BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036099
         (279 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZTV|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
           (Nadn)
 pdb|3ZU0|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
           (Nadn)
 pdb|3ZU0|B Chain B, Structure Of Haemophilus Influenzae Nad Nucleotidase
           (Nadn)
          Length = 579

 Score = 28.9 bits (63), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 156 RFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVC 215
           RF+   M +E +      +     + ++ P G++ F    +    G  LY+   +G++V 
Sbjct: 389 RFIAETMYNELKTVDLTIQNAGGVRADILP-GNVTFNDAYTFLPFGNTLYTYKMEGSLVK 447

Query: 216 YNIEAPTEVEIVEVPDENYPYGRGV 240
             +E   +  +V+     +PYG G+
Sbjct: 448 QVLEDAMQFALVDGSTGAFPYGAGI 472


>pdb|2EJ9|A Chain A, Crystal Structure Of Biotin Protein Ligase From
           Methanococcus Jannaschii
          Length = 237

 Score = 28.9 bits (63), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 174 KTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEV--EIVEVP 230
           K +++ +L LK P  I+  V  +    GGIL  +TD   I+   I    ++  EI E+ 
Sbjct: 81  KNYVDKELGLKFPNDIMVKVNDNYKKLGGILTELTDDYMIIGIGINVNNQIRNEIREIA 139


>pdb|1R70|B Chain B, Model Of Human Iga2 Determined By Solution Scattering,
           Curve Fitting And Homology Modelling
 pdb|1R70|D Chain D, Model Of Human Iga2 Determined By Solution Scattering,
           Curve Fitting And Homology Modelling
 pdb|3CM9|A Chain A, Solution Structure Of Human Siga2
 pdb|3CM9|B Chain B, Solution Structure Of Human Siga2
 pdb|3CM9|C Chain C, Solution Structure Of Human Siga2
 pdb|3CM9|D Chain D, Solution Structure Of Human Siga2
          Length = 462

 Score = 28.5 bits (62), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 182 NLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVI 241
           +L+P    +++  R  Y  G   +    QGT+V  +  +PT  ++  +  ++ P    V+
Sbjct: 86  SLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLDSTPQDGNVV 145

Query: 242 ELC 244
             C
Sbjct: 146 VAC 148


>pdb|3LHF|A Chain A, The Crystal Structure Of A Serine Recombinase From
           Sulfolobus Solfataricus To 2.3a
 pdb|3LHF|B Chain B, The Crystal Structure Of A Serine Recombinase From
           Sulfolobus Solfataricus To 2.3a
 pdb|3LHF|C Chain C, The Crystal Structure Of A Serine Recombinase From
           Sulfolobus Solfataricus To 2.3a
 pdb|3LHF|D Chain D, The Crystal Structure Of A Serine Recombinase From
           Sulfolobus Solfataricus To 2.3a
          Length = 140

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 17/125 (13%)

Query: 2   EQISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMN 61
           EQ+   + +IT+I   L +K     K++    NN +S V +     L  F F   E+   
Sbjct: 28  EQVKEYDQVITDIGSGLNMKRKGFLKLLRMILNNEVSRVVVAYPDRLVRFGFEILEEVCK 87

Query: 62  YFSYSXXXXXXXXXXXXFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPL 121
                             VE L S+L S  F  KL+            +R H+Y      
Sbjct: 88  AHGCEIVVINQEDKEEELVEDLVSILVS--FSGKLY-----------GMRSHKY----EK 130

Query: 122 TKQCV 126
            K+CV
Sbjct: 131 VKKCV 135


>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
          Length = 306

 Score = 27.3 bits (59), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 158 VRARMVSEAEIFSSETKTWIN-CKLNLKPPGHILFFVMRSVYSRGG 202
           V  R+++  E++   T+TW   C +      H L FV   +++ GG
Sbjct: 163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGG 208


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,923,997
Number of Sequences: 62578
Number of extensions: 300061
Number of successful extensions: 496
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 7
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)