---eEeecCCCCCcEEEEccCC
Q 036097 213 LIEDLIFEFCEGLK---SIKLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 213 ~Le~L~l~~~~~~~---~l~i~~~~~L~~L~l~~~~ 245 (481)
+|++|++++|.-.. .-.+..+++|+.|+++++.
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 88888887774211 1124456778888877764
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.55 E-value=2.8e-15 Score=151.48 Aligned_cols=288 Identities=12% Similarity=0.046 Sum_probs=179.1
Q ss_pred hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccC--CCCCCCcCCCcceEEEecceecChHHHHHHhcCCC
Q 036097 135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLE--FPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCP 212 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 212 (481)
.+++++|+++.+ . -....|..+..+++|++|+|++|.+.. ........+++|++|+++++.+.+.....++..++
T Consensus 78 l~~L~~L~Ls~n--~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 78 LSSLIILKLDYN--Q-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp CTTCCEEECTTC--T-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred cccCCEEeCCCC--c-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 378999999876 2 223346677889999999999998864 22223567899999999999886533334477899
Q ss_pred ccceeEeeeecCcce--EeecC--CCCCcEEEEccCCC--CceE---------EEecCCccEEEEcCCCCC--Cceec--
Q 036097 213 LIEDLIFEFCEGLKS--IKLFG--RSKLRDIKIKGGRE--AEEV---------NINALNGHSITVVSPLPS--GKINE-- 273 (481)
Q Consensus 213 ~Le~L~l~~~~~~~~--l~i~~--~~~L~~L~l~~~~~--~~~~---------~~~~p~L~~L~l~~~~~~--~~~~~-- 273 (481)
+|++|++++|.-... ..+.. ..+|+.|+++++.. .... ....++|+.|+++++.-. .+..+
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 999999998852111 11111 26778888877751 1110 113467888888887221 22222
Q ss_pred -cCCCCCcEEEEE---echhh-----h----HHhh--hcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc
Q 036097 274 -VSCKNLKSLFLC---ITSVV-----D----ETLS--YHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA 338 (481)
Q Consensus 274 -~~~~~L~~L~l~---~~~~~-----~----~~~~--~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~ 338 (481)
...++|+.|++. ..... + ...+ ...++|+.|+++++.+..........+++|+.|++++|. +..
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~ 313 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INK 313 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCE
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccc
Confidence 223667777655 00000 0 0001 134688888888843322222333446788888888865 332
Q ss_pred ----ccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHH-HhhcccceeeEEEEEEeeceeeec
Q 036097 339 ----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIEL-IAKFHQWSKVLNLLSECGESVIVP 413 (481)
Q Consensus 339 ----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~-~~~l~~L~~l~~L~i~~~~~~~~~ 413 (481)
.....++|++|.++++.+.......+. .+++|+.+++..+.- ..+ +..+.++.+|+.|+++++....+|
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE-NLDKLEVLDLSYNHI-----RALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGT-TCTTCCEEECCSSCC-----CEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhc-CcccCCEEECCCCcc-----cccChhhccccccccEEECCCCccccCC
Confidence 223568888888888776544333333 788899998866541 111 244555566666999988766666
Q ss_pred hhhhccCCCCCCCCceEEEEecc
Q 036097 414 KELRQILPPPLSGVKHLNFSISI 436 (481)
Q Consensus 414 ~~~~~~~~~~l~~L~~L~l~~~~ 436 (481)
+. .+..+++|++|+++.+.
T Consensus 388 ~~----~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 388 DG----IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TT----TTTTCTTCCEEECCSSC
T ss_pred Hh----HhccCCcccEEEccCCC
Confidence 43 24567899999998875
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.55 E-value=1.2e-14 Score=150.86 Aligned_cols=148 Identities=9% Similarity=0.001 Sum_probs=84.0
Q ss_pred hcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc------ccccCCCcceeEecccccCCcchhhhhccCC
Q 036097 296 YHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA------VEIETPNLSKCKYNGGVVPFSSSTALKLLET 369 (481)
Q Consensus 296 ~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~------~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~ 369 (481)
..+++|+.|++++|.+..........+++|+.|+++++. +.. .....++|+.|.++++.+...........++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 456777777777743322222222345778888887754 332 1235577888888776655411111112567
Q ss_pred CccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhh
Q 036097 370 DLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDG 449 (481)
Q Consensus 370 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 449 (481)
+|+.+++..+.-. ...+..++ .+|+.|+++.+....+|+. +..+++|+.|+++.+.-.. ++.
T Consensus 429 ~L~~L~l~~n~l~----~~~~~~l~--~~L~~L~L~~N~l~~ip~~-----~~~l~~L~~L~L~~N~l~~-------l~~ 490 (562)
T 3a79_B 429 SILVLNLSSNMLT----GSVFRCLP--PKVKVLDLHNNRIMSIPKD-----VTHLQALQELNVASNQLKS-------VPD 490 (562)
T ss_dssp TCCEEECCSSCCC----GGGGSSCC--TTCSEEECCSSCCCCCCTT-----TTSSCCCSEEECCSSCCCC-------CCT
T ss_pred cCCEEECCCCCCC----cchhhhhc--CcCCEEECCCCcCcccChh-----hcCCCCCCEEECCCCCCCC-------CCH
Confidence 7777777655411 12233332 2344488887766666654 3356788888887765221 122
Q ss_pred -hhhcCcccceEEE
Q 036097 450 -LLWMSPHVDTVTI 462 (481)
Q Consensus 450 -ll~~~p~L~~L~l 462 (481)
.+..+|+|+.|.+
T Consensus 491 ~~~~~l~~L~~L~l 504 (562)
T 3a79_B 491 GVFDRLTSLQYIWL 504 (562)
T ss_dssp TSTTTCTTCCCEEC
T ss_pred HHHhcCCCCCEEEe
Confidence 3667888888887
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=148.62 Aligned_cols=284 Identities=10% Similarity=-0.033 Sum_probs=157.5
Q ss_pred CCeeEEEEEEeecCCcccccC-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLP-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
+++++|+++.+ ....++ ..+..+++|++|+|++|.+...++.....+++|++|+|+++.+.. +... .+++|
T Consensus 21 ~~L~~L~Ls~n----~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQN----YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCSS----CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCC
T ss_pred ccccEEECCCC----cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCc
Confidence 67888888776 223343 345668888888888888766644456678888888888887753 1111 67888
Q ss_pred ceeEeeeecCcc-e--EeecCCCCCcEEEEccCCCCceEEEecCCc--cEEEEcCCCC----CCcee-------------
Q 036097 215 EDLIFEFCEGLK-S--IKLFGRSKLRDIKIKGGREAEEVNINALNG--HSITVVSPLP----SGKIN------------- 272 (481)
Q Consensus 215 e~L~l~~~~~~~-~--l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L--~~L~l~~~~~----~~~~~------------- 272 (481)
++|++++|.-.. . -.+..+++|+.|+++++.........+++| +.|+++++.- ..+..
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 888888875221 1 234567888888888876222222245566 8888876521 11111
Q ss_pred -------------------------------------------ccCCCCCcEEEEE---echhhhHHhhh--cCCcccEE
Q 036097 273 -------------------------------------------EVSCKNLKSLFLC---ITSVVDETLSY--HITRLVVL 304 (481)
Q Consensus 273 -------------------------------------------~~~~~~L~~L~l~---~~~~~~~~~~~--~~~~L~~L 304 (481)
+..+++|+.|++. +++..+..+.. ..++|+.|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 2233444444444 22222222221 23466777
Q ss_pred Eeccccccccccccc-----ccC--------------------------CcccEEEecCCCCccccc--ccCCCcceeEe
Q 036097 305 ECLGLIVCFELQNIK-----ISS--------------------------PSLKRLEIFKCTKLAAVE--IETPNLSKCKY 351 (481)
Q Consensus 305 ~L~~~~~c~~l~~l~-----~~~--------------------------~~L~~L~l~~c~~l~~~~--~~~p~L~~L~~ 351 (481)
+++++.....+.... ... .+|+.|++++|. +..+. ...++|++|.+
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEEC
T ss_pred EeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc-cccccchhhCCcccEEEe
Confidence 766633221111111 112 235555555543 22222 56788999998
Q ss_pred cccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceee-echhhhccCCCCCCCCceE
Q 036097 352 NGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVI-VPKELRQILPPPLSGVKHL 430 (481)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~-~~~~~~~~~~~~l~~L~~L 430 (481)
+++.+.......+ ..+++|+.+++..+.-. .+..++..+..+.+|+.|+++.+.... +|+. .+..+++|++|
T Consensus 332 s~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~--~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~----~~~~l~~L~~L 404 (520)
T 2z7x_B 332 SNNLLTDTVFENC-GHLTELETLILQMNQLK--ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG----DCSWTKSLLSL 404 (520)
T ss_dssp CSSCCCTTTTTTC-CCCSSCCEEECCSSCCC--BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC----SCCCCTTCCEE
T ss_pred ECCccChhhhhhh-ccCCCCCEEEccCCccC--ccccchHHHhhCCCCCEEECCCCcCCcccccc----hhccCccCCEE
Confidence 8877665333223 27788888888665521 122334444455555558888775444 5532 12334455555
Q ss_pred EEEec
Q 036097 431 NFSIS 435 (481)
Q Consensus 431 ~l~~~ 435 (481)
+++.+
T Consensus 405 ~Ls~N 409 (520)
T 2z7x_B 405 NMSSN 409 (520)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 55544
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=157.55 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=52.5
Q ss_pred CCccEEEEcCCC--CCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEE
Q 036097 255 LNGHSITVVSPL--PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLE 329 (481)
Q Consensus 255 p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~ 329 (481)
++|+.|+++++. +..+..+..+++|+.|+++ ++. .....+.++++|+.|++++|.+..........+++|+.|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 567777777662 1233456777888888876 221 1223456677777777777432211112222345666666
Q ss_pred ecCCCCcccc----cccCCCcceeEeccccc
Q 036097 330 IFKCTKLAAV----EIETPNLSKCKYNGGVV 356 (481)
Q Consensus 330 l~~c~~l~~~----~~~~p~L~~L~~~~~~~ 356 (481)
++++. +..+ ....++|+.|.++++.+
T Consensus 345 L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 345 LQKNH-IAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp CCSCC-CCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred CCCCC-CCccChhhhcCCCCCCEEECCCCCC
Confidence 66543 2221 12345566665555443
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=158.11 Aligned_cols=286 Identities=15% Similarity=0.049 Sum_probs=157.7
Q ss_pred hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeecc-CCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILL-EFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
.+++++|+|+.+ .. ....|..+..+++|++|+|++|... .+++.....+++|++|+|++|.+.... ...+..+++
T Consensus 23 p~~l~~LdLs~N--~i-~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFN--YI-RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH-PDAFQGLFH 98 (844)
T ss_dssp CTTCCEEEEESC--CC-CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC-TTSSCSCSS
T ss_pred CCCcCEEECCCC--cC-CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC-HhHccCCcc
Confidence 357888888876 22 2233556667888888888887432 333445667888888888888765321 223667888
Q ss_pred cceeEeeeecCcce----EeecCCCCCcEEEEccCCCCc----eEEEecCCccEEEEcCC--CCCCceeccCC--CCCcE
Q 036097 214 IEDLIFEFCEGLKS----IKLFGRSKLRDIKIKGGREAE----EVNINALNGHSITVVSP--LPSGKINEVSC--KNLKS 281 (481)
Q Consensus 214 Le~L~l~~~~~~~~----l~i~~~~~L~~L~l~~~~~~~----~~~~~~p~L~~L~l~~~--~~~~~~~~~~~--~~L~~ 281 (481)
|++|++++|.-... ..+..+++|+.|++++|.... .....+++|+.|+++++ .+..+..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 88888887743221 125567888888888776211 11235678888888877 22233344444 77888
Q ss_pred EEEE---echhhhHHhhhcCC------cccEEEecccccccccc-cc------------c--------------------
Q 036097 282 LFLC---ITSVVDETLSYHIT------RLVVLECLGLIVCFELQ-NI------------K-------------------- 319 (481)
Q Consensus 282 L~l~---~~~~~~~~~~~~~~------~L~~L~L~~~~~c~~l~-~l------------~-------------------- 319 (481)
|++. +.... ...+..++ +|+.|++++|....... .+ .
T Consensus 179 L~L~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~ 257 (844)
T 3j0a_A 179 FSLAANSLYSRV-SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257 (844)
T ss_dssp CEECCSBSCCCC-CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred EECCCCcccccc-ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence 8776 22211 11112222 38888888742211100 00 0
Q ss_pred -----ccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHH-
Q 036097 320 -----ISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIEL- 389 (481)
Q Consensus 320 -----~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~- 389 (481)
...++|+.|+++++. +.. .....++|+.|.+.++.+.......+. .+++|+.+++..+.- ..+
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l-----~~~~ 330 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNLL-----GELY 330 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCCC-----SCCC
T ss_pred hhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCCC-----CccC
Confidence 002456667766654 221 223456677777766655433222222 566777777755431 011
Q ss_pred HhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097 390 IAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI 436 (481)
Q Consensus 390 ~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 436 (481)
+..+..+.+|+.|+++.+....++. ..+..+++|+.|+++.+.
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQD----QTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCS----SCSCSCCCCCEEEEETCC
T ss_pred HHHhcCCCCCCEEECCCCCCCccCh----hhhcCCCCCCEEECCCCC
Confidence 2334444455557776554433332 124446677777776654
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.54 E-value=8.8e-15 Score=155.53 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=49.8
Q ss_pred CCeeEEEEEEeecCCcccccC-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHH-hcCCCc
Q 036097 136 STVKELELHTILRGDRLYHLP-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENL-VAGCPL 213 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l-~~~~p~ 213 (481)
.++++|+++.+ ....++ ..+..+++|++|++++|.+...+......+++|++|+++++.+.......+ ...+++
T Consensus 97 ~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 97 TNLTELHLMSN----SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp TTCSEEECCSS----CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred CCCCEEECCCC----ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 56777776654 223344 345567777777777777655544445567777777777776644221111 234677
Q ss_pred cceeEeeee
Q 036097 214 IEDLIFEFC 222 (481)
Q Consensus 214 Le~L~l~~~ 222 (481)
|++|++++|
T Consensus 173 L~~L~L~~n 181 (680)
T 1ziw_A 173 LKKLELSSN 181 (680)
T ss_dssp ESEEECTTC
T ss_pred ccEEECCCC
Confidence 777777765
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.53 E-value=1.8e-14 Score=145.26 Aligned_cols=292 Identities=10% Similarity=-0.003 Sum_probs=185.4
Q ss_pred hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
.+++++|+++.+ ....+| .+..+++|++|++++|.+...+ ...+++|++|+++++.+.+-. +..+++|
T Consensus 41 l~~L~~L~Ls~n----~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L 108 (457)
T 3bz5_A 41 LATLTSLDCHNS----SITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD----VTPLTKL 108 (457)
T ss_dssp HTTCCEEECCSS----CCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC----CTTCTTC
T ss_pred cCCCCEEEccCC----CcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee----cCCCCcC
Confidence 478888888876 233455 5678899999999999886653 567889999999998876531 6778999
Q ss_pred ceeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhh
Q 036097 215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVD 291 (481)
Q Consensus 215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~ 291 (481)
++|++++|. +..+.+..+++|+.|+++++..-..-...+++|+.|+++++.......+..+++|+.|+++ ++. +
T Consensus 109 ~~L~L~~N~-l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--l 185 (457)
T 3bz5_A 109 TYLNCDTNK-LTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE--L 185 (457)
T ss_dssp CEEECCSSC-CSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC--C
T ss_pred CEEECCCCc-CCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce--e
Confidence 999998884 3444567788999999988862111123577889999888732233367888899999887 333 2
Q ss_pred HHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccccc-ccCCCcceeEecccccCCcchhhhhccCCC
Q 036097 292 ETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVE-IETPNLSKCKYNGGVVPFSSSTALKLLETD 370 (481)
Q Consensus 292 ~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~-~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~ 370 (481)
. +..+++|+.|++++|.+.. + -...+++|+.|+++++. +..++ ..+++|+.|.++++.+..... ..+++
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~----~~l~~ 255 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDV----STLSK 255 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCC----TTCTT
T ss_pred c--cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCH----HHCCC
Confidence 2 5678889999988843221 1 12336788888888864 33333 346788888888876654433 35666
Q ss_pred ccEEEEeeChh------hHHHHHHHHhhcccceeeEEEEEEeec-eeeechh---hhccCCCCCCCCceEEEEecccchh
Q 036097 371 LNLYTINFDPQ------WYVKFIELIAKFHQWSKVLNLLSECGE-SVIVPKE---LRQILPPPLSGVKHLNFSISIPFKK 440 (481)
Q Consensus 371 L~~l~l~~~~~------~~~~~~~~~~~l~~L~~l~~L~i~~~~-~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~ 440 (481)
|+.+.+....- .....+.++ +..+.+|+.|+++.+. ...+|.. +....+...++|+.|+++.+.-.+
T Consensus 256 L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~- 332 (457)
T 3bz5_A 256 LTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE- 332 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-
T ss_pred CCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-
Confidence 66665422110 000001111 1223344448887554 3333321 111224445688888887665211
Q ss_pred hhHHHHHhhhhhcCcccceEEE
Q 036097 441 FAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 441 ~~~~~~l~~ll~~~p~L~~L~l 462 (481)
++ +.+||+|+.|.+
T Consensus 333 ------l~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 333 ------LD--VSHNTKLKSLSC 346 (457)
T ss_dssp ------CC--CTTCTTCSEEEC
T ss_pred ------cc--cccCCcCcEEEC
Confidence 22 678999999998
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.52 E-value=2.9e-14 Score=137.69 Aligned_cols=262 Identities=12% Similarity=0.023 Sum_probs=146.7
Q ss_pred CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097 163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK 242 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~ 242 (481)
++|++|++++|.+...+......+++|++|+++++.+.+-. ...+..+++|++|++++|. +..+...
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~l~~~----------- 118 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQ-LKELPEK----------- 118 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSC-CSBCCSS-----------
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCc-CCccChh-----------
Confidence 45555666655555444334445555556655555443211 1123445555555555442 1111111
Q ss_pred cCCCCceEEEecCCccEEEEcCCC-C-CCceeccCCCCCcEEEEE---ech-hhhHHhhhcCCcccEEEecccccccccc
Q 036097 243 GGREAEEVNINALNGHSITVVSPL-P-SGKINEVSCKNLKSLFLC---ITS-VVDETLSYHITRLVVLECLGLIVCFELQ 316 (481)
Q Consensus 243 ~~~~~~~~~~~~p~L~~L~l~~~~-~-~~~~~~~~~~~L~~L~l~---~~~-~~~~~~~~~~~~L~~L~L~~~~~c~~l~ 316 (481)
..++|++|+++++. . .....+..+++|+.|+++ +.. ......+..+++|+.|+++++.+ +
T Consensus 119 ----------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l----~ 184 (330)
T 1xku_A 119 ----------MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI----T 184 (330)
T ss_dssp ----------CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC----C
T ss_pred ----------hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc----c
Confidence 11456666666552 1 122346677777777766 222 12334567788888888887322 2
Q ss_pred cccc-cCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHh
Q 036097 317 NIKI-SSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIA 391 (481)
Q Consensus 317 ~l~~-~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~ 391 (481)
.++. ..++|+.|+++++. +.. .....++|+.|.++++.+.......+. .+++|+.+++..+. +..++.
T Consensus 185 ~l~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~-----l~~lp~ 257 (330)
T 1xku_A 185 TIPQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNK-----LVKVPG 257 (330)
T ss_dssp SCCSSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSC-----CSSCCT
T ss_pred cCCccccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCc-----CccCCh
Confidence 2221 13688888888765 332 233567888888888766543322222 67888888887664 113444
Q ss_pred hcccceeeEEEEEEeeceeeechhhhccC--CCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 392 KFHQWSKVLNLLSECGESVIVPKELRQIL--PPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 392 ~l~~L~~l~~L~i~~~~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
.+..+..|+.|+++.+....++...+... ...+..++.|++..+.... ....+..+..+++|+.+.+
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~----~~i~~~~f~~~~~l~~l~L 326 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY----WEIQPSTFRCVYVRAAVQL 326 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG----GGSCGGGGTTCCCGGGEEC
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc----cccCccccccccceeEEEe
Confidence 55566666669999887666664433221 1234678889888765322 2233456777888988877
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.51 E-value=1.9e-13 Score=135.12 Aligned_cols=252 Identities=14% Similarity=0.060 Sum_probs=173.6
Q ss_pred hCCeeEEEEEEeecCCcccccC-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 135 ESTVKELELHTILRGDRLYHLP-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
.+++++|+++.+ ....++ ..+..+++|++|++++|.+...+......+++|++|+++++.+..-. ...+..+++
T Consensus 92 l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~ 166 (390)
T 3o6n_A 92 AHTIQKLYMGFN----AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTS 166 (390)
T ss_dssp CTTCCEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTT
T ss_pred CCCcCEEECCCC----CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCC
Confidence 468999999876 233444 44567999999999999998777655678999999999999875421 223678999
Q ss_pred cceeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhh
Q 036097 214 IEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVV 290 (481)
Q Consensus 214 Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~ 290 (481)
|++|++++|. +..+.+..+++|+.|+++++. +..+ ...++|+.|+++++.-... .....++|+.|+++ +++.
T Consensus 167 L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~n~l~~~- 241 (390)
T 3o6n_A 167 LQNLQLSSNR-LTHVDLSLIPSLFHANVSYNL-LSTL-AIPIAVEELDASHNSINVV-RGPVNVELTILKLQHNNLTDT- 241 (390)
T ss_dssp CCEEECCSSC-CSBCCGGGCTTCSEEECCSSC-CSEE-ECCSSCSEEECCSSCCCEE-ECCCCSSCCEEECCSSCCCCC-
T ss_pred CCEEECCCCc-CCccccccccccceeeccccc-cccc-CCCCcceEEECCCCeeeec-cccccccccEEECCCCCCccc-
Confidence 9999999885 344456667999999998875 2222 2346899999988732211 22446789999987 3332
Q ss_pred hHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc---cccCCCcceeEecccccCCcchhhhhcc
Q 036097 291 DETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV---EIETPNLSKCKYNGGVVPFSSSTALKLL 367 (481)
Q Consensus 291 ~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~~~~~~~l~~~ 367 (481)
..+..+++|+.|++++|.+..........+++|+.|+++++. +..+ ....|+|+.|.++++.+..... .+ ..
T Consensus 242 --~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~-~~ 316 (390)
T 3o6n_A 242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVER-NQ-PQ 316 (390)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCCCCGG-GH-HH
T ss_pred --HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcceecCc-cc-cc
Confidence 456889999999999943322222233346899999999865 4432 3356899999999987653322 12 26
Q ss_pred CCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeec
Q 036097 368 ETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGE 408 (481)
Q Consensus 368 ~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~ 408 (481)
+++|+.+++..+.-- .+ .+..+..|+.|++++|.
T Consensus 317 l~~L~~L~L~~N~i~-----~~--~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 317 FDRLENLYLDHNSIV-----TL--KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp HTTCSEEECCSSCCC-----CC--CCCTTCCCSEEECCSSC
T ss_pred cCcCCEEECCCCccc-----ee--CchhhccCCEEEcCCCC
Confidence 789999999766511 11 13444455559998774
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=4.3e-15 Score=155.35 Aligned_cols=294 Identities=12% Similarity=0.056 Sum_probs=193.1
Q ss_pred hCCeeEEEEEEeecCCcccccCCccc-CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 135 ESTVKELELHTILRGDRLYHLPQMVV-CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
..+++.+++..+ ....+|..++ .+++|++|+|++|.+...++.....+++|++|+|++|.+..- ....+..+++
T Consensus 50 l~~l~~l~l~~~----~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNS----TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSC----EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTT
T ss_pred CCCceEEEeeCC----CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCC
Confidence 367888887665 4566777654 589999999999988777766777889999999999987541 2233578899
Q ss_pred cceeEeeeecCcceEe---ecCCCCCcEEEEccCCCC---ceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEEec
Q 036097 214 IEDLIFEFCEGLKSIK---LFGRSKLRDIKIKGGREA---EEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCIT 287 (481)
Q Consensus 214 Le~L~l~~~~~~~~l~---i~~~~~L~~L~l~~~~~~---~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 287 (481)
|++|++++|. +..+. +..+++|+.|++++|... ......+++|+.|+++++.-. ...+..+++|+.|+++
T Consensus 125 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~L~l~-- 200 (597)
T 3oja_B 125 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVS-- 200 (597)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCCGGGCTTCSEEECC--
T ss_pred CCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcChhhhhhhhhhhcc--
Confidence 9999999884 33332 345789999999888621 111235688899998887321 1246778888888865
Q ss_pred hhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc--ccccCCCcceeEecccccCCcchhhhh
Q 036097 288 SVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA--VEIETPNLSKCKYNGGVVPFSSSTALK 365 (481)
Q Consensus 288 ~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~--~~~~~p~L~~L~~~~~~~~~~~~~~l~ 365 (481)
...+. .+...++|+.|++++| ..-.-.....++|+.|++++|. +.. .....++|+.|.++++.+.......+.
T Consensus 201 ~n~l~-~l~~~~~L~~L~ls~n---~l~~~~~~~~~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 201 YNLLS-TLAIPIAVEELDASHN---SINVVRGPVNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp SSCCS-EEECCTTCSEEECCSS---CCCEEECSCCSCCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cCccc-cccCCchhheeeccCC---cccccccccCCCCCEEECCCCC-CCCChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 11111 1234567888888883 2211112224689999998865 322 334578899999988776544333333
Q ss_pred ccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHH
Q 036097 366 LLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQ 445 (481)
Q Consensus 366 ~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 445 (481)
.+++|+.+++..+.- ..++..+..+.+|+.|+++++....+|+. +..+++|+.|+++.+.-..
T Consensus 276 -~l~~L~~L~Ls~N~l-----~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~-----~~~l~~L~~L~L~~N~l~~------ 338 (597)
T 3oja_B 276 -KMQRLERLYISNNRL-----VALNLYGQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSIVT------ 338 (597)
T ss_dssp -TCSSCCEEECTTSCC-----CEEECSSSCCTTCCEEECCSSCCCCCGGG-----HHHHTTCSEEECCSSCCCC------
T ss_pred -CccCCCEEECCCCCC-----CCCCcccccCCCCcEEECCCCCCCccCcc-----cccCCCCCEEECCCCCCCC------
Confidence 778888888865541 11222223344455588887766666654 3446789999998776322
Q ss_pred HHhhhhhcCcccceEEE
Q 036097 446 VVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 446 ~l~~ll~~~p~L~~L~l 462 (481)
++ +..+|+|+.|.+
T Consensus 339 -~~--~~~~~~L~~L~l 352 (597)
T 3oja_B 339 -LK--LSTHHTLKNLTL 352 (597)
T ss_dssp -CC--CCTTCCCSEEEC
T ss_pred -cC--hhhcCCCCEEEe
Confidence 11 566889999988
No 44
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.50 E-value=9.9e-14 Score=144.44 Aligned_cols=256 Identities=15% Similarity=0.085 Sum_probs=172.8
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
.+++.|+++.+ ....+|..+. ++|++|+|++|.+..++. .+++|++|+|++|.++. + -...++|+
T Consensus 40 ~~l~~L~ls~n----~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~--l---p~~l~~L~ 104 (622)
T 3g06_A 40 NGNAVLNVGES----GLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS--L---PVLPPGLL 104 (622)
T ss_dssp HCCCEEECCSS----CCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC--C---CCCCTTCC
T ss_pred CCCcEEEecCC----CcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc--C---CCCCCCCC
Confidence 46888888765 3447777665 789999999998876653 57899999999998753 1 12678999
Q ss_pred eeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEEechhhhHHh
Q 036097 216 DLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLCITSVVDETL 294 (481)
Q Consensus 216 ~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 294 (481)
+|++++|. +..+.. .+++|+.|++++|. +..+....++|++|+++++. ...+ ...++|+.|++. ...+..+
T Consensus 105 ~L~Ls~N~-l~~l~~-~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~--~N~l~~l 176 (622)
T 3g06_A 105 ELSIFSNP-LTHLPA-LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAY--NNQLTSL 176 (622)
T ss_dssp EEEECSCC-CCCCCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECC--SSCCSCC
T ss_pred EEECcCCc-CCCCCC-CCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCcCCCcC---CccCCCCEEECC--CCCCCCC
Confidence 99998874 222222 34889999998885 22233345899999998882 2222 245678888765 2222222
Q ss_pred hhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccccccCCCcceeEecccccCCcchhhhhccCCCccEE
Q 036097 295 SYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLY 374 (481)
Q Consensus 295 ~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l 374 (481)
...+++|+.|++++|. ++.++...++|+.|++++|. +..++...++|++|.++++.+..... .+++|+.+
T Consensus 177 ~~~~~~L~~L~Ls~N~----l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~-----~l~~L~~L 246 (622)
T 3g06_A 177 PMLPSGLQELSVSDNQ----LASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPV-----LPSELKEL 246 (622)
T ss_dssp CCCCTTCCEEECCSSC----CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCC-----CCTTCCEE
T ss_pred cccCCCCcEEECCCCC----CCCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCC-----CCCcCcEE
Confidence 3567889999998843 33344455788899988854 55566566889999988877665433 66888888
Q ss_pred EEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEeccc
Q 036097 375 TINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIP 437 (481)
Q Consensus 375 ~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 437 (481)
+++.+. +..++..+++|+. |++++|....+|+. +..+++|+.|+|+.+.-
T Consensus 247 ~Ls~N~-----L~~lp~~~~~L~~---L~Ls~N~L~~lp~~-----l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 247 MVSGNR-----LTSLPMLPSGLLS---LSVYRNQLTRLPES-----LIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ECCSSC-----CSCCCCCCTTCCE---EECCSSCCCSCCGG-----GGGSCTTCEEECCSCCC
T ss_pred ECCCCC-----CCcCCcccccCcE---EeCCCCCCCcCCHH-----HhhccccCEEEecCCCC
Confidence 886654 1122233444444 88887776677755 45578899999987753
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.49 E-value=1.5e-13 Score=132.47 Aligned_cols=226 Identities=15% Similarity=0.097 Sum_probs=154.2
Q ss_pred CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--eecCCCCCcEE
Q 036097 162 SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--KLFGRSKLRDI 239 (481)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--~i~~~~~L~~L 239 (481)
.+++++|+|+++.+..+|. ....+++|++|+|+++.+. .+...+..+++|++|++++|.- ..+ .+..+++|+.|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEE
Confidence 4789999999999976664 4567999999999999886 2333467889999999998852 232 24456777777
Q ss_pred EEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE-echhhhHHhhhcCCcccEEEecccccccccccc
Q 036097 240 KIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC-ITSVVDETLSYHITRLVVLECLGLIVCFELQNI 318 (481)
Q Consensus 240 ~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l 318 (481)
++++|.....+. ..+.... ....+..+++|+.|+++ -.-..++..+..+++|+.|++++|.+.. +...
T Consensus 156 ~L~~n~~~~~~p---~~~~~~~-------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~ 224 (328)
T 4fcg_A 156 SIRACPELTELP---EPLASTD-------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPA 224 (328)
T ss_dssp EEEEETTCCCCC---SCSEEEC--------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGG
T ss_pred ECCCCCCccccC---hhHhhcc-------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cchh
Confidence 777765222211 0111111 11235679999999998 1112455667899999999999954332 2222
Q ss_pred cccCCcccEEEecCCCCcccc---cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhccc
Q 036097 319 KISSPSLKRLEIFKCTKLAAV---EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQ 395 (481)
Q Consensus 319 ~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~ 395 (481)
...+++|+.|++++|.....+ ....++|+.|.++++.........+. ++++|+.+++..+. ..+.++..+.+
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~----~~~~iP~~l~~ 299 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCV----NLSRLPSLIAQ 299 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCT----TCCCCCGGGGG
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCCC----chhhccHHHhh
Confidence 335689999999998765543 34578999999998665444333333 88999999998876 23445677777
Q ss_pred ceeeEEEEEEee
Q 036097 396 WSKVLNLLSECG 407 (481)
Q Consensus 396 L~~l~~L~i~~~ 407 (481)
+.++..+.+..+
T Consensus 300 L~~L~~l~l~~~ 311 (328)
T 4fcg_A 300 LPANCIILVPPH 311 (328)
T ss_dssp SCTTCEEECCGG
T ss_pred ccCceEEeCCHH
Confidence 777666776644
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.48 E-value=7.1e-14 Score=140.97 Aligned_cols=154 Identities=14% Similarity=0.127 Sum_probs=78.1
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
+++++|+++.+ . ...+| +..+++|++|++++|.+...+ ...+++|++|+++++.+.+- . +..+++|+
T Consensus 64 ~~L~~L~Ls~n--~--l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~ 130 (457)
T 3bz5_A 64 TGLTKLICTSN--N--ITTLD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLT 130 (457)
T ss_dssp TTCSEEECCSS--C--CSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCC--C--CTTCTTCC
T ss_pred CCCCEEEccCC--c--CCeEc--cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCee--c--CCCCCcCC
Confidence 56666666655 1 22233 445666666666666654432 44566666666666655431 1 45566666
Q ss_pred eeEeeeecCcceEeecCCCCCcEEEEccCCCCceEE-EecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhh
Q 036097 216 DLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVN-INALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVD 291 (481)
Q Consensus 216 ~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~ 291 (481)
+|++++|. +..+.+..+++|+.|++++|.....+. ..+++|+.|+++++.-.. ..+..+++|+.|+++ ++..
T Consensus 131 ~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~-- 206 (457)
T 3bz5_A 131 YLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITKL-- 206 (457)
T ss_dssp EEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSCC--
T ss_pred EEECCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCee--
Confidence 66666553 222344455666666666653222221 134556666665551111 114555555555554 2211
Q ss_pred HHhhhcCCcccEEEecc
Q 036097 292 ETLSYHITRLVVLECLG 308 (481)
Q Consensus 292 ~~~~~~~~~L~~L~L~~ 308 (481)
-+..+++|+.|++++
T Consensus 207 --~l~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 207 --DLNQNIQLTFLDCSS 221 (457)
T ss_dssp --CCTTCTTCSEEECCS
T ss_pred --ccccCCCCCEEECcC
Confidence 134455555555555
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.47 E-value=3.3e-14 Score=137.45 Aligned_cols=277 Identities=10% Similarity=0.020 Sum_probs=155.2
Q ss_pred CccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---eecCCCCCcEEE
Q 036097 164 TVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI---KLFGRSKLRDIK 240 (481)
Q Consensus 164 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---~i~~~~~L~~L~ 240 (481)
+++.++++++.+..+|.. -.++|+.|+++++.+..-. ...+..+++|++|++++|. +..+ .+..+++|+.|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE---ISPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSSCCSC---CCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccccCCC---CCCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEE
Confidence 455555555555443321 1245555555555443211 1123455555555555553 2222 233445666666
Q ss_pred EccCCCCceEE-EecCCccEEEEcCC-CCC-CceeccCCCCCcEEEEE---echh-hhHHhhhcCCcccEEEeccccccc
Q 036097 241 IKGGREAEEVN-INALNGHSITVVSP-LPS-GKINEVSCKNLKSLFLC---ITSV-VDETLSYHITRLVVLECLGLIVCF 313 (481)
Q Consensus 241 l~~~~~~~~~~-~~~p~L~~L~l~~~-~~~-~~~~~~~~~~L~~L~l~---~~~~-~~~~~~~~~~~L~~L~L~~~~~c~ 313 (481)
++++... .+. ...++|++|+++++ ... ....+..+++|+.|++. ++.. .....+..+ +|+.|++++|.+
T Consensus 109 L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l-- 184 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL-- 184 (332)
T ss_dssp CCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC--
T ss_pred CCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC--
Confidence 6555411 110 01167777777776 222 22346778888888876 3321 222333444 888888888432
Q ss_pred cccccccc-CCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHH
Q 036097 314 ELQNIKIS-SPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIE 388 (481)
Q Consensus 314 ~l~~l~~~-~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~ 388 (481)
+.++.. +++|++|+++++. +.. .....++|+.|.++++.+.......+. .+++|+.+++..+. +..
T Consensus 185 --~~l~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~-----l~~ 255 (332)
T 2ft3_A 185 --TGIPKDLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNK-----LSR 255 (332)
T ss_dssp --SSCCSSSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSC-----CCB
T ss_pred --CccCccccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCc-----Cee
Confidence 222221 3688888888864 332 233568899999988766544332332 78899999987654 112
Q ss_pred HHhhcccceeeEEEEEEeeceeeechhhhccCC--CCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 389 LIAKFHQWSKVLNLLSECGESVIVPKELRQILP--PPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 389 ~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
++..+..+.+|+.|+++.+....++........ ..+.+|+.|++..+.... ....+..+..+++|+.+.+
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~----~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY----WEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG----GGSCGGGGTTBCCSTTEEC
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc----cccCcccccccchhhhhhc
Confidence 344455666666699998876666643222211 124678999998876332 2234566788999999887
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.46 E-value=4.6e-13 Score=130.53 Aligned_cols=255 Identities=13% Similarity=0.021 Sum_probs=135.3
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-- 228 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-- 228 (481)
....+|..+. ++|++|++++|.+...+......+++|++|+++++.+.+-. ...+..+++|++|++++|.- ..+
T Consensus 42 ~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~~~~ 117 (353)
T 2z80_A 42 SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYL-SNLSS 117 (353)
T ss_dssp TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCC-SSCCH
T ss_pred Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcC-CcCCH
Confidence 4455665443 57888888888877666555667888888888888765411 12256678888888877742 222
Q ss_pred -eecCCCCCcEEEEccCC--CCce--EEEecCCccEEEEcCCC--CC-CceeccCCCCCcEEEEE---echhhhHHhhhc
Q 036097 229 -KLFGRSKLRDIKIKGGR--EAEE--VNINALNGHSITVVSPL--PS-GKINEVSCKNLKSLFLC---ITSVVDETLSYH 297 (481)
Q Consensus 229 -~i~~~~~L~~L~l~~~~--~~~~--~~~~~p~L~~L~l~~~~--~~-~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~ 297 (481)
.+..+++|+.|+++++. .+.. ....+++|+.|+++++. .. .+..+..+++|++|+++ ++. .....+..
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~ 196 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-YEPKSLKS 196 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTT
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-cCHHHHhc
Confidence 13445667777666654 1111 12234555555555441 11 12234444455555444 111 11222334
Q ss_pred CCcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhh--hccCCCc
Q 036097 298 ITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTAL--KLLETDL 371 (481)
Q Consensus 298 ~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l--~~~~~~L 371 (481)
+++|++|++++ +. +.. +....++|+.|.++++.+.......+ ....+.+
T Consensus 197 l~~L~~L~l~~------------------------n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l 251 (353)
T 2z80_A 197 IQNVSHLILHM------------------------KQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251 (353)
T ss_dssp CSEEEEEEEEC------------------------SC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred cccCCeecCCC------------------------Cc-cccchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence 44444444444 33 111 11123455555555443332111000 0134556
Q ss_pred cEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccch
Q 036097 372 NLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFK 439 (481)
Q Consensus 372 ~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 439 (481)
+.+.+....-....+..++..+.++.+|+.|+++++....+|+.+ +..+++|++|+++.+.-.+
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~----~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI----FDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCBCC
T ss_pred hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHH----HhcCCCCCEEEeeCCCccC
Confidence 666664443222234455555666666666999988777777542 3567899999999875333
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.46 E-value=1.7e-13 Score=142.30 Aligned_cols=83 Identities=11% Similarity=0.003 Sum_probs=43.2
Q ss_pred cccEEEecCCCCccccc--ccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEE
Q 036097 324 SLKRLEIFKCTKLAAVE--IETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLN 401 (481)
Q Consensus 324 ~L~~L~l~~c~~l~~~~--~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~ 401 (481)
+|+.|+++++.- ..+. ...++|+.|.++++.+.......+ ..+++|+.+++..+.-. .+..++..+.++.+|+.
T Consensus 332 ~L~~L~l~~n~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 332 NIKMLSISDTPF-IHMVCPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLK--NFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCSEEEEESSCC-CCCCCCSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCC--BTTHHHHTTTTCTTCCE
T ss_pred cceEEEccCCCc-ccccCccCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcC--CcccchhhhcCCCCCCE
Confidence 356666665442 2221 456778888877766554322222 26677777777554311 11123334444445455
Q ss_pred EEEEeecee
Q 036097 402 LLSECGESV 410 (481)
Q Consensus 402 L~i~~~~~~ 410 (481)
|+++.+...
T Consensus 408 L~l~~N~l~ 416 (562)
T 3a79_B 408 LDVSLNSLN 416 (562)
T ss_dssp EECTTSCCB
T ss_pred EECCCCcCC
Confidence 777755443
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.45 E-value=1.3e-13 Score=138.82 Aligned_cols=178 Identities=13% Similarity=0.037 Sum_probs=93.6
Q ss_pred CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097 163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK 242 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~ 242 (481)
++|++|++++|.+..+| ....+++|++|+++++.+.. + -...++|++|++++|.--.--.+..+++|+.|+++
T Consensus 131 ~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~--l---p~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKK--L---PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSC--C---CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcc--c---CCCcccccEEECcCCcCCcCccccCCCCCCEEECC
Confidence 46666666666665544 34556666777766665542 1 11234667777666631111134456777777777
Q ss_pred cCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEEechhhhHHhhhcCCcccEEEeccccccccccccccc
Q 036097 243 GGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKIS 321 (481)
Q Consensus 243 ~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~ 321 (481)
+|... .+....++|+.|+++++. ...+ .+..+++|+.|+++ ...+..+...+++|+.|++++|. ++.++..
T Consensus 204 ~N~l~-~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~--~N~l~~l~~~~~~L~~L~l~~N~----l~~l~~~ 275 (454)
T 1jl5_A 204 NNSLK-KLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYAD--NNLLKTLPDLPPSLEALNVRDNY----LTDLPEL 275 (454)
T ss_dssp SSCCS-SCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC--SSCCSSCCSCCTTCCEEECCSSC----CSCCCCC
T ss_pred CCcCC-cCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECC--CCcCCcccccccccCEEECCCCc----ccccCcc
Confidence 76511 122223577888887772 2222 46777888888765 11111122234677777777632 2223333
Q ss_pred CCcccEEEecCCCCcccccccCCCcceeEeccccc
Q 036097 322 SPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVV 356 (481)
Q Consensus 322 ~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~ 356 (481)
.++|+.|++++|. +..+....++|+.|.++++.+
T Consensus 276 ~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 276 PQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp CTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCC
T ss_pred cCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcC
Confidence 4566666666643 333222234555555555443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.44 E-value=2.7e-13 Score=129.31 Aligned_cols=225 Identities=15% Similarity=0.076 Sum_probs=155.6
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChH-HHHHHhcCCCccceeEeeeecCcceE-
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQ-VIENLVAGCPLIEDLIFEFCEGLKSI- 228 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~~p~Le~L~l~~~~~~~~l- 228 (481)
....+|..+. ++|++|++++|.+..++......+++|++|+++++.+... .....+..+++|++|++++|. +..+
T Consensus 18 ~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~ 94 (306)
T 2z66_A 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMS 94 (306)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEE
T ss_pred CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccCh
Confidence 4556666443 6899999999999877765567899999999999987641 111124468999999999885 2222
Q ss_pred -eecCCCCCcEEEEccCC--CCc--eEEEecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE---echhhhHHhhhcC
Q 036097 229 -KLFGRSKLRDIKIKGGR--EAE--EVNINALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHI 298 (481)
Q Consensus 229 -~i~~~~~L~~L~l~~~~--~~~--~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~ 298 (481)
.+..+++|+.|+++++. ... .....+++|+.|+++++. +..+..+..+++|+.|+++ +++..+...+..+
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 174 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence 35567999999999885 221 123357899999999883 2234457888999999987 5544456677889
Q ss_pred CcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccC-CCccE
Q 036097 299 TRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLE-TDLNL 373 (481)
Q Consensus 299 ~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~-~~L~~ 373 (481)
++|+.|++++|.+..........+++|+.|+++++. +.. .....++|+.|.++++.+.......+. .+ ++|+.
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~L~~ 252 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAF 252 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC-CCCTTCCE
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHH-hhhccCCE
Confidence 999999999943322112222346889999999865 333 223468999999998877654332222 44 48888
Q ss_pred EEEeeCh
Q 036097 374 YTINFDP 380 (481)
Q Consensus 374 l~l~~~~ 380 (481)
+++..+.
T Consensus 253 L~L~~N~ 259 (306)
T 2z66_A 253 LNLTQND 259 (306)
T ss_dssp EECTTCC
T ss_pred EEccCCC
Confidence 8885443
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=3.9e-13 Score=139.96 Aligned_cols=251 Identities=14% Similarity=0.060 Sum_probs=179.0
Q ss_pred CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097 163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK 242 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~ 242 (481)
.+++.|+++++.+..+|... .++|++|++++|.+.. + -..+++|++|++++|. +..+.. .+++|+.|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l---~~~L~~L~L~~N~l~~--l---p~~l~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCL---PAHITTLVIPDNNLTS--L---PALPPELRTLEVSGNQ-LTSLPV-LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCC---CTTCSEEEECSCCCSC--C---CCCCTTCCEEEECSCC-CSCCCC-CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhh---CCCCcEEEecCCCCCC--C---CCcCCCCCEEEcCCCc-CCcCCC-CCCCCCEEECc
Confidence 46899999999997766422 2899999999998853 1 1257999999999985 443333 46999999999
Q ss_pred cCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEEechhhhHHhhhcCCcccEEEeccccccccccccccc
Q 036097 243 GGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKIS 321 (481)
Q Consensus 243 ~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~ 321 (481)
+|. +..+....++|+.|+++++. ...+. .+++|++|+++ ...+..+...+++|+.|.+.+|. ++.++..
T Consensus 110 ~N~-l~~l~~~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls--~N~l~~l~~~~~~L~~L~L~~N~----l~~l~~~ 179 (622)
T 3g06_A 110 SNP-LTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVS--DNQLASLPALPSELCKLWAYNNQ----LTSLPML 179 (622)
T ss_dssp SCC-CCCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECC--SSCCSCCCCCCTTCCEEECCSSC----CSCCCCC
T ss_pred CCc-CCCCCCCCCCcCEEECCCCCCCcCCC---CCCCCCEEECc--CCcCCCcCCccCCCCEEECCCCC----CCCCccc
Confidence 986 11222267899999999882 22222 35899999976 22222233456889999999843 3344556
Q ss_pred CCcccEEEecCCCCcccccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEE
Q 036097 322 SPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLN 401 (481)
Q Consensus 322 ~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~ 401 (481)
+++|+.|++++|. +..++...++|+.|.+.++.+..... ..++|+.++++.+. +..++..+++|+ .
T Consensus 180 ~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~-----L~~lp~~l~~L~---~ 245 (622)
T 3g06_A 180 PSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNR-----LTSLPVLPSELK---E 245 (622)
T ss_dssp CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSC-----CSCCCCCCTTCC---E
T ss_pred CCCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCC-----CCCCCCEEEccCCc-----cCcCCCCCCcCc---E
Confidence 7899999999864 66666667899999999987775443 56889999997664 111234444444 4
Q ss_pred EEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 402 LLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 402 L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
|++++|....+|. .+++|+.|+++.+.-. .++..+.++|+|+.|.+
T Consensus 246 L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N~L~-------~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 246 LMVSGNRLTSLPM--------LPSGLLSLSVYRNQLT-------RLPESLIHLSSETTVNL 291 (622)
T ss_dssp EECCSSCCSCCCC--------CCTTCCEEECCSSCCC-------SCCGGGGGSCTTCEEEC
T ss_pred EECCCCCCCcCCc--------ccccCcEEeCCCCCCC-------cCCHHHhhccccCEEEe
Confidence 9999886666663 3578999999887532 23455788999999999
No 53
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=1.3e-13 Score=133.28 Aligned_cols=225 Identities=14% Similarity=0.102 Sum_probs=148.7
Q ss_pred HHHHHHHHhC-CeeEEEEEEeecCCcccccCCcccCC--CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHH
Q 036097 127 DRCVCYAIES-TVKELELHTILRGDRLYHLPQMVVCS--ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQV 203 (481)
Q Consensus 127 ~~~~~~~~~~-~l~~L~L~~~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 203 (481)
.+|-..+..+ .++.++++.+ ... +..+... ++++.|+++++.+...+. ....+++|++|+++++.+.+..
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~~--~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTGK--NLH----PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTTC--BCC----HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHhcCchhheeeccccc--cCC----HHHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHH
Confidence 3565555433 3777776654 111 2233344 889999999999866554 4567899999999999998777
Q ss_pred HHHHhcCCCccceeEeeeecCcce--EeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcE
Q 036097 204 IENLVAGCPLIEDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKS 281 (481)
Q Consensus 204 l~~l~~~~p~Le~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~ 281 (481)
+...+..|++|++|++++|.--.. ..+..+++|+.|++++|..+... ..+..+..+++|++
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----------------~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----------------ALQTLLSSCSRLDE 172 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----------------HHHHHHHHCTTCCE
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----------------HHHHHHhcCCCCCE
Confidence 888899999999999998852211 12344677777777776311110 01122344555555
Q ss_pred EEEE----echhhhHHhhhcCC-cccEEEeccccccc-cc-----ccccccCCcccEEEecCCCCccc----ccccCCCc
Q 036097 282 LFLC----ITSVVDETLSYHIT-RLVVLECLGLIVCF-EL-----QNIKISSPSLKRLEIFKCTKLAA----VEIETPNL 346 (481)
Q Consensus 282 L~l~----~~~~~~~~~~~~~~-~L~~L~L~~~~~c~-~l-----~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L 346 (481)
|+++ +++..+...+..++ +|+.|++++ |. .+ ......+++|+.|++++|..+.+ .....++|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~---~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSG---YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCS---CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCC---CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 5554 55555677788999 999999999 63 23 23334578999999999875443 22356899
Q ss_pred ceeEecccc-cCCcchhhhhccCCCccEEEEeeC
Q 036097 347 SKCKYNGGV-VPFSSSTALKLLETDLNLYTINFD 379 (481)
Q Consensus 347 ~~L~~~~~~-~~~~~~~~l~~~~~~L~~l~l~~~ 379 (481)
++|.++++. +.......+. .+++|+.+++..+
T Consensus 250 ~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~ 282 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI 282 (336)
T ss_dssp CEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS
T ss_pred CEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc
Confidence 999998873 3333222233 6888888888655
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.42 E-value=1e-13 Score=132.76 Aligned_cols=193 Identities=16% Similarity=0.090 Sum_probs=100.4
Q ss_pred CCeeEEEEEEeecCCc-ccccCCcccCCCCccEEEEcC-eeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 136 STVKELELHTILRGDR-LYHLPQMVVCSETVNVLDLFG-CILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~-~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
.++++|+++.+ ... ...+|..+..+++|++|+|++ +.+....+.....+++|++|+++++.+... +...+..+++
T Consensus 50 ~~l~~L~L~~~--~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGL--NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECC--CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTT
T ss_pred ceEEEEECCCC--CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCC
Confidence 46777777765 211 115677777778888888874 555444334556777888888877766421 1223556777
Q ss_pred cceeEeeeecCcce--EeecCCCCCcEEEEccCCCCceEE---EecC-CccEEEEcCC--CCCCceeccCCCCCcEEEEE
Q 036097 214 IEDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREAEEVN---INAL-NGHSITVVSP--LPSGKINEVSCKNLKSLFLC 285 (481)
Q Consensus 214 Le~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~~~~~---~~~p-~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~ 285 (481)
|++|++++|.-... -.+..+++|+.|+++++.....+. ...+ +|+.|+++++ .+..+..+..++ |+.|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 88887777642111 123445677777776664211111 1223 5666666655 222333344444 5555554
Q ss_pred ---echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCC
Q 036097 286 ---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCT 334 (481)
Q Consensus 286 ---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~ 334 (481)
+++ .....+..+++|+.|++++|.+...... ....++|++|++++|.
T Consensus 206 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 206 RNMLEG-DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp SSEEEE-CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred CCcccC-cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence 221 1233445555666666655332211111 1223455555555543
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.41 E-value=4.8e-13 Score=128.36 Aligned_cols=230 Identities=12% Similarity=0.098 Sum_probs=132.6
Q ss_pred CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEE
Q 036097 162 SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKI 241 (481)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l 241 (481)
+++|++|+|++|.+...++.....+++|++|+|++|.+.+.. . +..+++|++|++++|. +..+ ...++|+.|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~-l~~l--~~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQEL--LVGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSE-EEEE--EECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCc-cccc--cCCCCcCEEEC
Confidence 445666666666654443333445666666666666553311 0 4556666666666553 2222 12366666666
Q ss_pred ccCCCCceEEEecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccc
Q 036097 242 KGGREAEEVNINALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQ 316 (481)
Q Consensus 242 ~~~~~~~~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~ 316 (481)
+++..........++|+.|+++++. +..+..+..+++|+.|+++ ++......+...+++|+.|++++|.+-. +.
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~ 185 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK 185 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EE
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cc
Confidence 6665332233345677777777762 2234456777888888876 4433334445678889999998843211 11
Q ss_pred cccccCCcccEEEecCCCCcccc---cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhc
Q 036097 317 NIKISSPSLKRLEIFKCTKLAAV---EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKF 393 (481)
Q Consensus 317 ~l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l 393 (481)
. ....++|+.|++++|. +..+ ....++|+.|.++++.+.... ..+ ..+++|+.+++..+......+..++..+
T Consensus 186 ~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~-~~~-~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 186 G-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIE-KAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp C-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEEC-TTC-CCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred c-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchh-hHh-hcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 1 1236788999988864 3332 335688899988887665321 112 2678888888866653323444555555
Q ss_pred ccceeeEEEEEE
Q 036097 394 HQWSKVLNLLSE 405 (481)
Q Consensus 394 ~~L~~l~~L~i~ 405 (481)
+.++. |.+.
T Consensus 262 ~~L~~---l~l~ 270 (317)
T 3o53_A 262 QRVQT---VAKQ 270 (317)
T ss_dssp HHHHH---HHHH
T ss_pred ccceE---EECC
Confidence 55555 5554
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.39 E-value=9.3e-13 Score=133.93 Aligned_cols=226 Identities=12% Similarity=0.081 Sum_probs=147.2
Q ss_pred CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEE
Q 036097 162 SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKI 241 (481)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l 241 (481)
+++|++|+|++|.+...++.....+++|++|+|++|.+.+... +..+++|++|++++|. +..+. ..++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY-VQELL--VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCc-CCCCC--CCCCcCEEEC
Confidence 4578888888888766655556678888888888887654111 6678888888888773 33322 2378888888
Q ss_pred ccCCCCceEEEecCCccEEEEcCC--CCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccc
Q 036097 242 KGGREAEEVNINALNGHSITVVSP--LPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQ 316 (481)
Q Consensus 242 ~~~~~~~~~~~~~p~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~ 316 (481)
++|..........++|+.|+++++ .+..+..+..+++|+.|+++ +++.....+...+++|+.|++++|.+.. +.
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~ 185 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK 185 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EE
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-cc
Confidence 888633333345688899998888 33345577888999999887 4444444455578999999999844211 11
Q ss_pred cccccCCcccEEEecCCCCcccc---cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhc
Q 036097 317 NIKISSPSLKRLEIFKCTKLAAV---EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKF 393 (481)
Q Consensus 317 ~l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l 393 (481)
. ...+++|+.|+++++. +..+ ....++|+.|.++++.+..... .+ ..+++|+.+++..+......+..++..+
T Consensus 186 ~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~l-~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEK-AL-RFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp C-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECT-TC-CCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred c-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccch-hh-ccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 1 1236889999999865 3332 2356889999998876653221 11 2678888988866553323333444444
Q ss_pred cccee
Q 036097 394 HQWSK 398 (481)
Q Consensus 394 ~~L~~ 398 (481)
+.++.
T Consensus 262 ~~L~~ 266 (487)
T 3oja_A 262 QRVQT 266 (487)
T ss_dssp HHHHH
T ss_pred CCCcE
Confidence 44443
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.39 E-value=7.6e-13 Score=133.47 Aligned_cols=62 Identities=15% Similarity=0.013 Sum_probs=27.1
Q ss_pred cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097 160 VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC 222 (481)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~ 222 (481)
..+++|++|+|++|.+...++.....+++|++|+|++|.+.. .....+..+++|++|++++|
T Consensus 96 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSC
T ss_pred CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCC
Confidence 344555555555554444333333444555555555544432 01111334445555555444
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.38 E-value=1.5e-12 Score=126.94 Aligned_cols=238 Identities=12% Similarity=0.045 Sum_probs=162.4
Q ss_pred CCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
+++++|+++.+ ....++. .+..+++|++|++++|.+...++.....+++|++|+++++.+.. .....+..+++|
T Consensus 52 ~~L~~L~l~~n----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNN----RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTC
T ss_pred ccCcEEECCCC----cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccC
Confidence 58999998876 3345555 56789999999999999877766567789999999999998864 222346789999
Q ss_pred ceeEeeeecC--cce-EeecCCCCCcEEEEccCCCCceEE----EecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE
Q 036097 215 EDLIFEFCEG--LKS-IKLFGRSKLRDIKIKGGREAEEVN----INALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC 285 (481)
Q Consensus 215 e~L~l~~~~~--~~~-l~i~~~~~L~~L~l~~~~~~~~~~----~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~ 285 (481)
++|++++|.- +.. ..+..+++|+.|+++++.....+. ..+++|+.|+++++. +..+..+..+++|++|+++
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 9999998842 221 134567999999999985333332 256889999999882 2235678889999999998
Q ss_pred e-c-hhhhHHhhhcCCcccEEEecccccccc-cccc--cccCCcccEEEecCCCCccc--------ccccCCCcceeEec
Q 036097 286 I-T-SVVDETLSYHITRLVVLECLGLIVCFE-LQNI--KISSPSLKRLEIFKCTKLAA--------VEIETPNLSKCKYN 352 (481)
Q Consensus 286 ~-~-~~~~~~~~~~~~~L~~L~L~~~~~c~~-l~~l--~~~~~~L~~L~l~~c~~l~~--------~~~~~p~L~~L~~~ 352 (481)
- . ..........+++|+.|++++|.+... ...+ ....+.++.+++..+. +.+ .....++|+.|.++
T Consensus 207 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp CSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred CCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECC
Confidence 1 1 122233456799999999999543211 1111 1124567778887754 221 22356889999998
Q ss_pred ccccCCcchhhhhccCCCccEEEEeeCh
Q 036097 353 GGVVPFSSSTALKLLETDLNLYTINFDP 380 (481)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~L~~l~l~~~~ 380 (481)
++.+.......+ ..+++|+.+++..+.
T Consensus 286 ~N~l~~i~~~~~-~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 286 RNQLKSVPDGIF-DRLTSLQKIWLHTNP 312 (353)
T ss_dssp SSCCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred CCCCCccCHHHH-hcCCCCCEEEeeCCC
Confidence 876653322111 267888888886554
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.37 E-value=8.5e-13 Score=127.33 Aligned_cols=210 Identities=13% Similarity=0.067 Sum_probs=103.8
Q ss_pred CCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
++++.|+++.+ ....++. .+..+++|++|+|++|.+....+.....+++|++|+++++.+.. +. ....++|
T Consensus 52 ~~l~~L~L~~n----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~--~~~~~~L 123 (330)
T 1xku_A 52 PDTALLDLQNN----KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LP--EKMPKTL 123 (330)
T ss_dssp TTCCEEECCSS----CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CC--SSCCTTC
T ss_pred CCCeEEECCCC----cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cC--hhhcccc
Confidence 45666666654 2233433 44566777777777777665544455566777777777776542 10 0123567
Q ss_pred ceeEeeeecCcce--EeecCCCCCcEEEEccCCCC-----ceEEEecCCccEEEEcCC-CCCCceeccCCCCCcEEEEE-
Q 036097 215 EDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREA-----EEVNINALNGHSITVVSP-LPSGKINEVSCKNLKSLFLC- 285 (481)
Q Consensus 215 e~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~-----~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~- 285 (481)
++|++++|.--.. ..+..+++|+.|+++++..- ......+++|+.|+++++ ....+..+ .++|+.|+++
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~ 201 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG 201 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTT
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCC
Confidence 7777766632111 12344566666666665411 001123456666666655 11111111 2556666554
Q ss_pred --echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc---cccCCCcceeEecccccC
Q 036097 286 --ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV---EIETPNLSKCKYNGGVVP 357 (481)
Q Consensus 286 --~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~ 357 (481)
++. .....+..+++|+.|++++|.+..........+++|+.|++++|. +..+ ....++|+.|.++++.+.
T Consensus 202 n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 202 NKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp SCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred CcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCC
Confidence 111 112334556666666666632211111112234566666666653 2222 123455666666555444
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.35 E-value=6.9e-13 Score=126.99 Aligned_cols=239 Identities=12% Similarity=0.008 Sum_probs=158.7
Q ss_pred eeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcc
Q 036097 110 VEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSL 189 (481)
Q Consensus 110 l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L 189 (481)
++.+.+......+...+.. .....+++++|+++.+ ..-...+|..+..+++|++|+|++|.+....+.....+++|
T Consensus 52 l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~--n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGI--NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp EEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEE--TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred EEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCC--CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 7887777542221001111 1123478999999953 23445778888899999999999999874444466789999
Q ss_pred eEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--eecCCC-CCcEEEEccCCCCceE--EEecCCccEEEEcC
Q 036097 190 RKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--KLFGRS-KLRDIKIKGGREAEEV--NINALNGHSITVVS 264 (481)
Q Consensus 190 ~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--~i~~~~-~L~~L~l~~~~~~~~~--~~~~p~L~~L~l~~ 264 (481)
++|+++++.+... +...+..+++|++|++++|.--..+ .+..++ +|+.|+++++...... .+...+|+.|++++
T Consensus 128 ~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCS
T ss_pred CEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcC
Confidence 9999999987532 2223677999999999988632222 344555 9999999988511111 11122399999999
Q ss_pred C--CCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc
Q 036097 265 P--LPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV 339 (481)
Q Consensus 265 ~--~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~ 339 (481)
+ .+..+..+..+++|+.|+++ ++.. ...+..+++|+.|++++|.+...+......+++|+.|+++++.--..+
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCB--GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeee--cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 8 33456678899999999988 4322 122577899999999995543333343445789999999986522222
Q ss_pred c--ccCCCcceeEecccc
Q 036097 340 E--IETPNLSKCKYNGGV 355 (481)
Q Consensus 340 ~--~~~p~L~~L~~~~~~ 355 (481)
+ ...++|+.+.+.++.
T Consensus 285 p~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 285 PQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCSTTGGGSCGGGTCSSS
T ss_pred CCCccccccChHHhcCCC
Confidence 2 234556666665543
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.35 E-value=1.5e-12 Score=131.16 Aligned_cols=175 Identities=13% Similarity=0.042 Sum_probs=86.0
Q ss_pred CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097 163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK 242 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~ 242 (481)
++|++|++++|.+..++. ..++|++|+++++.+.. +.. +..+++|++|++++|. +..+... .++|+.|+++
T Consensus 111 ~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~-l~~lp~~-~~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNS-LKKLPDL-PPSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC-CSCCCCC-CTTCCEEECC
T ss_pred CCCcEEECCCCccCcccC----CCCCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCc-CcccCCC-cccccEEECc
Confidence 455555555554433221 11455555555555432 111 4455556666655553 2211111 1455566555
Q ss_pred cCC--CCceEEEecCCccEEEEcCCCC-CCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccc
Q 036097 243 GGR--EAEEVNINALNGHSITVVSPLP-SGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQ 316 (481)
Q Consensus 243 ~~~--~~~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~ 316 (481)
++. .+.. ...+++|+.|+++++.- ..+. ..++|+.|+++ ++ .+.. +..+++|+.|++++|. ++
T Consensus 182 ~n~l~~l~~-~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~n~l~--~lp~-~~~l~~L~~L~l~~N~----l~ 250 (454)
T 1jl5_A 182 NNQLEELPE-LQNLPFLTAIYADNNSLKKLPD---LPLSLESIVAGNNILE--ELPE-LQNLPFLTTIYADNNL----LK 250 (454)
T ss_dssp SSCCSSCCC-CTTCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCS--SCCC-CTTCTTCCEEECCSSC----CS
T ss_pred CCcCCcCcc-ccCCCCCCEEECCCCcCCcCCC---CcCcccEEECcCCcCC--cccc-cCCCCCCCEEECCCCc----CC
Confidence 554 1111 12345556666555521 1111 12356666654 22 1222 4566777777777732 22
Q ss_pred cccccCCcccEEEecCCCCcccccccCCCcceeEecccccCC
Q 036097 317 NIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPF 358 (481)
Q Consensus 317 ~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~~ 358 (481)
.++...++|+.|++++|. +..++...++|+.|.++++.+..
T Consensus 251 ~l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 251 TLPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSENIFSG 291 (454)
T ss_dssp SCCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSE
T ss_pred cccccccccCEEECCCCc-ccccCcccCcCCEEECcCCccCc
Confidence 233334677778877754 44454455778888887765543
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=130.90 Aligned_cols=217 Identities=12% Similarity=0.051 Sum_probs=107.5
Q ss_pred ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---
Q 036097 152 LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--- 228 (481)
Q Consensus 152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--- 228 (481)
...+|..+. ++++.|+|++|.+...+......+++|++|+|+++.+..-. ...+..+++|++|++++|. +..+
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~ 130 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNR-LTTIPNG 130 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSC-CSSCCTT
T ss_pred cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCc-CCeeCHh
Confidence 334444332 45666666666665554444555666666666666554311 1124456666666666552 2221
Q ss_pred eecCCCCCcEEEEccCCCCceE----EEecCCccEEEEcCCC--CC-CceeccCCCCCcEEEEE---echhhhHHhhhcC
Q 036097 229 KLFGRSKLRDIKIKGGREAEEV----NINALNGHSITVVSPL--PS-GKINEVSCKNLKSLFLC---ITSVVDETLSYHI 298 (481)
Q Consensus 229 ~i~~~~~L~~L~l~~~~~~~~~----~~~~p~L~~L~l~~~~--~~-~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~ 298 (481)
.+..+++|+.|+++++.. ..+ ...+++|+.|+++++. .. ....+..+++|+.|+++ ++ .+. .+..+
T Consensus 131 ~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--~~~-~~~~l 206 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIP-NLTPL 206 (440)
T ss_dssp TSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS--SCC-CCTTC
T ss_pred HhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc--ccc-ccCCC
Confidence 133446666666665541 111 1234566666666541 11 12235566666666655 21 111 23556
Q ss_pred CcccEEEecccccccccccccccCCcccEEEecCCCCcccc----cccCCCcceeEecccccCCcchhhhhccCCCccEE
Q 036097 299 TRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLY 374 (481)
Q Consensus 299 ~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l 374 (481)
++|+.|+|++|.+..........+++|+.|+++++. +..+ ....++|+.|.++++.+.......+. .+++|+.+
T Consensus 207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L 284 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT-PLHHLERI 284 (440)
T ss_dssp SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS-SCTTCCEE
T ss_pred cccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhc-cccCCCEE
Confidence 667777777632211111222234667777776643 3222 23456677777776655433322222 56677777
Q ss_pred EEee
Q 036097 375 TINF 378 (481)
Q Consensus 375 ~l~~ 378 (481)
++..
T Consensus 285 ~L~~ 288 (440)
T 3zyj_A 285 HLHH 288 (440)
T ss_dssp ECCS
T ss_pred EcCC
Confidence 7643
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=130.34 Aligned_cols=214 Identities=13% Similarity=0.043 Sum_probs=155.6
Q ss_pred CCeeEEEEEEeecCCcccccC-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLP-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
++++.|+|+.+ ....++ ..+..+++|++|+|++|.+..++......+++|++|+|++|.+..- ....+..+++|
T Consensus 64 ~~l~~L~L~~n----~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHEN----QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSC----CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSC
T ss_pred CCCcEEEccCC----cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccC
Confidence 67899998876 233333 4566799999999999998777655677899999999999987541 12236789999
Q ss_pred ceeEeeeecCcceE---eecCCCCCcEEEEccCCCCceEE----EecCCccEEEEcCCCCCCceeccCCCCCcEEEEE--
Q 036097 215 EDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGREAEEVN----INALNGHSITVVSPLPSGKINEVSCKNLKSLFLC-- 285 (481)
Q Consensus 215 e~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~~~~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~-- 285 (481)
++|++++|. +..+ .+..+++|+.|+++++..+..+. ..+++|+.|+++++.-.....+..+++|+.|+++
T Consensus 139 ~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 139 KELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp CEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred ceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence 999999885 3333 24557999999999877554443 2578999999999843333468899999999987
Q ss_pred -echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc----cccCCCcceeEecccccC
Q 036097 286 -ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVVP 357 (481)
Q Consensus 286 -~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~~ 357 (481)
++. .....+.++++|+.|++++|.+..........+++|+.|+++++. +..+ ....++|+.|.++++...
T Consensus 218 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 218 HLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCCcc
Confidence 222 223456789999999999954322222223346899999999964 4443 345689999999887653
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.32 E-value=2.1e-12 Score=130.25 Aligned_cols=220 Identities=16% Similarity=0.026 Sum_probs=155.5
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-- 228 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-- 228 (481)
....+|..+. +++++|+|++|.+...++.....+++|++|+|+++.+..-. ...+..+++|++|++++|. +..+
T Consensus 65 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~ 140 (452)
T 3zyi_A 65 GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNW-LTVIPS 140 (452)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CSBCCT
T ss_pred CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCc-CCccCh
Confidence 4456665443 68999999999998776667788999999999999886421 1236789999999999885 3222
Q ss_pred -eecCCCCCcEEEEccCCCCceE----EEecCCccEEEEcCCCC--C-CceeccCCCCCcEEEEE---echhhhHHhhhc
Q 036097 229 -KLFGRSKLRDIKIKGGREAEEV----NINALNGHSITVVSPLP--S-GKINEVSCKNLKSLFLC---ITSVVDETLSYH 297 (481)
Q Consensus 229 -~i~~~~~L~~L~l~~~~~~~~~----~~~~p~L~~L~l~~~~~--~-~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~ 297 (481)
.+..+++|+.|+++++.. ..+ ...+++|+.|+++++.. . ....+..+++|+.|+++ ++. + ..+..
T Consensus 141 ~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~-~~~~~ 216 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--M-PNLTP 216 (452)
T ss_dssp TTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--C-CCCTT
T ss_pred hhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--c-ccccc
Confidence 244579999999999862 222 23578999999998622 2 22357889999999987 322 1 23567
Q ss_pred CCcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCCCccE
Q 036097 298 ITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNL 373 (481)
Q Consensus 298 ~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~ 373 (481)
+++|+.|++++|.+..........+++|+.|+++++. +.. .....++|+.|.++++.+.......+ ..+++|+.
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~ 294 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLF-TPLRYLVE 294 (452)
T ss_dssp CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS-TTCTTCCE
T ss_pred cccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHh-ccccCCCE
Confidence 8999999999954322222333456899999999865 333 23456899999999987764433222 26789999
Q ss_pred EEEeeCh
Q 036097 374 YTINFDP 380 (481)
Q Consensus 374 l~l~~~~ 380 (481)
+++..+.
T Consensus 295 L~L~~Np 301 (452)
T 3zyi_A 295 LHLHHNP 301 (452)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 9985543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.31 E-value=1.4e-12 Score=125.02 Aligned_cols=233 Identities=14% Similarity=0.090 Sum_probs=137.4
Q ss_pred cCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEc
Q 036097 184 VKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVV 263 (481)
Q Consensus 184 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~ 263 (481)
..+++|++|+|+++.+.+-. ...+..+++|++|++++|.-.....+..+++|+.|++++|. +..+. ..++|+.|+++
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l~ 107 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQELL-VGPSIETLHAA 107 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE-EEEEE-ECTTCCEEECC
T ss_pred ccCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc-ccccc-CCCCcCEEECC
Confidence 35679999999999886532 23367899999999998864444457778999999999884 22222 34889999988
Q ss_pred CCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccc-cccccccCCcccEEEecCCCCcccc
Q 036097 264 SPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFE-LQNIKISSPSLKRLEIFKCTKLAAV 339 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~-l~~l~~~~~~L~~L~l~~c~~l~~~ 339 (481)
++.-.. .....+++|+.|+++ ++. .....+..+++|+.|++++|.+... ...+...+++|+.|++++|. +..+
T Consensus 108 ~n~l~~-~~~~~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 184 (317)
T 3o53_A 108 NNNISR-VSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184 (317)
T ss_dssp SSCCSE-EEECCCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred CCccCC-cCccccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccc
Confidence 873221 122346667777765 221 1112334566777777776322111 11112234566666666643 2221
Q ss_pred c--ccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhh
Q 036097 340 E--IETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELR 417 (481)
Q Consensus 340 ~--~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~ 417 (481)
. ...++|+.|.++++.+.... ..+..+.+|+.|+++.+....+|+.
T Consensus 185 ~~~~~l~~L~~L~Ls~N~l~~l~------------------------------~~~~~l~~L~~L~L~~N~l~~l~~~-- 232 (317)
T 3o53_A 185 KGQVVFAKLKTLDLSSNKLAFMG------------------------------PEFQSAAGVTWISLRNNKLVLIEKA-- 232 (317)
T ss_dssp ECCCCCTTCCEEECCSSCCCEEC------------------------------GGGGGGTTCSEEECTTSCCCEECTT--
T ss_pred ccccccccCCEEECCCCcCCcch------------------------------hhhcccCcccEEECcCCcccchhhH--
Confidence 1 12445555555544333211 1233344444488887766666654
Q ss_pred ccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097 418 QILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 418 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
+..+++|+.|+++.+.-.. ..++.++..+|+|+.|.+
T Consensus 233 ---~~~l~~L~~L~l~~N~~~~-----~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 233 ---LRFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp ---CCCCTTCCEEECTTCCCBH-----HHHHHHHHTCHHHHHHHH
T ss_pred ---hhcCCCCCEEEccCCCccC-----cCHHHHHhccccceEEEC
Confidence 5667889999998776432 234556666777776655
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.30 E-value=5e-12 Score=119.24 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=70.1
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-- 228 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-- 228 (481)
....+|..+ .++|++|+++++.+...+......+++|++|+++++.+.+-. ...+..+++|++|++++|..+..+
T Consensus 22 ~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 22 GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCH
Confidence 344555433 468899999998887776556677889999999888775421 123567888999998887544433
Q ss_pred -eecCCCCCcEEEEccCCCC---ceEEEecCCccEEEEcCC
Q 036097 229 -KLFGRSKLRDIKIKGGREA---EEVNINALNGHSITVVSP 265 (481)
Q Consensus 229 -~i~~~~~L~~L~l~~~~~~---~~~~~~~p~L~~L~l~~~ 265 (481)
.+..+++|+.|+++++... ......+++|++|+++++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence 2344567777777666411 111123455555555554
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.29 E-value=1.8e-12 Score=125.20 Aligned_cols=274 Identities=14% Similarity=0.013 Sum_probs=158.8
Q ss_pred CeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccce
Q 036097 137 TVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIED 216 (481)
Q Consensus 137 ~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 216 (481)
.++.++++.+ ....+|..+ .++|++|++++|.+...++.....+++|++|+++++.+..-. ...+..+++|++
T Consensus 34 ~l~~l~~~~~----~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDL----GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSS----CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCE
T ss_pred cCCEEECCCC----CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCE
Confidence 4566665543 344666654 367888999888887666556677888899988888775421 223567888899
Q ss_pred eEeeeecCcceEeecCCCCCcEEEEccCCC--C-ceEEEecCCccEEEEcCCCC----CCceeccCCCCCcEEEEE---e
Q 036097 217 LIFEFCEGLKSIKLFGRSKLRDIKIKGGRE--A-EEVNINALNGHSITVVSPLP----SGKINEVSCKNLKSLFLC---I 286 (481)
Q Consensus 217 L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~--~-~~~~~~~p~L~~L~l~~~~~----~~~~~~~~~~~L~~L~l~---~ 286 (481)
|++++|. +..+.....++|+.|+++++.. . ......+++|+.|+++++.- ..+..+..+ +|+.|+++ +
T Consensus 107 L~L~~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 107 LYISKNH-LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp EECCSSC-CCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred EECCCCc-CCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 9888774 2232222237888888888761 1 11223578888888888722 233344555 77777765 2
Q ss_pred chhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchh
Q 036097 287 TSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSST 362 (481)
Q Consensus 287 ~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~ 362 (481)
+. +.. ...++|+.|++++|.+..........+++|+.|+++++. +.. .....++|+.|.++++.+... ..
T Consensus 185 ~~--l~~--~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~ 258 (332)
T 2ft3_A 185 TG--IPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSRV-PA 258 (332)
T ss_dssp SS--CCS--SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCCBC-CT
T ss_pred Cc--cCc--cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCeec-Ch
Confidence 21 111 112678888888743322111222345778888888754 332 223567888888887665522 11
Q ss_pred hhhccCCCccEEEEeeChhhHHHHHHH-Hhhccc------ceeeEEEEEEeecee--eechhhhccCCCCCCCCceEEEE
Q 036097 363 ALKLLETDLNLYTINFDPQWYVKFIEL-IAKFHQ------WSKVLNLLSECGESV--IVPKELRQILPPPLSGVKHLNFS 433 (481)
Q Consensus 363 ~l~~~~~~L~~l~l~~~~~~~~~~~~~-~~~l~~------L~~l~~L~i~~~~~~--~~~~~~~~~~~~~l~~L~~L~l~ 433 (481)
.+ ..+++|+.+++..+.-. .+ ...+.. ...+..|.+.++... .+++ ..+..+.+|+.++++
T Consensus 259 ~l-~~l~~L~~L~l~~N~l~-----~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~----~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 259 GL-PDLKLLQVVYLHTNNIT-----KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP----ATFRCVTDRLAIQFG 328 (332)
T ss_dssp TG-GGCTTCCEEECCSSCCC-----BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG----GGGTTBCCSTTEEC-
T ss_pred hh-hcCccCCEEECCCCCCC-----ccChhHccccccccccccccceEeecCcccccccCc----ccccccchhhhhhcc
Confidence 12 26788888888654310 01 011111 223344888876533 2221 225557888888887
Q ss_pred ec
Q 036097 434 IS 435 (481)
Q Consensus 434 ~~ 435 (481)
.+
T Consensus 329 ~n 330 (332)
T 2ft3_A 329 NY 330 (332)
T ss_dssp --
T ss_pred cc
Confidence 65
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.27 E-value=1.5e-11 Score=117.20 Aligned_cols=232 Identities=13% Similarity=0.025 Sum_probs=131.1
Q ss_pred cEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcce----EeecCCCCCcEEEE
Q 036097 166 NVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKS----IKLFGRSKLRDIKI 241 (481)
Q Consensus 166 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~----l~i~~~~~L~~L~l 241 (481)
+.++.+++.+..+|. .-.++|++|+++++.+.+ .....+..+++|++|++++|.--.. ..+..+++|+.|++
T Consensus 10 ~~l~c~~~~l~~ip~---~~~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT---GIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCS---CCCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCC---CCCCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 467777777766653 223689999999998763 2223467899999999998852211 12334689999999
Q ss_pred ccCC--CCceEEEecCCccEEEEcCCC-CC--CceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccccc
Q 036097 242 KGGR--EAEEVNINALNGHSITVVSPL-PS--GKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCF 313 (481)
Q Consensus 242 ~~~~--~~~~~~~~~p~L~~L~l~~~~-~~--~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~ 313 (481)
+++. .+......+++|++|+++++. .. ....+..+++|+.|+++ +. ......+..+++|+.|++++|....
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCcccc
Confidence 8886 222223467788888888761 11 11346667777777765 11 1223344566777777777632211
Q ss_pred -ccccccccCCcccEEEecCCCCcccc----cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHH
Q 036097 314 -ELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIE 388 (481)
Q Consensus 314 -~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~ 388 (481)
.+......+++|+.|++++|. +..+ ....++|+.|.++++.+.....
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------- 216 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDT--------------------------- 216 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCS---------------------------
T ss_pred ccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccCh---------------------------
Confidence 112222334566666666653 2221 1234555555555544332211
Q ss_pred HHhhcccceeeEEEEEEeeceeeechhhhccCCCCC-CCCceEEEEecc
Q 036097 389 LIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPL-SGVKHLNFSISI 436 (481)
Q Consensus 389 ~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~ 436 (481)
..+..+.+|+.|+++.+.....+.. .+..+ ++|++|+++.+.
T Consensus 217 --~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 217 --FPYKCLNSLQVLDYSLNHIMTSKKQ----ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp --GGGTTCTTCCEEECTTSCCCBCSSS----SCCCCCTTCCEEECTTCC
T ss_pred --hhccCcccCCEeECCCCCCcccCHH----HHHhhhccCCEEEccCCC
Confidence 1123333444477776654332211 13344 489999998764
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.25 E-value=2.8e-12 Score=120.97 Aligned_cols=197 Identities=16% Similarity=0.075 Sum_probs=115.9
Q ss_pred hCCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEeccee-cChHHHHHHhcCCC
Q 036097 135 ESTVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVR-ASDQVIENLVAGCP 212 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p 212 (481)
.+++++|+++.+ ....++. .+..+++|++|++++|.+....+.....+++|++|+++++. +..- ....+..++
T Consensus 31 ~~~l~~L~l~~n----~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGN----RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLG 105 (285)
T ss_dssp CTTCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCT
T ss_pred CCCceEEEeeCC----cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCc
Confidence 357888888775 3334443 45678999999999998877655567788999999999986 5431 122366789
Q ss_pred ccceeEeeeecCcce--EeecCCCCCcEEEEccCCCC--c-eEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEEec
Q 036097 213 LIEDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREA--E-EVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCIT 287 (481)
Q Consensus 213 ~Le~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~--~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 287 (481)
+|++|++++|.--.. -.+..+++|+.|+++++..- . .....+++|+.|+++++.-..
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------ 167 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS------------------ 167 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE------------------
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc------------------
Confidence 999999998852211 12455799999999988511 1 111235666666666652110
Q ss_pred hhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc----cccCCCcceeEecccccC
Q 036097 288 SVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVVP 357 (481)
Q Consensus 288 ~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~~ 357 (481)
.....+..+++|+.|++++|.+..........+++|+.|+++++. +..+ ....++|+.|.++++.+.
T Consensus 168 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 168 --VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp --ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred --cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCcc
Confidence 011123345555555555532211111111224556666666543 2221 234566777777665443
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.22 E-value=9.2e-12 Score=130.79 Aligned_cols=83 Identities=14% Similarity=0.052 Sum_probs=53.8
Q ss_pred CCeeEEEEEEeecCCcccccCCc-ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLPQM-VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
+++++|+|+.+ ....+|.. +.++++|++|+|++|.+..+++.....+++|++|++++|.+....+...+..++.|
T Consensus 100 ~~L~~L~Ls~N----~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 175 (635)
T 4g8a_A 100 SHLSTLILTGN----PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175 (635)
T ss_dssp TTCCEEECTTC----CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred CCCCEEEccCC----cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence 56777777665 33455543 34577777777777777666654556777788888877766442233345667777
Q ss_pred ceeEeeee
Q 036097 215 EDLIFEFC 222 (481)
Q Consensus 215 e~L~l~~~ 222 (481)
++|++++|
T Consensus 176 ~~L~L~~N 183 (635)
T 4g8a_A 176 EHLDLSSN 183 (635)
T ss_dssp CEEECCSS
T ss_pred hhhcccCc
Confidence 77777765
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.21 E-value=1.7e-12 Score=128.10 Aligned_cols=88 Identities=14% Similarity=0.175 Sum_probs=40.8
Q ss_pred CCeeEEEEEEee-cCCcccccCCcccCCCCccEEEEcCeeccCCCCC---C-------CcCCCcceEEEecceecChH--
Q 036097 136 STVKELELHTIL-RGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGR---N-------SVKLPSLRKLRLAQVRASDQ-- 202 (481)
Q Consensus 136 ~~l~~L~L~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~---~-------~~~~~~L~~L~L~~~~~~~~-- 202 (481)
+++++|+++.+. .......++..+..+++|++|+|++|.+..+... . ...+++|++|+|++|.+.+.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 456666655431 0001111333344556666666666543222110 0 13455666666666655442
Q ss_pred -HHHHHhcCCCccceeEeeeec
Q 036097 203 -VIENLVAGCPLIEDLIFEFCE 223 (481)
Q Consensus 203 -~l~~l~~~~p~Le~L~l~~~~ 223 (481)
.+...+..+++|++|++++|.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHHHHHhCCCCCEEECcCCC
Confidence 233344556666666666553
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.21 E-value=1.3e-11 Score=125.50 Aligned_cols=204 Identities=17% Similarity=0.114 Sum_probs=145.1
Q ss_pred CCeeEEEEEEeecCCcccccC-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLP-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
++++.|+|+.+ ....++ ..+..+++|++|+|++|.+...++ ...+++|++|+|++|.+.+ +...++|
T Consensus 34 ~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~------l~~~~~L 101 (487)
T 3oja_A 34 WNVKELDLSGN----PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------LLVGPSI 101 (487)
T ss_dssp GGCCEEECCSS----CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE------EEECTTC
T ss_pred CCccEEEeeCC----cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC------CCCCCCc
Confidence 48999999886 223343 466789999999999998865543 6688999999999998754 2245899
Q ss_pred ceeEeeeecCcceEeecCCCCCcEEEEccCC--CCce-EEEecCCccEEEEcCCCC--CCceecc-CCCCCcEEEEE---
Q 036097 215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGR--EAEE-VNINALNGHSITVVSPLP--SGKINEV-SCKNLKSLFLC--- 285 (481)
Q Consensus 215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~--~~~~-~~~~~p~L~~L~l~~~~~--~~~~~~~-~~~~L~~L~l~--- 285 (481)
++|++++|. +..+....+++|+.|++++|. .... ....+++|+.|+++++.- ..+..+. .+++|+.|+++
T Consensus 102 ~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 102 ETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 999999885 334444456999999999987 2211 223578999999999832 2333444 78999999987
Q ss_pred echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccccc---ccCCCcceeEecccccC
Q 036097 286 ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVE---IETPNLSKCKYNGGVVP 357 (481)
Q Consensus 286 ~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~L~~~~~~~~ 357 (481)
+++. .....+++|+.|++++|.+...... ...+++|+.|+++++. +..++ ...++|+.|.++++.+.
T Consensus 181 l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 181 IYDV---KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEE---ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cccc---cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCc
Confidence 3222 1123589999999999554321112 2346899999999965 44333 34588999999998776
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.21 E-value=2.4e-12 Score=123.12 Aligned_cols=199 Identities=14% Similarity=0.001 Sum_probs=95.0
Q ss_pred CCCCccEEEEcCeeccCCCCCCC--cCCCcceEEEecceecCh--HHHHHHhc-CCCccceeEeeeecCcce--EeecCC
Q 036097 161 CSETVNVLDLFGCILLEFPGRNS--VKLPSLRKLRLAQVRASD--QVIENLVA-GCPLIEDLIFEFCEGLKS--IKLFGR 233 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~--~~l~~l~~-~~p~Le~L~l~~~~~~~~--l~i~~~ 233 (481)
.+++|++|+|++|.+....+... ..+++|++|+|+++.+.+ ..+..+.. ..++|++|++++|.-... -.+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 56778888888877764332232 567778888888777654 22222211 137777777777642111 123334
Q ss_pred CCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---ech--hhhHHhhhcCCcccEEEecc
Q 036097 234 SKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITS--VVDETLSYHITRLVVLECLG 308 (481)
Q Consensus 234 ~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~--~~~~~~~~~~~~L~~L~L~~ 308 (481)
++|+.|+++++........ .....+..+++|++|+++ ++. .....++..+++|+.|++++
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGL---------------ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp SSCCEEECCSCTTCHHHHH---------------HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred CCCCEEECCCCCcCcchHH---------------HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence 5555555555531110000 000011334444444443 221 11223344566666666666
Q ss_pred cccccccc-cccccCCcccEEEecCCCCcccccccC-CCcceeEecccccCCcchhhhhccCCCccEEEEee
Q 036097 309 LIVCFELQ-NIKISSPSLKRLEIFKCTKLAAVEIET-PNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINF 378 (481)
Q Consensus 309 ~~~c~~l~-~l~~~~~~L~~L~l~~c~~l~~~~~~~-p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~ 378 (481)
|.+..... ......++|+.|++++|. +..++... ++|+.|.++++.+..... + ..+++|+.+++..
T Consensus 238 N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~p~--~-~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 238 NSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRNPS--P-DELPQVGNLSLKG 305 (312)
T ss_dssp SCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSCCC--T-TTSCEEEEEECTT
T ss_pred CcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCChh--H-hhCCCCCEEeccC
Confidence 43222110 111123566666666643 33332222 466666666655543211 1 2556666666543
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.20 E-value=3.2e-11 Score=114.99 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=95.9
Q ss_pred hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
.+++++|++..+ ....++ .+..+++|++|++++|.+.+.+. ...+++|++|+++++.+.+- . .+..+++|
T Consensus 40 l~~L~~L~l~~~----~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGT----GVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--S-AIAGLQSI 109 (308)
T ss_dssp HHTCCEEECTTS----CCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--G-GGTTCTTC
T ss_pred cCCcCEEEeeCC----CccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--h-hhcCCCCC
Confidence 357888887665 233454 45678889999999888866653 66788888998888877552 1 26678888
Q ss_pred ceeEeeeecCcceEeecCCCCCcEEEEccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echh
Q 036097 215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSV 289 (481)
Q Consensus 215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~ 289 (481)
++|++++|.--....+..+++|+.|++++|. .... ...+++|+.|+++++.-.....+..+++|+.|+++ +++-
T Consensus 110 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp CEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred CEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcC
Confidence 8888887742111124556777777777765 1111 12446666666666521111115555555555554 2111
Q ss_pred hhHHhhhcCCcccEEEecc
Q 036097 290 VDETLSYHITRLVVLECLG 308 (481)
Q Consensus 290 ~~~~~~~~~~~L~~L~L~~ 308 (481)
.. +..+++|+.|++++
T Consensus 189 --~~-l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 189 --SP-LASLPNLIEVHLKN 204 (308)
T ss_dssp --GG-GGGCTTCCEEECTT
T ss_pred --hh-hcCCCCCCEEEccC
Confidence 11 34555555555555
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.19 E-value=2.1e-11 Score=113.99 Aligned_cols=180 Identities=17% Similarity=0.090 Sum_probs=94.3
Q ss_pred ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---
Q 036097 152 LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--- 228 (481)
Q Consensus 152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--- 228 (481)
...+|..+. +++++|+|+++.+...+......+++|++|+++++.+.. ....++..+++|++|++++|. +..+
T Consensus 28 l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 103 (270)
T 2o6q_A 28 LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK-LQALPIG 103 (270)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSC-CCCCCTT
T ss_pred CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCc-CCcCCHh
Confidence 344555433 568888888888776665556677888888888876643 112234567788888887764 2222
Q ss_pred eecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEE
Q 036097 229 KLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLE 305 (481)
Q Consensus 229 ~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~ 305 (481)
.+..+++|+.|+++++.. .......+..+++|++|+++ ++. .....+..+++|+.|+
T Consensus 104 ~~~~l~~L~~L~l~~n~l-------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQL-------------------KSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELR 163 (270)
T ss_dssp TTTTCSSCCEEECCSSCC-------------------CCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred HcccccCCCEEECCCCcc-------------------CeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeE
Confidence 122345555555555431 01111223444555555544 111 1112245566666666
Q ss_pred ecccccccccccccccCCcccEEEecCCCCcccc----cccCCCcceeEeccccc
Q 036097 306 CLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVV 356 (481)
Q Consensus 306 L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~ 356 (481)
+++|.+..........+++|+.|+++++. +..+ ....++|+.|.+.++..
T Consensus 164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCCe
Confidence 66632211111111224566777776653 3322 22356777777777554
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.18 E-value=7.4e-11 Score=112.49 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=100.4
Q ss_pred CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-eecCCCCCcEE
Q 036097 161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-KLFGRSKLRDI 239 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-~i~~~~~L~~L 239 (481)
.+++|++|++++|.+...+ ....+++|++|+++++.+.+-.. +..+++|++|++++|. +..+ .+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNP-LKNVSAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCc-CCCchhhcCCCCCCEE
Confidence 5689999999999887664 46679999999999998865221 7789999999999885 2222 34556888888
Q ss_pred EEccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccc
Q 036097 240 KIKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFE 314 (481)
Q Consensus 240 ~l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~ 314 (481)
++++|. .+.. ...+++|+.|+++++.-.....+..+++|+.|+++ +++ +.. +..+++|+.|++++|.+. .
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~-~ 187 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNKIS-D 187 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC-C
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCccC-c
Confidence 888775 2211 22456777777776622222225666666666655 221 111 455666666666663221 1
Q ss_pred cccccccCCcccEEEecCC
Q 036097 315 LQNIKISSPSLKRLEIFKC 333 (481)
Q Consensus 315 l~~l~~~~~~L~~L~l~~c 333 (481)
+.. ...+++|+.|++++|
T Consensus 188 ~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 188 ISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp CGG-GGGCTTCCEEECTTS
T ss_pred Chh-hcCCCCCCEEEccCC
Confidence 111 123455666666554
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.14 E-value=2.2e-11 Score=114.21 Aligned_cols=200 Identities=18% Similarity=0.085 Sum_probs=123.0
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-- 228 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-- 228 (481)
....+|..+. ++|++|++++|.+...+......+++|++|+++++.+..-. ...+..+++|++|++++|. +..+
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~ 93 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLAL 93 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCc-cCccCh
Confidence 3444555432 56888888888776665545667788888888887664311 1125567788888887764 2222
Q ss_pred -eecCCCCCcEEEEccCC--CCce-EEEecCCccEEEEcCCC-CC--CceeccCCCCCcEEEEE---echhhhHHhhhcC
Q 036097 229 -KLFGRSKLRDIKIKGGR--EAEE-VNINALNGHSITVVSPL-PS--GKINEVSCKNLKSLFLC---ITSVVDETLSYHI 298 (481)
Q Consensus 229 -~i~~~~~L~~L~l~~~~--~~~~-~~~~~p~L~~L~l~~~~-~~--~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~ 298 (481)
.+..+++|+.|+++++. .... ....+++|+.|+++++. .. .+..+..+++|+.|+++ ++.. ....+..+
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l 172 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVL 172 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHH
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-CHHHhhhh
Confidence 23456788888887775 2211 12356788888888872 22 35678888999999887 2221 11222333
Q ss_pred Cccc----EEEecccccccccccccccCCcccEEEecCCCCcccc----cccCCCcceeEecccccC
Q 036097 299 TRLV----VLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVVP 357 (481)
Q Consensus 299 ~~L~----~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~~ 357 (481)
++|+ .|++++|.+. .+........+|+.|+++++. +..+ ....++|+.|.++++.+.
T Consensus 173 ~~L~~l~l~L~ls~n~l~-~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp HTCTTCCEEEECCSSCCC-EECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhccccceeeecCCCccc-ccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCccc
Confidence 4444 7888884321 111112223489999999865 4443 345789999999887665
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.14 E-value=1.6e-10 Score=108.20 Aligned_cols=188 Identities=13% Similarity=0.025 Sum_probs=122.4
Q ss_pred CcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---eecCCCCCcEEEEccCCCCc---eEEEecCCccEE
Q 036097 187 PSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGREAE---EVNINALNGHSI 260 (481)
Q Consensus 187 ~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~~~~---~~~~~~p~L~~L 260 (481)
++|++|+++++.+.+-.. ..+..+++|++|++++|. +..+ .+..+++|+.|+++++.... .....+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCH-hHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 579999999998865221 136789999999999884 3333 24557999999999886211 112357899999
Q ss_pred EEcCCC--CCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccccccccCCccc----EEEec
Q 036097 261 TVVSPL--PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLK----RLEIF 331 (481)
Q Consensus 261 ~l~~~~--~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~----~L~l~ 331 (481)
+++++. ......+..+++|++|+++ ++...+...+..+++|+.|++++|.+...........++|+ .|+++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 999872 2233458899999999987 44434556778899999999998432111111111123444 78888
Q ss_pred CCCCcccc---cccCCCcceeEecccccCCcchhhhhccCCCccEEEEee
Q 036097 332 KCTKLAAV---EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINF 378 (481)
Q Consensus 332 ~c~~l~~~---~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~ 378 (481)
++. +..+ ....++|+.|.++++.+.......+ ..+++|+.+++..
T Consensus 186 ~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~ 233 (276)
T 2z62_A 186 LNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIF-DRLTSLQKIWLHT 233 (276)
T ss_dssp SSC-CCEECTTSSCSCCEEEEECCSSCCSCCCTTTT-TTCCSCCEEECCS
T ss_pred CCc-ccccCccccCCCcccEEECCCCceeecCHhHh-cccccccEEEccC
Confidence 754 3332 2234578888888876654433222 2567777777753
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.12 E-value=2.4e-10 Score=107.93 Aligned_cols=168 Identities=11% Similarity=-0.052 Sum_probs=86.5
Q ss_pred cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-eecCCCCCcE
Q 036097 160 VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-KLFGRSKLRD 238 (481)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-~i~~~~~L~~ 238 (481)
.+++++++++++++.+..+|.. -.++++.|+|+++.+..-. ...+..+++|++|++++|. +..+ ....+++|+.
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~---~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPD---LPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSC---CCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCC---CCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCE
Confidence 3556777777777777655432 1357777777777665311 1235567777777777664 2222 1234566667
Q ss_pred EEEccCC--CCceEEEecCCccEEEEcCCC-CC-CceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccc
Q 036097 239 IKIKGGR--EAEEVNINALNGHSITVVSPL-PS-GKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIV 311 (481)
Q Consensus 239 L~l~~~~--~~~~~~~~~p~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~ 311 (481)
|+++++. .+.......++|+.|+++++. .. .+..+..+++|+.|+++ ++ ......+..+++|+.|++++|++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcC
Confidence 7666664 111112245566666666651 11 22345556666666654 21 11122334556666666666332
Q ss_pred ccccccccccCCcccEEEecCC
Q 036097 312 CFELQNIKISSPSLKRLEIFKC 333 (481)
Q Consensus 312 c~~l~~l~~~~~~L~~L~l~~c 333 (481)
..--.......++|+.|+++++
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCHHHhcCcCCCCEEECCCC
Confidence 1111111122455566666553
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.10 E-value=8.4e-11 Score=109.99 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=45.6
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
+++++|.+..+ ....++ .+..+++|++|++++|.+...+ ....+++|++|+++++.+.+ .....+..+++|+
T Consensus 41 ~~L~~L~l~~~----~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 41 NSIDQIIANNS----DIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLK 112 (272)
T ss_dssp TTCCEEECTTS----CCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCC
T ss_pred cceeeeeeCCC----Cccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCc-cChhHhcCCcCCC
Confidence 56676666554 122222 3456677777777777665432 34466777777777766543 1112245566677
Q ss_pred eeEeeeec
Q 036097 216 DLIFEFCE 223 (481)
Q Consensus 216 ~L~l~~~~ 223 (481)
+|++++|.
T Consensus 113 ~L~L~~n~ 120 (272)
T 3rfs_A 113 ELVLVENQ 120 (272)
T ss_dssp EEECTTSC
T ss_pred EEECCCCc
Confidence 77766653
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.09 E-value=1.6e-10 Score=110.34 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=89.6
Q ss_pred HHHHHhCCeeEEEEEEeecCCcccccCCcc--cCCCCccEEEEcCeeccCCCCCCCcCC-----CcceEEEecceecChH
Q 036097 130 VCYAIESTVKELELHTILRGDRLYHLPQMV--VCSETVNVLDLFGCILLEFPGRNSVKL-----PSLRKLRLAQVRASDQ 202 (481)
Q Consensus 130 ~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~ 202 (481)
+.....+++++|+++.+ . -...+|..+ ..+++|++|+|++|.+...+ .....+ ++|++|+++++.+...
T Consensus 89 ~~~~~l~~L~~L~L~~n--~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~ 164 (312)
T 1wwl_A 89 LRVLGISGLQELTLENL--E-VTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNF 164 (312)
T ss_dssp HHHHTTSCCCEEEEEEE--B-CBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred HHhcCcCCccEEEccCC--c-ccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence 33344589999999997 2 223566665 67899999999999987663 233333 8999999999988542
Q ss_pred HHHHHhcCCCccceeEeeeecCcce------EeecCCCCCcEEEEccCCCC--ceE----EEecCCccEEEEcCC
Q 036097 203 VIENLVAGCPLIEDLIFEFCEGLKS------IKLFGRSKLRDIKIKGGREA--EEV----NINALNGHSITVVSP 265 (481)
Q Consensus 203 ~l~~l~~~~p~Le~L~l~~~~~~~~------l~i~~~~~L~~L~l~~~~~~--~~~----~~~~p~L~~L~l~~~ 265 (481)
.. ..+..+++|++|++++|..... +....+++|+.|++++|..- ..+ ...+++|+.|+++++
T Consensus 165 ~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 165 SC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp CT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred hH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 21 2367899999999999863322 12255688888888887521 111 113467777777666
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.08 E-value=8.7e-10 Score=100.88 Aligned_cols=90 Identities=13% Similarity=0.173 Sum_probs=57.1
Q ss_pred ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEeccee-cChHHHHHHhcCCCccceeEeeeecCcceEe-
Q 036097 152 LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVR-ASDQVIENLVAGCPLIEDLIFEFCEGLKSIK- 229 (481)
Q Consensus 152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~- 229 (481)
...+|. + .++|++|+++++.+..++......+++|++|+++++. +.. .....+..+++|++|++++|..++.+.
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 345555 2 2478888888888877665566678888888888885 543 111125677888888888744444432
Q ss_pred --ecCCCCCcEEEEccCC
Q 036097 230 --LFGRSKLRDIKIKGGR 245 (481)
Q Consensus 230 --i~~~~~L~~L~l~~~~ 245 (481)
+..+++|+.|+++++.
T Consensus 99 ~~f~~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTG 116 (239)
T ss_dssp TSEECCTTCCEEEEEEEC
T ss_pred HHhCCCCCCCEEeCCCCC
Confidence 3345666666666553
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.07 E-value=5.1e-11 Score=117.43 Aligned_cols=94 Identities=11% Similarity=0.115 Sum_probs=57.9
Q ss_pred ccccCCcccCCCCccEEEEcCeeccCCCC----CCCcCCCcceEEEecceecC---h------HHHHHHhcCCCccceeE
Q 036097 152 LYHLPQMVVCSETVNVLDLFGCILLEFPG----RNSVKLPSLRKLRLAQVRAS---D------QVIENLVAGCPLIEDLI 218 (481)
Q Consensus 152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~---~------~~l~~l~~~~p~Le~L~ 218 (481)
...++..+..+++|++|+|++|.+..... .....+++|++|+|+++.+. + ..+...+..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 34455556677888888888887743211 12346788888888876432 1 22333356788888888
Q ss_pred eeeecCcc----eE--eecCCCCCcEEEEccCC
Q 036097 219 FEFCEGLK----SI--KLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 219 l~~~~~~~----~l--~i~~~~~L~~L~l~~~~ 245 (481)
+++|.--. .+ .+..+++|+.|++++|.
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 88774221 11 23345777777777765
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.06 E-value=7.4e-11 Score=112.61 Aligned_cols=220 Identities=15% Similarity=0.129 Sum_probs=115.1
Q ss_pred eeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccccCCcc--cCCCCccEEEEcCeeccCCCC----CCC
Q 036097 110 VEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMV--VCSETVNVLDLFGCILLEFPG----RNS 183 (481)
Q Consensus 110 l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~----~~~ 183 (481)
++.+.+... ......+..........++++|+++.+ . -....|..+ ..+++|++|+|++|.+..... ...
T Consensus 66 l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n--~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 66 VRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDL--K-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESC--C-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred eeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCC--E-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 555555422 122344444445555567888888775 1 223444444 567788888888887754221 112
Q ss_pred cCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcce------EeecCCCCCcEEEEccCCC--CceE----E
Q 036097 184 VKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKS------IKLFGRSKLRDIKIKGGRE--AEEV----N 251 (481)
Q Consensus 184 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~------l~i~~~~~L~~L~l~~~~~--~~~~----~ 251 (481)
..+++|++|+|++|.+... ....+..+++|++|++++|..... ..+..+++|+.|++++|.. +... .
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 3577777777777766431 112345677777777777753221 1123456666666666641 1110 1
Q ss_pred EecCCccEEEEcCCC-CC-CceeccCCCCCcEEEEEechhhhHHhhhcCCcccEEEecccccccccccccc-cCCcccEE
Q 036097 252 INALNGHSITVVSPL-PS-GKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKI-SSPSLKRL 328 (481)
Q Consensus 252 ~~~p~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~-~~~~L~~L 328 (481)
...++|++|+++++. .. .+..+..+ ..+++|++|++++|.+. .++. .+++|+.|
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~-------------------~~~~~L~~L~Ls~N~l~----~lp~~~~~~L~~L 277 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRC-------------------MWSSALNSLNLSFAGLE----QVPKGLPAKLRVL 277 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSC-------------------CCCTTCCCEECCSSCCC----SCCSCCCSCCSCE
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhc-------------------cCcCcCCEEECCCCCCC----chhhhhcCCCCEE
Confidence 133555555555541 11 11112211 12256777777664322 1111 13677777
Q ss_pred EecCCCCccc--ccccCCCcceeEecccccCC
Q 036097 329 EIFKCTKLAA--VEIETPNLSKCKYNGGVVPF 358 (481)
Q Consensus 329 ~l~~c~~l~~--~~~~~p~L~~L~~~~~~~~~ 358 (481)
+++++. +.. .....|+|+.|.++++.+..
T Consensus 278 ~Ls~N~-l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 278 DLSSNR-LNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSCC-CCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred ECCCCc-CCCCchhhhCCCccEEECcCCCCCC
Confidence 777754 332 23456788888887776543
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.06 E-value=1.8e-10 Score=112.43 Aligned_cols=234 Identities=10% Similarity=0.024 Sum_probs=124.7
Q ss_pred CCCCccEEEEcCeeccCCCC----CCCcCCC-cceEEEecceecCh---HHHHHHhcCC-CccceeEeeeecCcceEe--
Q 036097 161 CSETVNVLDLFGCILLEFPG----RNSVKLP-SLRKLRLAQVRASD---QVIENLVAGC-PLIEDLIFEFCEGLKSIK-- 229 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~----~~~~~~~-~L~~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~l~~~~~~~~l~-- 229 (481)
..++|++|+|++|.+.+.+. .....++ +|++|+|++|.+++ ..+..++..+ ++|++|++++|. +....
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence 34558888888777755442 2233566 67777777776654 3344444443 777777777664 11110
Q ss_pred -----ecCC-CCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEEech---hhhHHhhhc-CC
Q 036097 230 -----LFGR-SKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITS---VVDETLSYH-IT 299 (481)
Q Consensus 230 -----i~~~-~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~-~~ 299 (481)
+..+ ++|+.|++++|. +++ ..+...+.. .+
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~----------------------------------------l~~~~~~~l~~~l~~~~~ 138 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND----------------------------------------FSSKSSSEFKQAFSNLPA 138 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC----------------------------------------GGGSCHHHHHHHHTTSCT
T ss_pred HHHHHHHhCCCCccEEECcCCc----------------------------------------CCcHHHHHHHHHHHhCCC
Confidence 1111 233333333321 222 223344455 46
Q ss_pred cccEEEeccccccc-ccccc---cccC-CcccEEEecCCCCccc--------ccccC-CCcceeEecccccCCcchh---
Q 036097 300 RLVVLECLGLIVCF-ELQNI---KISS-PSLKRLEIFKCTKLAA--------VEIET-PNLSKCKYNGGVVPFSSST--- 362 (481)
Q Consensus 300 ~L~~L~L~~~~~c~-~l~~l---~~~~-~~L~~L~l~~c~~l~~--------~~~~~-p~L~~L~~~~~~~~~~~~~--- 362 (481)
+|++|++++|.+.. +...+ .... ++|++|++++|. +.. ..... ++|++|.++++.+......
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~ 217 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH
Confidence 99999999954321 11111 1123 389999999975 332 11233 4899999999877653222
Q ss_pred -hhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechh-h--hccCCCCCCCCceEEEEecc
Q 036097 363 -ALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKE-L--RQILPPPLSGVKHLNFSISI 436 (481)
Q Consensus 363 -~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~-~--~~~~~~~l~~L~~L~l~~~~ 436 (481)
.+....++|+.++++.+.-.......+...+..++.|+.|+++.+....+.+. + .....+.+.+|+.|+++.+.
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 23323568888888665421111222333334444444588886652222211 1 12235566777777777654
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.04 E-value=1.8e-10 Score=107.59 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=83.6
Q ss_pred CCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
+++++|+++.+ ....++. .+..+++|++|+|++|.+..++......+++|++|+++++.+..- ....+..+++|
T Consensus 37 ~~l~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDLQSN----KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNL 111 (270)
T ss_dssp TTCSEEECCSS----CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSC
T ss_pred CCCCEEECcCC----CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCC
Confidence 57889988776 3345554 566799999999999998777765567899999999999987541 12336789999
Q ss_pred ceeEeeeecCcceE---eecCCCCCcEEEEccCCC--Cc-eEEEecCCccEEEEcCC
Q 036097 215 EDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGRE--AE-EVNINALNGHSITVVSP 265 (481)
Q Consensus 215 e~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~~--~~-~~~~~~p~L~~L~l~~~ 265 (481)
++|++++|.- ..+ .+..+++|+.|+++++.. +. .....+++|+.|+++++
T Consensus 112 ~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 112 AELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcc-CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 9999998742 222 234467777777777641 10 01113455555555554
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.03 E-value=2.2e-10 Score=104.88 Aligned_cols=189 Identities=12% Similarity=-0.002 Sum_probs=113.3
Q ss_pred CCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCee-ccCCCCCCCcCCCcceEEEecc-eecChHHHHHHhcCCC
Q 036097 136 STVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCI-LLEFPGRNSVKLPSLRKLRLAQ-VRASDQVIENLVAGCP 212 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~~p 212 (481)
.++++|++..+ ....+|. .+..+++|++|++++|. +..+++.....+++|++|++++ +.+..- ....+..++
T Consensus 31 ~~l~~L~l~~n----~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIET----HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELP 105 (239)
T ss_dssp TTCCEEEEESC----CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCT
T ss_pred CcccEEEEeCC----cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCC
Confidence 47899998876 3445665 45579999999999997 7667655667899999999998 666531 122366899
Q ss_pred ccceeEeeeecCcceEeecCCCCCc---EEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCc-EEEEE---
Q 036097 213 LIEDLIFEFCEGLKSIKLFGRSKLR---DIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLK-SLFLC--- 285 (481)
Q Consensus 213 ~Le~L~l~~~~~~~~l~i~~~~~L~---~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~-~L~l~--- 285 (481)
+|++|++++|.--.--.+..+++|+ .|+++++..+..+. ...+..+++|+ .|+++
T Consensus 106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~------------------~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP------------------VNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEEC------------------TTTTTTTBSSEEEEECCSCC
T ss_pred CCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcC------------------cccccchhcceeEEEcCCCC
Confidence 9999999998421111133445555 66666652221111 11244555555 55544
Q ss_pred echhhhHHhhhcCCcccEEEecccccccccccc----cccC-CcccEEEecCCCCcccccc-cCCCcceeEecc
Q 036097 286 ITSVVDETLSYHITRLVVLECLGLIVCFELQNI----KISS-PSLKRLEIFKCTKLAAVEI-ETPNLSKCKYNG 353 (481)
Q Consensus 286 ~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l----~~~~-~~L~~L~l~~c~~l~~~~~-~~p~L~~L~~~~ 353 (481)
++ ......+.. ++|+.|++++ +..++.+ ...+ ++|+.|+++++. +..++. ..++|+.|.+.+
T Consensus 168 l~-~i~~~~~~~-~~L~~L~L~~---n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 168 FT-SVQGYAFNG-TKLDAVYLNK---NKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARN 235 (239)
T ss_dssp CC-EECTTTTTT-CEEEEEECTT---CTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTT
T ss_pred Cc-ccCHhhcCC-CCCCEEEcCC---CCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccC
Confidence 21 111112223 6777777777 4333322 1224 677788887743 444332 356777777654
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.00 E-value=3.4e-10 Score=107.97 Aligned_cols=223 Identities=13% Similarity=0.007 Sum_probs=133.5
Q ss_pred CCeeEEEEEEeecCCcccccCCc--ccCCCCccEEEEcCeeccCCCCCCC--cCCCcceEEEecceecChH--HHH-HHh
Q 036097 136 STVKELELHTILRGDRLYHLPQM--VVCSETVNVLDLFGCILLEFPGRNS--VKLPSLRKLRLAQVRASDQ--VIE-NLV 208 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~--~~~~~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~--~l~-~l~ 208 (481)
..++.+.+... ......+... ...+++|++|++++|.+....+... ..+++|++|+|++|.+.+. .+. .-+
T Consensus 64 ~~l~~l~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAA--QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSC--CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCC--cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 35677776654 2222222111 1235679999999998876554444 6789999999999988651 111 223
Q ss_pred cCCCccceeEeeeecCcce--EeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE-
Q 036097 209 AGCPLIEDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC- 285 (481)
Q Consensus 209 ~~~p~Le~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~- 285 (481)
..+++|++|++++|.-... -.+..+++|+.|+++++....... ......+..+++|++|+++
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG---------------LMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH---------------HHTTSCTTSSCCCCSCBCCS
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh---------------hhHHHhhhcCCCCCEEECCC
Confidence 4788999999988853211 122344556666555553110000 0011223456667777665
Q ss_pred --ec--hhhhHHhhhcCCcccEEEeccccccccccccccc---CCcccEEEecCCCCccccccc-CCCcceeEecccccC
Q 036097 286 --IT--SVVDETLSYHITRLVVLECLGLIVCFELQNIKIS---SPSLKRLEIFKCTKLAAVEIE-TPNLSKCKYNGGVVP 357 (481)
Q Consensus 286 --~~--~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~-~p~L~~L~~~~~~~~ 357 (481)
++ ......++..+++|++|++++|.+.......... .++|++|++++|. +..++.. .++|+.|.++++.+.
T Consensus 207 N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 207 TGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLN 285 (310)
T ss_dssp SCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCC
T ss_pred CCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCC
Confidence 32 1222234678899999999996543321111122 2799999999865 4444332 379999999998776
Q ss_pred Cc-chhhhhccCCCccEEEEeeCh
Q 036097 358 FS-SSTALKLLETDLNLYTINFDP 380 (481)
Q Consensus 358 ~~-~~~~l~~~~~~L~~l~l~~~~ 380 (481)
.. .. ..+++|+.+++..+.
T Consensus 286 ~~~~~----~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 286 RAPQP----DELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCT----TSCCCCSCEECSSTT
T ss_pred CCchh----hhCCCccEEECcCCC
Confidence 52 22 478999999886543
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.00 E-value=2.9e-10 Score=107.31 Aligned_cols=186 Identities=14% Similarity=0.053 Sum_probs=121.3
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
++++++++... ....+|..+. ++++.|+|++|.+...++.....+++|++|+|+++.+..-.. ...+++|+
T Consensus 10 ~~l~~l~~~~~----~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~ 80 (290)
T 1p9a_G 10 ASHLEVNCDKR----NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLG 80 (290)
T ss_dssp TTCCEEECTTS----CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCC
T ss_pred CCccEEECCCC----CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCC
Confidence 35666665543 4456666553 688999999998866655566778999999999988765111 25788999
Q ss_pred eeEeeeecCcceE--eecCCCCCcEEEEccCC--CCc-eEEEecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE---
Q 036097 216 DLIFEFCEGLKSI--KLFGRSKLRDIKIKGGR--EAE-EVNINALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC--- 285 (481)
Q Consensus 216 ~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~--~~~-~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~--- 285 (481)
+|++++|. +..+ .+..+++|+.|+++++. .+. .....+++|+.|+++++. .-....+..+++|+.|+++
T Consensus 81 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99998874 2222 23456889999998886 111 222356889999999882 2233446788999999976
Q ss_pred echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCC
Q 036097 286 ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKC 333 (481)
Q Consensus 286 ~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c 333 (481)
++ ......+..+++|+.|++++|.+. .+.......++|+.|++.++
T Consensus 160 l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred CC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 32 122234577899999999995432 12221222345666666653
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.97 E-value=5e-10 Score=109.31 Aligned_cols=84 Identities=21% Similarity=0.169 Sum_probs=58.7
Q ss_pred CCeeEEEEEEeecCCcccccC-----CcccCCC-CccEEEEcCeeccCCCCCCCcC-----CCcceEEEecceecCh---
Q 036097 136 STVKELELHTILRGDRLYHLP-----QMVVCSE-TVNVLDLFGCILLEFPGRNSVK-----LPSLRKLRLAQVRASD--- 201 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~-----~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~-----~~~L~~L~L~~~~~~~--- 201 (481)
.++++|+++.+ . ....+ ..+..++ +|++|+|++|.+.+........ +++|++|+|++|.+++
T Consensus 22 ~~L~~L~Ls~n--~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 22 HGVTSLDLSLN--N--LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TTCCEEECTTS--C--GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCceEEEccCC--C--CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 45899988876 2 22222 3444667 8999999999886543222222 3899999999998865
Q ss_pred HHHHHHhcCC-CccceeEeeeec
Q 036097 202 QVIENLVAGC-PLIEDLIFEFCE 223 (481)
Q Consensus 202 ~~l~~l~~~~-p~Le~L~l~~~~ 223 (481)
..+...+..+ ++|++|++++|.
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHHHhCCCCccEEECcCCc
Confidence 4455556666 899999999885
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.97 E-value=1.5e-10 Score=108.27 Aligned_cols=182 Identities=14% Similarity=0.027 Sum_probs=112.5
Q ss_pred CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---eecCCCCCc
Q 036097 161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI---KLFGRSKLR 237 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---~i~~~~~L~ 237 (481)
.+++|+.|+++++.+...+ ....+++|++|+++++.+.+- . .+..+++|++|++++|. +..+ .+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred cccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCC
Confidence 4577888888887765443 355678888888888877541 1 35677888888888774 2222 134567888
Q ss_pred EEEEccCCCC---ceEEEecCCccEEEEcCCC-C-CCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccc
Q 036097 238 DIKIKGGREA---EEVNINALNGHSITVVSPL-P-SGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGL 309 (481)
Q Consensus 238 ~L~l~~~~~~---~~~~~~~p~L~~L~l~~~~-~-~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~ 309 (481)
.|++++|..- ......+++|+.|+++++. . ..+..+..+++|+.|+++ ++ ......+..+++|+.|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCC
Confidence 8888877511 1112246778888888772 2 223345777888888876 32 122334567888888888884
Q ss_pred ccccccccccccCCcccEEEecCCCCcccccccCCCcceeEecc
Q 036097 310 IVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNG 353 (481)
Q Consensus 310 ~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~ 353 (481)
.+..........+++|+.|++++++. .-.+|+|+.+....
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~----~~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPW----DCTCPGIRYLSEWI 231 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCB----CCCTTTTHHHHHHH
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCc----cccCcHHHHHHHHH
Confidence 43222222233467888888887652 23456677666544
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.94 E-value=1.1e-09 Score=103.34 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
++++.|++..+ ....++ .+..+++|++|++++|.+...++ ...+++|++|+++++.+.+ +.. +..+++|+
T Consensus 46 ~~L~~L~l~~~----~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~ 115 (291)
T 1h6t_A 46 NSIDQIIANNS----DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSS-LKDLKKLK 115 (291)
T ss_dssp HTCCEEECTTS----CCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCC
T ss_pred CcccEEEccCC----CcccCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--Chh-hccCCCCC
Confidence 56777766654 223333 25567777777777777755543 5567777777777776654 111 55677777
Q ss_pred eeEeeeecCcceEeecCCCCCcEEEEccCC
Q 036097 216 DLIFEFCEGLKSIKLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 216 ~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~ 245 (481)
+|++++|.--..-.+..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 116 SLSLEHNGISDINGLVHLPQLESLYLGNNK 145 (291)
T ss_dssp EEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCcCCCChhhcCCCCCCEEEccCCc
Confidence 777776632111123334555555555553
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.91 E-value=1.4e-09 Score=112.98 Aligned_cols=161 Identities=15% Similarity=0.112 Sum_probs=101.0
Q ss_pred hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
..+|+.|++..+ ....++ .+..+++|+.|+|++|.+...++ ...+++|+.|+|++|.+.+- . .+..+++|
T Consensus 42 L~~L~~L~l~~n----~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L 111 (605)
T 1m9s_A 42 LNSIDQIIANNS----DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--S-SLKDLKKL 111 (605)
T ss_dssp HTTCCCCBCTTC----CCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--T-TSTTCTTC
T ss_pred CCCCCEEECcCC----CCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--h-hhccCCCC
Confidence 367787777665 233444 46678888888888888766553 56788888888888877551 1 25678888
Q ss_pred ceeEeeeecCcceEeecCCCCCcEEEEccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echh
Q 036097 215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSV 289 (481)
Q Consensus 215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~ 289 (481)
++|++++|.--..-.+..+++|+.|++++|. .+ .....+++|+.|+++++.-.....+..+++|+.|+|+ +++
T Consensus 112 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~- 189 (605)
T 1m9s_A 112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD- 189 (605)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-
T ss_pred CEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC-
Confidence 8888887742221134456778888887775 22 1112456777777777622211126667777777765 222
Q ss_pred hhHHhhhcCCcccEEEeccc
Q 036097 290 VDETLSYHITRLVVLECLGL 309 (481)
Q Consensus 290 ~~~~~~~~~~~L~~L~L~~~ 309 (481)
+ ..+..+++|+.|+|++|
T Consensus 190 -l-~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 190 -L-RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp -C-GGGTTCTTCSEEECCSE
T ss_pred -C-hHHccCCCCCEEEccCC
Confidence 1 23456667777777663
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.90 E-value=1.9e-09 Score=101.71 Aligned_cols=163 Identities=15% Similarity=0.053 Sum_probs=111.8
Q ss_pred CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEE
Q 036097 161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIK 240 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~ 240 (481)
.+++|++|++++|.+...+ ....+++|++|+++++.+.+-.. +..+++|++|++++|.--..-.+..+++|+.|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCChhhccCCCCCEEE
Confidence 4678888999888876664 35668889999998888765221 678888999998887422111355678899998
Q ss_pred EccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccccccc
Q 036097 241 IKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFEL 315 (481)
Q Consensus 241 l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l 315 (481)
+++|. .+. ....+++|+.|+++++.-.....+..+++|+.|+++ +++. .. +..+++|+.|++++|.+.. +
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~i~~-l 193 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHISD-L 193 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCB-C
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCcCCC-C
Confidence 88886 221 122568888999888833333567888889998887 3332 12 6788899999998854321 2
Q ss_pred ccccccCCcccEEEecCCC
Q 036097 316 QNIKISSPSLKRLEIFKCT 334 (481)
Q Consensus 316 ~~l~~~~~~L~~L~l~~c~ 334 (481)
.. ...+++|+.|++++++
T Consensus 194 ~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 194 RA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GG-GTTCTTCSEEEEEEEE
T ss_pred hh-hccCCCCCEEECcCCc
Confidence 22 2346788899888754
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.89 E-value=1.7e-09 Score=95.76 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=54.6
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
++++.|+++.+ ....+| .+..+++|++|++++|.+...+ ....+++|++|+++++.+.+..+. .+..+++|+
T Consensus 44 ~~L~~L~l~~n----~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~ 115 (197)
T 4ezg_A 44 NSLTYITLANI----NVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLT 115 (197)
T ss_dssp HTCCEEEEESS----CCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCC
T ss_pred CCccEEeccCC----CccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccCh-hhcCCCCCC
Confidence 56777777665 222445 4556777777777777553332 344566777777776666432222 144566666
Q ss_pred eeEeeeecCcc--eEeecCCCCCcEEEEccC
Q 036097 216 DLIFEFCEGLK--SIKLFGRSKLRDIKIKGG 244 (481)
Q Consensus 216 ~L~l~~~~~~~--~l~i~~~~~L~~L~l~~~ 244 (481)
+|++++|.--. .-.+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 66666653221 112233444555554444
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.89 E-value=9.1e-10 Score=101.60 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=58.1
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-- 228 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-- 228 (481)
....+|..+. +++++|+|++|.+...++.....+++|++|+|+++.+.+- ....+..+++|++|++++|. +..+
T Consensus 25 ~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~ 100 (251)
T 3m19_A 25 SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ-LASLPL 100 (251)
T ss_dssp CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCT
T ss_pred CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc-ccccCh
Confidence 4455665443 5788888888888776655666788888888888877541 12235667888888887764 2221
Q ss_pred -eecCCCCCcEEEEccCC
Q 036097 229 -KLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 229 -~i~~~~~L~~L~l~~~~ 245 (481)
.+..+++|+.|+++++.
T Consensus 101 ~~~~~l~~L~~L~L~~N~ 118 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQ 118 (251)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred hHhcccCCCCEEEcCCCc
Confidence 12334566666665553
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.87 E-value=1.4e-09 Score=113.09 Aligned_cols=163 Identities=14% Similarity=0.052 Sum_probs=104.6
Q ss_pred CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEE
Q 036097 161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIK 240 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~ 240 (481)
.+++|+.|++++|.+..++ ....+++|+.|+|++|.+.+-.. +..+++|+.|+|++|.--..-.+..+++|+.|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEE
Confidence 4577888888888776554 35567888888888887755211 667888888888877422111345568888888
Q ss_pred EccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccccccc
Q 036097 241 IKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFEL 315 (481)
Q Consensus 241 l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l 315 (481)
+++|. .+.. ...+++|+.|+++++.-.....+..+++|+.|+|+ +.+. .. +..+++|+.|+|++|.+.. +
T Consensus 116 Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~i~~-l 190 (605)
T 1m9s_A 116 LEHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHISD-L 190 (605)
T ss_dssp CTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCB-C
T ss_pred ecCCCCCCCcc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCc--hh-hccCCCCCEEECcCCCCCC-C
Confidence 88776 2211 22567888888888733323567778888888876 3322 11 6677888888888743321 2
Q ss_pred ccccccCCcccEEEecCCC
Q 036097 316 QNIKISSPSLKRLEIFKCT 334 (481)
Q Consensus 316 ~~l~~~~~~L~~L~l~~c~ 334 (481)
.. ...+++|+.|++++|.
T Consensus 191 ~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 191 RA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp GG-GTTCTTCSEEECCSEE
T ss_pred hH-HccCCCCCEEEccCCc
Confidence 11 2335778888887754
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.86 E-value=3.7e-09 Score=110.85 Aligned_cols=193 Identities=12% Similarity=0.059 Sum_probs=103.2
Q ss_pred CCCCcEEEEccCCCCceE-----EEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccE
Q 036097 233 RSKLRDIKIKGGREAEEV-----NINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVV 303 (481)
Q Consensus 233 ~~~L~~L~l~~~~~~~~~-----~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~ 303 (481)
+++|+.|.++.+...... ....++|+.+++..+. ......+..+++|+.+++. .........+..+++++.
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence 455666655554311110 1134455555555441 1122345556666666654 222222234556677777
Q ss_pred EEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeC
Q 036097 304 LECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFD 379 (481)
Q Consensus 304 L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~ 379 (481)
++++.+.............+.|+.|+++++..... .....++|+.|.++++.+.......+. .+++|+.++++.+
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~-~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHN 528 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTS
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc-CCCCCCEEECCCC
Confidence 77776432222223333457788888887653332 334567888888888765543332222 6788888887554
Q ss_pred hhhHHHHHHH-HhhcccceeeEEEEEEeeceeeechhhhccCCCCC-CCCceEEEEec
Q 036097 380 PQWYVKFIEL-IAKFHQWSKVLNLLSECGESVIVPKELRQILPPPL-SGVKHLNFSIS 435 (481)
Q Consensus 380 ~~~~~~~~~~-~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~ 435 (481)
.- ..+ +..+.++++|+.|+++.|....+++. .+..+ ++|+.|+|+.+
T Consensus 529 ~l-----~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 529 NF-----FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ----ELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CC-----CBCCCGGGTTCTTCCEEECTTSCCCBCCSS----CTTCCCTTCCEEECTTC
T ss_pred cC-----CCCChhHHhCCCCCCEEECCCCcCCCCCHH----HHHhhhCcCCEEEeeCC
Confidence 30 111 13345555556688887765554422 13333 57888988764
No 99
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.84 E-value=1.5e-09 Score=73.61 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=33.9
Q ss_pred CCccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhc
Q 036097 13 NADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWC 52 (481)
Q Consensus 13 ~~d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~ 52 (481)
..+.++.||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 3567899999999999999999999999999999998544
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.84 E-value=2.5e-09 Score=94.67 Aligned_cols=140 Identities=13% Similarity=0.064 Sum_probs=62.8
Q ss_pred CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcc--eEeecCCCCCcEE
Q 036097 162 SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLK--SIKLFGRSKLRDI 239 (481)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~--~l~i~~~~~L~~L 239 (481)
+++|++|+++++.+..++ ....+++|++|+++++.+.+-. .+..+++|++|++++|.--. ...+..+++|+.|
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch---hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 344555555555544333 2334455555555555433211 13445555555555443111 1123334555555
Q ss_pred EEccCCCCc---eEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccc
Q 036097 240 KIKGGREAE---EVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGL 309 (481)
Q Consensus 240 ~l~~~~~~~---~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~ 309 (481)
++++|.... .....+++|+.|+++++. ......+..+++|+.|+++ +++ +. .+..+++|+.|++++|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECBC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeCc
Confidence 555543110 111134455555555542 2111234555555555544 222 11 3456777777777764
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.81 E-value=4.7e-09 Score=96.77 Aligned_cols=169 Identities=14% Similarity=0.060 Sum_probs=94.8
Q ss_pred CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---eecCCCCCcEE
Q 036097 163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI---KLFGRSKLRDI 239 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---~i~~~~~L~~L 239 (481)
++.++++++++.+..+|... .+.|++|+|+++.+..-. ...+..+++|++|++++|. +..+ .+..+++|+.|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEE
Confidence 46788999999887766422 268999999999886521 1236678999999999874 2222 13345677777
Q ss_pred EEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccc
Q 036097 240 KIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQ 316 (481)
Q Consensus 240 ~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~ 316 (481)
+++++..- . -....+..+++|++|+++ ++ ......+..+++|+.|++++|.+.....
T Consensus 89 ~L~~n~l~-~------------------~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 89 GLANNQLA-S------------------LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp ECTTSCCC-C------------------CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ECCCCccc-c------------------cChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCH
Confidence 77666411 0 011123344444444443 11 1111233556666666666633211111
Q ss_pred cccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccC
Q 036097 317 NIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVP 357 (481)
Q Consensus 317 ~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~ 357 (481)
.....+++|+.|+++++. +.. .....++|+.|.+.++.+.
T Consensus 149 ~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred HHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCcee
Confidence 112234667777776643 222 2234567777777776654
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.78 E-value=2.5e-08 Score=96.73 Aligned_cols=93 Identities=13% Similarity=0.164 Sum_probs=62.9
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe-
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK- 229 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~- 229 (481)
....+|..+ .+++++|+|++|.+..++.....++++|++|+|++|.+.+......+.+++.|.++.+..+..+..+.
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 455677655 36799999999998877765677889999999998876432112235677777776665554455442
Q ss_pred --ecCCCCCcEEEEccCC
Q 036097 230 --LFGRSKLRDIKIKGGR 245 (481)
Q Consensus 230 --i~~~~~L~~L~l~~~~ 245 (481)
+..+++|+.|+++++.
T Consensus 98 ~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp TSBCCCTTCCEEEEEEEC
T ss_pred hhhhhccccccccccccc
Confidence 3445777777777664
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.73 E-value=3e-08 Score=96.15 Aligned_cols=194 Identities=10% Similarity=0.061 Sum_probs=111.4
Q ss_pred CCeeEEEEEEeecCCcccccCCc-ccCCCCccEEEEcCeeccC-CCCCCCcCCCcceEE-EecceecChHHHHHHhcCCC
Q 036097 136 STVKELELHTILRGDRLYHLPQM-VVCSETVNVLDLFGCILLE-FPGRNSVKLPSLRKL-RLAQVRASDQVIENLVAGCP 212 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L-~L~~~~~~~~~l~~l~~~~p 212 (481)
+++++|+|+.+ ....+|.. +.++++|++|+|++|.+.. ++.....++++|+++ .+..+.+.. .....+..++
T Consensus 30 ~~l~~L~Ls~N----~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVLT----KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP 104 (350)
T ss_dssp TTCSEEEEESC----CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred CCCCEEEccCC----cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence 58999999887 45578775 4569999999999998754 444345678887664 444555532 1123367899
Q ss_pred ccceeEeeeecCc--ceEeecCCCCCcEEEEccCCCCceEEE----e-cCCccEEEEcCC-CCCCceeccCCCCCcEEEE
Q 036097 213 LIEDLIFEFCEGL--KSIKLFGRSKLRDIKIKGGREAEEVNI----N-ALNGHSITVVSP-LPSGKINEVSCKNLKSLFL 284 (481)
Q Consensus 213 ~Le~L~l~~~~~~--~~l~i~~~~~L~~L~l~~~~~~~~~~~----~-~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l 284 (481)
+|++|++++|.-- .........++..|.+.++..+..+.. . ...++.|+++++ ....+..+....+|+.+.+
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence 9999999998522 111112235667777766654443321 1 235677777766 2222222333444555554
Q ss_pred E---echhhhHHhhhcCCcccEEEecccccccccccccc-cCCcccEEEecCCCCccc
Q 036097 285 C---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKI-SSPSLKRLEIFKCTKLAA 338 (481)
Q Consensus 285 ~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~-~~~~L~~L~l~~c~~l~~ 338 (481)
. .........+.++++|+.|++++| .++.++. .+.+|++|.+.++.+++.
T Consensus 185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~N----~l~~lp~~~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 185 SDNNNLEELPNDVFHGASGPVILDISRT----RIHSLPSYGLENLKKLRARSTYNLKK 238 (350)
T ss_dssp TTCTTCCCCCTTTTTTEECCSEEECTTS----CCCCCCSSSCTTCCEEECTTCTTCCC
T ss_pred ccCCcccCCCHHHhccCcccchhhcCCC----CcCccChhhhccchHhhhccCCCcCc
Confidence 3 000111233456667777777763 2333322 245666666666655443
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.72 E-value=3.4e-08 Score=101.50 Aligned_cols=131 Identities=17% Similarity=0.153 Sum_probs=85.6
Q ss_pred HhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 134 IESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 134 ~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
...+++.|+++.+ ....+|..++ ++|++|+|++|.+..+| ..+++|++|++++|.++. +.. +. .+
T Consensus 57 ~~~~L~~L~Ls~n----~L~~lp~~l~--~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~--ip~-l~--~~ 121 (571)
T 3cvr_A 57 LINQFSELQLNRL----NLSSLPDNLP--PQITVLEITQNALISLP----ELPASLEYLDACDNRLST--LPE-LP--AS 121 (571)
T ss_dssp HHTTCSEEECCSS----CCSCCCSCCC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC-CC--TT
T ss_pred ccCCccEEEeCCC----CCCccCHhHc--CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC--cch-hh--cC
Confidence 3468999998876 3345777654 78999999999987665 457899999999998764 222 22 28
Q ss_pred cceeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEE
Q 036097 214 IEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLC 285 (481)
Q Consensus 214 Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~ 285 (481)
|++|++++|. +..+.- .+++|+.|++++|.. ..+....++|+.|+++++. ...+. +. ++|+.|+++
T Consensus 122 L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N~l-~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 122 LKHLDVDNNQ-LTMLPE-LPALLEYINADNNQL-TMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVS 188 (571)
T ss_dssp CCEEECCSSC-CSCCCC-CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECC
T ss_pred CCEEECCCCc-CCCCCC-cCccccEEeCCCCcc-CcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECc
Confidence 9999998874 222222 457888888887751 1121245677777777762 22222 22 556666554
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.66 E-value=1.8e-08 Score=93.58 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=31.6
Q ss_pred CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097 161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC 222 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~ 222 (481)
.+++|++|++++|.+...+ ....+++|++|+++++.+.+-.. +..+++|++|++++|
T Consensus 39 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSS
T ss_pred hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCC
Confidence 4556666666666554443 34455666666666665544111 455666666666655
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.64 E-value=6.1e-09 Score=96.70 Aligned_cols=160 Identities=10% Similarity=0.037 Sum_probs=102.3
Q ss_pred CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEE
Q 036097 162 SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKI 241 (481)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l 241 (481)
+.+++.++++++.+.+.+ ....+++|++|+++++.+.+- . -+..+++|++|++++|.--....+..+++|+.|++
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEEC
Confidence 456677777777765543 345789999999999988652 1 26789999999999884211112667799999999
Q ss_pred ccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccc
Q 036097 242 KGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQ 316 (481)
Q Consensus 242 ~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~ 316 (481)
+++. .+..... ++|+.|+++++.-.....+..+++|+.|+++ +++- ..+..+++|+.|++++|.+...
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCCCBC--
T ss_pred CCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcCcch--
Confidence 9886 2222222 8888888888733223356777777777766 3221 2355677777777777432211
Q ss_pred cccccCCcccEEEecCC
Q 036097 317 NIKISSPSLKRLEIFKC 333 (481)
Q Consensus 317 ~l~~~~~~L~~L~l~~c 333 (481)
.....+++|+.|+++++
T Consensus 166 ~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp TTSTTCCCCCEEEEEEE
T ss_pred HHhccCCCCCEEeCCCC
Confidence 11223456666666653
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.62 E-value=3.2e-08 Score=83.12 Aligned_cols=82 Identities=29% Similarity=0.289 Sum_probs=45.9
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
++++.|+++.+ ......+|..+..+++|++|++++|.+... .....+++|++|++++|.+.+. +...+..+++|+
T Consensus 17 ~~l~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNS--RSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTC--BCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCC
T ss_pred ccCeEEEccCC--cCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCC
Confidence 35666666554 222235565555666677777776666444 2344566666666666665432 233344566666
Q ss_pred eeEeeee
Q 036097 216 DLIFEFC 222 (481)
Q Consensus 216 ~L~l~~~ 222 (481)
+|++++|
T Consensus 92 ~L~ls~N 98 (149)
T 2je0_A 92 HLNLSGN 98 (149)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 6666555
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.61 E-value=1e-08 Score=88.10 Aligned_cols=104 Identities=23% Similarity=0.259 Sum_probs=74.9
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
+++++|+++.+ ......+|..+..+++|++|++++|.+... .....+++|++|++++|.+.+. +...+..+++|+
T Consensus 24 ~~L~~L~l~~n--~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNC--KSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSC--BCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCC
T ss_pred ccCCEEECCCC--CCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCC
Confidence 67999998886 333347888778899999999999988665 4566789999999999988652 344456789999
Q ss_pred eeEeeeecCcceE----eecCCCCCcEEEEccCC
Q 036097 216 DLIFEFCEGLKSI----KLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 216 ~L~l~~~~~~~~l----~i~~~~~L~~L~l~~~~ 245 (481)
+|++++|. +..+ .+..+++|+.|++++|.
T Consensus 99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 99 HLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp EEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred EEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc
Confidence 99999884 2221 23345666666666554
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.59 E-value=1.5e-07 Score=96.83 Aligned_cols=107 Identities=14% Similarity=0.022 Sum_probs=70.4
Q ss_pred CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097 163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK 242 (481)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~ 242 (481)
.+|+.|++++|.+..+|... +++|++|+|++|.++. +. ..+++|++|++++|. +..+.... .+|+.|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~ip~l~-~~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LSTLPELP-ASLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCCCC-TTCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCCcchhh-cCCCEEECC
Confidence 48999999999987765422 4889999999998863 22 457899999999884 22222111 388888888
Q ss_pred cCC--CCceEEEecCCccEEEEcCCCC-CCceeccCCCCCcEEEEE
Q 036097 243 GGR--EAEEVNINALNGHSITVVSPLP-SGKINEVSCKNLKSLFLC 285 (481)
Q Consensus 243 ~~~--~~~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~ 285 (481)
+|. .+.. .+++|+.|+++++.- ..+. .+++|+.|+++
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 168 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVR 168 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECC
Confidence 776 2222 567777777777621 1111 34555555544
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.56 E-value=1.9e-08 Score=89.76 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=53.6
Q ss_pred ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe--
Q 036097 152 LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK-- 229 (481)
Q Consensus 152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~-- 229 (481)
...+|..+ .++|++|+++++.+...+......+++|++|+++++.+.. .....+..+++|++|++++|. +..+.
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 94 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQ-LQSLPNG 94 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCc-CCccCHh
Confidence 34455433 3578888888888766655445677888888888877653 112234567788888887763 22211
Q ss_pred -ecCCCCCcEEEEccC
Q 036097 230 -LFGRSKLRDIKIKGG 244 (481)
Q Consensus 230 -i~~~~~L~~L~l~~~ 244 (481)
+..+++|+.|+++++
T Consensus 95 ~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 95 VFDKLTQLKELALNTN 110 (208)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HhcCccCCCEEEcCCC
Confidence 233455555555554
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.47 E-value=1e-07 Score=85.87 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=79.2
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe-
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK- 229 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~- 229 (481)
....+|..+. ++|+.|++++|.+..++......+++|++|+|+++.+..-. ...+..+++|++|++++|. +..+.
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~ 97 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNK-ITELPK 97 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSC-CCCCCT
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCc-CCccCH
Confidence 4455665443 67888888888887766556667888888888888775311 1235667888888888774 22221
Q ss_pred --ecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEE
Q 036097 230 --LFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVL 304 (481)
Q Consensus 230 --i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L 304 (481)
+..+++|+.|+++++.. .+..+..+..+++|+.|+++ ++. .....+..+++|+.|
T Consensus 98 ~~f~~l~~L~~L~L~~N~l-------------------~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANKI-------------------NCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTM 157 (220)
T ss_dssp TTTTTCTTCCEEECCSSCC-------------------CCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEE
T ss_pred hHccCCCCCCEEECCCCCC-------------------CEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEE
Confidence 22345555555555431 11112334555556655554 111 112234567778888
Q ss_pred Eecccc
Q 036097 305 ECLGLI 310 (481)
Q Consensus 305 ~L~~~~ 310 (481)
++++|.
T Consensus 158 ~L~~N~ 163 (220)
T 2v9t_B 158 HLAQNP 163 (220)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 887753
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.47 E-value=1.2e-07 Score=85.93 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=82.3
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe-
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK- 229 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~- 229 (481)
....+|..+. ++|++|+|++|.+...++.....+++|++|+|+++.+.. .....+..+++|++|++++|. +..+.
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~-l~~l~~ 105 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQ-LTVLPS 105 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCc-CCccCh
Confidence 4456665443 788999999988877665566678889999998887743 111235678888888888774 22221
Q ss_pred --ecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEE
Q 036097 230 --LFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVL 304 (481)
Q Consensus 230 --i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L 304 (481)
+..+++|+.|+++++. ....+..+..+++|+.|+++ ++. .....+..+++|+.|
T Consensus 106 ~~~~~l~~L~~L~Ls~N~--------------------l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNK--------------------LTELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHA 164 (229)
T ss_dssp TTTTTCTTCCEEECCSSC--------------------CCSCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred hHhCcchhhCeEeccCCc--------------------ccccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEE
Confidence 2334555555555543 11223334555666666654 221 112345677888888
Q ss_pred Eecccc
Q 036097 305 ECLGLI 310 (481)
Q Consensus 305 ~L~~~~ 310 (481)
++.+|.
T Consensus 165 ~l~~N~ 170 (229)
T 3e6j_A 165 YLFGNP 170 (229)
T ss_dssp ECTTSC
T ss_pred EeeCCC
Confidence 888754
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.46 E-value=6.5e-08 Score=83.03 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=38.4
Q ss_pred CCCccEEEEcCeecc--CCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeec
Q 036097 162 SETVNVLDLFGCILL--EFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE 223 (481)
Q Consensus 162 ~~~L~~L~L~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~ 223 (481)
.++|++|++++|.+. .++. ....+++|++|++++|.+.+- ..+..+++|++|++++|.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENR 82 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCC
T ss_pred cccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCc
Confidence 467888888888775 3432 345677788888877776442 335566777777776664
No 114
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=1.5e-07 Score=80.52 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=68.7
Q ss_pred cccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce-ecChHHHHHHhcC---CCccceeEeeeecCcceE
Q 036097 153 YHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV-RASDQVIENLVAG---CPLIEDLIFEFCEGLKSI 228 (481)
Q Consensus 153 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~---~p~Le~L~l~~~~~~~~l 228 (481)
..+|..-...-.|++|++++|.+.+.--....++++|++|+|++| .++|..+..+... |++|++|++++|..++.-
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 456654344567999999999875432223457899999999999 5888888887653 789999999999877653
Q ss_pred ---eecCCCCCcEEEEccCCC
Q 036097 229 ---KLFGRSKLRDIKIKGGRE 246 (481)
Q Consensus 229 ---~i~~~~~L~~L~l~~~~~ 246 (481)
.+..|++|++|++++|..
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTT
T ss_pred HHHHHhcCCCCCEEECCCCCC
Confidence 334568888888877753
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.45 E-value=7.5e-08 Score=85.84 Aligned_cols=104 Identities=21% Similarity=0.237 Sum_probs=73.7
Q ss_pred CCeeEEEEEEeecCCcccccCCc-ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLPQM-VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
+++++|+++.+ ....++.. +..+++|++|++++|.+...+......+++|++|+++++.+.. .....+..+++|
T Consensus 28 ~~l~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETN----SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEcCCC----ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCC
Confidence 57888888876 23355554 4578999999999999877765556789999999999998763 112235788999
Q ss_pred ceeEeeeecCcceE---eecCCCCCcEEEEccCC
Q 036097 215 EDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 215 e~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~ 245 (481)
++|++++|. +..+ .+..+++|+.|+++++.
T Consensus 103 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 103 KELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc
Confidence 999999874 2222 12345666666666653
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=6.1e-07 Score=86.02 Aligned_cols=32 Identities=25% Similarity=0.217 Sum_probs=14.8
Q ss_pred CCcccEEEecCCCCccc----ccccCCCcceeEeccc
Q 036097 322 SPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGG 354 (481)
Q Consensus 322 ~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~ 354 (481)
+++|+.+++.++. +.. ...++++|+++.+.++
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc
Confidence 4455555555421 222 2234556666665543
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.39 E-value=1.1e-07 Score=85.70 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=73.9
Q ss_pred CCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
.++++|++..+ ....++. .+..+++|++|+|++|.+....+.....+++|++|+|++|.+.. ....++..+++|
T Consensus 32 ~~l~~L~l~~n----~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQN----TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSS----CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred cCCCEEECCCC----cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCC
Confidence 57888888776 3344554 45568999999999999877766677789999999999998863 122335778999
Q ss_pred ceeEeeeecCcceE---eecCCCCCcEEEEccCC
Q 036097 215 EDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 215 e~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~ 245 (481)
++|++++|. +..+ .+..+++|+.|+++++.
T Consensus 107 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 107 QLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc
Confidence 999999884 2222 23344666666665553
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.37 E-value=1.3e-07 Score=85.14 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=40.8
Q ss_pred ccccCCcccCCCCccEEEEcCeeccCCCCC-CCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeec
Q 036097 152 LYHLPQMVVCSETVNVLDLFGCILLEFPGR-NSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE 223 (481)
Q Consensus 152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~ 223 (481)
...+|..+ .+.+++|+|++|.+...++. ....+++|++|+|+++.+..-. ...+..+++|++|++++|.
T Consensus 23 l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 23 LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred cccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCc
Confidence 34455543 24567777777777655332 2456777777777777664311 1124566777777777663
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.33 E-value=2.1e-07 Score=83.80 Aligned_cols=104 Identities=11% Similarity=0.106 Sum_probs=71.8
Q ss_pred CCeeEEEEEEeecCCccccc-C-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 136 STVKELELHTILRGDRLYHL-P-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l-~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
..+++|+++.+ ....+ + ..+..+++|++|+|++|.+..+++.....+++|++|+|++|.+..- ....+..+++
T Consensus 32 ~~~~~L~L~~N----~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 106 (220)
T 2v70_A 32 QYTAELRLNNN----EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLES 106 (220)
T ss_dssp TTCSEEECCSS----CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSS
T ss_pred CCCCEEEcCCC----cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcC
Confidence 45778887776 23344 2 3356799999999999999877766677899999999999988541 1223677899
Q ss_pred cceeEeeeecCcc--eEeecCCCCCcEEEEccC
Q 036097 214 IEDLIFEFCEGLK--SIKLFGRSKLRDIKIKGG 244 (481)
Q Consensus 214 Le~L~l~~~~~~~--~l~i~~~~~L~~L~l~~~ 244 (481)
|++|++++|.--. .-.+..+++|+.|+++++
T Consensus 107 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred CCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence 9999999875211 112334455555555554
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.33 E-value=2.6e-07 Score=83.69 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=74.8
Q ss_pred CCeeEEEEEEeecCCccccc-CCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHL-PQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
++++.|+++.+ ....+ |..+..+++|++|+|++|.+..++......+++|++|+|++|.+.. .....+..+++|
T Consensus 40 ~~L~~L~Ls~n----~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDN----QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCCEEEcCCC----ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhh
Confidence 68999998876 23334 4556678999999999999977776556789999999999998864 112335679999
Q ss_pred ceeEeeeecCcceE--eecCCCCCcEEEEccCC
Q 036097 215 EDLIFEFCEGLKSI--KLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 215 e~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~ 245 (481)
++|++++|. +..+ .+..+++|+.|+++++.
T Consensus 115 ~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 115 KELFMCCNK-LTELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp CEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC
T ss_pred CeEeccCCc-ccccCcccccCCCCCEEECCCCc
Confidence 999999885 2222 22344666666666553
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.30 E-value=2.1e-07 Score=90.56 Aligned_cols=155 Identities=13% Similarity=0.028 Sum_probs=83.3
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCc-CCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSV-KLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI- 228 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l- 228 (481)
....+|..+. +.++.|+|++|.+...+..... .+++|++|+|++|.+..-. ...+..+++|++|++++|. +..+
T Consensus 29 ~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~ 104 (361)
T 2xot_A 29 QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLD 104 (361)
T ss_dssp CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCC
Confidence 3445555432 4577888888877666544444 6778888888877765311 1125567778888887764 3332
Q ss_pred --eecCCCCCcEEEEccCCCCc---eEEEecCCccEEEEcCC-CCCCcee-c---cCCCCCcEEEEE---echhhhHHhh
Q 036097 229 --KLFGRSKLRDIKIKGGREAE---EVNINALNGHSITVVSP-LPSGKIN-E---VSCKNLKSLFLC---ITSVVDETLS 295 (481)
Q Consensus 229 --~i~~~~~L~~L~l~~~~~~~---~~~~~~p~L~~L~l~~~-~~~~~~~-~---~~~~~L~~L~l~---~~~~~~~~~~ 295 (481)
.+..+++|+.|+++++.... .....+++|+.|+++++ ....+.. + ..+++|+.|+++ ++. .....+
T Consensus 105 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~ 183 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDL 183 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC-CCHHHH
T ss_pred HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHh
Confidence 13345777777777664111 11123566677776666 2222221 2 446666666655 221 111233
Q ss_pred hcCCc--ccEEEecccc
Q 036097 296 YHITR--LVVLECLGLI 310 (481)
Q Consensus 296 ~~~~~--L~~L~L~~~~ 310 (481)
..+++ |+.|++.+|.
T Consensus 184 ~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 184 QKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHSCHHHHTTEECCSSC
T ss_pred hhccHhhcceEEecCCC
Confidence 44444 3566666643
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.26 E-value=1.8e-07 Score=90.96 Aligned_cols=144 Identities=16% Similarity=0.069 Sum_probs=102.8
Q ss_pred CCeeEEEEEEeecCCcccccCCccc--CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVV--CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
..++.|+|+.+ ....++...+ .+++|++|+|++|.+..+++.....+++|++|+|++|.+..- ....+..+++
T Consensus 39 ~~l~~L~Ls~N----~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHN----NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSS----CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTT
T ss_pred CCCCEEECCCC----CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcC
Confidence 46788888876 3445555444 789999999999999877766677899999999999987541 1223678899
Q ss_pred cceeEeeeecCcceE---eecCCCCCcEEEEccCC--CCc-eEE---EecCCccEEEEcCCC-CC-CceeccCCCC--Cc
Q 036097 214 IEDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGR--EAE-EVN---INALNGHSITVVSPL-PS-GKINEVSCKN--LK 280 (481)
Q Consensus 214 Le~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~--~~~-~~~---~~~p~L~~L~l~~~~-~~-~~~~~~~~~~--L~ 280 (481)
|++|++++|. +..+ .+..+++|+.|+++++. .+. .+. ..+++|+.|+++++. .. ....+..++. ++
T Consensus 114 L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 114 LEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192 (361)
T ss_dssp CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred CCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence 9999999885 3332 34567999999999986 211 111 357999999999982 22 2234566666 37
Q ss_pred EEEEE
Q 036097 281 SLFLC 285 (481)
Q Consensus 281 ~L~l~ 285 (481)
.|++.
T Consensus 193 ~l~l~ 197 (361)
T 2xot_A 193 GLYLH 197 (361)
T ss_dssp TEECC
T ss_pred eEEec
Confidence 77776
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.22 E-value=4.2e-07 Score=78.59 Aligned_cols=59 Identities=12% Similarity=0.043 Sum_probs=34.8
Q ss_pred cCCCCccEEEEcCeeccCCCCCCCcC-CCcceEEEecceecChHHHHHHhcCCCccceeEeeeec
Q 036097 160 VCSETVNVLDLFGCILLEFPGRNSVK-LPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE 223 (481)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~ 223 (481)
..+.+|+.|++++|.+..++ .... .++|+.|++++|.+.+- ..+..+++|++|++++|.
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC
T ss_pred CCcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc
Confidence 45667777777777765443 2223 34777777777766431 224556666666666653
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.19 E-value=5.3e-08 Score=86.16 Aligned_cols=65 Identities=20% Similarity=0.207 Sum_probs=37.1
Q ss_pred ccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097 154 HLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC 222 (481)
Q Consensus 154 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~ 222 (481)
.+|..+..+++|++|++++|.+..++ ....+++|++|++++|.+.. +...+..+++|++|++++|
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN 103 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC
Confidence 33335555666777777776665543 44456666777776666542 2222334466666666665
No 125
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=9.7e-07 Score=85.47 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=35.2
Q ss_pred HHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEccCCCCc----eEE-EecCCccEEEEc
Q 036097 203 VIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAE----EVN-INALNGHSITVV 263 (481)
Q Consensus 203 ~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~----~~~-~~~p~L~~L~l~ 263 (481)
.+..++..+|+|++|.++++.++....+. +++|++|.+..|.... .+. ..+|+|+.|+++
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 35566788999999999887443222222 3777777776554111 111 135666666654
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=1.6e-06 Score=83.08 Aligned_cols=229 Identities=11% Similarity=0.054 Sum_probs=123.2
Q ss_pred eeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecC-------Cc---------ccccCCccc-C--------CCC
Q 036097 110 VEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRG-------DR---------LYHLPQMVV-C--------SET 164 (481)
Q Consensus 110 l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~-------~~---------~~~l~~~~~-~--------~~~ 164 (481)
++.+.+.... ....+ .++... .++++.|+|+.+.-. .. ...+|...| . |++
T Consensus 27 l~~L~l~g~i--~~~~~-~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 27 ITHLTLTGKL--NAEDF-RHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp CSEEEEEEEE--CHHHH-HHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred eeEEEEeccc--cHHHH-HHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 6777776431 12222 222221 468999999876211 00 003344333 4 788
Q ss_pred ccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeec------CcceEeecCCCCCc-
Q 036097 165 VNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE------GLKSIKLFGRSKLR- 237 (481)
Q Consensus 165 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~------~~~~l~i~~~~~L~- 237 (481)
|+.|+|.. .+..++......|++|+++++..+.+.. .....+..|..+..+...... .+....+..|.+|+
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 88888888 6656666667778888888888775432 001123456555555433210 01111111122332
Q ss_pred -------------------------EEEEccCCC---CceEEEecCCccEEEEcCC-CCC-CceeccCCCCCcEEEEEec
Q 036097 238 -------------------------DIKIKGGRE---AEEVNINALNGHSITVVSP-LPS-GKINEVSCKNLKSLFLCIT 287 (481)
Q Consensus 238 -------------------------~L~l~~~~~---~~~~~~~~p~L~~L~l~~~-~~~-~~~~~~~~~~L~~L~l~~~ 287 (481)
.+.+.+... ...+...+++|++++++++ ... ....+.+|++|+.+.+.-+
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence 333222110 0000013788999998875 222 3346888999999987611
Q ss_pred hh-hhHHhhhcCCccc-EEEecccccccccccc----cccCCcccEEEecCCCCccc----ccccCCCcceeE
Q 036097 288 SV-VDETLSYHITRLV-VLECLGLIVCFELQNI----KISSPSLKRLEIFKCTKLAA----VEIETPNLSKCK 350 (481)
Q Consensus 288 ~~-~~~~~~~~~~~L~-~L~L~~~~~c~~l~~l----~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~ 350 (481)
-. .-...+.+|++|+ .+.+.+ +++.+ -..|++|+.+++.+. .+.. ...++++|+++.
T Consensus 261 i~~I~~~aF~~~~~L~~~l~l~~-----~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 261 LKTIGQRVFSNCGRLAGTLELPA-----SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEEECT-----TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred cceehHHHhhCChhccEEEEEcc-----cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 11 1123467889999 999876 23322 234688999998653 3443 345678888875
No 127
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=1.6e-06 Score=74.02 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=42.3
Q ss_pred CccEEEEcCCC--CCCceeccCCCCCcEEEEE----echhhhHHhhhc---CCcccEEEeccccccccccccc----ccC
Q 036097 256 NGHSITVVSPL--PSGKINEVSCKNLKSLFLC----ITSVVDETLSYH---ITRLVVLECLGLIVCFELQNIK----ISS 322 (481)
Q Consensus 256 ~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~----~~~~~~~~~~~~---~~~L~~L~L~~~~~c~~l~~l~----~~~ 322 (481)
+|++|++++|. ......+..|++|++|+|+ +++..+..+... +++|++|+|++ |.++++-. ..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~---C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIIS---CGNVTDKGIIALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEES---CTTCCHHHHHHGGGC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCC---CCcCCHHHHHHHhcC
Confidence 35555555552 1112234556666666665 556555555442 45666666666 66555321 135
Q ss_pred CcccEEEecCCCCccc
Q 036097 323 PSLKRLEIFKCTKLAA 338 (481)
Q Consensus 323 ~~L~~L~l~~c~~l~~ 338 (481)
++|++|++++|+.+++
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 6666666666665543
No 128
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.14 E-value=6.1e-06 Score=79.85 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhccCCCCCCCcceeEEEEEEEeeCC--h--hhHHHHHHHH-HhCCeeEEEEEEeecCCc--------ccc
Q 036097 88 LLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDD--S--ELADRCVCYA-IESTVKELELHTILRGDR--------LYH 154 (481)
Q Consensus 88 ~~~~v~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~--~--~~~~~~~~~~-~~~~l~~L~L~~~~~~~~--------~~~ 154 (481)
+...+.+++...... + ++.+.+... ..+ . ..+..+.... ..++|+.|.+... ... ...
T Consensus 93 ~~~~~~~fl~~~~~~-~-----v~~L~lg~~-~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~--~~e~~~is~~~~~~ 163 (362)
T 2ra8_A 93 GVNLMDKILKDKKLP-S-----LKQITIGXW-GYEGEDCSDIADGIVENKEKFAHFEGLFWGDI--DFEEQEISWIEQVD 163 (362)
T ss_dssp TCCHHHHHHHCTTGG-G-----CSEEEECCC-CSSSCCSHHHHHHHHTTHHHHTTCSEEEECCC--CTTTCCGGGCBCCB
T ss_pred HHHHHHHHhcCCCch-h-----cceEEEccc-ccCCCcHHHHHHHHHHhhhhcchhhheeecCc--chhhcccccccccC
Confidence 334455555554432 2 777776632 222 1 2233333222 3479999988543 111 123
Q ss_pred cCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhc-CCCccceeEeee
Q 036097 155 LPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVA-GCPLIEDLIFEF 221 (481)
Q Consensus 155 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~~p~Le~L~l~~ 221 (481)
+...+..+|+|+.|+|+++.....+. ...++|++|+|..+.+++..+..+.. .+|+|++|+|..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~---~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK---KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS---CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc---ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 44455678999999999884323322 34899999999999888877766653 799999999864
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.10 E-value=1.8e-06 Score=75.81 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=29.5
Q ss_pred ccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097 154 HLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC 222 (481)
Q Consensus 154 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~ 222 (481)
.+|..+..+++|++|+|++|.+..+++.....+++|++|+|++|.+..-. ...+..+++|++|++++|
T Consensus 45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSS
T ss_pred hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEEECCCC
Confidence 34444444455555555555544443333444455555555554443210 011334444444444444
No 130
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.06 E-value=8.3e-08 Score=93.65 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=44.5
Q ss_pred HhCCeeEEEEEEeecCCcc---cccCCccc-CCCCccEEEEcCeeccCCCC-CCCcCCCcceEEEecceecChHHHHHH-
Q 036097 134 IESTVKELELHTILRGDRL---YHLPQMVV-CSETVNVLDLFGCILLEFPG-RNSVKLPSLRKLRLAQVRASDQVIENL- 207 (481)
Q Consensus 134 ~~~~l~~L~L~~~~~~~~~---~~l~~~~~-~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l- 207 (481)
..+.+++|+++.+ .... ..+...+. .+++|++|+|++|.+.+... .....+++|++|+|++|.+++.....+
T Consensus 70 ~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 70 VLSSLRQLNLAGV--RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHTTCCEEECTTS--CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHhhCCEEEecCC--CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 4466777776655 2111 11222222 23567777777776532100 011234567777777777666333322
Q ss_pred --h-cCCCccceeEeeeec
Q 036097 208 --V-AGCPLIEDLIFEFCE 223 (481)
Q Consensus 208 --~-~~~p~Le~L~l~~~~ 223 (481)
+ ..++.|++|++++|.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC
T ss_pred HHHHhcCCccceeeCCCCC
Confidence 2 245667777776663
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.05 E-value=4.3e-06 Score=69.87 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=7.0
Q ss_pred hhcCCcccEEEecc
Q 036097 295 SYHITRLVVLECLG 308 (481)
Q Consensus 295 ~~~~~~L~~L~L~~ 308 (481)
+..+++|+.|++++
T Consensus 60 ~~~l~~L~~L~Ls~ 73 (149)
T 2je0_A 60 LPKLNKLKKLELSD 73 (149)
T ss_dssp CCCCTTCCEEECCS
T ss_pred hhcCCCCCEEECCC
Confidence 34445555555555
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.02 E-value=2.1e-06 Score=74.13 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=70.5
Q ss_pred CcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-eecCCCCCcEEEEccCCCCceEEEecCCccEEE
Q 036097 183 SVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-KLFGRSKLRDIKIKGGREAEEVNINALNGHSIT 261 (481)
Q Consensus 183 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~ 261 (481)
...+++|+.|+++++.+.. +..+....|+|++|++++|. +..+ .+..+++|+.|+++++.. ..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l-~~~~---------- 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRI-CRIG---------- 80 (176)
T ss_dssp EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCC-CEEC----------
T ss_pred cCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCcc-cccC----------
Confidence 4467889999999998764 22333445689999998874 3332 334456666666666541 1111
Q ss_pred EcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccccccccc---ccccCCcccEEEecCCC
Q 036097 262 VVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQN---IKISSPSLKRLEIFKCT 334 (481)
Q Consensus 262 l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~---l~~~~~~L~~L~l~~c~ 334 (481)
+..+..+++|+.|+++ ++.-.....+..+++|+.|++++|.++..-.. ....+++|+.|+++.+.
T Consensus 81 --------~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 81 --------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp --------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred --------cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 1112444555555544 22111112445677777777777443211111 23346777777777654
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.02 E-value=2.3e-06 Score=73.91 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=43.9
Q ss_pred ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeec
Q 036097 152 LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE 223 (481)
Q Consensus 152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~ 223 (481)
...+|..+ .++|++|+++++.+...+......+++|++|+++++.+.. .....+..+++|++|++++|.
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCEEECCCCC
Confidence 34455433 2578888888887766655445667788888888776643 111224567777777777663
No 134
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.01 E-value=1.1e-06 Score=80.13 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=32.3
Q ss_pred cCCCCCHHHHHHHHcCCChhHHHhhhcccccchh
Q 036097 16 RISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEK 49 (481)
Q Consensus 16 ~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~ 49 (481)
.+++||+||+.+||+||+++|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999995
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.01 E-value=1.8e-06 Score=75.73 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=58.3
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCC-CCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGR-NSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI- 228 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l- 228 (481)
....+|..+. ++|++|++++|.+...+.. ....+++|++|+|+++.++.-. ...+..+++|++|++++|. +..+
T Consensus 19 ~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~ 94 (192)
T 1w8a_A 19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENK-IKEIS 94 (192)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCC-CCEEC
T ss_pred CcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCc-CCccC
Confidence 3456666544 3788888888888766643 2567888888888888775421 2235677888888888774 2222
Q ss_pred --eecCCCCCcEEEEccCC
Q 036097 229 --KLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 229 --~i~~~~~L~~L~l~~~~ 245 (481)
.+..+++|+.|+++++.
T Consensus 95 ~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 95 NKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp SSSSTTCTTCCEEECCSSC
T ss_pred HHHhcCCCCCCEEECCCCc
Confidence 13344666666665553
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.94 E-value=1.5e-05 Score=78.42 Aligned_cols=31 Identities=6% Similarity=0.053 Sum_probs=14.0
Q ss_pred CCccEEEEcCCCCC-CceeccCCCCCcEEEEE
Q 036097 255 LNGHSITVVSPLPS-GKINEVSCKNLKSLFLC 285 (481)
Q Consensus 255 p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~ 285 (481)
.+|+.+.+...... ....+.+|++|+.+.+.
T Consensus 248 ~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 248 SGITTVKLPNGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCCSEEEEETTCCEECTTTTTTCTTCCEEEEE
T ss_pred CCccEEEeCCCccEEChhHhhCCCCCCEEEeC
Confidence 34555554333211 12345555566655554
No 137
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.93 E-value=4.5e-06 Score=77.16 Aligned_cols=38 Identities=32% Similarity=0.614 Sum_probs=34.8
Q ss_pred ccCCCCCHHHHHHHHcCCChhHHH-hhhcccccchhhhc
Q 036097 15 DRISALPEPLLQHIMSFLPSKDAV-RTRLLSKIWEKAWC 52 (481)
Q Consensus 15 d~i~~LPd~iL~~Ils~L~~~d~~-r~~~vskrW~~l~~ 52 (481)
..+..||+|+|.+||++||.++++ |+++|||+|+.+..
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence 468899999999999999999999 99999999998543
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.92 E-value=3.9e-06 Score=73.56 Aligned_cols=103 Identities=12% Similarity=0.111 Sum_probs=74.2
Q ss_pred CCeeEEEEEEeecCCcccccCC--cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 136 STVKELELHTILRGDRLYHLPQ--MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
.++++|+++.+ ....++. .+..+++|++|+|++|.+...++.....+++|++|+|++|.+..-. ...+..+++
T Consensus 29 ~~l~~L~l~~n----~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 103 (192)
T 1w8a_A 29 LHTTELLLNDN----ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQ 103 (192)
T ss_dssp TTCSEEECCSC----CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTT
T ss_pred CCCCEEECCCC----cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCC
Confidence 37888888776 3345554 3667999999999999998776667778999999999999886521 123567899
Q ss_pred cceeEeeeecCcceE---eecCCCCCcEEEEccC
Q 036097 214 IEDLIFEFCEGLKSI---KLFGRSKLRDIKIKGG 244 (481)
Q Consensus 214 Le~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~ 244 (481)
|++|++++|. +..+ .+..+++|+.|+++++
T Consensus 104 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 104 LKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred CCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCC
Confidence 9999999885 2222 2334466666666555
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=3.5e-06 Score=86.85 Aligned_cols=79 Identities=23% Similarity=0.203 Sum_probs=50.1
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
..++.|+++.+ ....+|. +..+++|+.|+|++|.+..+|. ....+++|++|+|++|.++. ++ -+..+++|+
T Consensus 441 ~~L~~L~Ls~n----~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~ 511 (567)
T 1dce_A 441 ADVRVLHLAHK----DLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN--VD-GVANLPRLQ 511 (567)
T ss_dssp TTCSEEECTTS----CCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCC
T ss_pred cCceEEEecCC----CCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCc
Confidence 35666666654 3334565 6667777777777777765543 45567777777777776654 22 356677777
Q ss_pred eeEeeeec
Q 036097 216 DLIFEFCE 223 (481)
Q Consensus 216 ~L~l~~~~ 223 (481)
+|++++|.
T Consensus 512 ~L~Ls~N~ 519 (567)
T 1dce_A 512 ELLLCNNR 519 (567)
T ss_dssp EEECCSSC
T ss_pred EEECCCCC
Confidence 77777663
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.91 E-value=6.9e-06 Score=70.88 Aligned_cols=103 Identities=21% Similarity=0.234 Sum_probs=72.8
Q ss_pred CCeeEEEEEEeecCCcccccCCcc-cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHLPQMV-VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
+++++|++..+ ....++... ..+++|++|++++|.+...++.....+++|++|+++++.+.. .....+..+++|
T Consensus 28 ~~l~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESN----KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEeCCC----cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCHHHhhCCccc
Confidence 57899988876 234555544 578999999999999987776556789999999999998864 122235678999
Q ss_pred ceeEeeeecCcceEe---ecCCCCCcEEEEccC
Q 036097 215 EDLIFEFCEGLKSIK---LFGRSKLRDIKIKGG 244 (481)
Q Consensus 215 e~L~l~~~~~~~~l~---i~~~~~L~~L~l~~~ 244 (481)
++|++++|. +..+. +..+++|+.|+++++
T Consensus 103 ~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 103 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 999999874 33221 223455666665554
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.91 E-value=4.1e-06 Score=86.34 Aligned_cols=117 Identities=18% Similarity=0.105 Sum_probs=63.0
Q ss_pred CccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-eecCCCCCcEEEEc
Q 036097 164 TVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-KLFGRSKLRDIKIK 242 (481)
Q Consensus 164 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-~i~~~~~L~~L~l~ 242 (481)
.|+.|+|++|.+..+|. ...+++|+.|+|++|.+. .++..+..+++|++|++++|.- ..+ .+..
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l-~~lp~l~~---------- 506 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNAL-ENVDGVAN---------- 506 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCC-CCCGGGTT----------
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCC-CCCcccCC----------
Confidence 46666666666655542 455666666666666654 2222345566666666665531 111 2223
Q ss_pred cCCCCceEEEecCCccEEEEcCC-CCCC--ceeccCCCCCcEEEEE---echh--hhHHhhhcCCcccEEEe
Q 036097 243 GGREAEEVNINALNGHSITVVSP-LPSG--KINEVSCKNLKSLFLC---ITSV--VDETLSYHITRLVVLEC 306 (481)
Q Consensus 243 ~~~~~~~~~~~~p~L~~L~l~~~-~~~~--~~~~~~~~~L~~L~l~---~~~~--~~~~~~~~~~~L~~L~L 306 (481)
+++|+.|+++++ .... +..+..+++|+.|+++ +++. ....+...+|+|+.|++
T Consensus 507 -----------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 507 -----------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -----------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -----------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 345555555555 2222 4556677777777765 2221 22344556778877753
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.86 E-value=7.1e-06 Score=72.00 Aligned_cols=89 Identities=22% Similarity=0.289 Sum_probs=52.3
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-- 228 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-- 228 (481)
....+|..+. ++|++|++++|.+..++ .....+++|++|+|+++.++.-. ...+..+++|++|++++|. +..+
T Consensus 21 ~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~ 95 (193)
T 2wfh_A 21 GLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNR-LRCIPP 95 (193)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCBCCT
T ss_pred CCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCc-cCEeCH
Confidence 3445565432 57888888888776555 35566778888888887765311 1225567777777777764 2221
Q ss_pred -eecCCCCCcEEEEccC
Q 036097 229 -KLFGRSKLRDIKIKGG 244 (481)
Q Consensus 229 -~i~~~~~L~~L~l~~~ 244 (481)
.+..+++|+.|+++++
T Consensus 96 ~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 96 RTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHhCCCCCCCEEECCCC
Confidence 1223345555555444
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.83 E-value=7.5e-06 Score=70.21 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=58.5
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-- 228 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-- 228 (481)
....+|..+. ++|++|+|++|.+..+++.....+++|++|+|++|.+.. .....+..+++|++|++++|. +..+
T Consensus 20 ~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~-l~~~~~ 95 (170)
T 3g39_A 20 SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQ-LKSIPR 95 (170)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCc-cCEeCH
Confidence 4455666553 778888888888877766566778888888888887753 112235677888888888774 2222
Q ss_pred -eecCCCCCcEEEEccC
Q 036097 229 -KLFGRSKLRDIKIKGG 244 (481)
Q Consensus 229 -~i~~~~~L~~L~l~~~ 244 (481)
.+..+++|+.|+++++
T Consensus 96 ~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 96 GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHhcCCCCCCEEEeCCC
Confidence 1233455555555554
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.80 E-value=1.1e-05 Score=69.35 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=59.0
Q ss_pred cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097 151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-- 228 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-- 228 (481)
....+|..+. ++|++|+|++|.+...++.....+++|++|+|++|.+.. .....+..+++|++|++++|. +..+
T Consensus 23 ~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~-l~~l~~ 98 (174)
T 2r9u_A 23 RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNH-LKSIPR 98 (174)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCc-cceeCH
Confidence 4456776553 788999999988877766566788889999998887754 112234677888888888774 2222
Q ss_pred -eecCCCCCcEEEEccC
Q 036097 229 -KLFGRSKLRDIKIKGG 244 (481)
Q Consensus 229 -~i~~~~~L~~L~l~~~ 244 (481)
.+..+++|+.|+++++
T Consensus 99 ~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 99 GAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTTCTTCSEEECCSS
T ss_pred HHhccccCCCEEEeCCC
Confidence 1233455555555544
No 145
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.65 E-value=1.2e-05 Score=80.43 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=36.6
Q ss_pred CCccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhc
Q 036097 13 NADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWC 52 (481)
Q Consensus 13 ~~d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~ 52 (481)
..|.|+.||+|++.+||+||+.+|++++++|||+|+++..
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999997543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.62 E-value=2.3e-05 Score=76.27 Aligned_cols=160 Identities=9% Similarity=-0.017 Sum_probs=84.7
Q ss_pred CCCCcEEEEE---echhhhH---Hhhh-cCCcccEEEeccccccc-ccccccccCCcccEEEecCCCCccc-----c---
Q 036097 276 CKNLKSLFLC---ITSVVDE---TLSY-HITRLVVLECLGLIVCF-ELQNIKISSPSLKRLEIFKCTKLAA-----V--- 339 (481)
Q Consensus 276 ~~~L~~L~l~---~~~~~~~---~~~~-~~~~L~~L~L~~~~~c~-~l~~l~~~~~~L~~L~l~~c~~l~~-----~--- 339 (481)
.++|+.|+++ +++.... ..+. ..++|+.|+|++|.+.. .+..+...+++|+.|++++|. +.+ +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 4678888876 4443322 2333 34688888888843211 122233334678888888864 332 1
Q ss_pred -cccCCCcceeEecccccCCcchhhhh---ccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechh
Q 036097 340 -EIETPNLSKCKYNGGVVPFSSSTALK---LLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKE 415 (481)
Q Consensus 340 -~~~~p~L~~L~~~~~~~~~~~~~~l~---~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~ 415 (481)
....++|++|.++++.+.......+. ..+++|+.+++..+.--......+...+.....|++|+++.|........
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 12357788888888766543322221 25677887777665522223334444555555555577776543321100
Q ss_pred hhccCCCCCCCCceEEEEecc
Q 036097 416 LRQILPPPLSGVKHLNFSISI 436 (481)
Q Consensus 416 ~~~~~~~~l~~L~~L~l~~~~ 436 (481)
.....+...++|++|+|+.+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHhCCCCCEEeccCCC
Confidence 000112223567778777665
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.59 E-value=4.7e-05 Score=74.78 Aligned_cols=61 Identities=8% Similarity=0.134 Sum_probs=35.4
Q ss_pred cCCccc-CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce--ecChHHHHHHhcCCCccceeEee
Q 036097 155 LPQMVV-CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV--RASDQVIENLVAGCPLIEDLIFE 220 (481)
Q Consensus 155 l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~~p~Le~L~l~ 220 (481)
+....| +|.+|+.+.|... +..+......+|++|+.++|... .+.+. .+..|+.|+.+.+.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRC----TFSGCYALKSILLP 125 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTT----TTTTCTTCCCCCCC
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccch----hhcccccchhhccc
Confidence 444333 5778888888643 33444445567788888877543 22221 25567777766553
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.54 E-value=1.6e-05 Score=69.89 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=74.4
Q ss_pred HhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 134 IESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 134 ~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
..+++++|+++.+ ....+| .+..+++|++|++++|.+..++. ....+++|++|++++|.+.+ +. -+..+++
T Consensus 46 ~l~~L~~L~ls~n----~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~ 116 (198)
T 1ds9_A 46 TLKACKHLALSTN----NIEKIS-SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIAS--LS-GIEKLVN 116 (198)
T ss_dssp HTTTCSEEECSEE----EESCCC-CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCC--HH-HHHHHHH
T ss_pred cCCCCCEEECCCC----CCcccc-ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCc--CC-ccccCCC
Confidence 3579999999887 334477 67789999999999999976653 33456899999999999875 22 2567899
Q ss_pred cceeEeeeecCc--ceE-eecCCCCCcEEEEccC
Q 036097 214 IEDLIFEFCEGL--KSI-KLFGRSKLRDIKIKGG 244 (481)
Q Consensus 214 Le~L~l~~~~~~--~~l-~i~~~~~L~~L~l~~~ 244 (481)
|++|++++|.-- ..+ .+..+++|+.|+++++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 999999988522 111 2344566777766665
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.53 E-value=4.7e-05 Score=65.43 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=65.5
Q ss_pred CCeeEEEEEEeecCCccccc-CCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHL-PQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
.+++.|+++.+ ....+ |..+..+++|++|+|++|.+..++......+++|++|+|++|.+.. .....+..+++|
T Consensus 33 ~~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNN----QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEeCCC----CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCC
Confidence 68899998876 33455 4456679999999999999988776556789999999999998864 112336779999
Q ss_pred ceeEeeeec
Q 036097 215 EDLIFEFCE 223 (481)
Q Consensus 215 e~L~l~~~~ 223 (481)
++|++++|.
T Consensus 108 ~~L~L~~N~ 116 (174)
T 2r9u_A 108 THIYLYNNP 116 (174)
T ss_dssp SEEECCSSC
T ss_pred CEEEeCCCC
Confidence 999999875
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.51 E-value=5.2e-05 Score=64.87 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=65.0
Q ss_pred CCeeEEEEEEeecCCccccc-CCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097 136 STVKELELHTILRGDRLYHL-PQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI 214 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 214 (481)
.+++.|+++.+ ....+ |..+..+++|++|+|++|.+..+++.....+++|++|+|++|.+.. .....+..+++|
T Consensus 30 ~~l~~L~L~~N----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDN----QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEcCCC----cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCC
Confidence 67888888876 34445 4456679999999999999988776566789999999999998854 112236778999
Q ss_pred ceeEeeeec
Q 036097 215 EDLIFEFCE 223 (481)
Q Consensus 215 e~L~l~~~~ 223 (481)
++|++++|.
T Consensus 105 ~~L~L~~N~ 113 (170)
T 3g39_A 105 THIWLLNNP 113 (170)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 999999874
No 151
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.47 E-value=1.8e-05 Score=84.19 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=25.2
Q ss_pred cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097 160 VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC 222 (481)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~ 222 (481)
..+++|+.|+|++|.+..++. ....+++|++|+|++|.++ .+..-+..+++|++|+|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISA-NIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCG-GGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTS
T ss_pred ccCCCCcEEECCCCCCCCCCh-hhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCC
Confidence 344445555555544433322 2224444555555544443 11112334444555555444
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.46 E-value=2.1e-05 Score=83.62 Aligned_cols=102 Identities=18% Similarity=0.282 Sum_probs=67.4
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE 215 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 215 (481)
..++.|+|+.+ ....+|..++.+++|++|+|++|.+..+| .....+++|++|+|++|.++ .+..-+..+++|+
T Consensus 224 ~~L~~L~Ls~n----~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 224 QLWHALDLSNL----QIFNISANIFKYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLK 296 (727)
T ss_dssp CCCCEEECTTS----CCSCCCGGGGGCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCS
T ss_pred CCCcEEECCCC----CCCCCChhhcCCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCC
Confidence 46777777665 33467777777888888888888776554 34567788888888888775 2233356677788
Q ss_pred eeEeeeecCcceE--eecCCCCCcEEEEccCC
Q 036097 216 DLIFEFCEGLKSI--KLFGRSKLRDIKIKGGR 245 (481)
Q Consensus 216 ~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~ 245 (481)
+|+|++|. +..+ .+..+++|+.|+++++.
T Consensus 297 ~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 297 YFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred EEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence 88887773 2222 24456777777777665
No 153
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.42 E-value=6.5e-05 Score=74.71 Aligned_cols=37 Identities=32% Similarity=0.529 Sum_probs=35.4
Q ss_pred CCccCCCCCHHHHHHHHcCCChhHHHhhhcccccchh
Q 036097 13 NADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEK 49 (481)
Q Consensus 13 ~~d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~ 49 (481)
..|.++.||+|++.+||+||+.+|+++++.|||+|+.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~ 51 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI 51 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence 5689999999999999999999999999999999986
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.38 E-value=0.00024 Score=69.74 Aligned_cols=140 Identities=10% Similarity=0.067 Sum_probs=75.3
Q ss_pred CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce--ecChHHHHHHhcCCCccceeEeeeecCcceE---eecCCCC
Q 036097 161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV--RASDQVIENLVAGCPLIEDLIFEFCEGLKSI---KLFGRSK 235 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---~i~~~~~ 235 (481)
.|.+|+.+++.++.+..++.... .+.+|+.+.|... .+.+ ..+..|++|+++.+..+ +..+ .+.+ .+
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF-~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTF-VYAGIEEVLLPVTLKEIGS----QAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SG 249 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTT-TTCCCSEEECCTTCCEECT----TTTTTCTTCCCEECCTT--CCEECTTTTTT-CC
T ss_pred CcccCCeeecCCCcceEechhhE-eecccCEEEeCCchheehh----hHhhCCCCCCEEecCCC--ccCcccccccc-CC
Confidence 46777777777666655443222 3566777766543 1211 12567788888877642 3332 2223 67
Q ss_pred CcEEEEccCC-C-CceEEEecCCccEEEEcCCCCC-------CceeccCCCCCcEEEEEechhh-hHHhhhcCCcccEEE
Q 036097 236 LRDIKIKGGR-E-AEEVNINALNGHSITVVSPLPS-------GKINEVSCKNLKSLFLCITSVV-DETLSYHITRLVVLE 305 (481)
Q Consensus 236 L~~L~l~~~~-~-~~~~~~~~p~L~~L~l~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~ 305 (481)
|+.+.+.... . .......+++|+.+.+.+.... ....+.+|++|+.+.+.-+-.. -...+.+|++|+.+.
T Consensus 250 L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 250 ITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp CSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEE
T ss_pred ccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEE
Confidence 7777775432 1 1112246889999999876221 2335667777777765400000 012334556666666
Q ss_pred ecc
Q 036097 306 CLG 308 (481)
Q Consensus 306 L~~ 308 (481)
|..
T Consensus 330 lp~ 332 (401)
T 4fdw_A 330 IPA 332 (401)
T ss_dssp ECT
T ss_pred ECc
Confidence 543
No 155
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.32 E-value=3.9e-05 Score=76.21 Aligned_cols=37 Identities=32% Similarity=0.601 Sum_probs=34.9
Q ss_pred CCccCCCCCHH----HHHHHHcCCChhHHHhhhcccccchh
Q 036097 13 NADRISALPEP----LLQHIMSFLPSKDAVRTRLLSKIWEK 49 (481)
Q Consensus 13 ~~d~i~~LPd~----iL~~Ils~L~~~d~~r~~~vskrW~~ 49 (481)
..|.++.||+| |+.+||+||+.+|++++++|||+|++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 36899999999 99999999999999999999999995
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.05 E-value=0.00027 Score=67.86 Aligned_cols=91 Identities=21% Similarity=0.235 Sum_probs=63.0
Q ss_pred cccccCCcccCCCCccEEEEcC-eeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe
Q 036097 151 RLYHLPQMVVCSETVNVLDLFG-CILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK 229 (481)
Q Consensus 151 ~~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~ 229 (481)
....+|. +..+.+|++|+|++ |.+..+++.....+++|+.|+|++|.+.. .....+..+++|++|+|++|. +..+.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~-l~~~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNA-LESLS 96 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSC-CSCCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCc-cceeC
Confidence 4556888 77888999999986 88877765567788999999999988754 122236778899999998874 22221
Q ss_pred ---ecCCCCCcEEEEccCC
Q 036097 230 ---LFGRSKLRDIKIKGGR 245 (481)
Q Consensus 230 ---i~~~~~L~~L~l~~~~ 245 (481)
+.. .+|+.|.+.++.
T Consensus 97 ~~~~~~-~~L~~l~l~~N~ 114 (347)
T 2ifg_A 97 WKTVQG-LSLQELVLSGNP 114 (347)
T ss_dssp STTTCS-CCCCEEECCSSC
T ss_pred HHHccc-CCceEEEeeCCC
Confidence 112 236666666553
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.81 E-value=0.0043 Score=60.59 Aligned_cols=11 Identities=0% Similarity=0.117 Sum_probs=3.3
Q ss_pred hcCcccceEEE
Q 036097 452 WMSPHVDTVTI 462 (481)
Q Consensus 452 ~~~p~L~~L~l 462 (481)
..|.+|+.+.+
T Consensus 375 ~~~~~L~~i~i 385 (394)
T 4gt6_A 375 STDSGLQNLPV 385 (394)
T ss_dssp BCCCCC-----
T ss_pred hccCCCCEEEe
Confidence 44556666555
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.74 E-value=0.0039 Score=60.86 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=15.5
Q ss_pred CcCCCcceEEEeccee--cChHHHHHHhcCCCccceeEee
Q 036097 183 SVKLPSLRKLRLAQVR--ASDQVIENLVAGCPLIEDLIFE 220 (481)
Q Consensus 183 ~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~Le~L~l~ 220 (481)
...+++|+.+.+.... +.+ ..+..|++|+.+.+.
T Consensus 158 F~~c~~L~~i~l~~~~~~I~~----~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 158 FATCESLEYVSLPDSMETLHN----GLFSGCGKLKSIKLP 193 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECT----TTTTTCTTCCBCCCC
T ss_pred hcccCCCcEEecCCccceecc----ccccCCCCceEEEcC
Confidence 3445556666554321 111 124455555555553
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.72 E-value=0.0054 Score=59.86 Aligned_cols=99 Identities=8% Similarity=0.014 Sum_probs=50.5
Q ss_pred cCCCcceeEeccccc--CCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhcc
Q 036097 342 ETPNLSKCKYNGGVV--PFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQI 419 (481)
Q Consensus 342 ~~p~L~~L~~~~~~~--~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~ 419 (481)
.|.+|+++.+..... ..... .+|++|+.+.+...- .. ++ -..|.++.+|+.+.|..+ ...+.+.
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF----~~c~~L~~i~l~~~i--~~-I~--~~aF~~c~~L~~i~lp~~-v~~I~~~---- 328 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAF----MNCPALQDIEFSSRI--TE-LP--ESVFAGCISLKSIDIPEG-ITQILDD---- 328 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTC--CE-EC--TTTTTTCTTCCEEECCTT-CCEECTT----
T ss_pred ecccccEEecccccceecCccc----ccccccccccCCCcc--cc-cC--ceeecCCCCcCEEEeCCc-ccEehHh----
Confidence 456677777655322 22222 377777777662110 00 00 023333344444766533 3333322
Q ss_pred CCCCCCCCceEEEEecc-cchhhhHHHHHhhhhhcCcccceEEE
Q 036097 420 LPPPLSGVKHLNFSISI-PFKKFAIAQVVDGLLWMSPHVDTVTI 462 (481)
Q Consensus 420 ~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~ll~~~p~L~~L~l 462 (481)
.+..+.+|+.+.|-... .++ ..-+.+|++|+.+.+
T Consensus 329 aF~~C~~L~~i~ip~sv~~I~--------~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSSVTKIP--------ESAFSNCTALNNIEY 364 (394)
T ss_dssp TTTTCTTCCEEEECTTCCBCC--------GGGGTTCTTCCEEEE
T ss_pred HhhCCCCCCEEEECcccCEEh--------HhHhhCCCCCCEEEE
Confidence 24446788888884321 111 344678999999888
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.68 E-value=0.00023 Score=61.68 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=15.4
Q ss_pred CcceEEEecceecChHH---HHHHhcCCCccceeEe
Q 036097 187 PSLRKLRLAQVRASDQV---IENLVAGCPLIEDLIF 219 (481)
Q Consensus 187 ~~L~~L~L~~~~~~~~~---l~~l~~~~p~Le~L~l 219 (481)
++|++|+|++|.+++.. +...+..++.|++|++
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 44555555555555432 2222334445555555
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.60 E-value=0.00071 Score=58.59 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=35.5
Q ss_pred cCCCCccEEEEcCe-eccCCC----CCCCcCCCcceEEEecceecChHH---HHHHhcCCCccceeEeeee
Q 036097 160 VCSETVNVLDLFGC-ILLEFP----GRNSVKLPSLRKLRLAQVRASDQV---IENLVAGCPLIEDLIFEFC 222 (481)
Q Consensus 160 ~~~~~L~~L~L~~~-~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~---l~~l~~~~p~Le~L~l~~~ 222 (481)
..+++|++|+|++| .+.+.. .......++|++|+|++|.+.+.. +...+...+.|++|++++|
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 45677777777777 542210 001223566777777777776633 3333445566666666655
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.28 E-value=0.0012 Score=63.22 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=59.7
Q ss_pred CCeeEEEEEE-eecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097 136 STVKELELHT-ILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL 213 (481)
Q Consensus 136 ~~l~~L~L~~-~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 213 (481)
.+|++|+|+. + ....++. .+..+++|+.|+|++|.+..+++.....+++|++|+|++|.+.. ....++...+
T Consensus 31 ~~L~~L~l~~~n----~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~- 104 (347)
T 2ifg_A 31 ENLTELYIENQQ----HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLS- 104 (347)
T ss_dssp SCCSEEECCSCS----SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCC-
T ss_pred CCeeEEEccCCC----CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcccCC-
Confidence 4688998874 4 3445553 45678999999999999887776666789999999999998753 1112233344
Q ss_pred cceeEeeeec
Q 036097 214 IEDLIFEFCE 223 (481)
Q Consensus 214 Le~L~l~~~~ 223 (481)
|+.|++.+|.
T Consensus 105 L~~l~l~~N~ 114 (347)
T 2ifg_A 105 LQELVLSGNP 114 (347)
T ss_dssp CCEEECCSSC
T ss_pred ceEEEeeCCC
Confidence 9999998764
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.36 E-value=0.0061 Score=55.81 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=26.2
Q ss_pred CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCC--cceEEEecceec
Q 036097 136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLP--SLRKLRLAQVRA 199 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~--~L~~L~L~~~~~ 199 (481)
++|+.|+|+.+ .-.....+|..+..+++|+.|+|++|.+.... ....++ +|++|+|.+|.+
T Consensus 170 ~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 170 PELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp TTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTSCCSEEECTTSTT
T ss_pred CCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccCCcceEEccCCcC
Confidence 45555555544 01111123333344555555555555553331 111122 555555555544
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.10 E-value=0.0044 Score=56.72 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=37.4
Q ss_pred CCCCccEEEEcCeeccCCCC--CCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeeec
Q 036097 161 CSETVNVLDLFGCILLEFPG--RNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFCE 223 (481)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~ 223 (481)
++++|+.|+|++|.+..++. .....+++|+.|+|++|.+.+ ..+.. +... .|++|.+++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCc
Confidence 36778888888887755432 122357778888887777755 23332 2223 67777777664
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.64 E-value=0.29 Score=46.97 Aligned_cols=73 Identities=10% Similarity=0.157 Sum_probs=35.8
Q ss_pred CCeeEEEEEEeecCCcccccCCccc-CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce--ecChHHHHHHhcCCC
Q 036097 136 STVKELELHTILRGDRLYHLPQMVV-CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV--RASDQVIENLVAGCP 212 (481)
Q Consensus 136 ~~l~~L~L~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~~p 212 (481)
.+++.+.+.. ....++...| +|.+|+.++|..+ +..+.......+ +|+.+.+... .+.+.. +..|
T Consensus 46 ~~i~~v~ip~-----~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~l~~I~~~a----F~~~- 113 (379)
T 4h09_A 46 DRISEVRVNS-----GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMERVKKFGDYV----FQGT- 113 (379)
T ss_dssp GGCSEEEECT-----TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTTCCEECTTT----TTTC-
T ss_pred cCCEEEEeCC-----CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCceeeEeccce----eccC-
Confidence 4566665432 3344554443 4778888888643 323333333344 4666655432 122221 2333
Q ss_pred ccceeEee
Q 036097 213 LIEDLIFE 220 (481)
Q Consensus 213 ~Le~L~l~ 220 (481)
.|+++.+.
T Consensus 114 ~L~~i~lp 121 (379)
T 4h09_A 114 DLDDFEFP 121 (379)
T ss_dssp CCSEEECC
T ss_pred CcccccCC
Confidence 57777664
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.08 E-value=0.082 Score=45.71 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHHh--CCeeEEEEEEe-e-cCCcccccCCcccCCCCccEEEEcCeeccCCCCCC----CcCCCcceEEEe
Q 036097 123 SELADRCVCYAIE--STVKELELHTI-L-RGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRN----SVKLPSLRKLRL 194 (481)
Q Consensus 123 ~~~~~~~~~~~~~--~~l~~L~L~~~-~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~----~~~~~~L~~L~L 194 (481)
...++..+..+.. +.+++|+|... . .......+...+.....|+.|+|++|.+.+.-... ...-+.|++|+|
T Consensus 26 ~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 26 DTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp -CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred CCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence 4456666666544 45888877542 0 01112223334445677888888888764321111 112356888888
Q ss_pred cceecChHHHHHH---hcCCCccceeEeeee
Q 036097 195 AQVRASDQVIENL---VAGCPLIEDLIFEFC 222 (481)
Q Consensus 195 ~~~~~~~~~l~~l---~~~~p~Le~L~l~~~ 222 (481)
++|.+++.....+ +..-+.|++|+|+++
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 8888877444333 444455777777654
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=85.73 E-value=1.9 Score=41.22 Aligned_cols=210 Identities=11% Similarity=0.051 Sum_probs=94.4
Q ss_pred ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce--ecChHHHHHHhcCCCccceeEeeeecCcc---
Q 036097 152 LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV--RASDQVIENLVAGCPLIEDLIFEFCEGLK--- 226 (481)
Q Consensus 152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~~p~Le~L~l~~~~~~~--- 226 (481)
...++...+...+|+.+++..... ....... ....|+...+... .+... .+..|..++...+.......
T Consensus 102 l~~I~~~aF~~~~L~~i~lp~~~~-~i~~~~F-~~~~l~~~~~~~~v~~i~~~----~f~~~~~l~~~~~~~~~~~~~~~ 175 (379)
T 4h09_A 102 VKKFGDYVFQGTDLDDFEFPGATT-EIGNYIF-YNSSVKRIVIPKSVTTIKDG----IGYKAENLEKIEVSSNNKNYVAE 175 (379)
T ss_dssp CCEECTTTTTTCCCSEEECCTTCC-EECTTTT-TTCCCCEEEECTTCCEECSC----TTTTCTTCCEEEECTTCSSEEEE
T ss_pred eeEeccceeccCCcccccCCCccc-ccccccc-ccceeeeeeccceeeccccc----hhcccccccccccccccceeecc
Confidence 344555556666899999876432 2221122 2235655555432 11111 24567888777765432110
Q ss_pred -----------eEeecCCCCCcEEEEccCCC--CceEEEecCCccEEEEcCCCCC-CceeccCCCCCcEEEEEechhhh-
Q 036097 227 -----------SIKLFGRSKLRDIKIKGGRE--AEEVNINALNGHSITVVSPLPS-GKINEVSCKNLKSLFLCITSVVD- 291 (481)
Q Consensus 227 -----------~l~i~~~~~L~~L~l~~~~~--~~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~- 291 (481)
......+.++..+.+..... .......+.+|+.+.+...... ....+.+|.+|+.+.+.-+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~ 255 (379)
T 4h09_A 176 NYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIG 255 (379)
T ss_dssp TTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEEC
T ss_pred cceecccccceeccccccccccccccccceeEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCCccEeC
Confidence 01111223444443322210 0000112344555554433111 12335566677776654110001
Q ss_pred HHhhhcCCcccEEEeccccccccccccc----ccCCcccEEEecCCC--Cccc-ccccCCCcceeEecccc--cCCcchh
Q 036097 292 ETLSYHITRLVVLECLGLIVCFELQNIK----ISSPSLKRLEIFKCT--KLAA-VEIETPNLSKCKYNGGV--VPFSSST 362 (481)
Q Consensus 292 ~~~~~~~~~L~~L~L~~~~~c~~l~~l~----~~~~~L~~L~l~~c~--~l~~-~~~~~p~L~~L~~~~~~--~~~~~~~ 362 (481)
...+.++.+|+.+.+.. +++.+. ..|++|+.+.+..+. .+.+ ...+|.+|+++.+.... +.....
T Consensus 256 ~~aF~~~~~l~~i~l~~-----~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF- 329 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYA-----KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAF- 329 (379)
T ss_dssp TTTTTTCTTCCEEEECC-----CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTT-
T ss_pred ccccceeehhccccccc-----cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHh-
Confidence 12345666777776644 222221 235667777665421 1222 23456777777775421 222222
Q ss_pred hhhccCCCccEEEE
Q 036097 363 ALKLLETDLNLYTI 376 (481)
Q Consensus 363 ~l~~~~~~L~~l~l 376 (481)
.+|.+|+.+.+
T Consensus 330 ---~~C~~L~~i~i 340 (379)
T 4h09_A 330 ---KNCKALSTISY 340 (379)
T ss_dssp ---TTCTTCCCCCC
T ss_pred ---hCCCCCCEEEE
Confidence 26777777655
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=83.56 E-value=0.72 Score=36.76 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=34.6
Q ss_pred ccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceec
Q 036097 154 HLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRA 199 (481)
Q Consensus 154 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 199 (481)
.+|..+ .++|++|+|++|.+..++......+++|++|+|.+|.+
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 566432 24699999999999888776677889999999998865
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=74.98 E-value=3.4 Score=35.42 Aligned_cols=19 Identities=16% Similarity=-0.064 Sum_probs=11.7
Q ss_pred hhHHhhhcCCcccEEEecc
Q 036097 290 VDETLSYHITRLVVLECLG 308 (481)
Q Consensus 290 ~~~~~~~~~~~L~~L~L~~ 308 (481)
.+..+..+-+.|++|+|++
T Consensus 32 ~l~~ll~~n~~L~~L~L~~ 50 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINN 50 (197)
T ss_dssp HHHHHHTTCSSCCEEECTT
T ss_pred HHHHHHhcCCCccEEECCC
Confidence 3445555666777777765
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=38.21 E-value=15 Score=28.91 Aligned_cols=52 Identities=13% Similarity=0.101 Sum_probs=33.2
Q ss_pred EEEEcCeecc--CCCCCCCcCC-CcceEEEecceecChHHHHHHhcCCCccceeEeeeec
Q 036097 167 VLDLFGCILL--EFPGRNSVKL-PSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE 223 (481)
Q Consensus 167 ~L~L~~~~~~--~~~~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~ 223 (481)
.++-++..+. .+|. .+ ++|++|+|++|.++. .....+...++|+.|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~----~lp~~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT----AFPVDTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCS----CCCTTCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCC----CCCcCCCEEECCCCcCCc-cChhhhhhccccCEEEecCCC
Confidence 4555666554 3432 34 479999999998754 111235667888888888764
Done!