BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036098
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 6 SYRHSLSLTLRHFFPFAANLICPPP-PNHSYISYKKGDSVLVSVAESDSDFNHLTANQAR 64
+ + SLSLTL+++ P A N+ CP + + Y G+SV V +ESD DFN+L R
Sbjct: 59 TLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGYHPR 118
Query: 65 DNTVFHHL---LSEETHA-----VPSMAVQVTVFPNSGISIGIAVNDVAADGRSFNHFVK 116
+ F+H L+E A P +A+QVT+FPN GISIG + VA DG + FV+
Sbjct: 119 NTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVR 178
Query: 117 FWASMSVTHRLED------LPCHEKVLVEDPDGLASIYLNDWRNF 155
WA ++ E +P +++ +++DP+G+ N+ + +
Sbjct: 179 AWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKY 223
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 70/124 (56%), Gaps = 9/124 (7%)
Query: 8 RHSLSLTLRHFFPFAANLIC-PPPPNHSYISYKKGDSVLVSVAESDSDFNHLTANQARDN 66
+HSLS+TL+HF+PF L+ P P I Y +GDSV V+ AE + D N LT N R+
Sbjct: 66 KHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNC 125
Query: 67 TVFHHL---LSEETH-----AVPSMAVQVTVFPNSGISIGIAVNDVAADGRSFNHFVKFW 118
F+ L L E T +P +VQVT+FPN GI+IGI + D + F+K W
Sbjct: 126 DKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAW 185
Query: 119 ASMS 122
S++
Sbjct: 186 TSIA 189
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 70/124 (56%), Gaps = 9/124 (7%)
Query: 8 RHSLSLTLRHFFPFAANLIC-PPPPNHSYISYKKGDSVLVSVAESDSDFNHLTANQARDN 66
+HSLS+TL+HF+PF L+ P P I Y +GDSV V+ AE + D N LT N R+
Sbjct: 66 KHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNC 125
Query: 67 TVFHHL---LSEETH-----AVPSMAVQVTVFPNSGISIGIAVNDVAADGRSFNHFVKFW 118
F+ L L E T +P +VQVT+FPN GI+IGI + D + F+K W
Sbjct: 126 DKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAW 185
Query: 119 ASMS 122
S++
Sbjct: 186 TSIA 189
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 8 RHSLSLTLRHFFPFAANLICPPPPNHSYISYK-KGDSVLVSVAESDS---DFNHLTANQA 63
+ +LS L F+P A L I + G+ VL AESD DF
Sbjct: 62 KDALSRALVPFYPMAGRL---KRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLE 118
Query: 64 RDNTVFHHLLSEETHAVPSMAVQVTVFPNSGISIGIAVNDVAADGRSFNHFVKFWASMS 122
+ S+ + + +QVT F G+S+G+ + AADG S HF+ W+ M+
Sbjct: 119 LRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMA 177
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 8 RHSLSLTLRHFFPFAANLICPPPPNHSYISYK-KGDSVLVSVAESDS---DFNHLTANQA 63
+ +LS L F+P A L I + G+ VL AESD DF
Sbjct: 59 KDALSRALVPFYPMAGRL---KRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLE 115
Query: 64 RDNTVFHHLLSEETHAVPSMAVQVTVFPNSGISIGIAVNDVAADGRSFNHFVKFWASMS 122
+ S+ + + +QVT F G+S+G+ + AADG S HF+ W+ M+
Sbjct: 116 LRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 174
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 8 RHSLSLTLRHFFPFAANLICPPPPNHSYISYK-KGDSVLVSVAESDS---DFNHLTANQA 63
+ +LS L F+P A L I + G+ VL AESD DF
Sbjct: 62 KDALSRALVPFYPMAGRL---KRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLE 118
Query: 64 RDNTVFHHLLSEETHAVPSMAVQVTVFPNSGISIGIAVNDVAADGRSFNHFVKFWASMS 122
+ S+ + + +QVT F G+S+G+ + AADG S HF+ W+ M+
Sbjct: 119 LRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 177
>pdb|2QS7|A Chain A, Crystal Structure Of A Putative Oxidoreductase Of The
DsreDSRF-Like Family (Sso1126) From Sulfolobus
Solfataricus P2 At 2.09 A Resolution
pdb|2QS7|B Chain B, Crystal Structure Of A Putative Oxidoreductase Of The
DsreDSRF-Like Family (Sso1126) From Sulfolobus
Solfataricus P2 At 2.09 A Resolution
pdb|2QS7|C Chain C, Crystal Structure Of A Putative Oxidoreductase Of The
DsreDSRF-Like Family (Sso1126) From Sulfolobus
Solfataricus P2 At 2.09 A Resolution
pdb|2QS7|D Chain D, Crystal Structure Of A Putative Oxidoreductase Of The
DsreDSRF-Like Family (Sso1126) From Sulfolobus
Solfataricus P2 At 2.09 A Resolution
Length = 144
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 97 IGIAVNDVAADGRSFNHFVKFWASMSVTHR 126
+GI + AA G N F FW ++T R
Sbjct: 25 VGILTSGAAASGYEVNLFFTFWGLQAITKR 54
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 8 RHSLSLTLRHFFPFAA--NLICPPPPNHSYISYKKGDSVLVSVAESDSDFNHLTA-NQAR 64
+ SLS L HF+P A N+ N S + + + V ++++ + L +Q
Sbjct: 64 KQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEA-RVQAQLSQAIQNVVELEKLDQYL 122
Query: 65 DNTVFHHLLSEETHAVPSMAVQVTVFPNSGISIGIAVNDVAADGRSFNHFVKFWAS 120
+ + E VP +AV+++ F G +IG+ ++ AD S F+ W +
Sbjct: 123 PSAAYPGGKIEVNEDVP-LAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTA 177
>pdb|3LJY|A Chain A, Crystal Structure Of Putative Adhesin (Yp_001304413.1)
From Parabacteroides Distasonis Atcc 8503 At 2.41 A
Resolution
pdb|3LJY|B Chain B, Crystal Structure Of Putative Adhesin (Yp_001304413.1)
From Parabacteroides Distasonis Atcc 8503 At 2.41 A
Resolution
pdb|3LJY|C Chain C, Crystal Structure Of Putative Adhesin (Yp_001304413.1)
From Parabacteroides Distasonis Atcc 8503 At 2.41 A
Resolution
Length = 243
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 40 KGDSVLVSVAESDSDFNHLTANQARDNTVFHHLLSEETHAVPSMAVQVTVFPNSGISIGI 99
KGD L S S +D+N + + D F++ S++ PS V+VTV N + I
Sbjct: 7 KGDGKLTSKKISVADYNEIKVDGVID---FNYEQSDD----PST-VEVTVDQNLHPYVNI 58
Query: 100 AVND----VAADGRSFNHFVKF 117
V D +A G +HF KF
Sbjct: 59 EVKDRVLTIAFKGAKVDHFTKF 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,752,881
Number of Sequences: 62578
Number of extensions: 221465
Number of successful extensions: 517
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 14
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)