Query 036099
Match_columns 279
No_of_seqs 123 out of 1362
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:27:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 5.1E-29 1.1E-33 202.9 19.3 168 97-277 1-184 (230)
2 PLN03215 ascorbic acid mannose 99.4 3.1E-11 6.8E-16 102.5 19.9 245 3-278 4-302 (373)
3 PF08268 FBA_3: F-box associat 99.4 1.1E-12 2.4E-17 96.8 9.5 75 196-273 1-85 (129)
4 PF07734 FBA_1: F-box associat 99.3 3E-11 6.6E-16 92.9 9.2 79 196-277 1-90 (164)
5 PF12937 F-box-like: F-box-lik 99.0 2.1E-10 4.4E-15 68.7 3.6 41 3-43 1-41 (47)
6 PF00646 F-box: F-box domain; 98.9 6.8E-10 1.5E-14 66.8 1.6 42 1-42 1-42 (48)
7 smart00256 FBOX A Receptor for 98.9 2.6E-09 5.7E-14 61.9 3.7 39 6-44 1-39 (41)
8 PHA02713 hypothetical protein; 98.8 1.9E-07 4.2E-12 85.5 17.1 167 94-278 344-541 (557)
9 PHA02713 hypothetical protein; 98.8 4.8E-07 1E-11 82.9 17.8 145 96-254 298-472 (557)
10 KOG4441 Proteins containing BT 98.6 1.2E-06 2.7E-11 80.2 15.6 148 94-255 325-485 (571)
11 TIGR03548 mutarot_permut cycli 98.6 2.5E-06 5.4E-11 73.1 16.7 152 96-254 118-312 (323)
12 PLN02153 epithiospecifier prot 98.6 3.2E-06 7E-11 73.0 17.3 138 113-253 50-201 (341)
13 PHA03098 kelch-like protein; P 98.6 4E-06 8.7E-11 76.9 17.9 155 97-265 338-510 (534)
14 PHA02790 Kelch-like protein; P 98.6 3.1E-06 6.8E-11 76.4 16.2 143 96-255 313-456 (480)
15 PLN02153 epithiospecifier prot 98.6 4.5E-06 9.8E-11 72.1 16.5 158 97-266 81-284 (341)
16 PHA03098 kelch-like protein; P 98.6 3.3E-06 7.2E-11 77.4 16.3 128 113-254 311-446 (534)
17 TIGR03547 muta_rot_YjhT mutatr 98.6 6.1E-06 1.3E-10 71.4 17.1 155 99-264 15-223 (346)
18 KOG4441 Proteins containing BT 98.5 3E-06 6.6E-11 77.7 15.2 156 92-261 371-543 (571)
19 PLN02193 nitrile-specifier pro 98.5 1.7E-05 3.6E-10 71.5 18.4 169 97-277 224-417 (470)
20 PHA02790 Kelch-like protein; P 98.4 8.9E-06 1.9E-10 73.4 14.6 138 100-253 270-415 (480)
21 PRK14131 N-acetylneuraminic ac 98.4 4.8E-05 1E-09 66.6 18.1 169 97-278 34-256 (376)
22 PLN02193 nitrile-specifier pro 98.3 2.5E-05 5.4E-10 70.4 14.6 152 113-277 193-358 (470)
23 TIGR03548 mutarot_permut cycli 98.2 0.00011 2.5E-09 62.9 16.8 133 113-255 88-233 (323)
24 TIGR03547 muta_rot_YjhT mutatr 98.2 0.0003 6.6E-09 60.8 18.0 135 113-255 168-331 (346)
25 PRK14131 N-acetylneuraminic ac 98.1 0.00033 7.2E-09 61.3 17.3 147 113-267 189-369 (376)
26 KOG4693 Uncharacterized conser 98.0 0.0001 2.3E-09 59.3 10.3 165 98-277 85-283 (392)
27 KOG1230 Protein containing rep 97.9 0.00036 7.7E-09 59.6 13.5 158 113-278 98-288 (521)
28 KOG2120 SCF ubiquitin ligase, 97.6 5.3E-05 1.2E-09 62.3 3.8 42 3-44 98-139 (419)
29 KOG0281 Beta-TrCP (transducin 97.6 0.0012 2.6E-08 55.2 11.6 42 3-44 75-120 (499)
30 KOG4693 Uncharacterized conser 97.1 0.024 5.1E-07 46.1 12.6 132 112-254 156-311 (392)
31 KOG2997 F-box protein FBX9 [Ge 97.0 0.00031 6.7E-09 58.0 1.3 43 3-45 107-154 (366)
32 KOG0379 Kelch repeat-containin 96.6 0.056 1.2E-06 49.0 12.9 152 114-277 89-256 (482)
33 KOG0379 Kelch repeat-containin 96.3 0.35 7.7E-06 43.9 16.1 143 113-266 139-301 (482)
34 PF13964 Kelch_6: Kelch motif 95.9 0.019 4.1E-07 34.3 4.2 36 194-230 5-47 (50)
35 PF07762 DUF1618: Protein of u 95.7 0.069 1.5E-06 39.2 7.4 66 209-276 4-92 (131)
36 KOG1230 Protein containing rep 95.6 0.11 2.4E-06 44.9 8.9 105 165-277 99-222 (521)
37 PF13964 Kelch_6: Kelch motif 95.5 0.029 6.3E-07 33.4 4.0 36 98-133 8-48 (50)
38 KOG0274 Cdc4 and related F-box 95.4 1.6 3.5E-05 40.1 16.6 41 3-43 108-148 (537)
39 PF01344 Kelch_1: Kelch motif; 94.8 0.074 1.6E-06 31.0 4.4 36 194-230 5-47 (47)
40 PF07646 Kelch_2: Kelch motif; 93.8 0.19 4E-06 29.7 4.6 32 194-226 5-45 (49)
41 COG4257 Vgb Streptogramin lyas 93.5 3.9 8.4E-05 34.0 13.5 149 94-259 192-342 (353)
42 PF02191 OLF: Olfactomedin-lik 92.6 2 4.4E-05 35.3 10.3 81 192-274 70-164 (250)
43 PF07893 DUF1668: Protein of u 92.3 6.9 0.00015 33.9 15.5 148 95-255 70-253 (342)
44 PF13418 Kelch_4: Galactose ox 91.6 0.54 1.2E-05 27.6 4.5 36 195-230 6-48 (49)
45 KOG4152 Host cell transcriptio 90.6 2.5 5.4E-05 38.0 9.1 90 113-208 57-153 (830)
46 KOG4341 F-box protein containi 90.4 0.25 5.4E-06 43.1 2.9 38 4-41 73-110 (483)
47 smart00284 OLF Olfactomedin-li 89.8 5.6 0.00012 32.7 10.1 75 192-267 75-162 (255)
48 PF01344 Kelch_1: Kelch motif; 89.4 0.51 1.1E-05 27.3 3.0 36 97-132 7-47 (47)
49 PF12458 DUF3686: ATPase invol 88.5 5.6 0.00012 35.0 9.6 54 202-263 320-383 (448)
50 PF07893 DUF1668: Protein of u 87.5 9.8 0.00021 32.9 10.8 80 165-253 200-296 (342)
51 PF13418 Kelch_4: Galactose ox 87.4 0.89 1.9E-05 26.6 3.1 21 112-132 28-48 (49)
52 COG3055 Uncharacterized protei 87.1 2.9 6.2E-05 35.8 6.9 96 163-264 112-251 (381)
53 PF13570 PQQ_3: PQQ-like domai 83.4 1.9 4.2E-05 24.0 3.1 26 194-220 15-40 (40)
54 PF10282 Lactonase: Lactonase, 82.6 31 0.00067 29.8 12.7 119 141-267 196-325 (345)
55 smart00564 PQQ beta-propeller 81.9 3.9 8.5E-05 21.3 3.9 24 198-222 4-27 (33)
56 PF13013 F-box-like_2: F-box-l 81.9 1.9 4.2E-05 30.4 3.2 29 3-31 22-50 (109)
57 PF13415 Kelch_3: Galactose ox 80.7 2.1 4.5E-05 25.1 2.7 22 112-133 18-39 (49)
58 smart00612 Kelch Kelch domain. 80.6 2.7 5.9E-05 23.8 3.2 23 112-134 14-36 (47)
59 PLN02772 guanylate kinase 78.7 17 0.00037 32.0 8.6 70 193-265 27-107 (398)
60 PRK11138 outer membrane biogen 77.7 49 0.0011 29.1 14.8 98 101-223 256-357 (394)
61 PF13360 PQQ_2: PQQ-like domai 75.2 40 0.00087 26.8 14.9 145 99-264 74-230 (238)
62 cd01207 Ena-Vasp Enabled-VASP- 74.7 16 0.00034 25.9 6.0 55 112-169 8-64 (111)
63 PF06433 Me-amine-dh_H: Methyl 73.6 60 0.0013 28.1 10.6 158 93-267 98-278 (342)
64 PRK11138 outer membrane biogen 72.5 67 0.0015 28.2 17.1 67 194-264 250-321 (394)
65 PF13360 PQQ_2: PQQ-like domai 72.0 48 0.001 26.3 14.6 107 100-223 35-144 (238)
66 COG1520 FOG: WD40-like repeat 68.8 25 0.00055 30.6 7.5 64 196-266 64-129 (370)
67 TIGR03300 assembly_YfgL outer 67.1 85 0.0018 27.3 14.6 59 164-231 289-350 (377)
68 cd01206 Homer Homer type EVH1 64.4 20 0.00043 25.2 4.6 42 112-159 10-52 (111)
69 TIGR03300 assembly_YfgL outer 63.0 69 0.0015 27.8 9.2 21 202-222 106-126 (377)
70 PF08450 SGL: SMP-30/Gluconola 62.9 80 0.0017 25.5 14.0 112 98-226 8-129 (246)
71 PF01011 PQQ: PQQ enzyme repea 62.2 13 0.00029 20.3 3.0 24 202-225 1-26 (38)
72 TIGR03075 PQQ_enz_alc_DH PQQ-d 61.3 1.4E+02 0.003 27.7 11.1 29 196-225 116-146 (527)
73 KOG3926 F-box proteins [Amino 58.8 11 0.00024 31.1 3.1 41 3-43 202-243 (332)
74 TIGR03032 conserved hypothetic 58.2 52 0.0011 28.1 6.9 54 193-253 205-259 (335)
75 COG4257 Vgb Streptogramin lyas 57.4 1.2E+02 0.0025 25.6 12.2 140 98-254 69-208 (353)
76 COG3055 Uncharacterized protei 56.3 1.4E+02 0.003 26.1 9.7 85 163-252 195-292 (381)
77 KOG2394 WD40 protein DMR-N9 [G 54.0 20 0.00044 32.6 4.1 53 209-267 310-365 (636)
78 PF08450 SGL: SMP-30/Gluconola 53.9 1.2E+02 0.0025 24.5 9.7 29 202-231 12-41 (246)
79 TIGR03075 PQQ_enz_alc_DH PQQ-d 53.7 93 0.002 28.8 8.6 32 194-226 63-96 (527)
80 TIGR03074 PQQ_membr_DH membran 52.7 87 0.0019 30.5 8.4 33 193-226 187-221 (764)
81 PRK04792 tolB translocation pr 52.6 1.8E+02 0.0038 26.3 18.6 138 112-265 241-381 (448)
82 PF03088 Str_synth: Strictosid 50.4 33 0.00072 23.2 3.9 48 210-261 36-85 (89)
83 KOG0294 WD40 repeat-containing 49.1 1.7E+02 0.0037 25.0 14.0 130 115-265 151-282 (362)
84 COG3386 Gluconolactonase [Carb 48.1 1.3E+02 0.0029 25.6 8.1 36 196-232 30-67 (307)
85 PF15408 PH_7: Pleckstrin homo 46.3 16 0.00034 24.4 1.7 23 21-43 77-99 (104)
86 KOG4152 Host cell transcriptio 45.5 26 0.00057 31.8 3.5 93 175-277 18-123 (830)
87 KOG2502 Tub family proteins [G 45.3 14 0.00031 31.6 1.8 36 4-39 46-89 (355)
88 KOG0286 G-protein beta subunit 44.1 2E+02 0.0043 24.4 12.8 141 112-265 76-218 (343)
89 PF00568 WH1: WH1 domain; Int 43.7 72 0.0016 22.4 5.0 39 113-158 16-55 (111)
90 PF12768 Rax2: Cortical protei 43.3 99 0.0021 26.0 6.5 63 163-226 15-79 (281)
91 KOG0293 WD40 repeat-containing 42.5 2.5E+02 0.0054 25.1 12.9 130 115-266 293-427 (519)
92 PF14339 DUF4394: Domain of un 42.5 1.9E+02 0.0041 23.6 8.0 63 199-262 37-102 (236)
93 PRK00178 tolB translocation pr 41.0 2.6E+02 0.0056 24.8 18.1 101 112-226 222-326 (430)
94 PF02897 Peptidase_S9_N: Proly 39.6 2.7E+02 0.0058 24.5 13.3 105 150-264 238-357 (414)
95 KOG0640 mRNA cleavage stimulat 39.0 1.7E+02 0.0037 25.0 7.0 61 202-264 273-335 (430)
96 PF07370 DUF1489: Protein of u 36.5 32 0.00069 25.3 2.2 26 196-221 42-72 (137)
97 PLN02919 haloacid dehalogenase 33.8 5.4E+02 0.012 26.4 18.4 161 99-265 692-889 (1057)
98 PF07433 DUF1513: Protein of u 33.7 3E+02 0.0066 23.5 9.4 73 153-231 18-96 (305)
99 KOG3545 Olfactomedin and relat 33.7 2.3E+02 0.0051 23.3 6.9 71 193-265 70-154 (249)
100 cd00216 PQQ_DH Dehydrogenases 32.7 2.1E+02 0.0046 26.1 7.5 31 194-225 55-87 (488)
101 cd00837 EVH1 EVH1 (Enabled, Va 31.6 1.8E+02 0.0039 20.2 5.7 51 113-169 9-61 (104)
102 KOG0283 WD40 repeat-containing 31.0 5E+02 0.011 25.1 12.4 159 85-267 416-579 (712)
103 PF06977 SdiA-regulated: SdiA- 30.6 2.3E+02 0.0049 23.4 6.6 59 195-254 174-241 (248)
104 TIGR03493 cellullose_BcsF cell 30.1 38 0.00082 21.0 1.5 42 1-44 1-46 (62)
105 KOG0639 Transducin-like enhanc 29.4 2.8E+02 0.006 25.5 7.1 55 209-265 485-540 (705)
106 PF07250 Glyoxal_oxid_N: Glyox 29.1 2.9E+02 0.0062 22.7 6.9 93 163-262 45-146 (243)
107 KOG0289 mRNA splicing factor [ 29.1 4.3E+02 0.0094 23.8 8.8 79 95-182 394-472 (506)
108 KOG0315 G-protein beta subunit 28.9 3.4E+02 0.0074 22.6 12.7 66 209-275 187-263 (311)
109 KOG4649 PQQ (pyrrolo-quinoline 28.8 3.5E+02 0.0076 22.7 13.3 71 150-231 63-135 (354)
110 PF13497 DUF4121: Domain of un 28.7 78 0.0017 25.9 3.4 83 193-278 126-233 (262)
111 PF10781 DSRB: Dextransucrase 28.5 1.1E+02 0.0025 18.6 3.2 27 244-270 28-54 (62)
112 PRK10708 hypothetical protein; 27.7 1.1E+02 0.0024 18.6 3.1 27 244-270 28-54 (62)
113 TIGR02940 anfO_nitrog Fe-only 27.5 1.1E+02 0.0024 24.5 4.1 31 202-232 10-40 (214)
114 PF06881 Elongin_A: RNA polyme 27.4 75 0.0016 22.3 2.9 27 3-29 4-30 (109)
115 cd00260 Sialidase Sialidases o 26.7 4E+02 0.0088 22.7 11.6 71 195-266 150-231 (351)
116 KOG2139 WD40 repeat protein [G 26.6 3.2E+02 0.0068 24.1 6.7 44 101-147 206-249 (445)
117 PF09582 AnfO_nitrog: Iron onl 26.0 77 0.0017 25.2 3.0 31 202-232 11-41 (202)
118 cd00216 PQQ_DH Dehydrogenases 25.8 3.5E+02 0.0076 24.7 7.6 56 195-255 401-458 (488)
119 KOG0649 WD40 repeat protein [G 24.8 3.8E+02 0.0083 22.2 6.6 60 202-264 127-186 (325)
120 COG3196 Uncharacterized protei 24.6 58 0.0013 24.2 1.9 16 4-19 82-97 (183)
121 PRK04043 tolB translocation pr 24.4 5.2E+02 0.011 23.1 17.8 116 98-226 195-316 (419)
122 PF05096 Glu_cyclase_2: Glutam 24.0 4.3E+02 0.0093 22.1 11.4 63 163-232 67-131 (264)
123 KOG0310 Conserved WD40 repeat- 23.8 5.6E+02 0.012 23.3 10.0 130 119-265 8-142 (487)
124 PF07861 WND: WisP family N-Te 23.7 1.5E+02 0.0032 23.2 4.0 38 87-126 26-63 (263)
125 PF14339 DUF4394: Domain of un 23.4 2.5E+02 0.0054 23.0 5.4 53 101-156 38-92 (236)
126 COG1520 FOG: WD40-like repeat 23.3 4.9E+02 0.011 22.5 10.4 108 101-224 111-224 (370)
127 PTZ00334 trans-sialidase; Prov 23.2 7.3E+02 0.016 24.5 9.2 73 193-267 262-343 (780)
128 COG1327 Predicted transcriptio 23.0 58 0.0012 24.4 1.6 28 10-37 111-138 (156)
129 PF03022 MRJP: Major royal jel 22.1 4.8E+02 0.01 21.9 14.2 148 112-265 33-216 (287)
130 COG5559 Uncharacterized conser 21.8 71 0.0015 19.6 1.6 13 5-17 10-22 (65)
131 KOG4190 Uncharacterized conser 21.6 2.2E+02 0.0048 26.4 5.2 101 113-222 804-909 (1034)
132 KOG0771 Prolactin regulatory e 21.5 5.8E+02 0.013 22.7 8.6 123 98-226 194-318 (398)
133 PF14870 PSII_BNR: Photosynthe 21.3 5.2E+02 0.011 22.0 9.1 61 167-231 38-100 (302)
134 KOG0315 G-protein beta subunit 20.9 5E+02 0.011 21.7 15.6 56 208-265 143-198 (311)
135 PF11900 DUF3420: Domain of un 20.8 73 0.0016 18.9 1.5 11 4-14 9-19 (49)
136 KOG1310 WD40 repeat protein [G 20.4 3.7E+02 0.008 25.1 6.3 67 99-172 59-125 (758)
137 PF14781 BBS2_N: Ciliary BBSom 20.2 3.7E+02 0.008 19.9 9.0 101 111-222 18-128 (136)
138 PF07250 Glyoxal_oxid_N: Glyox 20.0 3E+02 0.0065 22.6 5.4 46 214-262 49-97 (243)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.97 E-value=5.1e-29 Score=202.91 Aligned_cols=168 Identities=24% Similarity=0.404 Sum_probs=129.8
Q ss_pred eeccCcEEEEeeecCCeeEEEEcCCCccccccCCCCcc---CCCcccEEEecCCCCCceEEEEEEecc---ccceEEEEe
Q 036099 97 FDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARER---VLESAPALAFDPRDSSHYKIIRFVRAR---MVSEAEIFS 170 (279)
Q Consensus 97 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~---~~~~~~~lg~d~~~~~~ykvv~~~~~~---~~~~~~vy~ 170 (279)
+++||||||+... ..++||||+||+++.||+++.. .....+++|||+.. ++||||++.... ....++||+
T Consensus 1 ~~sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~-~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 1 VVPCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIE-KQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred CcccceEEEEecC---CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccC-CcEEEEEEEeecCCCCCccEEEEE
Confidence 4789999988762 6899999999999999977542 12225799999986 999999998642 256899999
Q ss_pred CCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEecCC------eEEEEecCCCeEE-EEecCCCCCCC-CCCeeEE
Q 036099 171 SETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQG------TIVCYNIEAPTEV-EIVEVPDENYP-YGRGVIE 242 (279)
Q Consensus 171 s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~~------~i~~fD~~~~~~~-~i~~~P~~~~~-~~~~~l~ 242 (279)
+++++||.+... |. ... ....+|++| |.+||++... .|++||+.+|+|+ .+ ++|..... .....|+
T Consensus 77 ~~~~~Wr~~~~~--~~-~~~-~~~~~v~~~-G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i-~~P~~~~~~~~~~~L~ 150 (230)
T TIGR01640 77 LGSNSWRTIECS--PP-HHP-LKSRGVCIN-GVLYYLAYTLKTNPDYFIVSFDVSSERFKEFI-PLPCGNSDSVDYLSLI 150 (230)
T ss_pred eCCCCccccccC--CC-Ccc-ccCCeEEEC-CEEEEEEEECCCCCcEEEEEEEcccceEeeee-ecCccccccccceEEE
Confidence 999999998743 22 111 223489999 9999998421 7999999999999 58 88875321 2246789
Q ss_pred eeCCeEEEEEeCC--CeEEEEEeccCCCCCccccccc
Q 036099 243 LCKGVLNYANRNE--SKLLIWLFDDRHHNNSHSGSKA 277 (279)
Q Consensus 243 ~~~G~L~~~~~~~--~~~~vW~l~~~~~~~~w~w~k~ 277 (279)
+.+|+|+++.... .+++||+|+++++.+ |+|.
T Consensus 151 ~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~---W~k~ 184 (230)
T TIGR01640 151 NYKGKLAVLKQKKDTNNFDLWVLNDAGKQE---WSKL 184 (230)
T ss_pred EECCEEEEEEecCCCCcEEEEEECCCCCCc---eeEE
Confidence 9999999999753 569999999887654 5563
No 2
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.43 E-value=3.1e-11 Score=102.55 Aligned_cols=245 Identities=15% Similarity=0.195 Sum_probs=129.7
Q ss_pred CCCCCHHHHHHHHhcCC-hhhhHHHhhhhHHHHhhhcCC----CCCCccCCcceEEcccCccccccccCCCCCCCCCCCC
Q 036099 3 QISLSEDLITEILCRLP-VKSVTRFKIVSKAWNNLISNV----CIPRISNLSGFLFHSTEDCMNYFSYSDNNEGCGNDGE 77 (279)
Q Consensus 3 ~~~LP~Dll~eIL~rLP-~~~l~r~r~VcK~W~~li~~~----~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (279)
.+.||+|||..|..||| ..++.|+|+|||+||+.+... .|.+ . ..++..... ...++.. .++....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~--~-~~~~~~~~~---~~~~~~~--~~~~~~~- 74 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGKKNPFRT--R-PLILFNPIN---PSETLTD--DRSYISR- 74 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccccCCccc--c-cccccCccc---CCCCccc--ccccccc-
Confidence 58999999999999998 789999999999999988742 1443 1 111111100 0000000 0000000
Q ss_pred CcccccCCCCCCCCCCc-eEeeccCcEEEEeeec-CCeeEEEEcCCCccccccCCCCcc-------CCCcccEE-Ee---
Q 036099 78 GFVESLTSLLPSEYFPY-KLFDSCNGLILLGSSL-REHRYYVCNPLTKQCVAIPKARER-------VLESAPAL-AF--- 144 (279)
Q Consensus 78 ~~~~~~~~~~p~~~~~~-~~~~s~~Glll~~~~~-~~~~~~v~NP~T~~~~~lP~~~~~-------~~~~~~~l-g~--- 144 (279)
....+.+....+. ...++.+|+|.-.... ...++.+.||+++.-..+|+.-.. .....+.+ +.
T Consensus 75 ----~~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~ 150 (373)
T PLN03215 75 ----PGAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKR 150 (373)
T ss_pred ----ccceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecccc
Confidence 0000011000001 0113568888775522 457788999999997777752111 00000011 11
Q ss_pred ---------------cCCCCCceEEEEEEeccccceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec
Q 036099 145 ---------------DPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD 209 (279)
Q Consensus 145 ---------------d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~ 209 (279)
......+|.|+++...+. +... ..++|..++.. . .....-++++ |++|.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~---l~~w--~~~~Wt~l~~~---~----~~~~DIi~~k-GkfYAvD~ 217 (373)
T PLN03215 151 RETRPGYQRSALVKVKEGDNHRDGVLGIGRDGK---INYW--DGNVLKALKQM---G----YHFSDIIVHK-GQTYALDS 217 (373)
T ss_pred cccccceeEEEEEEeecCCCcceEEEEEeecCc---Eeee--cCCeeeEccCC---C----ceeeEEEEEC-CEEEEEcC
Confidence 111001244444443221 1111 14678777532 1 1245678999 99999988
Q ss_pred CCeEEEEecCCCeEEEEec-CCCCC---CCCCCeeEEeeCCeEEEEEeCC-----------------CeEEEEEeccCCC
Q 036099 210 QGTIVCYNIEAPTEVEIVE-VPDEN---YPYGRGVIELCKGVLNYANRNE-----------------SKLLIWLFDDRHH 268 (279)
Q Consensus 210 ~~~i~~fD~~~~~~~~i~~-~P~~~---~~~~~~~l~~~~G~L~~~~~~~-----------------~~~~vW~l~~~~~ 268 (279)
.+.+.++|..-+ .+.+.. +.... .......++++.|+|++|.... ..++|+.++...
T Consensus 218 ~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~- 295 (373)
T PLN03215 218 IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDEL- 295 (373)
T ss_pred CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCC-
Confidence 899999995432 233311 11111 1123467889999999998621 358889887432
Q ss_pred CCcccccccC
Q 036099 269 NNSHSGSKAA 278 (279)
Q Consensus 269 ~~~w~w~k~~ 278 (279)
-.|.+|.
T Consensus 296 ---~~WveV~ 302 (373)
T PLN03215 296 ---AKWMEVK 302 (373)
T ss_pred ---CcEEEec
Confidence 2466653
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.43 E-value=1.1e-12 Score=96.84 Aligned_cols=75 Identities=20% Similarity=0.380 Sum_probs=61.6
Q ss_pred eEEEeCCeEEEEec-----CCeEEEEecCCCeEEEEecCCCC-CCCCCCeeEEeeCCeEEEEEeCC----CeEEEEEecc
Q 036099 196 SVYSRGGILYSITD-----QGTIVCYNIEAPTEVEIVEVPDE-NYPYGRGVIELCKGVLNYANRNE----SKLLIWLFDD 265 (279)
Q Consensus 196 ~v~~~~g~ly~l~~-----~~~i~~fD~~~~~~~~i~~~P~~-~~~~~~~~l~~~~G~L~~~~~~~----~~~~vW~l~~ 265 (279)
++++| |.+||++. ...|++||+.+|+|+.| ++|.. ........|.+++|+|+++.... ..++||+|+|
T Consensus 1 gicin-Gvly~~a~~~~~~~~~IvsFDv~~E~f~~i-~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 1 GICIN-GVLYWLAWSEDSDNNVIVSFDVRSEKFRFI-KLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred CEEEC-cEEEeEEEECCCCCcEEEEEEcCCceEEEE-EeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 57899 99999985 49999999999999999 99922 23345588999999999998765 3599999999
Q ss_pred CCCCCccc
Q 036099 266 RHHNNSHS 273 (279)
Q Consensus 266 ~~~~~~w~ 273 (279)
++++ .|+
T Consensus 79 ~~k~-~Ws 85 (129)
T PF08268_consen 79 YEKQ-EWS 85 (129)
T ss_pred cccc-eEE
Confidence 8864 344
No 4
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.27 E-value=3e-11 Score=92.95 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=59.6
Q ss_pred eEEEeCCeEEEEec----C--CeEEEEecCCCeE-EEEecCCCCCC-CCCCeeEEe-eCCeEEEEEeCC--CeEEEEEec
Q 036099 196 SVYSRGGILYSITD----Q--GTIVCYNIEAPTE-VEIVEVPDENY-PYGRGVIEL-CKGVLNYANRNE--SKLLIWLFD 264 (279)
Q Consensus 196 ~v~~~~g~ly~l~~----~--~~i~~fD~~~~~~-~~i~~~P~~~~-~~~~~~l~~-~~G~L~~~~~~~--~~~~vW~l~ 264 (279)
+|++| |++||++. . ..|++||+.+|+| +.+ ++|.... ......|.. .+++||++.... ..++||+|+
T Consensus 1 gV~vn-G~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~-~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVN-GALHWLAYDENNDEKDFILSFDLSTEKFGRSL-PLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK 78 (164)
T ss_pred CEEEC-CEEEeeEEecCCCCceEEEEEeccccccCCEE-CCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence 58999 99999992 1 1799999999999 888 9998644 233355643 478999997533 579999999
Q ss_pred cCCCCCccccccc
Q 036099 265 DRHHNNSHSGSKA 277 (279)
Q Consensus 265 ~~~~~~~w~w~k~ 277 (279)
+++.+ .-+|+|.
T Consensus 79 ~~~~~-~~SWtK~ 90 (164)
T PF07734_consen 79 KYGYG-KESWTKL 90 (164)
T ss_pred eeccC-cceEEEE
Confidence 86643 4577775
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.04 E-value=2.1e-10 Score=68.72 Aligned_cols=41 Identities=20% Similarity=0.460 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCC
Q 036099 3 QISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIP 43 (279)
Q Consensus 3 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~ 43 (279)
+..||+|++.+||++||++++.+++.|||+|+.++.++.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW 41 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW 41 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence 57899999999999999999999999999999999887543
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.88 E-value=6.8e-10 Score=66.85 Aligned_cols=42 Identities=29% Similarity=0.554 Sum_probs=35.0
Q ss_pred CCCCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCC
Q 036099 1 MEQISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCI 42 (279)
Q Consensus 1 ~~~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F 42 (279)
|++..||+|++.+||.+|+.+++.+++.|||+|++++.+..+
T Consensus 1 ~~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~ 42 (48)
T PF00646_consen 1 FPLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRL 42 (48)
T ss_dssp -HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHH
T ss_pred CCHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCc
Confidence 457789999999999999999999999999999999987653
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.87 E-value=2.6e-09 Score=61.90 Aligned_cols=39 Identities=33% Similarity=0.608 Sum_probs=36.4
Q ss_pred CCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCCC
Q 036099 6 LSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR 44 (279)
Q Consensus 6 LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~ 44 (279)
||+|++.+||.+|+.+++.++++|||+|+.++.++.+.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887654
No 8
>PHA02713 hypothetical protein; Provisional
Probab=98.85 E-value=1.9e-07 Score=85.48 Aligned_cols=167 Identities=11% Similarity=0.024 Sum_probs=105.2
Q ss_pred ceEeeccCcEEEEeeecC----CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc--------
Q 036099 94 YKLFDSCNGLILLGSSLR----EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR-------- 161 (279)
Q Consensus 94 ~~~~~s~~Glll~~~~~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~-------- 161 (279)
...+++.+|.|.+..+.. ...+.++||.|++|..+|+++....... ...++ +.-.|++.....
T Consensus 344 ~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~-~~~~~----g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 344 RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYG-MCVLD----QYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccccc-EEEEC----CEEEEEeCCCcccccccccc
Confidence 345566677776655321 2457899999999999999876433221 11222 222333322110
Q ss_pred -----------ccceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEecC-------CeEEEEecCC-Ce
Q 036099 162 -----------MVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQ-------GTIVCYNIEA-PT 222 (279)
Q Consensus 162 -----------~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~-------~~i~~fD~~~-~~ 222 (279)
....+++|++++++|..+..... . ......+.++ |++|.+++. ..+-.||+.+ ++
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~--~---r~~~~~~~~~-~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~ 492 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT--G---TIRPGVVSHK-DDIYVVCDIKDEKNVKTCIFRYNTNTYNG 492 (557)
T ss_pred cccccccccccccceEEEECCCCCeEeecCCCCc--c---cccCcEEEEC-CEEEEEeCCCCCCccceeEEEecCCCCCC
Confidence 13468999999999998876532 1 1234568888 999999842 2467999999 89
Q ss_pred EEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCCCeEEEEEeccCCCCCcccccccC
Q 036099 223 EVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDDRHHNNSHSGSKAA 278 (279)
Q Consensus 223 ~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~vW~l~~~~~~~~w~w~k~~ 278 (279)
|+.+.++|.. .....++..+|+|++++..+... ..+.-+...=.|+.++
T Consensus 493 W~~~~~m~~~---r~~~~~~~~~~~iyv~Gg~~~~~----~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 493 WELITTTESR---LSALHTILHDNTIMMLHCYESYM----LQDTFNVYTYEWNHIC 541 (557)
T ss_pred eeEccccCcc---cccceeEEECCEEEEEeeeccee----ehhhcCcccccccchh
Confidence 9998556653 23456677899999999865421 1222223344676664
No 9
>PHA02713 hypothetical protein; Provisional
Probab=98.80 E-value=4.8e-07 Score=82.94 Aligned_cols=145 Identities=10% Similarity=0.019 Sum_probs=94.6
Q ss_pred EeeccCcEEEEeeecC-----CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc-ccceEEEE
Q 036099 96 LFDSCNGLILLGSSLR-----EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR-MVSEAEIF 169 (279)
Q Consensus 96 ~~~s~~Glll~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~-~~~~~~vy 169 (279)
.++..+|.|.+..+.. ...++.+||.+++|..+|+++..+.... ....+ +.-.|++..... ....+++|
T Consensus 298 ~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~-~~~~~----g~IYviGG~~~~~~~~sve~Y 372 (557)
T PHA02713 298 ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS-LAVID----DTIYAIGGQNGTNVERTIECY 372 (557)
T ss_pred EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee-EEEEC----CEEEEECCcCCCCCCceEEEE
Confidence 3455577766655321 2457899999999999999875432221 11122 222333322111 14569999
Q ss_pred eCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEecC------------------------CeEEEEecCCCeEEE
Q 036099 170 SSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQ------------------------GTIVCYNIEAPTEVE 225 (279)
Q Consensus 170 ~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~------------------------~~i~~fD~~~~~~~~ 225 (279)
++.+++|...+..+.| ......+.++ |++|.+++. ..+.+||+.+++|+.
T Consensus 373 dp~~~~W~~~~~mp~~-----r~~~~~~~~~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 373 TMGDDKWKMLPDMPIA-----LSSYGMCVLD-QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred ECCCCeEEECCCCCcc-----cccccEEEEC-CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 9999999988765321 1233567788 999999842 358899999999999
Q ss_pred EecCCCCCCCCCCeeEEeeCCeEEEEEeC
Q 036099 226 IVEVPDENYPYGRGVIELCKGVLNYANRN 254 (279)
Q Consensus 226 i~~~P~~~~~~~~~~l~~~~G~L~~~~~~ 254 (279)
+.++|.. .....++..+|+|++++..
T Consensus 447 v~~m~~~---r~~~~~~~~~~~IYv~GG~ 472 (557)
T PHA02713 447 LPNFWTG---TIRPGVVSHKDDIYVVCDI 472 (557)
T ss_pred cCCCCcc---cccCcEEEECCEEEEEeCC
Confidence 8444432 2234567789999999864
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.65 E-value=1.2e-06 Score=80.18 Aligned_cols=148 Identities=14% Similarity=0.118 Sum_probs=99.5
Q ss_pred ceEeeccCcEEEEeeecC-----CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEec-cccceEE
Q 036099 94 YKLFDSCNGLILLGSSLR-----EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRA-RMVSEAE 167 (279)
Q Consensus 94 ~~~~~s~~Glll~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~-~~~~~~~ 167 (279)
..-++..+|.|.+..+.+ .+.+..+||.+++|..+|++...+.. +|..... +.-.+|+.... .....+|
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~----~~v~~l~-g~iYavGG~dg~~~l~svE 399 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD----FGVAVLD-GKLYAVGGFDGEKSLNSVE 399 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc----ceeEEEC-CEEEEEeccccccccccEE
Confidence 444556677776665332 35688999999999999999764322 2221111 22222222221 1266799
Q ss_pred EEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec----C---CeEEEEecCCCeEEEEecCCCCCCCCCCee
Q 036099 168 IFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD----Q---GTIVCYNIEAPTEVEIVEVPDENYPYGRGV 240 (279)
Q Consensus 168 vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~----~---~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~ 240 (279)
.|++.+++|.....+. . .......+.++ |.+|-+++ . ..+-.||+.+++|+.+++++- ......
T Consensus 400 ~YDp~~~~W~~va~m~--~---~r~~~gv~~~~-g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~---~R~~~g 470 (571)
T KOG4441|consen 400 CYDPVTNKWTPVAPML--T---RRSGHGVAVLG-GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT---RRSGFG 470 (571)
T ss_pred EecCCCCcccccCCCC--c---ceeeeEEEEEC-CEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc---ccccce
Confidence 9999999999887652 2 23344678888 99999993 2 689999999999999833443 223344
Q ss_pred EEeeCCeEEEEEeCC
Q 036099 241 IELCKGVLNYANRNE 255 (279)
Q Consensus 241 l~~~~G~L~~~~~~~ 255 (279)
++..+|+|++++..+
T Consensus 471 ~a~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFD 485 (571)
T ss_pred EEEECCEEEEECCcc
Confidence 788899999999865
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.64 E-value=2.5e-06 Score=73.11 Aligned_cols=152 Identities=12% Similarity=0.093 Sum_probs=90.1
Q ss_pred EeeccCcEEEEeeec----CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeC
Q 036099 96 LFDSCNGLILLGSSL----REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSS 171 (279)
Q Consensus 96 ~~~s~~Glll~~~~~----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s 171 (279)
..+..+|.|.+.... ....++++||.|++|..+|+++...+.......++ +.-.|+.-........+++|+.
T Consensus 118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~----~~iYv~GG~~~~~~~~~~~yd~ 193 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQ----NELYVFGGGSNIAYTDGYKYSP 193 (323)
T ss_pred eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEEC----CEEEEEcCCCCccccceEEEec
Confidence 344557776665421 24578999999999999987653222111111111 2223333221111345789999
Q ss_pred CCCCccccccCCCCCceeeeeccC-eEEEeCCeEEEEecC--------------------------------------Ce
Q 036099 172 ETKTWINCKLNLKPPGHILFFVMR-SVYSRGGILYSITDQ--------------------------------------GT 212 (279)
Q Consensus 172 ~~~~W~~~~~~~~p~~~~~~~~~~-~v~~~~g~ly~l~~~--------------------------------------~~ 212 (279)
++++|+.+................ .+..+ |++|.++.. ..
T Consensus 194 ~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (323)
T TIGR03548 194 KKNQWQKVADPTTDSEPISLLGAASIKINE-SLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRK 272 (323)
T ss_pred CCCeeEECCCCCCCCCceeccceeEEEECC-CEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCce
Confidence 999999886542100011111122 34446 899998832 46
Q ss_pred EEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeC
Q 036099 213 IVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRN 254 (279)
Q Consensus 213 i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~ 254 (279)
+.+||+.+++|+.+.++|.. ......++..+++|+++...
T Consensus 273 v~~yd~~~~~W~~~~~~p~~--~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 273 ILIYNVRTGKWKSIGNSPFF--ARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred EEEEECCCCeeeEccccccc--ccCchheEEECCEEEEEecc
Confidence 99999999999998445532 12234567779999999864
No 12
>PLN02153 epithiospecifier protein
Probab=98.64 E-value=3.2e-06 Score=72.99 Aligned_cols=138 Identities=14% Similarity=0.080 Sum_probs=79.3
Q ss_pred eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc-ccceEEEEeCCCCCccccccCCCCCceeee
Q 036099 113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR-MVSEAEIFSSETKTWINCKLNLKPPGHILF 191 (279)
Q Consensus 113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~-~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~ 191 (279)
..++++|+.+++|..+|+..........+....... +...|+.-.... ....+++|+..+++|+..+....+......
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG-TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC-CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 468999999999999876532111111111111111 222222221111 134689999999999977543110001111
Q ss_pred eccCeEEEeCCeEEEEecC------------CeEEEEecCCCeEEEEecCCCC-CCCCCCeeEEeeCCeEEEEEe
Q 036099 192 FVMRSVYSRGGILYSITDQ------------GTIVCYNIEAPTEVEIVEVPDE-NYPYGRGVIELCKGVLNYANR 253 (279)
Q Consensus 192 ~~~~~v~~~~g~ly~l~~~------------~~i~~fD~~~~~~~~i~~~P~~-~~~~~~~~l~~~~G~L~~~~~ 253 (279)
.....+..+ +++|.++.. ..+.+||+.+++|+.+ +.+.. ........++..+|+|+++..
T Consensus 129 ~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l-~~~~~~~~~r~~~~~~~~~~~iyv~GG 201 (341)
T PLN02153 129 TFHSMASDE-NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQL-PDPGENFEKRGGAGFAVVQGKIWVVYG 201 (341)
T ss_pred eeeEEEEEC-CEEEEECCccCCCccCCCcccceEEEEECCCCeEeeC-CCCCCCCCCCCcceEEEECCeEEEEec
Confidence 233556778 999999842 2578999999999998 54321 111222345667999998864
No 13
>PHA03098 kelch-like protein; Provisional
Probab=98.61 E-value=4e-06 Score=76.86 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=96.4
Q ss_pred eeccCcEEEEeeecC----CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc--cceEEEEe
Q 036099 97 FDSCNGLILLGSSLR----EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM--VSEAEIFS 170 (279)
Q Consensus 97 ~~s~~Glll~~~~~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~--~~~~~vy~ 170 (279)
+++.+|.+.+..+.. ...+.++||.|++|..+|+++........ ...+ +...|++...... ...+++|+
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~-~~~~----~~iYv~GG~~~~~~~~~~v~~yd 412 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCV-VNVN----NLIYVIGGISKNDELLKTVECFS 412 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceE-EEEC----CEEEEECCcCCCCcccceEEEEe
Confidence 344566666655321 34578999999999999988754322221 1111 3333333221111 45789999
Q ss_pred CCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEecC---------CeEEEEecCCCeEEEEecCCCCCCCCCCeeE
Q 036099 171 SETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQ---------GTIVCYNIEAPTEVEIVEVPDENYPYGRGVI 241 (279)
Q Consensus 171 s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~---------~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l 241 (279)
..+++|+..... |... ....++.++ |.+|.+++. ..+..||+.+++|+.+..+|.. .....+
T Consensus 413 ~~t~~W~~~~~~--p~~r---~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---r~~~~~ 483 (534)
T PHA03098 413 LNTNKWSKGSPL--PISH---YGGCAIYHD-GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP---RINASL 483 (534)
T ss_pred CCCCeeeecCCC--Cccc---cCceEEEEC-CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc---cccceE
Confidence 999999988665 3211 233567778 999999842 2489999999999998444432 122344
Q ss_pred EeeCCeEEEEEeCCC---eEEEEEecc
Q 036099 242 ELCKGVLNYANRNES---KLLIWLFDD 265 (279)
Q Consensus 242 ~~~~G~L~~~~~~~~---~~~vW~l~~ 265 (279)
+..+|+|++++.... .-.|+..+.
T Consensus 484 ~~~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 484 CIFNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EEECCEEEEEcCCcCCcccceeEEEeC
Confidence 556999999986541 224666653
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=98.58 E-value=3.1e-06 Score=76.36 Aligned_cols=143 Identities=10% Similarity=-0.013 Sum_probs=93.2
Q ss_pred EeeccCcEEEEeeec-CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCC
Q 036099 96 LFDSCNGLILLGSSL-REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETK 174 (279)
Q Consensus 96 ~~~s~~Glll~~~~~-~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~ 174 (279)
..+..+|.+.+..+. ....+..+||.+++|..+|+++...... ....++ +.-.|++... +....+++|+++++
T Consensus 313 ~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~~~~----g~IYviGG~~-~~~~~ve~ydp~~~ 386 (480)
T PHA02790 313 SGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVASIN----NVIYVIGGHS-ETDTTTEYLLPNHD 386 (480)
T ss_pred eEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEEEEC----CEEEEecCcC-CCCccEEEEeCCCC
Confidence 344567777666532 2245678999999999999987543322 222222 2223333221 12356899999999
Q ss_pred CccccccCCCCCceeeeeccCeEEEeCCeEEEEecCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeC
Q 036099 175 TWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRN 254 (279)
Q Consensus 175 ~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~ 254 (279)
+|...+....| . .....+.++ |++|.+++ ..-.||+.+++|+.+.++|.. .....++..+|+|++++..
T Consensus 387 ~W~~~~~m~~~--r---~~~~~~~~~-~~IYv~GG--~~e~ydp~~~~W~~~~~m~~~---r~~~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 387 QWQFGPSTYYP--H---YKSCALVFG-RRLFLVGR--NAEFYCESSNTWTLIDDPIYP---RDNPELIIVDNKLLLIGGF 455 (480)
T ss_pred EEEeCCCCCCc--c---ccceEEEEC-CEEEEECC--ceEEecCCCCcEeEcCCCCCC---ccccEEEEECCEEEEECCc
Confidence 99988665221 1 223556788 99999984 467899999999998444432 2334566789999999975
Q ss_pred C
Q 036099 255 E 255 (279)
Q Consensus 255 ~ 255 (279)
.
T Consensus 456 ~ 456 (480)
T PHA02790 456 Y 456 (480)
T ss_pred C
Confidence 3
No 15
>PLN02153 epithiospecifier protein
Probab=98.58 E-value=4.5e-06 Score=72.07 Aligned_cols=158 Identities=9% Similarity=0.051 Sum_probs=92.1
Q ss_pred eeccCcEEEEeeec----CCeeEEEEcCCCccccccCCCC-----ccCCCcccEEEecCCCCCceEEEEEEecc------
Q 036099 97 FDSCNGLILLGSSL----REHRYYVCNPLTKQCVAIPKAR-----ERVLESAPALAFDPRDSSHYKIIRFVRAR------ 161 (279)
Q Consensus 97 ~~s~~Glll~~~~~----~~~~~~v~NP~T~~~~~lP~~~-----~~~~~~~~~lg~d~~~~~~ykvv~~~~~~------ 161 (279)
+++.++.|.+..+. ....++++||.|++|..++++. ..+... ..... .+...|++.....
T Consensus 81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~--~~~~~---~~~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFH--SMASD---ENHVYVFGGVSKGGLMKTP 155 (341)
T ss_pred EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceee--EEEEE---CCEEEEECCccCCCccCCC
Confidence 44456665554421 1246889999999999987652 111111 11111 1222333322211
Q ss_pred -ccceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec--------------CCeEEEEecCCCeEEEE
Q 036099 162 -MVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD--------------QGTIVCYNIEAPTEVEI 226 (279)
Q Consensus 162 -~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~--------------~~~i~~fD~~~~~~~~i 226 (279)
....+++|+.++++|..++....+ .........+.++ |++|.++. ...+.+||+.+++|+.+
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~~~~--~~~r~~~~~~~~~-~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~ 232 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDPGEN--FEKRGGAGFAVVQ-GKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEV 232 (341)
T ss_pred cccceEEEEECCCCeEeeCCCCCCC--CCCCCcceEEEEC-CeEEEEeccccccccCCccceecCceEEEEcCCCcEEec
Confidence 023689999999999987653211 1112223456788 99999852 24689999999999998
Q ss_pred ecC----CCCCCCCCCeeEEeeCCeEEEEEeCC----------C--eEEEEEeccC
Q 036099 227 VEV----PDENYPYGRGVIELCKGVLNYANRNE----------S--KLLIWLFDDR 266 (279)
Q Consensus 227 ~~~----P~~~~~~~~~~l~~~~G~L~~~~~~~----------~--~~~vW~l~~~ 266 (279)
.. |.. ......+..+++|++++... . .-+||.++..
T Consensus 233 -~~~g~~P~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~ 284 (341)
T PLN02153 233 -ETTGAKPSA---RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE 284 (341)
T ss_pred -cccCCCCCC---cceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC
Confidence 42 321 12233455689999998742 1 1268888753
No 16
>PHA03098 kelch-like protein; Provisional
Probab=98.57 E-value=3.3e-06 Score=77.41 Aligned_cols=128 Identities=12% Similarity=0.110 Sum_probs=84.3
Q ss_pred eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc-ccceEEEEeCCCCCccccccCCCCCceeee
Q 036099 113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR-MVSEAEIFSSETKTWINCKLNLKPPGHILF 191 (279)
Q Consensus 113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~-~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~ 191 (279)
..++.+||.|++|..+|+++..+...... ..+ +.-.|++..... ....+++|+..+++|+..+.. |.. .
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~----~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l--p~~---r 380 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFN----NRIYVIGGIYNSISLNTVESWKPGESKWREEPPL--IFP---R 380 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceEE-EEC----CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc--CcC---C
Confidence 36889999999999999887533322211 111 222233322111 155689999999999987665 321 1
Q ss_pred eccCeEEEeCCeEEEEec-------CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeC
Q 036099 192 FVMRSVYSRGGILYSITD-------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRN 254 (279)
Q Consensus 192 ~~~~~v~~~~g~ly~l~~-------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~ 254 (279)
.....+.++ |.+|.+++ ...+..||+.+++|+.+.++|... .....+..+|+|++++..
T Consensus 381 ~~~~~~~~~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r---~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 381 YNPCVVNVN-NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH---YGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred ccceEEEEC-CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc---cCceEEEECCEEEEECCc
Confidence 233557788 99999984 156899999999999984455432 223455678999999864
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.57 E-value=6.1e-06 Score=71.41 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=92.0
Q ss_pred ccCcEEEEeeecCCeeEEEEcC--CCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEec-c------ccceEEEE
Q 036099 99 SCNGLILLGSSLREHRYYVCNP--LTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRA-R------MVSEAEIF 169 (279)
Q Consensus 99 s~~Glll~~~~~~~~~~~v~NP--~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~-~------~~~~~~vy 169 (279)
..++-|.+........++++|+ .+++|..+|+++...+........+ +.-.|+.-... . ....++.|
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~----~~iYv~GG~~~~~~~~~~~~~~~v~~Y 90 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID----GKLYVFGGIGKANSEGSPQVFDDVYRY 90 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEEC----CEEEEEeCCCCCCCCCcceecccEEEE
Confidence 4456665554333466788885 6788999998863212111111112 22233332211 0 13468999
Q ss_pred eCCCCCccccccCCCCCceeeeeccCeE-EEeCCeEEEEecC--------------------------------------
Q 036099 170 SSETKTWINCKLNLKPPGHILFFVMRSV-YSRGGILYSITDQ-------------------------------------- 210 (279)
Q Consensus 170 ~s~~~~W~~~~~~~~p~~~~~~~~~~~v-~~~~g~ly~l~~~-------------------------------------- 210 (279)
++.+++|+...... |.. ......+ .++ |++|.++..
T Consensus 91 d~~~~~W~~~~~~~-p~~---~~~~~~~~~~~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (346)
T TIGR03547 91 DPKKNSWQKLDTRS-PVG---LLGASGFSLHN-GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF 165 (346)
T ss_pred ECCCCEEecCCCCC-CCc---ccceeEEEEeC-CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence 99999999886321 211 1112223 578 999999842
Q ss_pred --CeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCC----CeEEEEEec
Q 036099 211 --GTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNE----SKLLIWLFD 264 (279)
Q Consensus 211 --~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~----~~~~vW~l~ 264 (279)
..+..||+.+++|+.+.++|... .....++..+|+|+++.... ...++|..+
T Consensus 166 ~~~~v~~YDp~t~~W~~~~~~p~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~ 223 (346)
T TIGR03547 166 WNKNVLSYDPSTNQWRNLGENPFLG--TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYL 223 (346)
T ss_pred ccceEEEEECCCCceeECccCCCCc--CCCceEEEECCEEEEEeeeeCCCccchheEEEE
Confidence 46899999999999984555321 22345667799999998642 234456544
No 18
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.55 E-value=3e-06 Score=77.66 Aligned_cols=156 Identities=10% Similarity=0.056 Sum_probs=104.1
Q ss_pred CCceEeeccCcEEEEeeecC----CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEe-cc-ccce
Q 036099 92 FPYKLFDSCNGLILLGSSLR----EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVR-AR-MVSE 165 (279)
Q Consensus 92 ~~~~~~~s~~Glll~~~~~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~-~~-~~~~ 165 (279)
+...-+++++|.|....+.+ ...+-.++|.|.+|..++++.. ...++|.-... +.-.+++... .. ....
T Consensus 371 R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~----~r~~~gv~~~~-g~iYi~GG~~~~~~~l~s 445 (571)
T KOG4441|consen 371 RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT----RRSGHGVAVLG-GKLYIIGGGDGSSNCLNS 445 (571)
T ss_pred cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc----ceeeeEEEEEC-CEEEEEcCcCCCccccce
Confidence 34456677788887766322 3447799999999999998865 22233332222 3323333222 12 2578
Q ss_pred EEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec------CCeEEEEecCCCeEEEEecCCCCCCCCCCe
Q 036099 166 AEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD------QGTIVCYNIEAPTEVEIVEVPDENYPYGRG 239 (279)
Q Consensus 166 ~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~ 239 (279)
++.|++.+++|+..+.+..+ ......+.+| |.+|.+++ ...+-+||+.+++|+.+.+.+.. ....
T Consensus 446 ve~YDP~t~~W~~~~~M~~~-----R~~~g~a~~~-~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~---rs~~ 516 (571)
T KOG4441|consen 446 VECYDPETNTWTLIAPMNTR-----RSGFGVAVLN-GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP---RSAV 516 (571)
T ss_pred EEEEcCCCCceeecCCcccc-----cccceEEEEC-CEEEEECCccCCCccceEEEEcCCCCceeEcccCccc---cccc
Confidence 99999999999999877432 1223478888 99999995 33488899999999998333332 3345
Q ss_pred eEEeeCCeEEEEEeCC-----CeEEEE
Q 036099 240 VIELCKGVLNYANRNE-----SKLLIW 261 (279)
Q Consensus 240 ~l~~~~G~L~~~~~~~-----~~~~vW 261 (279)
.++..+|+|++++..+ ..++.|
T Consensus 517 g~~~~~~~ly~vGG~~~~~~l~~ve~y 543 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDGNNNLNTVECY 543 (571)
T ss_pred cEEEECCEEEEEecccCccccceeEEc
Confidence 5677899999999865 455555
No 19
>PLN02193 nitrile-specifier protein
Probab=98.49 E-value=1.7e-05 Score=71.48 Aligned_cols=169 Identities=8% Similarity=0.022 Sum_probs=97.7
Q ss_pred eeccCcEEEEeeec----CCeeEEEEcCCCccccccCCCC---ccCCCcccEEEecCCCCCceEEEEEEecc-ccceEEE
Q 036099 97 FDSCNGLILLGSSL----REHRYYVCNPLTKQCVAIPKAR---ERVLESAPALAFDPRDSSHYKIIRFVRAR-MVSEAEI 168 (279)
Q Consensus 97 ~~s~~Glll~~~~~----~~~~~~v~NP~T~~~~~lP~~~---~~~~~~~~~lg~d~~~~~~ykvv~~~~~~-~~~~~~v 168 (279)
++..++.|.+.... ..+.++++||.|++|..++++. ..+...... ..+ +...|+.-.... ....+++
T Consensus 224 ~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~----~~iYv~GG~~~~~~~~~~~~ 298 (470)
T PLN02193 224 MVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADE----ENVYVFGGVSATARLKTLDS 298 (470)
T ss_pred EEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EEC----CEEEEECCCCCCCCcceEEE
Confidence 34456666554421 2357899999999999987752 211111111 111 222222222111 1456899
Q ss_pred EeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec-----CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEe
Q 036099 169 FSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD-----QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIEL 243 (279)
Q Consensus 169 y~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~-----~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~ 243 (279)
|+..+++|........ ..........+.++ |++|.++. ...+.+||+.+++|+.+...+..+........+.
T Consensus 299 yd~~t~~W~~~~~~~~--~~~~R~~~~~~~~~-gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~ 375 (470)
T PLN02193 299 YNIVDKKWFHCSTPGD--SFSIRGGAGLEVVQ-GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA 375 (470)
T ss_pred EECCCCEEEeCCCCCC--CCCCCCCcEEEEEC-CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE
Confidence 9999999997754210 01111233456778 99999873 3679999999999999832211111122234456
Q ss_pred eCCeEEEEEeCC----------CeE--EEEEeccCCCCCccccccc
Q 036099 244 CKGVLNYANRNE----------SKL--LIWLFDDRHHNNSHSGSKA 277 (279)
Q Consensus 244 ~~G~L~~~~~~~----------~~~--~vW~l~~~~~~~~w~w~k~ 277 (279)
.+++|+++.... ..+ ++|.++-. ...|+++
T Consensus 376 ~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~----t~~W~~~ 417 (470)
T PLN02193 376 VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE----TLQWERL 417 (470)
T ss_pred ECCEEEEECCccCCccccccCccceeccEEEEEcC----cCEEEEc
Confidence 689999998742 112 48888753 3466665
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=98.41 E-value=8.9e-06 Score=73.43 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=88.4
Q ss_pred cCcEEEEeeec----CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCC
Q 036099 100 CNGLILLGSSL----REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKT 175 (279)
Q Consensus 100 ~~Glll~~~~~----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~ 175 (279)
.++.+.+..+. ....+..+||.+++|..+|+++..+.... ....+ +.-.+++.. +....++.|+..+++
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v~~~----~~iYviGG~--~~~~sve~ydp~~n~ 342 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GVPAN----NKLYVVGGL--PNPTSVERWFHGDAA 342 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EEEEC----CEEEEECCc--CCCCceEEEECCCCe
Confidence 45555554421 12457789999999999999875433221 11111 222333322 123468999999999
Q ss_pred ccccccCCCCCceeeeeccCeEEEeCCeEEEEec----CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEE
Q 036099 176 WINCKLNLKPPGHILFFVMRSVYSRGGILYSITD----QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYA 251 (279)
Q Consensus 176 W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~----~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~ 251 (279)
|...+..+.| ......+.++ |++|.+++ ...+-.||+.+++|+.+.++|.. ......+..+|+|+++
T Consensus 343 W~~~~~l~~~-----r~~~~~~~~~-g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~---r~~~~~~~~~~~IYv~ 413 (480)
T PHA02790 343 WVNMPSLLKP-----RCNPAVASIN-NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP---HYKSCALVFGRRLFLV 413 (480)
T ss_pred EEECCCCCCC-----CcccEEEEEC-CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc---cccceEEEECCEEEEE
Confidence 9988765221 1234667888 99999984 24577899999999998334332 2234556789999998
Q ss_pred Ee
Q 036099 252 NR 253 (279)
Q Consensus 252 ~~ 253 (279)
+.
T Consensus 414 GG 415 (480)
T PHA02790 414 GR 415 (480)
T ss_pred CC
Confidence 74
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.39 E-value=4.8e-05 Score=66.62 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=98.0
Q ss_pred eeccCcEEEEeeecCCeeEEEEcCC--CccccccCCCCccCCCcccEEEecCCCCCceEEEEEEec-c------ccceEE
Q 036099 97 FDSCNGLILLGSSLREHRYYVCNPL--TKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRA-R------MVSEAE 167 (279)
Q Consensus 97 ~~s~~Glll~~~~~~~~~~~v~NP~--T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~-~------~~~~~~ 167 (279)
.+..++-|.+........++++++. +++|..+|+++...+........+ +...|++.... . ....++
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~----~~IYV~GG~~~~~~~~~~~~~~~v~ 109 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFID----GKLYVFGGIGKTNSEGSPQVFDDVY 109 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEEC----CEEEEEcCCCCCCCCCceeEcccEE
Confidence 3445666666553344567888875 578999987753222111111111 22333332211 0 034689
Q ss_pred EEeCCCCCccccccCCCCCceeeeeccCeEE-EeCCeEEEEecC------------------------------------
Q 036099 168 IFSSETKTWINCKLNLKPPGHILFFVMRSVY-SRGGILYSITDQ------------------------------------ 210 (279)
Q Consensus 168 vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~-~~~g~ly~l~~~------------------------------------ 210 (279)
+|+..+++|+...... |.. .....++. .+ |++|.++..
T Consensus 110 ~YD~~~n~W~~~~~~~-p~~---~~~~~~~~~~~-~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (376)
T PRK14131 110 KYDPKTNSWQKLDTRS-PVG---LAGHVAVSLHN-GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED 184 (376)
T ss_pred EEeCCCCEEEeCCCCC-CCc---ccceEEEEeeC-CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence 9999999999886421 211 11223344 67 999999842
Q ss_pred ----CeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCC----CeEEEEEeccCCCCCcccccccC
Q 036099 211 ----GTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNE----SKLLIWLFDDRHHNNSHSGSKAA 278 (279)
Q Consensus 211 ----~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~----~~~~vW~l~~~~~~~~w~w~k~~ 278 (279)
..+..||+.+++|+.+.++|... .....++..+++|+++.... ...++|..+-.. +...|++++
T Consensus 185 ~~~~~~v~~YD~~t~~W~~~~~~p~~~--~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~--~~~~W~~~~ 256 (376)
T PRK14131 185 YFFNKEVLSYDPSTNQWKNAGESPFLG--TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG--NNLKWQKLP 256 (376)
T ss_pred cCcCceEEEEECCCCeeeECCcCCCCC--CCcceEEEECCEEEEEeeeECCCcCChhheEEEecC--CCcceeecC
Confidence 46999999999999984455321 22345566789999998642 345566654211 223566554
No 22
>PLN02193 nitrile-specifier protein
Probab=98.30 E-value=2.5e-05 Score=70.38 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=88.4
Q ss_pred eeEEEEcCCCccccccCCCCccCC--CcccEE-EecCCCCCceEEEEEEec-cccceEEEEeCCCCCccccccCCC-CCc
Q 036099 113 HRYYVCNPLTKQCVAIPKARERVL--ESAPAL-AFDPRDSSHYKIIRFVRA-RMVSEAEIFSSETKTWINCKLNLK-PPG 187 (279)
Q Consensus 113 ~~~~v~NP~T~~~~~lP~~~~~~~--~~~~~l-g~d~~~~~~ykvv~~~~~-~~~~~~~vy~s~~~~W~~~~~~~~-p~~ 187 (279)
..++++|+.+.+|..+|+...... .....+ .++ +.-.|+.-... .....+++|++.+++|+.+..... |.
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~----~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~- 267 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG----STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT- 267 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC----CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCC-
Confidence 358899999999998765321111 111111 111 21222221111 114568999999999998755311 11
Q ss_pred eeeeeccCeEEEeCCeEEEEec------CCeEEEEecCCCeEEEEecCCCCC-CCCCCeeEEeeCCeEEEEEeCC--CeE
Q 036099 188 HILFFVMRSVYSRGGILYSITD------QGTIVCYNIEAPTEVEIVEVPDEN-YPYGRGVIELCKGVLNYANRNE--SKL 258 (279)
Q Consensus 188 ~~~~~~~~~v~~~~g~ly~l~~------~~~i~~fD~~~~~~~~i~~~P~~~-~~~~~~~l~~~~G~L~~~~~~~--~~~ 258 (279)
.......+..+ +++|.++. ...+.+||+.+++|+.+ ..|... .......++..+|+++++.... ..-
T Consensus 268 --~R~~h~~~~~~-~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~ 343 (470)
T PLN02193 268 --PRSFHSMAADE-ENVYVFGGVSATARLKTLDSYNIVDKKWFHC-STPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVD 343 (470)
T ss_pred --CccceEEEEEC-CEEEEECCCCCCCCcceEEEEECCCCEEEeC-CCCCCCCCCCCCcEEEEECCcEEEEECCCCCccC
Confidence 11223456678 99999983 24578999999999998 654321 1122344556789999887643 223
Q ss_pred EEEEeccCCCCCccccccc
Q 036099 259 LIWLFDDRHHNNSHSGSKA 277 (279)
Q Consensus 259 ~vW~l~~~~~~~~w~w~k~ 277 (279)
+||+++... -.|+++
T Consensus 344 dv~~yD~~t----~~W~~~ 358 (470)
T PLN02193 344 DVHYYDPVQ----DKWTQV 358 (470)
T ss_pred ceEEEECCC----CEEEEe
Confidence 467766433 246655
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.24 E-value=0.00011 Score=62.87 Aligned_cols=133 Identities=12% Similarity=0.052 Sum_probs=79.6
Q ss_pred eeEEEEcCCCccc----cccCCCCccCCCcccEEEecCCCCCceEEEEEEec-cccceEEEEeCCCCCccccccCCCCCc
Q 036099 113 HRYYVCNPLTKQC----VAIPKARERVLESAPALAFDPRDSSHYKIIRFVRA-RMVSEAEIFSSETKTWINCKLNLKPPG 187 (279)
Q Consensus 113 ~~~~v~NP~T~~~----~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~-~~~~~~~vy~s~~~~W~~~~~~~~p~~ 187 (279)
..++.+|+.+++| ..+|+++......... .++ +.-.|+.-... .....+++|+.++++|...+.. |..
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~-~~~----~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~ 160 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSAC-YKD----GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDF--PGE 160 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEE-EEC----CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCC--CCC
Confidence 5688999999987 6778776543322221 111 22222222211 1145789999999999988654 221
Q ss_pred eeeeeccCeEEEeCCeEEEEecC-----CeEEEEecCCCeEEEEecCCCC--CCC-CCCeeEEeeCCeEEEEEeCC
Q 036099 188 HILFFVMRSVYSRGGILYSITDQ-----GTIVCYNIEAPTEVEIVEVPDE--NYP-YGRGVIELCKGVLNYANRNE 255 (279)
Q Consensus 188 ~~~~~~~~~v~~~~g~ly~l~~~-----~~i~~fD~~~~~~~~i~~~P~~--~~~-~~~~~l~~~~G~L~~~~~~~ 255 (279)
. ......+.++ |++|.++.. ..+.+||+.+++|+.+...+.. +.. .....+...+++|++++...
T Consensus 161 ~--r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 161 P--RVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred C--CCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 1 1223446788 999999842 2467999999999998322211 111 11233444578999888643
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.16 E-value=0.0003 Score=60.84 Aligned_cols=135 Identities=10% Similarity=0.020 Sum_probs=81.7
Q ss_pred eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc--cceEEEEe--CCCCCccccccCCCCCce
Q 036099 113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM--VSEAEIFS--SETKTWINCKLNLKPPGH 188 (279)
Q Consensus 113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~--~~~~~vy~--s~~~~W~~~~~~~~p~~~ 188 (279)
..+.++||.|++|..+++++...........++ +...|+....... ...+++|+ .++++|......+.|...
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~ 243 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKG----NKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSS 243 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEEC----CEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCC
Confidence 568899999999999988764222221122222 3334444332211 22345555 567799988766322100
Q ss_pred --eeeeccCeEEEeCCeEEEEecC-----------------------CeEEEEecCCCeEEEEecCCCCCCCCCCeeEEe
Q 036099 189 --ILFFVMRSVYSRGGILYSITDQ-----------------------GTIVCYNIEAPTEVEIVEVPDENYPYGRGVIEL 243 (279)
Q Consensus 189 --~~~~~~~~v~~~~g~ly~l~~~-----------------------~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~ 243 (279)
.......++.++ |.+|.++.. ..+-+||+.+++|+.+.++|... .....+.
T Consensus 244 ~~~~~~~~~a~~~~-~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~---~~~~~~~ 319 (346)
T TIGR03547 244 SQEGLAGAFAGISN-GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL---AYGVSVS 319 (346)
T ss_pred ccccccEEeeeEEC-CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc---eeeEEEE
Confidence 001122356788 999999842 14678999999999985666532 2234566
Q ss_pred eCCeEEEEEeCC
Q 036099 244 CKGVLNYANRNE 255 (279)
Q Consensus 244 ~~G~L~~~~~~~ 255 (279)
.+|+|++++...
T Consensus 320 ~~~~iyv~GG~~ 331 (346)
T TIGR03547 320 WNNGVLLIGGEN 331 (346)
T ss_pred cCCEEEEEeccC
Confidence 799999999753
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.11 E-value=0.00033 Score=61.35 Aligned_cols=147 Identities=12% Similarity=0.021 Sum_probs=86.4
Q ss_pred eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc----cceEEEEeCCCCCccccccCCCCCce
Q 036099 113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM----VSEAEIFSSETKTWINCKLNLKPPGH 188 (279)
Q Consensus 113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~ 188 (279)
..+.++||.|++|..+++++............+ +.-.|+....... ......|+.++++|......+.|...
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~----~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 264 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKG----NKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG 264 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEEC----CEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence 468999999999999987764222222222222 2233343322111 22233457788999988765322110
Q ss_pred e---eeeccCeEEEeCCeEEEEecCC-----------------------eEEEEecCCCeEEEEecCCCCCCCCCCeeEE
Q 036099 189 I---LFFVMRSVYSRGGILYSITDQG-----------------------TIVCYNIEAPTEVEIVEVPDENYPYGRGVIE 242 (279)
Q Consensus 189 ~---~~~~~~~v~~~~g~ly~l~~~~-----------------------~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~ 242 (279)
. ......++.++ |++|.++... .+-+||+.+++|+.+..+|... .....+
T Consensus 265 ~~~~~~~~~~a~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r---~~~~av 340 (376)
T PRK14131 265 SSQEGVAGAFAGYSN-GVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL---AYGVSV 340 (376)
T ss_pred CcCCccceEeceeEC-CEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc---cceEEE
Confidence 0 01112256788 9999998421 2447999999999885566532 223456
Q ss_pred eeCCeEEEEEeCC----CeEEEEEeccCC
Q 036099 243 LCKGVLNYANRNE----SKLLIWLFDDRH 267 (279)
Q Consensus 243 ~~~G~L~~~~~~~----~~~~vW~l~~~~ 267 (279)
..+|+|++++... ..-.|+.++..+
T Consensus 341 ~~~~~iyv~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 341 SWNNGVLLIGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred EeCCEEEEEcCCCCCCcEeeeEEEEEEcC
Confidence 6799999999753 233577776444
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.97 E-value=0.0001 Score=59.33 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=98.3
Q ss_pred eccCcEEEEeeecC-----CeeEEEEcCCCcccccc------CCCCccCCCcccEEEecCCCCCceEEEEEEecc-c--c
Q 036099 98 DSCNGLILLGSSLR-----EHRYYVCNPLTKQCVAI------PKARERVLESAPALAFDPRDSSHYKIIRFVRAR-M--V 163 (279)
Q Consensus 98 ~s~~Glll~~~~~~-----~~~~~v~NP~T~~~~~l------P~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~-~--~ 163 (279)
...++-+++....+ .+-++-++|-|.+|... |... .--....+| ....|+..+.++ + .
T Consensus 85 V~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaR--DGHsAcV~g------n~MyiFGGye~~a~~FS 156 (392)
T KOG4693|consen 85 VEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGAR--DGHSACVWG------NQMYIFGGYEEDAQRFS 156 (392)
T ss_pred EEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCcc--CCceeeEEC------cEEEEecChHHHHHhhh
Confidence 33455566655322 24478899999999862 2221 111222221 223333333322 1 5
Q ss_pred ceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec---------------CCeEEEEecCCCeEEEEec
Q 036099 164 SEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD---------------QGTIVCYNIEAPTEVEIVE 228 (279)
Q Consensus 164 ~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~---------------~~~i~~fD~~~~~~~~i~~ 228 (279)
..+++++..|-+|+.+...-.|. +...+..++..+ |.+|-.+. ...|++||+.|+.|..-.+
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~Pp--rwRDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~ 233 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPP--RWRDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE 233 (392)
T ss_pred ccceeEeccceeeeehhccCCCc--hhhhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC
Confidence 56788899999999997653343 334456778888 99999882 4789999999999987512
Q ss_pred CCCCCCCCCCeeEEeeCCeEEEEEeCCCeE-----EEEEeccCCCCCccccccc
Q 036099 229 VPDENYPYGRGVIELCKGVLNYANRNESKL-----LIWLFDDRHHNNSHSGSKA 277 (279)
Q Consensus 229 ~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~-----~vW~l~~~~~~~~w~w~k~ 277 (279)
-|..+........-..+|++++++.....+ ++|.++. .+-+|++|
T Consensus 234 ~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP----~t~~W~~I 283 (392)
T KOG4693|consen 234 NTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP----KTSMWSVI 283 (392)
T ss_pred CCcCCCcccccceEEEcceEEEecccchhhhhhhcceeeccc----ccchheee
Confidence 221111112234456799999999875333 4666653 23467665
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.94 E-value=0.00036 Score=59.61 Aligned_cols=158 Identities=10% Similarity=0.068 Sum_probs=88.4
Q ss_pred eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc--------cceEEEEeCCCCCccccccCCC
Q 036099 113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM--------VSEAEIFSSETKTWINCKLNLK 184 (279)
Q Consensus 113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~--------~~~~~vy~s~~~~W~~~~~~~~ 184 (279)
+.+|+||.-+.+|..+-.+......+.......+. + +-.+....... =....+|+..+++|..+...-.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s--~-~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS--N-ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEecc--C-eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 46889999999999863322222222222222221 2 11111111110 2346789999999998865322
Q ss_pred CCceeeeeccCeEEEeCCeEEEEe----------cCCeEEEEecCCCeEEEEecCCCC-CCCCCCeeEEee-CCeEEEEE
Q 036099 185 PPGHILFFVMRSVYSRGGILYSIT----------DQGTIVCYNIEAPTEVEIVEVPDE-NYPYGRGVIELC-KGVLNYAN 252 (279)
Q Consensus 185 p~~~~~~~~~~~v~~~~g~ly~l~----------~~~~i~~fD~~~~~~~~i~~~P~~-~~~~~~~~l~~~-~G~L~~~~ 252 (279)
|.. ...+.-|... ..|.-.+ .-+-+.+||+++=+|+.+ ..+.. +....++++... +|.+++-+
T Consensus 175 PS~---RSGHRMvawK-~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kl-epsga~PtpRSGcq~~vtpqg~i~vyG 249 (521)
T KOG1230|consen 175 PSP---RSGHRMVAWK-RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKL-EPSGAGPTPRSGCQFSVTPQGGIVVYG 249 (521)
T ss_pred CCC---CccceeEEee-eeEEEEcceecCCCceEEeeeeEEEeccceeeeec-cCCCCCCCCCCcceEEecCCCcEEEEc
Confidence 321 1111222222 2222222 235689999999999999 65442 333455666666 78887776
Q ss_pred eCC------------CeEEEEEeccCC-CCCcccccccC
Q 036099 253 RNE------------SKLLIWLFDDRH-HNNSHSGSKAA 278 (279)
Q Consensus 253 ~~~------------~~~~vW~l~~~~-~~~~w~w~k~~ 278 (279)
... .+-++|.|+... .+..|.|+|+-
T Consensus 250 GYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvk 288 (521)
T KOG1230|consen 250 GYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVK 288 (521)
T ss_pred chhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeecc
Confidence 531 456699998544 34479999974
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=5.3e-05 Score=62.27 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCCC
Q 036099 3 QISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR 44 (279)
Q Consensus 3 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~ 44 (279)
...||||++..||+.|+.++|.++..|||+|+++.++.....
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~ 139 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ 139 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee
Confidence 468999999999999999999999999999999998877543
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.63 E-value=0.0012 Score=55.16 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=38.0
Q ss_pred CCCCC----HHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCCC
Q 036099 3 QISLS----EDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR 44 (279)
Q Consensus 3 ~~~LP----~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~ 44 (279)
+..|| +++.+.||+.|...+|..+..|||+|+++++++-..+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 35789 9999999999999999999999999999999987533
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.07 E-value=0.024 Score=46.13 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=77.9
Q ss_pred CeeEEEEcCCCccccccCCCC----ccCCCcccEEEecCCCCCceEEEEEEecc--------c--cceEEEEeCCCCCcc
Q 036099 112 EHRYYVCNPLTKQCVAIPKAR----ERVLESAPALAFDPRDSSHYKIIRFVRAR--------M--VSEAEIFSSETKTWI 177 (279)
Q Consensus 112 ~~~~~v~NP~T~~~~~lP~~~----~~~~~~~~~lg~d~~~~~~ykvv~~~~~~--------~--~~~~~vy~s~~~~W~ 177 (279)
+....+.|-.|.+|+.+-... .+..-....+ | +...|+....+. + .-.+.+++.+|+.|.
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~--~----~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~ 229 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVI--D----GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWT 229 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhhhhhc--c----ceEEEeccccccCCCccchhhhhcceeEEEeccccccc
Confidence 456789999999999874322 2111111111 1 111222221111 1 556888999999997
Q ss_pred ccccCC-CCCceeeeeccCeEEEeCCeEEEEec--------CCeEEEEecCCCeEEEEecCCCC-CCCCCCeeEEeeCCe
Q 036099 178 NCKLNL-KPPGHILFFVMRSVYSRGGILYSITD--------QGTIVCYNIEAPTEVEIVEVPDE-NYPYGRGVIELCKGV 247 (279)
Q Consensus 178 ~~~~~~-~p~~~~~~~~~~~v~~~~g~ly~l~~--------~~~i~~fD~~~~~~~~i~~~P~~-~~~~~~~~l~~~~G~ 247 (279)
..+... .|... ...+....| |++|..+. =..+..||+.+..|..| ..-.. +.....-+-+.++|+
T Consensus 230 r~p~~~~~P~GR---RSHS~fvYn-g~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I-~~~Gk~P~aRRRqC~~v~g~k 304 (392)
T KOG4693|consen 230 RTPENTMKPGGR---RSHSTFVYN-GKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVI-SVRGKYPSARRRQCSVVSGGK 304 (392)
T ss_pred cCCCCCcCCCcc---cccceEEEc-ceEEEecccchhhhhhhcceeecccccchheee-eccCCCCCcccceeEEEECCE
Confidence 664331 13222 123455677 99999982 36789999999999999 54322 111222334456899
Q ss_pred EEEEEeC
Q 036099 248 LNYANRN 254 (279)
Q Consensus 248 L~~~~~~ 254 (279)
+++++..
T Consensus 305 v~LFGGT 311 (392)
T KOG4693|consen 305 VYLFGGT 311 (392)
T ss_pred EEEecCC
Confidence 9998864
No 31
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.97 E-value=0.00031 Score=57.98 Aligned_cols=43 Identities=12% Similarity=0.284 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHhcCC-----hhhhHHHhhhhHHHHhhhcCCCCCCc
Q 036099 3 QISLSEDLITEILCRLP-----VKSVTRFKIVSKAWNNLISNVCIPRI 45 (279)
Q Consensus 3 ~~~LP~Dll~eIL~rLP-----~~~l~r~r~VcK~W~~li~~~~F~~~ 45 (279)
+..||||+|.+||.++= ..+|.++++|||.|....++|.|.+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 46799999999998764 59999999999999999999998774
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.59 E-value=0.056 Score=48.99 Aligned_cols=152 Identities=12% Similarity=0.046 Sum_probs=89.8
Q ss_pred eEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc----ccceEEEEeCCCCCccccccCCCCCcee
Q 036099 114 RYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR----MVSEAEIFSSETKTWINCKLNLKPPGHI 189 (279)
Q Consensus 114 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~----~~~~~~vy~s~~~~W~~~~~~~~p~~~~ 189 (279)
.++++|-.+..|.......... ....+...... ++ +++.+.-.. ....++.|+..|++|+.....-.| ..
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~--~~-~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~--P~ 162 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAV--GD-KLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDP--PP 162 (482)
T ss_pred eeEEeecCCcccccccccCCCC-CcccceeEEEE--CC-eEEEEccccCCCCChhheEeccCCCCcEEEecCcCCC--CC
Confidence 4999999998888754432211 11111110110 11 222222111 145789999999999987654221 11
Q ss_pred eeeccCeEEEeCCeEEEEe-------cCCeEEEEecCCCeEEEEecCCCCCC-CCCCeeEEeeCCeEEEEEeCC----Ce
Q 036099 190 LFFVMRSVYSRGGILYSIT-------DQGTIVCYNIEAPTEVEIVEVPDENY-PYGRGVIELCKGVLNYANRNE----SK 257 (279)
Q Consensus 190 ~~~~~~~v~~~~g~ly~l~-------~~~~i~~fD~~~~~~~~i~~~P~~~~-~~~~~~l~~~~G~L~~~~~~~----~~ 257 (279)
....+..+.++ .++|..+ ..+.+.+||+++.+|..+ ....... ......++..+++++++.... .-
T Consensus 163 ~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~-~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l 240 (482)
T KOG0379|consen 163 PRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETSTWSEL-DTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYL 240 (482)
T ss_pred CcccceEEEEC-CEEEEECCccCcccceeeeeeeccccccceec-ccCCCCCCCCCCceEEEECCeEEEEeccccCCcee
Confidence 22344556666 8888888 256899999999999998 7655422 233455666688888887643 22
Q ss_pred EEEEEeccCCCCCccccccc
Q 036099 258 LLIWLFDDRHHNNSHSGSKA 277 (279)
Q Consensus 258 ~~vW~l~~~~~~~~w~w~k~ 277 (279)
=++|.|+-.. |.|.+.
T Consensus 241 ~D~~~ldl~~----~~W~~~ 256 (482)
T KOG0379|consen 241 NDVHILDLST----WEWKLL 256 (482)
T ss_pred cceEeeeccc----ceeeec
Confidence 2378887544 777654
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.28 E-value=0.35 Score=43.89 Aligned_cols=143 Identities=8% Similarity=-0.010 Sum_probs=81.1
Q ss_pred eeEEEEcCCCccccccCCCCcc---CCCcccEEEecCCCCCceEEEEEEecc---ccceEEEEeCCCCCccccccCCCCC
Q 036099 113 HRYYVCNPLTKQCVAIPKARER---VLESAPALAFDPRDSSHYKIIRFVRAR---MVSEAEIFSSETKTWINCKLNLKPP 186 (279)
Q Consensus 113 ~~~~v~NP~T~~~~~lP~~~~~---~~~~~~~lg~d~~~~~~ykvv~~~~~~---~~~~~~vy~s~~~~W~~~~~~~~p~ 186 (279)
..+..+|+.|++|..+.+.... .....+.. + +++.+|.-.... ....++||+.++.+|......-.
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~-~-----g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~-- 210 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATV-V-----GTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE-- 210 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEE-E-----CCEEEEECCccCcccceeeeeeeccccccceecccCCC--
Confidence 4789999999999987544321 11111111 1 223333322221 26679999999999998865421
Q ss_pred ceeeeeccCeEEEeCCeEEEEec-------CCeEEEEecCCCeEEEEecCCCC--CCCCCCeeEEeeCCeEEEEEeCCC-
Q 036099 187 GHILFFVMRSVYSRGGILYSITD-------QGTIVCYNIEAPTEVEIVEVPDE--NYPYGRGVIELCKGVLNYANRNES- 256 (279)
Q Consensus 187 ~~~~~~~~~~v~~~~g~ly~l~~-------~~~i~~fD~~~~~~~~i~~~P~~--~~~~~~~~l~~~~G~L~~~~~~~~- 256 (279)
..........+.++ ++++.+.+ -.-+..||+.+.+|..+ .+.. ........++..+..+++++....
T Consensus 211 ~P~pR~gH~~~~~~-~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~--~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 211 APSPRYGHAMVVVG-NKLLVFGGGDDGDVYLNDVHILDLSTWEWKLL--PTGGDLPSPRSGHSLTVSGDHLLLFGGGTDP 287 (482)
T ss_pred CCCCCCCceEEEEC-CeEEEEeccccCCceecceEeeecccceeeec--cccCCCCCCcceeeeEEECCEEEEEcCCccc
Confidence 11123344556666 67666663 24689999999888854 3222 112222344455666777775542
Q ss_pred ----eEEEEEeccC
Q 036099 257 ----KLLIWLFDDR 266 (279)
Q Consensus 257 ----~~~vW~l~~~ 266 (279)
--++|.|+..
T Consensus 288 ~~~~l~~~~~l~~~ 301 (482)
T KOG0379|consen 288 KQEPLGDLYGLDLE 301 (482)
T ss_pred cccccccccccccc
Confidence 2336766643
No 34
>PF13964 Kelch_6: Kelch motif
Probab=95.89 E-value=0.019 Score=34.28 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=30.1
Q ss_pred cCeEEEeCCeEEEEec-------CCeEEEEecCCCeEEEEecCC
Q 036099 194 MRSVYSRGGILYSITD-------QGTIVCYNIEAPTEVEIVEVP 230 (279)
Q Consensus 194 ~~~v~~~~g~ly~l~~-------~~~i~~fD~~~~~~~~i~~~P 230 (279)
...+.++ |.+|.++. ...+..||+++++|+.++++|
T Consensus 5 ~s~v~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 5 HSAVVVG-GKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred CEEEEEC-CEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 4668889 99999993 367999999999999995555
No 35
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=95.67 E-value=0.069 Score=39.19 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=47.2
Q ss_pred cCCeEEEEecCCC--eEEEEecCCCCCCC-----------CCCeeEEeeCCeEEEEEeCC----------CeEEEEEecc
Q 036099 209 DQGTIVCYNIEAP--TEVEIVEVPDENYP-----------YGRGVIELCKGVLNYANRNE----------SKLLIWLFDD 265 (279)
Q Consensus 209 ~~~~i~~fD~~~~--~~~~i~~~P~~~~~-----------~~~~~l~~~~G~L~~~~~~~----------~~~~vW~l~~ 265 (279)
....|+.+|+..+ .++.| ++|..... .....++..+|+|.++.... .++.+|.|..
T Consensus 4 l~~GIL~CD~~~~~p~l~~v-pLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~ 82 (131)
T PF07762_consen 4 LWRGILFCDVFDDSPVLRFV-PLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKD 82 (131)
T ss_pred CCCCEEEEECCCCCccEEEE-eCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEecc
Confidence 3456888898765 68889 99986211 12267788999999999753 4699999998
Q ss_pred CCCCCcccccc
Q 036099 266 RHHNNSHSGSK 276 (279)
Q Consensus 266 ~~~~~~w~w~k 276 (279)
. ..+.+.|+|
T Consensus 83 ~-~~~~~~W~~ 92 (131)
T PF07762_consen 83 P-EGSSWEWKK 92 (131)
T ss_pred C-CCCCCCEEE
Confidence 6 234567765
No 36
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.55 E-value=0.11 Score=44.93 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=69.0
Q ss_pred eEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec------------CCeEEEEecCCCeEEEEecCCCC
Q 036099 165 EAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD------------QGTIVCYNIEAPTEVEIVEVPDE 232 (279)
Q Consensus 165 ~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~------------~~~i~~fD~~~~~~~~i~~~P~~ 232 (279)
...+|+.++++|+.....-.| .......+|.+--|.||..+. -.-+-.||+.+.+|..+ .++..
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P---~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql-~~~g~ 174 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAP---PPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQL-EFGGG 174 (521)
T ss_pred eeeEEeccccceeEeccCCCc---CCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheee-ccCCC
Confidence 478899999999988653212 222333444444266666662 23577899999999999 99987
Q ss_pred CCCCCCeeEEeeCCeEEEEEeCC----C---eEEEEEeccCCCCCccccccc
Q 036099 233 NYPYGRGVIELCKGVLNYANRNE----S---KLLIWLFDDRHHNNSHSGSKA 277 (279)
Q Consensus 233 ~~~~~~~~l~~~~G~L~~~~~~~----~---~~~vW~l~~~~~~~~w~w~k~ 277 (279)
+....+..|+....+|.+++.-. . -=+||+++- +...|+|+
T Consensus 175 PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdL----dtykW~Kl 222 (521)
T KOG1230|consen 175 PSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDL----DTYKWSKL 222 (521)
T ss_pred CCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEec----cceeeeec
Confidence 66666778888899998888532 1 112555553 23567765
No 37
>PF13964 Kelch_6: Kelch motif
Probab=95.51 E-value=0.029 Score=33.45 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=25.6
Q ss_pred eccCcEEEEeeec-----CCeeEEEEcCCCccccccCCCCc
Q 036099 98 DSCNGLILLGSSL-----REHRYYVCNPLTKQCVAIPKARE 133 (279)
Q Consensus 98 ~s~~Glll~~~~~-----~~~~~~v~NP~T~~~~~lP~~~~ 133 (279)
.+.+|-|.+..+. ....+.++||.|++|..+|+++.
T Consensus 8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 3445555544421 24678999999999999999875
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.41 E-value=1.6 Score=40.13 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCC
Q 036099 3 QISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIP 43 (279)
Q Consensus 3 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~ 43 (279)
+..||.++...||..|+.+++++++.||+.|+.++.+....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence 56899999999999999999999999999999999876643
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.84 E-value=0.074 Score=31.04 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=29.5
Q ss_pred cCeEEEeCCeEEEEec-------CCeEEEEecCCCeEEEEecCC
Q 036099 194 MRSVYSRGGILYSITD-------QGTIVCYNIEAPTEVEIVEVP 230 (279)
Q Consensus 194 ~~~v~~~~g~ly~l~~-------~~~i~~fD~~~~~~~~i~~~P 230 (279)
..++.++ |.+|.+++ ...+..||+.+++|+.++++|
T Consensus 5 ~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVG-NKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEET-TEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEEC-CEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 3567888 99999993 467999999999999985554
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=93.80 E-value=0.19 Score=29.75 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=27.2
Q ss_pred cCeEEEeCCeEEEEec---------CCeEEEEecCCCeEEEE
Q 036099 194 MRSVYSRGGILYSITD---------QGTIVCYNIEAPTEVEI 226 (279)
Q Consensus 194 ~~~v~~~~g~ly~l~~---------~~~i~~fD~~~~~~~~i 226 (279)
..++.++ +++|..+. ...+-.||+++++|+.+
T Consensus 5 hs~~~~~-~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~ 45 (49)
T PF07646_consen 5 HSAVVLD-GKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTEL 45 (49)
T ss_pred eEEEEEC-CEEEEECCcccCCCCcccceeEEEECCCCEEeec
Confidence 4567888 99999983 46789999999999998
No 41
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.46 E-value=3.9 Score=33.96 Aligned_cols=149 Identities=16% Similarity=0.217 Sum_probs=86.8
Q ss_pred ceEeeccCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCC
Q 036099 94 YKLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSET 173 (279)
Q Consensus 94 ~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~ 173 (279)
.-+++.-+|-|-+.. -..+.+..+||.++.-..+|.+..... ..-.++.|+.. . +++.. ...-.+..|+..+
T Consensus 192 yGi~atpdGsvwyas-lagnaiaridp~~~~aev~p~P~~~~~-gsRriwsdpig--~---~witt-wg~g~l~rfdPs~ 263 (353)
T COG4257 192 YGICATPDGSVWYAS-LAGNAIARIDPFAGHAEVVPQPNALKA-GSRRIWSDPIG--R---AWITT-WGTGSLHRFDPSV 263 (353)
T ss_pred cceEECCCCcEEEEe-ccccceEEcccccCCcceecCCCcccc-cccccccCccC--c---EEEec-cCCceeeEeCccc
Confidence 344555566666654 234567789999998888887764222 11233445542 1 22221 1255788899998
Q ss_pred CCccccccCCCCCceeeeeccCeEEEeCCeEEEEe--cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEE
Q 036099 174 KTWINCKLNLKPPGHILFFVMRSVYSRGGILYSIT--DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYA 251 (279)
Q Consensus 174 ~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~--~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~ 251 (279)
.+|++-+- |... ..-..+++++----|+. ..+.|+.||.++++|+++ +.|.... ....|.--.|.+.+.
T Consensus 264 ~sW~eypL---Pgs~---arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~-p~pr~n~--gn~ql~gr~ge~W~~ 334 (353)
T COG4257 264 TSWIEYPL---PGSK---ARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVL-PIPRPNS--GNIQLDGRPGELWFT 334 (353)
T ss_pred ccceeeeC---CCCC---CCcceeeeccCCcEEeeccccCceeecCcccceEEEe-cCCCCCC--CceeccCCCCceeec
Confidence 88876643 2211 01133555543445554 689999999999999999 9987532 233333334555555
Q ss_pred EeCCCeEE
Q 036099 252 NRNESKLL 259 (279)
Q Consensus 252 ~~~~~~~~ 259 (279)
+..-..+.
T Consensus 335 e~gvd~lv 342 (353)
T COG4257 335 EAGVDALV 342 (353)
T ss_pred ccCcceeE
Confidence 44333333
No 42
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.63 E-value=2 Score=35.33 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=58.0
Q ss_pred eccCeEEEeCCeEEEEe-cCCeEEEEecCCCeEE-EEecCCCCCCC---------CCCeeEEeeCCeEEEEEeCC---Ce
Q 036099 192 FVMRSVYSRGGILYSIT-DQGTIVCYNIEAPTEV-EIVEVPDENYP---------YGRGVIELCKGVLNYANRNE---SK 257 (279)
Q Consensus 192 ~~~~~v~~~~g~ly~l~-~~~~i~~fD~~~~~~~-~i~~~P~~~~~---------~~~~~l~~~~G~L~~~~~~~---~~ 257 (279)
....-|..| |.||+-. ....|+.||+.+++.. .. .+|..... .....++..+..|.++.... .+
T Consensus 70 ~GtG~vVYn-gslYY~~~~s~~IvkydL~t~~v~~~~-~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ 147 (250)
T PF02191_consen 70 QGTGHVVYN-GSLYYNKYNSRNIVKYDLTTRSVVARR-ELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN 147 (250)
T ss_pred ccCCeEEEC-CcEEEEecCCceEEEEECcCCcEEEEE-ECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc
Confidence 345567788 9999977 6899999999999988 77 88875322 12366777788888887653 46
Q ss_pred EEEEEeccCCCCCcccc
Q 036099 258 LLIWLFDDRHHNNSHSG 274 (279)
Q Consensus 258 ~~vW~l~~~~~~~~w~w 274 (279)
|.|=.|+...-...-+|
T Consensus 148 ivvskld~~tL~v~~tw 164 (250)
T PF02191_consen 148 IVVSKLDPETLSVEQTW 164 (250)
T ss_pred EEEEeeCcccCceEEEE
Confidence 88888876543333344
No 43
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.31 E-value=6.9 Score=33.87 Aligned_cols=148 Identities=12% Similarity=0.055 Sum_probs=80.8
Q ss_pred eEeeccCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc-----c---ceE
Q 036099 95 KLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM-----V---SEA 166 (279)
Q Consensus 95 ~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~-----~---~~~ 166 (279)
...+-.+.-|+... .....+|+|+.|+....+|.+....... +.+.. . ++ +..+..... . ..+
T Consensus 70 ~F~al~gskIv~~d--~~~~t~vyDt~t~av~~~P~l~~pk~~p-isv~V---G-~~--LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 70 DFFALHGSKIVAVD--QSGRTLVYDTDTRAVATGPRLHSPKRCP-ISVSV---G-DK--LYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred EEEEecCCeEEEEc--CCCCeEEEECCCCeEeccCCCCCCCcce-EEEEe---C-Ce--EEEeeccCccccccCccceeE
Confidence 33333455555554 2356889999999999999876543322 22221 1 22 333332210 0 145
Q ss_pred EEE--e--------CCCCCccccccCCCCCceeee-----eccCeEEEeCCeEEEEe-cCC--eEEEEecCCCeEEEEe-
Q 036099 167 EIF--S--------SETKTWINCKLNLKPPGHILF-----FVMRSVYSRGGILYSIT-DQG--TIVCYNIEAPTEVEIV- 227 (279)
Q Consensus 167 ~vy--~--------s~~~~W~~~~~~~~p~~~~~~-----~~~~~v~~~~g~ly~l~-~~~--~i~~fD~~~~~~~~i~- 227 (279)
|++ + .++++|+..+.. |...... -..-+|. + |.--|+. ... ...+||+++.+|+...
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~P--Pf~~~~~~~~~~i~sYavv-~-g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPPP--PFVRDRRYSDYRITSYAVV-D-GRTIFVSVNGRRWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred EEeccccccccccCCCcceEEcCCCC--CccccCCcccceEEEEEEe-c-CCeEEEEecCCceEEEEEEcCCcceeeccc
Confidence 555 2 334567776553 3222111 2223445 7 6555664 434 7999999999999875
Q ss_pred -cCCCCCCC----CCCeeEEee--C--CeEEEEEeCC
Q 036099 228 -EVPDENYP----YGRGVIELC--K--GVLNYANRNE 255 (279)
Q Consensus 228 -~~P~~~~~----~~~~~l~~~--~--G~L~~~~~~~ 255 (279)
.||..... +-+..++-+ + |.||.+....
T Consensus 217 W~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~ 253 (342)
T PF07893_consen 217 WMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVSS 253 (342)
T ss_pred eecCcCCccEECCCcCeEEEeccCCCCcEEEEEeccc
Confidence 47875322 334555543 2 3777766543
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=91.62 E-value=0.54 Score=27.58 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=20.8
Q ss_pred CeEEEeCCeEEEEec-------CCeEEEEecCCCeEEEEecCC
Q 036099 195 RSVYSRGGILYSITD-------QGTIVCYNIEAPTEVEIVEVP 230 (279)
Q Consensus 195 ~~v~~~~g~ly~l~~-------~~~i~~fD~~~~~~~~i~~~P 230 (279)
.++.++++.+|..+. -..+..||+.+++|+.++++|
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 345553277777772 347889999999999984455
No 45
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.58 E-value=2.5 Score=38.00 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=44.4
Q ss_pred eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEE--eccccceEEEEeCCCCC--ccccccCCCCCce
Q 036099 113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFV--RARMVSEAEIFSSETKT--WINCKLNLKPPGH 188 (279)
Q Consensus 113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~--~~~~~~~~~vy~s~~~~--W~~~~~~~~p~~~ 188 (279)
.++.|||.+|++|.. |....+....-.++||-... -+++.+. .+...+.-+.|.+.... |+..-... |...
T Consensus 57 DELHvYNTatnqWf~-PavrGDiPpgcAA~GfvcdG---trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~-p~nG 131 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCDG---TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKT-PKNG 131 (830)
T ss_pred hhhhhhccccceeec-chhcCCCCCchhhcceEecC---ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCC-CCCC
Confidence 467899999999984 33322222222344554432 1333322 12226666778877754 54443221 1111
Q ss_pred eee---eccCeEEEeCCeEEEEe
Q 036099 189 ILF---FVMRSVYSRGGILYSIT 208 (279)
Q Consensus 189 ~~~---~~~~~v~~~~g~ly~l~ 208 (279)
..+ -.++=..++ ++.|..+
T Consensus 132 ~pPCPRlGHSFsl~g-nKcYlFG 153 (830)
T KOG4152|consen 132 PPPCPRLGHSFSLVG-NKCYLFG 153 (830)
T ss_pred CCCCCccCceeEEec-cEeEEec
Confidence 111 122224455 7888877
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=90.44 E-value=0.25 Score=43.08 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCC
Q 036099 4 ISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVC 41 (279)
Q Consensus 4 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~ 41 (279)
-.||.+++..||+.|..+++.|++.+|+.|+.+..|..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 47999999999999999999999999999999887755
No 47
>smart00284 OLF Olfactomedin-like domains.
Probab=89.80 E-value=5.6 Score=32.73 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=51.9
Q ss_pred eccCeEEEeCCeEEEEe-cCCeEEEEecCCCeEEEEecCCCCCC---------CCCCeeEEeeCCeEEEEEeCC---CeE
Q 036099 192 FVMRSVYSRGGILYSIT-DQGTIVCYNIEAPTEVEIVEVPDENY---------PYGRGVIELCKGVLNYANRNE---SKL 258 (279)
Q Consensus 192 ~~~~~v~~~~g~ly~l~-~~~~i~~fD~~~~~~~~i~~~P~~~~---------~~~~~~l~~~~G~L~~~~~~~---~~~ 258 (279)
....-|..| |.||+-. .+..|+.||+.+++......+|.... ......++..+..|.++...+ .+|
T Consensus 75 ~GtG~VVYn-gslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~i 153 (255)
T smart00284 75 QGTGVVVYN-GSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKI 153 (255)
T ss_pred ccccEEEEC-ceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCE
Confidence 355678889 9999966 57899999999999875425775311 122366777777787776542 567
Q ss_pred EEEEeccCC
Q 036099 259 LIWLFDDRH 267 (279)
Q Consensus 259 ~vW~l~~~~ 267 (279)
.|=.|+...
T Consensus 154 vvSkLnp~t 162 (255)
T smart00284 154 VISKLNPAT 162 (255)
T ss_pred EEEeeCccc
Confidence 777776544
No 48
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=89.42 E-value=0.51 Score=27.32 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=25.5
Q ss_pred eeccCcEEEEeee-----cCCeeEEEEcCCCccccccCCCC
Q 036099 97 FDSCNGLILLGSS-----LREHRYYVCNPLTKQCVAIPKAR 132 (279)
Q Consensus 97 ~~s~~Glll~~~~-----~~~~~~~v~NP~T~~~~~lP~~~ 132 (279)
+.+.+|.|.+..+ .....+.++||.|++|..+|+++
T Consensus 7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 4455666655542 22456899999999999999874
No 49
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=88.45 E-value=5.6 Score=34.96 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=33.8
Q ss_pred CeEEEEe----cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCC------CeEEEEEe
Q 036099 202 GILYSIT----DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNE------SKLLIWLF 263 (279)
Q Consensus 202 g~ly~l~----~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~------~~~~vW~l 263 (279)
..||... +...++.||+-..+... |- .+.+..+. .+|+|+++...+ .-|+||.-
T Consensus 320 DvLYvF~~~~~g~~~Ll~YN~I~k~v~t----Pi---~chG~alf-~DG~l~~fra~~~EptrvHp~QiWqT 383 (448)
T PF12458_consen 320 DVLYVFYAREEGRYLLLPYNLIRKEVAT----PI---ICHGYALF-EDGRLVYFRAEGDEPTRVHPMQIWQT 383 (448)
T ss_pred eEEEEEEECCCCcEEEEechhhhhhhcC----Ce---eccceeEe-cCCEEEEEecCCCCcceeccceeecC
Confidence 4556554 35667788876655433 22 12333343 489999999762 77889984
No 50
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=87.48 E-value=9.8 Score=32.95 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=46.8
Q ss_pred eEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEe--c-C--CeEEEEecCCC-----------eEEEEec
Q 036099 165 EAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSIT--D-Q--GTIVCYNIEAP-----------TEVEIVE 228 (279)
Q Consensus 165 ~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~--~-~--~~i~~fD~~~~-----------~~~~i~~ 228 (279)
....|+.++..|+....=..| ..-.+.++. .-=-|++ . . +.|-+.|+.+. .|..+ .
T Consensus 200 GTysfDt~~~~W~~~GdW~LP------F~G~a~y~~-el~~W~Gls~~~~~~~lca~dv~~~~~~~~pp~~~~~~~~l-~ 271 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDWMLP------FHGQAEYVP-ELDLWFGLSSDGGGGHLCACDVSSADSASPPPEWKLTWEEL-F 271 (342)
T ss_pred EEEEEEcCCcceeeccceecC------cCCccEECC-CcCeEEEeccCCCCcEEEEEeccccccCCCCCcceeccccc-c
Confidence 578888888999887442123 333455555 4445555 2 2 48999998773 23344 4
Q ss_pred CCCCCCCCCCeeEEee-CCeEEEEEe
Q 036099 229 VPDENYPYGRGVIELC-KGVLNYANR 253 (279)
Q Consensus 229 ~P~~~~~~~~~~l~~~-~G~L~~~~~ 253 (279)
.|.. .......|+.+ +|+.|++..
T Consensus 272 ~~~~-~~~~~~~Lv~lG~grFCi~~~ 296 (342)
T PF07893_consen 272 PPEE-WRHVGATLVYLGSGRFCIVEF 296 (342)
T ss_pred cccc-ccccCceEEECCCCCEEEEEE
Confidence 4432 22223445444 689999984
No 51
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=87.37 E-value=0.89 Score=26.64 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=14.1
Q ss_pred CeeEEEEcCCCccccccCCCC
Q 036099 112 EHRYYVCNPLTKQCVAIPKAR 132 (279)
Q Consensus 112 ~~~~~v~NP~T~~~~~lP~~~ 132 (279)
...++++|+.|++|..+|++|
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp ---EEEEETTTTEEEE--SS-
T ss_pred cCCEEEEECCCCEEEECCCCC
Confidence 356899999999999998775
No 52
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.05 E-value=2.9 Score=35.83 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=64.7
Q ss_pred cceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEe----------------------------------
Q 036099 163 VSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSIT---------------------------------- 208 (279)
Q Consensus 163 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~---------------------------------- 208 (279)
...+..|++.+++|..++... |.. .....++..++..+|+.+
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~s-P~g---l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~ 187 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRS-PTG---LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK 187 (381)
T ss_pred eeeeEEecCCCChhheecccc-ccc---cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence 336889999999999887643 432 234455666623888887
Q ss_pred ------cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCC----CeEEEEEec
Q 036099 209 ------DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNE----SKLLIWLFD 264 (279)
Q Consensus 209 ------~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~----~~~~vW~l~ 264 (279)
....+++||+.+++|+.....|.-.. .+..+...+++|.++..+- .+-.+|+.+
T Consensus 188 ~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~--aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~ 251 (381)
T COG3055 188 KAEDYFFNKEVLSYDPSTNQWRNLGENPFYGN--AGSAVVIKGNKLTLINGEIKPGLRTAEVKQAD 251 (381)
T ss_pred CHHHhcccccccccccccchhhhcCcCcccCc--cCcceeecCCeEEEEcceecCCccccceeEEE
Confidence 14689999999999999955787432 2234444567788887652 455555554
No 53
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=83.41 E-value=1.9 Score=23.99 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=19.3
Q ss_pred cCeEEEeCCeEEEEecCCeEEEEecCC
Q 036099 194 MRSVYSRGGILYSITDQGTIVCYNIEA 220 (279)
Q Consensus 194 ~~~v~~~~g~ly~l~~~~~i~~fD~~~ 220 (279)
..++..+ |.+|.-+..+.+.+||.+|
T Consensus 15 ~~~~v~~-g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAG-GRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S--EECT-SEEEEE-TTSEEEEEETT-
T ss_pred cCCEEEC-CEEEEEcCCCEEEEEeCCC
Confidence 3456677 9999999999999999875
No 54
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=82.57 E-value=31 Score=29.77 Aligned_cols=119 Identities=17% Similarity=0.231 Sum_probs=58.4
Q ss_pred EEEecCCCCCceEEEEEEeccccceEEEEeCC--CCCccccccCCC-CCceeeeeccCeEEEe-CCe-EEEEe-cCCeEE
Q 036099 141 ALAFDPRDSSHYKIIRFVRARMVSEAEIFSSE--TKTWINCKLNLK-PPGHILFFVMRSVYSR-GGI-LYSIT-DQGTIV 214 (279)
Q Consensus 141 ~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~--~~~W~~~~~~~~-p~~~~~~~~~~~v~~~-~g~-ly~l~-~~~~i~ 214 (279)
.+.|++. +.|-.|. .+. ...+.+|+.. ++.++.++.... |...........+.+. +|+ ||.-. ..+.|.
T Consensus 196 h~~f~pd--g~~~Yv~-~e~--s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 196 HLAFSPD--GKYAYVV-NEL--SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp EEEE-TT--SSEEEEE-ETT--TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred EEEEcCC--cCEEEEe-cCC--CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 5567774 4443332 222 4455566544 666665543211 1111000011222222 154 45544 578899
Q ss_pred EEec--CCCeEEEEecCCCCCCCCC-CeeEEe-eCCe-EEEEEeCCCeEEEEEeccCC
Q 036099 215 CYNI--EAPTEVEIVEVPDENYPYG-RGVIEL-CKGV-LNYANRNESKLLIWLFDDRH 267 (279)
Q Consensus 215 ~fD~--~~~~~~~i~~~P~~~~~~~-~~~l~~-~~G~-L~~~~~~~~~~~vW~l~~~~ 267 (279)
+|++ .+.+.+.+...|-. +. -..+.. -+|+ |+++......+.++.++...
T Consensus 271 vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTG---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEECTTTTTEEEEEEEEES---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EEEEecCCCceEEEEEEeCC---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 9998 44577776444432 22 122332 2555 55555567899999987433
No 55
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=81.94 E-value=3.9 Score=21.34 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=19.6
Q ss_pred EEeCCeEEEEecCCeEEEEecCCCe
Q 036099 198 YSRGGILYSITDQGTIVCYNIEAPT 222 (279)
Q Consensus 198 ~~~~g~ly~l~~~~~i~~fD~~~~~ 222 (279)
..+ |.+|.-...+.+.++|..+.+
T Consensus 4 ~~~-~~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 4 LSD-GTVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred EEC-CEEEEEcCCCEEEEEEcccCc
Confidence 345 789988888999999998765
No 56
>PF13013 F-box-like_2: F-box-like domain
Probab=81.87 E-value=1.9 Score=30.40 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHHhhhhH
Q 036099 3 QISLSEDLITEILCRLPVKSVTRFKIVSK 31 (279)
Q Consensus 3 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK 31 (279)
+.+||+||++.|+..-....+...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56799999999999999888766666665
No 57
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=80.67 E-value=2.1 Score=25.12 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=18.3
Q ss_pred CeeEEEEcCCCccccccCCCCc
Q 036099 112 EHRYYVCNPLTKQCVAIPKARE 133 (279)
Q Consensus 112 ~~~~~v~NP~T~~~~~lP~~~~ 133 (279)
.+.++++|+.|++|..+++.|.
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCC
Confidence 3578999999999999976654
No 58
>smart00612 Kelch Kelch domain.
Probab=80.60 E-value=2.7 Score=23.80 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=19.1
Q ss_pred CeeEEEEcCCCccccccCCCCcc
Q 036099 112 EHRYYVCNPLTKQCVAIPKARER 134 (279)
Q Consensus 112 ~~~~~v~NP~T~~~~~lP~~~~~ 134 (279)
...+.++||.|++|..+|+++..
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCc
Confidence 35678999999999999988653
No 59
>PLN02772 guanylate kinase
Probab=78.68 E-value=17 Score=32.05 Aligned_cols=70 Identities=14% Similarity=0.042 Sum_probs=48.9
Q ss_pred ccCeEEEeCCeEEEEec-------CCeEEEEecCCCeEEEEecC---CCCCCCCCCeeEEeeCCeEEEEEeCC-CeEEEE
Q 036099 193 VMRSVYSRGGILYSITD-------QGTIVCYNIEAPTEVEIVEV---PDENYPYGRGVIELCKGVLNYANRNE-SKLLIW 261 (279)
Q Consensus 193 ~~~~v~~~~g~ly~l~~-------~~~i~~fD~~~~~~~~i~~~---P~~~~~~~~~~l~~~~G~L~~~~~~~-~~~~vW 261 (279)
...++.++ +++|..+. ...+..||+.+.+|..- .+ |+.+..+ ...+...+++|.++.... ..=.||
T Consensus 27 ~~tav~ig-dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P-~V~G~~P~~r~G-hSa~v~~~~rilv~~~~~~~~~~~w 103 (398)
T PLN02772 27 RETSVTIG-DKTYVIGGNHEGNTLSIGVQILDKITNNWVSP-IVLGTGPKPCKG-YSAVVLNKDRILVIKKGSAPDDSIW 103 (398)
T ss_pred cceeEEEC-CEEEEEcccCCCccccceEEEEECCCCcEecc-cccCCCCCCCCc-ceEEEECCceEEEEeCCCCCccceE
Confidence 45678888 99999982 34899999999999975 32 2222222 334444578888888654 667899
Q ss_pred Eecc
Q 036099 262 LFDD 265 (279)
Q Consensus 262 ~l~~ 265 (279)
.|+-
T Consensus 104 ~l~~ 107 (398)
T PLN02772 104 FLEV 107 (398)
T ss_pred EEEc
Confidence 9874
No 60
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=77.65 E-value=49 Score=29.08 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=55.4
Q ss_pred CcEEEEeeecCCeeEEEEcCCCcc--ccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCC--c
Q 036099 101 NGLILLGSSLREHRYYVCNPLTKQ--CVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKT--W 176 (279)
Q Consensus 101 ~Glll~~~~~~~~~~~v~NP~T~~--~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~--W 176 (279)
+|.+.+.. ....++.+|+.||+ |.. +... ... +..+ +. +|+.... .-.+..++.++|+ |
T Consensus 256 ~~~vy~~~--~~g~l~ald~~tG~~~W~~--~~~~---~~~--~~~~----~~-~vy~~~~---~g~l~ald~~tG~~~W 318 (394)
T PRK11138 256 GGVVYALA--YNGNLVALDLRSGQIVWKR--EYGS---VND--FAVD----GG-RIYLVDQ---NDRVYALDTRGGVELW 318 (394)
T ss_pred CCEEEEEE--cCCeEEEEECCCCCEEEee--cCCC---ccC--cEEE----CC-EEEEEcC---CCeEEEEECCCCcEEE
Confidence 56665554 34578889999987 332 1110 000 0111 11 2222222 2356666777764 7
Q ss_pred cccccCCCCCceeeeeccCeEEEeCCeEEEEecCCeEEEEecCCCeE
Q 036099 177 INCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTE 223 (279)
Q Consensus 177 ~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~~ 223 (279)
+..... . .....++..+ |.+|.....+.|.++|..+.+.
T Consensus 319 ~~~~~~---~----~~~~sp~v~~-g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 319 SQSDLL---H----RLLTAPVLYN-GYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred cccccC---C----CcccCCEEEC-CEEEEEeCCCEEEEEECCCCCE
Confidence 643211 1 1134567788 9999998899999999988763
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=75.16 E-value=40 Score=26.81 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=75.1
Q ss_pred ccCcEEEEeeecCCeeEEEEcCCCcc--cc-ccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCC
Q 036099 99 SCNGLILLGSSLREHRYYVCNPLTKQ--CV-AIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKT 175 (279)
Q Consensus 99 s~~Glll~~~~~~~~~~~v~NP~T~~--~~-~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~ 175 (279)
..+|.+++.. ....++.+|..||+ |. .....+...........++ +..-++... ...+..++.++|+
T Consensus 74 ~~~~~v~v~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 74 VDGGRVYVGT--SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD----GDRLYVGTS----SGKLVALDPKTGK 143 (238)
T ss_dssp EETTEEEEEE--TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE----TTEEEEEET----CSEEEEEETTTTE
T ss_pred eccccccccc--ceeeeEecccCCcceeeeeccccccccccccccCceEe----cCEEEEEec----cCcEEEEecCCCc
Confidence 3455555554 23488999999997 44 2211111111111111111 222233321 3467888888884
Q ss_pred --ccccccCCCCCcee-----eeeccCeEEEeCCeEEEEecCCeEEEEecCCCe--EEEEecCCCCCCCCCCeeEEeeCC
Q 036099 176 --WINCKLNLKPPGHI-----LFFVMRSVYSRGGILYSITDQGTIVCYNIEAPT--EVEIVEVPDENYPYGRGVIELCKG 246 (279)
Q Consensus 176 --W~~~~~~~~p~~~~-----~~~~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~--~~~i~~~P~~~~~~~~~~l~~~~G 246 (279)
|+..... |.... ......++..+ |.+|.....+.++++|..+.+ | .. + +.. ........++
T Consensus 144 ~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~g~~~~~d~~tg~~~w-~~-~-~~~----~~~~~~~~~~ 213 (238)
T PF13360_consen 144 LLWKYPVGE--PRGSSPISSFSDINGSPVISD-GRVYVSSGDGRVVAVDLATGEKLW-SK-P-ISG----IYSLPSVDGG 213 (238)
T ss_dssp EEEEEESST--T-SS--EEEETTEEEEEECCT-TEEEEECCTSSEEEEETTTTEEEE-EE-C-SS-----ECECEECCCT
T ss_pred EEEEeecCC--CCCCcceeeecccccceEEEC-CEEEEEcCCCeEEEEECCCCCEEE-Ee-c-CCC----ccCCceeeCC
Confidence 7654322 21110 11123445556 888888877778888999998 5 33 3 221 1122344456
Q ss_pred eEEEEEeCCCeEEEEEec
Q 036099 247 VLNYANRNESKLLIWLFD 264 (279)
Q Consensus 247 ~L~~~~~~~~~~~vW~l~ 264 (279)
.|++.. ...++..|-++
T Consensus 214 ~l~~~~-~~~~l~~~d~~ 230 (238)
T PF13360_consen 214 TLYVTS-SDGRLYALDLK 230 (238)
T ss_dssp EEEEEE-TTTEEEEEETT
T ss_pred EEEEEe-CCCEEEEEECC
Confidence 666666 66777766655
No 62
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=74.68 E-value=16 Score=25.94 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=34.0
Q ss_pred CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc--cceEEEE
Q 036099 112 EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM--VSEAEIF 169 (279)
Q Consensus 112 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~--~~~~~vy 169 (279)
...++++||.|+.|...-+. ........+-+++.. +.|+|++....+. ...+++|
T Consensus 8 rA~Vm~~d~~tk~W~P~~~~--~~~ls~V~~~~~~~~-~~yrIvg~~~~~~~~v~e~~l~ 64 (111)
T cd01207 8 RASVMVYDDSNKKWVPAGGG--SQGFSRVQIYHHPRN-NTFRVVGRKLQDHQVVINCAIV 64 (111)
T ss_pred EEEeeEEcCCCCcEEcCCCC--CCCcceEEEEEcCCC-CEEEEEEeecCCCcEEEEEEec
Confidence 35788999999997654221 123344455567765 8899998764432 3344444
No 63
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=73.55 E-value=60 Score=28.08 Aligned_cols=158 Identities=12% Similarity=0.163 Sum_probs=77.7
Q ss_pred CceEeeccCcEEEEeeecCCeeEEEEcCCCcccc-ccCCCCccCCCcc--cEEEecCCCCCceEEEEEEeccc--cceEE
Q 036099 93 PYKLFDSCNGLILLGSSLREHRYYVCNPLTKQCV-AIPKARERVLESA--PALAFDPRDSSHYKIIRFVRARM--VSEAE 167 (279)
Q Consensus 93 ~~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~-~lP~~~~~~~~~~--~~lg~d~~~~~~ykvv~~~~~~~--~~~~~ 167 (279)
....+...+-++++...+....+-|.+-..++.. .+|.|.....++. -.|.--.. +|...-|.+...++ ....+
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~-DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCG-DGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEET-TSCEEEEEETSTSSEEEEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEec-CCceEEEEECCCCCEeEeecc
Confidence 3445555666777777666677888888888854 3555432111000 01111111 12233333322221 11223
Q ss_pred EEeCCCCCccccccCCCCCceeeeeccCeEEEe-CCeEEEEecCCeEEEEecCCCeEEEEecCCCC--C-----CCCCCe
Q 036099 168 IFSSETKTWINCKLNLKPPGHILFFVMRSVYSR-GGILYSITDQGTIVCYNIEAPTEVEIVEVPDE--N-----YPYGRG 239 (279)
Q Consensus 168 vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~-~g~ly~l~~~~~i~~fD~~~~~~~~i~~~P~~--~-----~~~~~~ 239 (279)
+|+.+.+ | -...+++.+ +|.+||.+..+.|...|+..+.-....+.+.- . ..-.+.
T Consensus 177 ~F~~~~d----------p------~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 177 VFDPDDD----------P------LFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp ESSTTTS-----------------B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred ccCCCCc----------c------cccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 3332221 1 122344443 26899999999999999999875554222210 0 001123
Q ss_pred eEEe---eCCeEEEEEeCC-------CeEEEEEeccCC
Q 036099 240 VIEL---CKGVLNYANRNE-------SKLLIWLFDDRH 267 (279)
Q Consensus 240 ~l~~---~~G~L~~~~~~~-------~~~~vW~l~~~~ 267 (279)
.+.. -.|+||+...++ ..-+||+++-..
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t 278 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT 278 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC
Confidence 3332 367888776432 678899988544
No 64
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=72.46 E-value=67 Score=28.21 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=42.6
Q ss_pred cCeEEEeCCeEEEEecCCeEEEEecCCCe--EEEEecCCCC---CCCCCCeeEEeeCCeEEEEEeCCCeEEEEEec
Q 036099 194 MRSVYSRGGILYSITDQGTIVCYNIEAPT--EVEIVEVPDE---NYPYGRGVIELCKGVLNYANRNESKLLIWLFD 264 (279)
Q Consensus 194 ~~~v~~~~g~ly~l~~~~~i~~fD~~~~~--~~~i~~~P~~---~~~~~~~~l~~~~G~L~~~~~~~~~~~vW~l~ 264 (279)
..|+..+ |.+|..+..+.+.++|..+.+ |+. ++... ...+...+++..+|+|+.+..... -.+|..+
T Consensus 250 ~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~W~~--~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG-~~~W~~~ 321 (394)
T PRK11138 250 TTPVVVG-GVVYALAYNGNLVALDLRSGQIVWKR--EYGSVNDFAVDGGRIYLVDQNDRVYALDTRGG-VELWSQS 321 (394)
T ss_pred CCcEEEC-CEEEEEEcCCeEEEEECCCCCEEEee--cCCCccCcEEECCEEEEEcCCCeEEEEECCCC-cEEEccc
Confidence 4677788 999999888999999998865 654 22211 111233455555677666666543 2477654
No 65
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=71.98 E-value=48 Score=26.32 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=58.2
Q ss_pred cCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCC--Ccc
Q 036099 100 CNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETK--TWI 177 (279)
Q Consensus 100 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~--~W~ 177 (279)
.+|.+++.. ....++.+|+.||+...--..+...... ... + + -+|+.... ...+..++..+| .|+
T Consensus 35 ~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~-~----~-~~v~v~~~---~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 35 DGGRVYVAS--GDGNLYALDAKTGKVLWRFDLPGPISGA--PVV-D----G-GRVYVGTS---DGSLYALDAKTGKVLWS 101 (238)
T ss_dssp ETTEEEEEE--TTSEEEEEETTTSEEEEEEECSSCGGSG--EEE-E----T-TEEEEEET---TSEEEEEETTTSCEEEE
T ss_pred eCCEEEEEc--CCCEEEEEECCCCCEEEEeeccccccce--eee-c----c-cccccccc---eeeeEecccCCcceeee
Confidence 577777764 5678999999999844221211111111 111 1 1 13333322 227888888887 488
Q ss_pred c-cccCCCCCceeeeeccCeEEEeCCeEEEEecCCeEEEEecCCCeE
Q 036099 178 N-CKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTE 223 (279)
Q Consensus 178 ~-~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~~ 223 (279)
. .... |... . .......+.++.+|.....+.|+++|+.+.+-
T Consensus 102 ~~~~~~--~~~~-~-~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 102 IYLTSS--PPAG-V-RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp EEE-SS--CTCS-T-B--SEEEEETTEEEEEETCSEEEEEETTTTEE
T ss_pred eccccc--cccc-c-ccccCceEecCEEEEEeccCcEEEEecCCCcE
Confidence 4 3222 1111 1 11222333327788777799999999988763
No 66
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=68.84 E-value=25 Score=30.62 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=39.6
Q ss_pred eEEEeCCeEEEEecCCeEEEEecCCCe--EEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCCCeEEEEEeccC
Q 036099 196 SVYSRGGILYSITDQGTIVCYNIEAPT--EVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDDR 266 (279)
Q Consensus 196 ~v~~~~g~ly~l~~~~~i~~fD~~~~~--~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~vW~l~~~ 266 (279)
++..+ |++|.-...+.|.+||.++.+ |+.- ... .......+.+.. +|++++-...+ .++.+++.
T Consensus 64 ~~~~d-g~v~~~~~~G~i~A~d~~~g~~~W~~~-~~~-~~~~~~~~~~~~-~G~i~~g~~~g---~~y~ld~~ 129 (370)
T COG1520 64 PADGD-GTVYVGTRDGNIFALNPDTGLVKWSYP-LLG-AVAQLSGPILGS-DGKIYVGSWDG---KLYALDAS 129 (370)
T ss_pred cEeeC-CeEEEecCCCcEEEEeCCCCcEEeccc-CcC-cceeccCceEEe-CCeEEEecccc---eEEEEECC
Confidence 58888 999999888899999999976 7664 332 000111122222 66655555444 55555553
No 67
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=67.10 E-value=85 Score=27.26 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=37.5
Q ss_pred ceEEEEeCCCCC--ccccccCCCCCceeeeeccCeEEEeCCeEEEEecCCeEEEEecCCCeEE-EEecCCC
Q 036099 164 SEAEIFSSETKT--WINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEV-EIVEVPD 231 (279)
Q Consensus 164 ~~~~vy~s~~~~--W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~~~-~i~~~P~ 231 (279)
-.+..++..+++ |+..... . .....++..+ +.+|..+..+.|.++|..+.+.. .+ +++.
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~---~----~~~ssp~i~g-~~l~~~~~~G~l~~~d~~tG~~~~~~-~~~~ 350 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELK---Y----RQLTAPAVVG-GYLVVGDFEGYLHWLSREDGSFVARL-KTDG 350 (377)
T ss_pred CeEEEEECCCCcEEEcccccc---C----CccccCEEEC-CEEEEEeCCCEEEEEECCCCCEEEEE-EcCC
Confidence 356777777763 7653211 1 1123556677 99999988999999999876533 33 4443
No 68
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=64.43 E-value=20 Score=25.24 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=29.7
Q ss_pred CeeEEEEcCCCc-cccccCCCCccCCCcccEEEecCCCCCceEEEEEEe
Q 036099 112 EHRYYVCNPLTK-QCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVR 159 (279)
Q Consensus 112 ~~~~~v~NP~T~-~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~ 159 (279)
..+++++||.|+ .|...-+ ......+-+|+.. ..|+||.+..
T Consensus 10 rA~V~~yd~~tKk~WvPs~~-----~~~~V~~y~~~~~-ntfRIi~~~~ 52 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPASK-----HAVTVSYFYDSTR-NVYRIISVGG 52 (111)
T ss_pred eeEEEEECCCCcceeEeCCC-----CceeEEEEecCCC-cEEEEEEecC
Confidence 457899999997 7875433 2235555578886 8999999643
No 69
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=63.04 E-value=69 Score=27.84 Aligned_cols=21 Identities=19% Similarity=0.539 Sum_probs=14.3
Q ss_pred CeEEEEecCCeEEEEecCCCe
Q 036099 202 GILYSITDQGTIVCYNIEAPT 222 (279)
Q Consensus 202 g~ly~l~~~~~i~~fD~~~~~ 222 (279)
+.+|.-+..+.+.+||..+.+
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~ 126 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGK 126 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCc
Confidence 677766666777777775544
No 70
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=62.91 E-value=80 Score=25.48 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=62.6
Q ss_pred eccCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCCcc
Q 036099 98 DSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWI 177 (279)
Q Consensus 98 ~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~ 177 (279)
+..+|-|++.. ....+++.++|.+++...+..+. ..++.++... +.+ +... .....+++..+++++
T Consensus 8 d~~~g~l~~~D-~~~~~i~~~~~~~~~~~~~~~~~------~~G~~~~~~~-g~l--~v~~----~~~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 8 DPRDGRLYWVD-IPGGRIYRVDPDTGEVEVIDLPG------PNGMAFDRPD-GRL--YVAD----SGGIAVVDPDTGKVT 73 (246)
T ss_dssp ETTTTEEEEEE-TTTTEEEEEETTTTEEEEEESSS------EEEEEEECTT-SEE--EEEE----TTCEEEEETTTTEEE
T ss_pred ECCCCEEEEEE-cCCCEEEEEECCCCeEEEEecCC------CceEEEEccC-CEE--EEEE----cCceEEEecCCCcEE
Confidence 34467776666 34578899999999876644432 3455566322 333 2222 335677799999887
Q ss_pred ccccCCCCCc-eeeeeccCeEEEeCCeEEEEec---------CCeEEEEecCCCeEEEE
Q 036099 178 NCKLNLKPPG-HILFFVMRSVYSRGGILYSITD---------QGTIVCYNIEAPTEVEI 226 (279)
Q Consensus 178 ~~~~~~~p~~-~~~~~~~~~v~~~~g~ly~l~~---------~~~i~~fD~~~~~~~~i 226 (279)
.+..... .. .......-.+--+ |.+|+-.. .+.|..+|.. .+.+.+
T Consensus 74 ~~~~~~~-~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 74 VLADLPD-GGVPFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEEEET-TCSCTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEeeccC-CCcccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 6654321 11 1111111222334 88777652 1679999999 655544
No 71
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=62.22 E-value=13 Score=20.31 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=17.8
Q ss_pred CeEEEEecCCeEEEEecCCCe--EEE
Q 036099 202 GILYSITDQGTIVCYNIEAPT--EVE 225 (279)
Q Consensus 202 g~ly~l~~~~~i~~fD~~~~~--~~~ 225 (279)
|.+|.-...+.|.++|..+.+ |+.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEee
Confidence 456666678899999988866 554
No 72
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=61.30 E-value=1.4e+02 Score=27.70 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=22.9
Q ss_pred eEEEeCCeEEEEecCCeEEEEecCCCe--EEE
Q 036099 196 SVYSRGGILYSITDQGTIVCYNIEAPT--EVE 225 (279)
Q Consensus 196 ~v~~~~g~ly~l~~~~~i~~fD~~~~~--~~~ 225 (279)
+++.+ |++|.-...+.++++|..|.+ |+.
T Consensus 116 ~av~~-~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 116 VALYD-GKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred ceEEC-CEEEEEcCCCEEEEEECCCCCEEeec
Confidence 35556 999988888999999998865 554
No 73
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=58.81 E-value=11 Score=31.09 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHhcCC-hhhhHHHhhhhHHHHhhhcCCCCC
Q 036099 3 QISLSEDLITEILCRLP-VKSVTRFKIVSKAWNNLISNVCIP 43 (279)
Q Consensus 3 ~~~LP~Dll~eIL~rLP-~~~l~r~r~VcK~W~~li~~~~F~ 43 (279)
..+||.+++.+||.||| -.+|..++.|-..-..++++....
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iW 243 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIW 243 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHH
Confidence 46899999999999999 899999999988888888765533
No 74
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=58.19 E-value=52 Score=28.11 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=39.7
Q ss_pred ccCeEEEeCCeEEEEe-cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEe
Q 036099 193 VMRSVYSRGGILYSIT-DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANR 253 (279)
Q Consensus 193 ~~~~v~~~~g~ly~l~-~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~ 253 (279)
..+|-..+ |+||.+. ..+.+..+|+.+.+++.+..+|... .-|+-. |.+.++.+
T Consensus 205 PhSPRWhd-grLwvldsgtGev~~vD~~~G~~e~Va~vpG~~-----rGL~f~-G~llvVgm 259 (335)
T TIGR03032 205 PHSPRWYQ-GKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFT-----RGLAFA-GDFAFVGL 259 (335)
T ss_pred CcCCcEeC-CeEEEEECCCCEEEEEcCCCCcEEEEEECCCCC-----ccccee-CCEEEEEe
Confidence 44667788 9999998 6899999999999999987888642 112222 66666665
No 75
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=57.41 E-value=1.2e+02 Score=25.62 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=76.0
Q ss_pred eccCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCCcc
Q 036099 98 DSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWI 177 (279)
Q Consensus 98 ~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~ 177 (279)
-+-+|-+-+... ....+=-.||.||+....|-.... ... ++..++.. . - ++... ...+.-++.++..=+
T Consensus 69 papdG~VWft~q-g~gaiGhLdP~tGev~~ypLg~Ga-~Ph--giv~gpdg-~-~---Witd~--~~aI~R~dpkt~evt 137 (353)
T COG4257 69 PAPDGAVWFTAQ-GTGAIGHLDPATGEVETYPLGSGA-SPH--GIVVGPDG-S-A---WITDT--GLAIGRLDPKTLEVT 137 (353)
T ss_pred cCCCCceEEecC-ccccceecCCCCCceEEEecCCCC-CCc--eEEECCCC-C-e---eEecC--cceeEEecCcccceE
Confidence 355887777762 223344689999999888765321 122 33333322 1 0 11111 112333344443221
Q ss_pred ccccCCCCCceeeeeccCeEEEeCCeEEEEecCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeC
Q 036099 178 NCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRN 254 (279)
Q Consensus 178 ~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~ 254 (279)
..+. |..+.......+|+-..|.|++.+..+.--.+|+.++..++. +.|... .-....++-+|.+++....
T Consensus 138 ~f~l---p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vf-paPqG~--gpyGi~atpdGsvwyasla 208 (353)
T COG4257 138 RFPL---PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVF-PAPQGG--GPYGICATPDGSVWYASLA 208 (353)
T ss_pred Eeec---ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeee-ccCCCC--CCcceEECCCCcEEEEecc
Confidence 1111 222222222334444438898888877778999999999999 999652 2223445568888877543
No 76
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.29 E-value=1.4e+02 Score=26.07 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=45.6
Q ss_pred cceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEe-------cC--CeEEEEecCCCeEEEEecCCCCC
Q 036099 163 VSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSIT-------DQ--GTIVCYNIEAPTEVEIVEVPDEN 233 (279)
Q Consensus 163 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~-------~~--~~i~~fD~~~~~~~~i~~~P~~~ 233 (279)
...+-.|+..++.|+..... |... ..-.++...++++-.+. .. -...-|.-...+|..++++|...
T Consensus 195 n~ev~sy~p~~n~W~~~G~~--pf~~---~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~ 269 (381)
T COG3055 195 NKEVLSYDPSTNQWRNLGEN--PFYG---NAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPI 269 (381)
T ss_pred cccccccccccchhhhcCcC--cccC---ccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCC
Confidence 45577899999999988644 3321 11233444413343333 12 33444555677898887777653
Q ss_pred CCCCC----eeEEeeCCeEEEEE
Q 036099 234 YPYGR----GVIELCKGVLNYAN 252 (279)
Q Consensus 234 ~~~~~----~~l~~~~G~L~~~~ 252 (279)
..... ..-+.++|.+.+..
T Consensus 270 ~~~~eGvAGaf~G~s~~~~lv~G 292 (381)
T COG3055 270 GSNKEGVAGAFSGKSNGEVLVAG 292 (381)
T ss_pred CCCccccceeccceeCCeEEEec
Confidence 32222 22234455555554
No 77
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=53.98 E-value=20 Score=32.57 Aligned_cols=53 Identities=11% Similarity=0.305 Sum_probs=38.8
Q ss_pred cCCeEEEEecCCCeEEEEecCCCCCCCCCC--eeEEee-CCeEEEEEeCCCeEEEEEeccCC
Q 036099 209 DQGTIVCYNIEAPTEVEIVEVPDENYPYGR--GVIELC-KGVLNYANRNESKLLIWLFDDRH 267 (279)
Q Consensus 209 ~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~--~~l~~~-~G~L~~~~~~~~~~~vW~l~~~~ 267 (279)
.++.+-+||..+++..-+ .....+ .++..+ ||+..+.+.++.-+.||.+.|..
T Consensus 310 qDGfLRvF~fdt~eLlg~------mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 310 QDGFLRIFDFDTQELLGV------MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cCceEEEeeccHHHHHHH------HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence 678888888888776554 222233 344444 89999999999999999998754
No 78
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=53.89 E-value=1.2e+02 Score=24.52 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=21.9
Q ss_pred CeEEEEe-cCCeEEEEecCCCeEEEEecCCC
Q 036099 202 GILYSIT-DQGTIVCYNIEAPTEVEIVEVPD 231 (279)
Q Consensus 202 g~ly~l~-~~~~i~~fD~~~~~~~~i~~~P~ 231 (279)
|.|||.. ....|..+|+.+.+.+.+ .+|.
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~~~~-~~~~ 41 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEVEVI-DLPG 41 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEE-ESSS
T ss_pred CEEEEEEcCCCEEEEEECCCCeEEEE-ecCC
Confidence 7888877 567788888888877777 6665
No 79
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=53.70 E-value=93 Score=28.82 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=26.1
Q ss_pred cCeEEEeCCeEEEEecCCeEEEEecCCCe--EEEE
Q 036099 194 MRSVYSRGGILYSITDQGTIVCYNIEAPT--EVEI 226 (279)
Q Consensus 194 ~~~v~~~~g~ly~l~~~~~i~~fD~~~~~--~~~i 226 (279)
..++..+ |.+|..+..+.|.++|..+.+ |+.-
T Consensus 63 stPvv~~-g~vyv~s~~g~v~AlDa~TGk~lW~~~ 96 (527)
T TIGR03075 63 SQPLVVD-GVMYVTTSYSRVYALDAKTGKELWKYD 96 (527)
T ss_pred cCCEEEC-CEEEEECCCCcEEEEECCCCceeeEec
Confidence 4678888 999998888899999988754 7753
No 80
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=52.69 E-value=87 Score=30.52 Aligned_cols=33 Identities=9% Similarity=0.011 Sum_probs=27.6
Q ss_pred ccCeEEEeCCeEEEEecCCeEEEEecCCCe--EEEE
Q 036099 193 VMRSVYSRGGILYSITDQGTIVCYNIEAPT--EVEI 226 (279)
Q Consensus 193 ~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~--~~~i 226 (279)
...|+.++ |++|..+..+.|+++|..|.+ |+.-
T Consensus 187 e~TPlvvg-g~lYv~t~~~~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 187 QATPLKVG-DTLYLCTPHNKVIALDAATGKEKWKFD 221 (764)
T ss_pred ccCCEEEC-CEEEEECCCCeEEEEECCCCcEEEEEc
Confidence 45788999 999999988999999988754 7763
No 81
>PRK04792 tolB translocation protein TolB; Provisional
Probab=52.58 E-value=1.8e+02 Score=26.25 Aligned_cols=138 Identities=15% Similarity=0.047 Sum_probs=72.4
Q ss_pred CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCCccccccCCCCCceeee
Q 036099 112 EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILF 191 (279)
Q Consensus 112 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~ 191 (279)
...++++|..|++...+...+. ......+.+. +++-++. ...+....+.+++.+++..+.+..... ..
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g----~~~~~~wSPD--G~~La~~-~~~~g~~~Iy~~dl~tg~~~~lt~~~~-~~---- 308 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPG----INGAPRFSPD--GKKLALV-LSKDGQPEIYVVDIATKALTRITRHRA-ID---- 308 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCC----CcCCeeECCC--CCEEEEE-EeCCCCeEEEEEECCCCCeEECccCCC-Cc----
Confidence 4679999999988766654321 1123455664 3433333 233335567778888887665533210 00
Q ss_pred eccCeEEEeCCeEEEEe---cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCCCeEEEEEecc
Q 036099 192 FVMRSVYSRGGILYSIT---DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDD 265 (279)
Q Consensus 192 ~~~~~v~~~~g~ly~l~---~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~vW~l~~ 265 (279)
......-+|..+++.. ....|..+|+.+.+.+.+ ..... ......+...+..|++.........||+++-
T Consensus 309 -~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 309 -TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred -cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence 0111122423455555 245799999998888776 43221 1111222222334555554455667777763
No 82
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=50.37 E-value=33 Score=23.21 Aligned_cols=48 Identities=10% Similarity=0.209 Sum_probs=26.2
Q ss_pred CCeEEEEecCCCeEEEEe-cCCCCCCCCCCeeEEeeCCeEEEEEeCCCeEE-EE
Q 036099 210 QGTIVCYNIEAPTEVEIV-EVPDENYPYGRGVIELCKGVLNYANRNESKLL-IW 261 (279)
Q Consensus 210 ~~~i~~fD~~~~~~~~i~-~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~-vW 261 (279)
.++++.||+.+++.+++. .+... .+..+...+..|.+++....++. .|
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fp----NGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFP----NGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSE----EEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCCCcc----CeEEEcCCCCEEEEEeccCceEEEEE
Confidence 589999999999988761 12111 12333333344666655554433 44
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.08 E-value=1.7e+02 Score=25.04 Aligned_cols=130 Identities=11% Similarity=0.124 Sum_probs=59.9
Q ss_pred EEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCC-ccccccCCCCCceeeeec
Q 036099 115 YYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKT-WINCKLNLKPPGHILFFV 193 (279)
Q Consensus 115 ~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~-W~~~~~~~~p~~~~~~~~ 193 (279)
+-.||-++|+-..+-+... ....+.+++. |+|-+|.+ ...+.+|.+++-+ -+.+.. |-..
T Consensus 151 lr~WNLV~Gr~a~v~~L~~----~at~v~w~~~--Gd~F~v~~-----~~~i~i~q~d~A~v~~~i~~---~~r~----- 211 (362)
T KOG0294|consen 151 LRTWNLVRGRVAFVLNLKN----KATLVSWSPQ--GDHFVVSG-----RNKIDIYQLDNASVFREIEN---PKRI----- 211 (362)
T ss_pred eeeehhhcCccceeeccCC----cceeeEEcCC--CCEEEEEe-----ccEEEEEecccHhHhhhhhc---cccc-----
Confidence 3456666665443322211 1223566764 55444443 5579999888754 333333 2100
Q ss_pred cCeEEEeCCeEEEEecCCeEEEEecCCCeEEEEecCCCCCCCCCCee-EEeeCCeEEEEEeCCCeEEEEEecc
Q 036099 194 MRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGV-IELCKGVLNYANRNESKLLIWLFDD 265 (279)
Q Consensus 194 ~~~v~~~~g~ly~l~~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~-l~~~~G~L~~~~~~~~~~~vW~l~~ 265 (279)
...-+.+++.|..=...+.|..+|..+.+.-.. .+-... .-.... +.+.++.+.+.-..+..|.||.++-
T Consensus 212 l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~-~~AH~~-RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 212 LCATFLDGSELLVGGDNEWISLKDTDSDTPLTE-FLAHEN-RVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred eeeeecCCceEEEecCCceEEEeccCCCcccee-eecchh-heeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 011122212222223568888899887432221 111111 111122 2233444444444567888888763
No 84
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=48.13 E-value=1.3e+02 Score=25.58 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=28.7
Q ss_pred eEEEeC-CeEEEEe-cCCeEEEEecCCCeEEEEecCCCC
Q 036099 196 SVYSRG-GILYSIT-DQGTIVCYNIEAPTEVEIVEVPDE 232 (279)
Q Consensus 196 ~v~~~~-g~ly~l~-~~~~i~~fD~~~~~~~~i~~~P~~ 232 (279)
+++..+ +.|||.. ....|+.+|+.+.+-+.+ ..|..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-~~p~~ 67 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVF-PSPGG 67 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE-ECCCC
Confidence 344443 6789988 789999999999988888 88876
No 85
>PF15408 PH_7: Pleckstrin homology domain
Probab=46.31 E-value=16 Score=24.40 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=18.7
Q ss_pred hhhHHHhhhhHHHHhhhcCCCCC
Q 036099 21 KSVTRFKIVSKAWNNLISNVCIP 43 (279)
Q Consensus 21 ~~l~r~r~VcK~W~~li~~~~F~ 43 (279)
+-....+-|||+|-.++.+|+|.
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhh
Confidence 34556678999999999999875
No 86
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=45.47 E-value=26 Score=31.84 Aligned_cols=93 Identities=10% Similarity=0.062 Sum_probs=51.0
Q ss_pred CccccccCCCCCceeeeeccCeEEEeCCeEEEEec-----CCeEEEEecCCCeEEEE---ecCCCCCCCCCCeeEEeeC-
Q 036099 175 TWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD-----QGTIVCYNIEAPTEVEI---VEVPDENYPYGRGVIELCK- 245 (279)
Q Consensus 175 ~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~-----~~~i~~fD~~~~~~~~i---~~~P~~~~~~~~~~l~~~~- 245 (279)
.||.+.....|. .+....+.+|.++ ..+--.+. -.++.+||+.+++|..- .++|.. ....-..++
T Consensus 18 rWrrV~~~tGPv-PrpRHGHRAVaik-ELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpg----cAA~GfvcdG 91 (830)
T KOG4152|consen 18 RWRRVQQSTGPV-PRPRHGHRAVAIK-ELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPG----CAAFGFVCDG 91 (830)
T ss_pred ceEEEecccCCC-CCccccchheeee-eeEEEecCCcccchhhhhhhccccceeecchhcCCCCCc----hhhcceEecC
Confidence 577776544332 2233456777787 76666663 35788999999999864 123332 111112233
Q ss_pred CeEEEEEe-CC---CeEEEEEeccCCCCCccccccc
Q 036099 246 GVLNYANR-NE---SKLLIWLFDDRHHNNSHSGSKA 277 (279)
Q Consensus 246 G~L~~~~~-~~---~~~~vW~l~~~~~~~~w~w~k~ 277 (279)
.++++++. .+ ..=++++|+. ..|.|.|+
T Consensus 92 trilvFGGMvEYGkYsNdLYELQa----sRWeWkrl 123 (830)
T KOG4152|consen 92 TRILVFGGMVEYGKYSNDLYELQA----SRWEWKRL 123 (830)
T ss_pred ceEEEEccEeeeccccchHHHhhh----hhhhHhhc
Confidence 35555442 11 2333455542 35888876
No 87
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=45.34 E-value=14 Score=31.62 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHhcCC--------hhhhHHHhhhhHHHHhhhcC
Q 036099 4 ISLSEDLITEILCRLP--------VKSVTRFKIVSKAWNNLISN 39 (279)
Q Consensus 4 ~~LP~Dll~eIL~rLP--------~~~l~r~r~VcK~W~~li~~ 39 (279)
+.||.++|.+|+.|.- .++++.++.|||.|+....+
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 5899999999998875 44788999999999987654
No 88
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=44.10 E-value=2e+02 Score=24.40 Aligned_cols=141 Identities=11% Similarity=0.121 Sum_probs=66.1
Q ss_pred CeeEEEEcCCCccccc-cCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCCccccccCC-CCCcee
Q 036099 112 EHRYYVCNPLTKQCVA-IPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNL-KPPGHI 189 (279)
Q Consensus 112 ~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~-~p~~~~ 189 (279)
..+++|||..|..... +|-+. .-...-.|.|+ ++|...+.- ...+.||+..+..=+.....- +-..|
T Consensus 76 DGklIvWDs~TtnK~haipl~s----~WVMtCA~sPS--g~~VAcGGL----dN~Csiy~ls~~d~~g~~~v~r~l~gH- 144 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPS----SWVMTCAYSPS--GNFVACGGL----DNKCSIYPLSTRDAEGNVRVSRELAGH- 144 (343)
T ss_pred CCeEEEEEcccccceeEEecCc----eeEEEEEECCC--CCeEEecCc----CceeEEEecccccccccceeeeeecCc-
Confidence 4566788887766554 44432 23344467775 555433322 557899988754322111110 00011
Q ss_pred eeeccCeEEEeCCeEEEEecCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCCCeEEEEEecc
Q 036099 190 LFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDD 265 (279)
Q Consensus 190 ~~~~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~vW~l~~ 265 (279)
...-+.+-+++++.+-=-.......-.|+++.+-... +-....+-....+..++++.++.+..+..-.+|-+.+
T Consensus 145 tgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~--f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~ 218 (343)
T KOG0286|consen 145 TGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQV--FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS 218 (343)
T ss_pred cceeEEEEEcCCCceEecCCCceEEEEEcccceEEEE--ecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence 1112233444422221111344555567766553332 1111000011223334677777777777777777654
No 89
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=43.74 E-value=72 Score=22.42 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=25.7
Q ss_pred eeEEEEcCCCcc-ccccCCCCccCCCcccEEEecCCCCCceEEEEEE
Q 036099 113 HRYYVCNPLTKQ-CVAIPKARERVLESAPALAFDPRDSSHYKIIRFV 158 (279)
Q Consensus 113 ~~~~v~NP~T~~-~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~ 158 (279)
-+++.+||.+++ |... .......+..|... ..|.|..+.
T Consensus 16 A~v~~~~p~~~~~W~~~------~~~g~v~~v~d~~~-~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV------KGTGVVCFVKDNSR-RSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES------SSEEEEEEEEETTT-TEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC------CeEEEEEEEEECCC-CEEEEEEEE
Confidence 578999999998 9865 12233344556664 677766655
No 90
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=43.30 E-value=99 Score=26.01 Aligned_cols=63 Identities=8% Similarity=0.112 Sum_probs=44.0
Q ss_pred cceEEEEeCCCCCccccccCCCCCceeee-eccCeEEEeCCeEEEEe-cCCeEEEEecCCCeEEEE
Q 036099 163 VSEAEIFSSETKTWINCKLNLKPPGHILF-FVMRSVYSRGGILYSIT-DQGTIVCYNIEAPTEVEI 226 (279)
Q Consensus 163 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~-~~~~~v~~~~g~ly~l~-~~~~i~~fD~~~~~~~~i 226 (279)
+..+++|+..+..|......-.-.-.... ....-+++. |.|-.-. ....+..||..+.+|+.+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~-G~ft~~~~~~~~la~yd~~~~~w~~~ 79 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVG-GNFTLNGTNSSNLATYDFKNQTWSSL 79 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEE-EeeEECCCCceeEEEEecCCCeeeec
Confidence 66889999999999877654210011111 234556777 7666555 578999999999999887
No 91
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.51 E-value=2.5e+02 Score=25.08 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=69.9
Q ss_pred EEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCC---CCccccccCCCCCceeee
Q 036099 115 YYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSET---KTWINCKLNLKPPGHILF 191 (279)
Q Consensus 115 ~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~---~~W~~~~~~~~p~~~~~~ 191 (279)
+.++|-.||..+..=+.. .......-+.-| +.+.+|.... ...+...+... ++|+.... |-.+.
T Consensus 293 ~~lwDv~tgd~~~~y~~~--~~~S~~sc~W~p---Dg~~~V~Gs~---dr~i~~wdlDgn~~~~W~gvr~---~~v~d-- 359 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSG--LGFSVSSCAWCP---DGFRFVTGSP---DRTIIMWDLDGNILGNWEGVRD---PKVHD-- 359 (519)
T ss_pred eeeccCCcchhhhhcccC--cCCCcceeEEcc---CCceeEecCC---CCcEEEecCCcchhhccccccc---ceeEE--
Confidence 556777777766542221 111222222333 3345554433 23444455544 47887755 22111
Q ss_pred eccCeEEEeCCeEEEEecCCeEEEEecCCCeEE-EEecCCCCCCCCCCeeEE-eeCCeEEEEEeCCCeEEEEEeccC
Q 036099 192 FVMRSVYSRGGILYSITDQGTIVCYNIEAPTEV-EIVEVPDENYPYGRGVIE-LCKGVLNYANRNESKLLIWLFDDR 266 (279)
Q Consensus 192 ~~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~~~-~i~~~P~~~~~~~~~~l~-~~~G~L~~~~~~~~~~~vW~l~~~ 266 (279)
-++.-+|-.++-++....|..||.++..=+ .+ ..-. ....+. ..+|++.++......+.+|-++|.
T Consensus 360 ---lait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~-----~its~~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 360 ---LAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQ-----PITSFSISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred ---EEEcCCCcEEEEEecccceeeechhhhhhhccc-cccC-----ceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence 233445245666667777888887776544 33 1111 111222 237999999999999999998853
No 92
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=42.45 E-value=1.9e+02 Score=23.65 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=39.9
Q ss_pred EeCCeEEEEecCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEe---eCCeEEEEEeCCCeEEEEE
Q 036099 199 SRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIEL---CKGVLNYANRNESKLLIWL 262 (279)
Q Consensus 199 ~~~g~ly~l~~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~---~~G~L~~~~~~~~~~~vW~ 262 (279)
.+ |.||-++..+.|+.+|+.+..-+.+..-+....-.....-.+ --.+|.++...+..+++-.
T Consensus 37 a~-G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~~GqNlR~np 102 (236)
T PF14339_consen 37 AN-GQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSNTGQNLRLNP 102 (236)
T ss_pred CC-CCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEccCCcEEEECC
Confidence 45 999999999999999999999888722222211111111122 2467887777666665543
No 93
>PRK00178 tolB translocation protein TolB; Provisional
Probab=41.04 E-value=2.6e+02 Score=24.81 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=57.8
Q ss_pred CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCCccccccCCCCCceeee
Q 036099 112 EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILF 191 (279)
Q Consensus 112 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~ 191 (279)
..+++++|..|++...+...+. ......+.+. +++-++... .+....+.+++.+++..+.+... +. .
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g----~~~~~~~SpD--G~~la~~~~-~~g~~~Iy~~d~~~~~~~~lt~~--~~-~--- 288 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEG----LNGAPAWSPD--GSKLAFVLS-KDGNPEIYVMDLASRQLSRVTNH--PA-I--- 288 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCC----CcCCeEECCC--CCEEEEEEc-cCCCceEEEEECCCCCeEEcccC--CC-C---
Confidence 4578999999998877765432 1112445553 443333332 22345778889988876654332 11 0
Q ss_pred eccCe-EEEeCCeEEEEec---CCeEEEEecCCCeEEEE
Q 036099 192 FVMRS-VYSRGGILYSITD---QGTIVCYNIEAPTEVEI 226 (279)
Q Consensus 192 ~~~~~-v~~~~g~ly~l~~---~~~i~~fD~~~~~~~~i 226 (279)
...+ ..-+|..+++... ...|..+|+.+.+.+.+
T Consensus 289 -~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 289 -DTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred -cCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 1111 1224245777663 35788899988887766
No 94
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=39.60 E-value=2.7e+02 Score=24.55 Aligned_cols=105 Identities=17% Similarity=0.187 Sum_probs=54.9
Q ss_pred CceEEEEEEeccccceEEEEeCCCC-----CccccccCCCCCceeeeeccCeE-EEeCCeEEEEe----cCCeEEEEecC
Q 036099 150 SHYKIIRFVRARMVSEAEIFSSETK-----TWINCKLNLKPPGHILFFVMRSV-YSRGGILYSIT----DQGTIVCYNIE 219 (279)
Q Consensus 150 ~~ykvv~~~~~~~~~~~~vy~s~~~-----~W~~~~~~~~p~~~~~~~~~~~v-~~~~g~ly~l~----~~~~i~~fD~~ 219 (279)
+.|-++..........+.+.+..++ .|+.+.... +.. ...+ ..+ +.+|.++ ..+.|++.|+.
T Consensus 238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~------~~~v~~~~-~~~yi~Tn~~a~~~~l~~~~l~ 309 (414)
T PF02897_consen 238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-DGV------EYYVDHHG-DRLYILTNDDAPNGRLVAVDLA 309 (414)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-SS-------EEEEEEET-TEEEEEE-TT-TT-EEEEEETT
T ss_pred ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-Cce------EEEEEccC-CEEEEeeCCCCCCcEEEEeccc
Confidence 5555555444322245555566654 565554321 110 1112 235 8999988 36899999998
Q ss_pred CCe---EEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCCC--eEEEEEec
Q 036099 220 APT---EVEIVEVPDENYPYGRGVIELCKGVLNYANRNES--KLLIWLFD 264 (279)
Q Consensus 220 ~~~---~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~~--~~~vW~l~ 264 (279)
+.. |..+ -+|... ......+...++.|.+....+. +|.|+.++
T Consensus 310 ~~~~~~~~~~-l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 310 DPSPAEWWTV-LIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp STSGGGEEEE-EE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ccccccceeE-EcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 865 6644 344321 1112333445788888887764 44444444
No 95
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=39.00 E-value=1.7e+02 Score=25.02 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=38.1
Q ss_pred CeEEEEe-cCCeEEEEecCCCe-EEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCCCeEEEEEec
Q 036099 202 GILYSIT-DQGTIVCYNIEAPT-EVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFD 264 (279)
Q Consensus 202 g~ly~l~-~~~~i~~fD~~~~~-~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~vW~l~ 264 (279)
|.+|..+ ..+.|-.+|=.+++ .+.| .-..+ ...-...+..-+|+-.+....+..+.+|++.
T Consensus 273 ~~lYvTaSkDG~IklwDGVS~rCv~t~-~~AH~-gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 273 GSLYVTASKDGAIKLWDGVSNRCVRTI-GNAHG-GSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ccEEEEeccCCcEEeeccccHHHHHHH-HhhcC-CceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 8999988 67888888865544 4444 21111 0011122334578888888888888999864
No 96
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.50 E-value=32 Score=25.30 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=18.3
Q ss_pred eEEEeCCeEEEEec-----CCeEEEEecCCC
Q 036099 196 SVYSRGGILYSITD-----QGTIVCYNIEAP 221 (279)
Q Consensus 196 ~v~~~~g~ly~l~~-----~~~i~~fD~~~~ 221 (279)
.-.++||.|||+-+ ...|+.|+..+.
T Consensus 42 ~Ell~GGSlYWVikg~i~~RQ~Il~i~~~~~ 72 (137)
T PF07370_consen 42 DELLDGGSLYWVIKGQIQCRQRILDIEEVTD 72 (137)
T ss_pred HHhccCCcEEEEECCEEEEeeeeeeeeEecC
Confidence 34565599999883 567778876553
No 97
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=33.78 E-value=5.4e+02 Score=26.40 Aligned_cols=161 Identities=12% Similarity=0.033 Sum_probs=82.2
Q ss_pred ccCcEEEEeeecCCeeEEEEcCCCccccccCCCCc-----------cCCCcccEEEecCCCCCceEEEEEEeccccceEE
Q 036099 99 SCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARE-----------RVLESAPALAFDPRDSSHYKIIRFVRARMVSEAE 167 (279)
Q Consensus 99 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~-----------~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~ 167 (279)
..+|.+.+.. .....+.++|+.++....+-.... .......++.+++. +.+-.|.-. ....+.
T Consensus 692 p~~g~LyVad-~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd--G~~LYVADs---~n~~Ir 765 (1057)
T PLN02919 692 PVNEKVYIAM-AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPD--LKELYIADS---ESSSIR 765 (1057)
T ss_pred cCCCeEEEEE-CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCC--CCEEEEEEC---CCCeEE
Confidence 3366666665 345678888988776543211100 01122335666664 333222211 145788
Q ss_pred EEeCCCCCccccccC--CCCCce------------eeeeccCeEEEeC-CeEEEEe-cCCeEEEEecCCCeEEEEecCC-
Q 036099 168 IFSSETKTWINCKLN--LKPPGH------------ILFFVMRSVYSRG-GILYSIT-DQGTIVCYNIEAPTEVEIVEVP- 230 (279)
Q Consensus 168 vy~s~~~~W~~~~~~--~~p~~~------------~~~~~~~~v~~~~-g~ly~l~-~~~~i~~fD~~~~~~~~i~~~P- 230 (279)
+|+..++.-+..... ..+... .....-.++.++. |.+|... ....|..||+.+.....+....
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~ 845 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK 845 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC
Confidence 888776542211100 000000 0011112333331 7887765 5789999999998877662111
Q ss_pred ----CCC---CCCCC--eeEEeeCCeEEEEEeCCCeEEEEEecc
Q 036099 231 ----DEN---YPYGR--GVIELCKGVLNYANRNESKLLIWLFDD 265 (279)
Q Consensus 231 ----~~~---~~~~~--~~l~~~~G~L~~~~~~~~~~~vW~l~~ 265 (279)
+.. ..... ......+|+|+++......|.+|-++.
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 000 00011 222335789998888889999998764
No 98
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.74 E-value=3e+02 Score=23.48 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=41.3
Q ss_pred EEEEEEeccccceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEe------cCCeEEEEecCCCeEEEE
Q 036099 153 KIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSIT------DQGTIVCYNIEAPTEVEI 226 (279)
Q Consensus 153 kvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~------~~~~i~~fD~~~~~~~~i 226 (279)
.+|++... ....+.+|+..++.=...-. +...+.+.......-+ |.+-+.+ ..+.|-+||.. +.+..+
T Consensus 18 ~avafaRR-PG~~~~v~D~~~g~~~~~~~---a~~gRHFyGHg~fs~d-G~~LytTEnd~~~g~G~IgVyd~~-~~~~ri 91 (305)
T PF07433_consen 18 EAVAFARR-PGTFALVFDCRTGQLLQRLW---APPGRHFYGHGVFSPD-GRLLYTTENDYETGRGVIGVYDAA-RGYRRI 91 (305)
T ss_pred eEEEEEeC-CCcEEEEEEcCCCceeeEEc---CCCCCEEecCEEEcCC-CCEEEEeccccCCCcEEEEEEECc-CCcEEE
Confidence 34444332 25678888888875322211 1223333444444445 7666665 47899999999 556655
Q ss_pred ecCCC
Q 036099 227 VEVPD 231 (279)
Q Consensus 227 ~~~P~ 231 (279)
.++|-
T Consensus 92 ~E~~s 96 (305)
T PF07433_consen 92 GEFPS 96 (305)
T ss_pred eEecC
Confidence 45554
No 99
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=33.66 E-value=2.3e+02 Score=23.29 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=45.1
Q ss_pred ccCeEEEeCCeEEEEe-cCCeEEEEecCCCe-EEEEecCCCCCCCC---------CCeeEEeeCCeEEEEEeCC---CeE
Q 036099 193 VMRSVYSRGGILYSIT-DQGTIVCYNIEAPT-EVEIVEVPDENYPY---------GRGVIELCKGVLNYANRNE---SKL 258 (279)
Q Consensus 193 ~~~~v~~~~g~ly~l~-~~~~i~~fD~~~~~-~~~i~~~P~~~~~~---------~~~~l~~~~G~L~~~~~~~---~~~ 258 (279)
...-|..+ |.+|+.. ....|+.||+.++. .... .+|...... ....++..+..|.++.... ..+
T Consensus 70 gTg~VVyn-Gs~yynk~~t~~ivky~l~~~~~~~~~-~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~i 147 (249)
T KOG3545|consen 70 GTGHVVYN-GSLYYNKAGTRNIIKYDLETRTVAGSA-ALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTI 147 (249)
T ss_pred ccceEEEc-ceEEeeccCCcceEEEEeecceeeeee-eccccccCCCcccccCCCccccceecccceeEEecccccCCcE
Confidence 45668899 9999977 67889999999954 3334 566642211 1244555555676666532 555
Q ss_pred EEEEecc
Q 036099 259 LIWLFDD 265 (279)
Q Consensus 259 ~vW~l~~ 265 (279)
.|=.|+.
T Consensus 148 v~skLdp 154 (249)
T KOG3545|consen 148 VLSKLDP 154 (249)
T ss_pred EeeccCH
Confidence 5566654
No 100
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=32.66 E-value=2.1e+02 Score=26.11 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=25.9
Q ss_pred cCeEEEeCCeEEEEecCCeEEEEecCCCe--EEE
Q 036099 194 MRSVYSRGGILYSITDQGTIVCYNIEAPT--EVE 225 (279)
Q Consensus 194 ~~~v~~~~g~ly~l~~~~~i~~fD~~~~~--~~~ 225 (279)
..|+..+ |.+|.....+.+.++|..+.+ |+.
T Consensus 55 ~sPvv~~-g~vy~~~~~g~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 55 GTPLVVD-GDMYFTTSHSALFALDAATGKVLWRY 87 (488)
T ss_pred cCCEEEC-CEEEEeCCCCcEEEEECCCChhhcee
Confidence 3678888 999999888999999988754 765
No 101
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=31.60 E-value=1.8e+02 Score=20.16 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=31.2
Q ss_pred eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc--cceEEEE
Q 036099 113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM--VSEAEIF 169 (279)
Q Consensus 113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~--~~~~~vy 169 (279)
.++++.+|.+++|...- .......+..|+.. ..|.|........ ...+++|
T Consensus 9 a~v~~~~~~~~~W~~~~-----~~~g~v~~~~d~~~-~~y~i~~~~~~~~~vv~~~~l~ 61 (104)
T cd00837 9 AQVYTADPSTGKWVPAS-----GGTGAVSLVKDSTR-NTYRIRGVDIQDQKVIWNQEIY 61 (104)
T ss_pred EEEEEECCCCCceEECC-----CCeEEEEEEEECCC-CEEEEEEEecCCCeEEEEEEec
Confidence 57899999999998631 12234455567665 7787777654422 3334444
No 102
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.99 E-value=5e+02 Score=25.13 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=82.2
Q ss_pred CCCCCCCCCceEeeccCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccc
Q 036099 85 SLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVS 164 (279)
Q Consensus 85 ~~~p~~~~~~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~ 164 (279)
.|.| ...++.+.+|-||-+-+.... ..+++.||-+ . ....++.|-|. |.|.||+-+..
T Consensus 416 aFnP-vDDryFiSGSLD~KvRiWsI~-d~~Vv~W~Dl-------~-------~lITAvcy~Pd--Gk~avIGt~~G---- 473 (712)
T KOG0283|consen 416 AFNP-VDDRYFISGSLDGKVRLWSIS-DKKVVDWNDL-------R-------DLITAVCYSPD--GKGAVIGTFNG---- 473 (712)
T ss_pred Eecc-cCCCcEeecccccceEEeecC-cCeeEeehhh-------h-------hhheeEEeccC--CceEEEEEecc----
Confidence 3444 445666777777777666632 3444444322 1 23346677774 88999998744
Q ss_pred eEEEEeCCCCCccccccCCC-C----CceeeeeccCeEEEeCCeEEEEecCCeEEEEecCCCeEEEEecCCCCCCCCCCe
Q 036099 165 EAEIFSSETKTWINCKLNLK-P----PGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRG 239 (279)
Q Consensus 165 ~~~vy~s~~~~W~~~~~~~~-p----~~~~~~~~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~ 239 (279)
.|.+|+....+-..-..... . ...+.... ....-+-..+-.......|-.||..+......-+-......-...
T Consensus 474 ~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~-Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~A 552 (712)
T KOG0283|consen 474 YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGL-QFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISA 552 (712)
T ss_pred EEEEEEccCCeEEEeeeEeeccCccccCceeeee-EecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceee
Confidence 68888877664322111100 0 00111110 000001022334446778888888654432210111111111124
Q ss_pred eEEeeCCeEEEEEeCCCeEEEEEeccCC
Q 036099 240 VIELCKGVLNYANRNESKLLIWLFDDRH 267 (279)
Q Consensus 240 ~l~~~~G~L~~~~~~~~~~~vW~l~~~~ 267 (279)
.+.. +|+=.+...++..+.||.++...
T Consensus 553 sfs~-Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 553 SFSS-DGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred eEcc-CCCEEEEeecCceEEEEeCCCCc
Confidence 4444 88887777888999999986443
No 103
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=30.59 E-value=2.3e+02 Score=23.37 Aligned_cols=59 Identities=8% Similarity=0.054 Sum_probs=33.3
Q ss_pred CeEEEeC--CeEEEEe-cCCeEEEEecCCCeEEEEecCCCCCC----CCCC--eeEEeeCCeEEEEEeC
Q 036099 195 RSVYSRG--GILYSIT-DQGTIVCYNIEAPTEVEIVEVPDENY----PYGR--GVIELCKGVLNYANRN 254 (279)
Q Consensus 195 ~~v~~~~--g~ly~l~-~~~~i~~fD~~~~~~~~i~~~P~~~~----~~~~--~~l~~~~G~L~~~~~~ 254 (279)
+++.++. |.||.|. .+..|+.+|...+..+.+ .+..... ...+ +.-.+.+|.||++...
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEETT
T ss_pred cceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEcCC
Confidence 4455553 7899999 688999999888888888 7776411 0111 2223358999998864
No 104
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=30.06 E-value=38 Score=21.01 Aligned_cols=42 Identities=7% Similarity=0.042 Sum_probs=22.4
Q ss_pred CCCCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhh----hcCCCCCC
Q 036099 1 MEQISLSEDLITEILCRLPVKSVTRFKIVSKAWNNL----ISNVCIPR 44 (279)
Q Consensus 1 ~~~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~l----i~~~~F~~ 44 (279)
|+++++=+=++.--|.-+|..++ ++..|.+|+.. +-+|.+.+
T Consensus 1 M~i~DilQli~lcALIf~pLgyl--~~r~~~r~r~~~r~~~~~pRYlK 46 (62)
T TIGR03493 1 MNISDILQLVLLCALIFFPLGYL--ARRSLRRIRTTLRLRLASPRYLK 46 (62)
T ss_pred CCHHHHHHHHHHHHHHHHhHHHH--HHhhhHHHHHHHHHhcCCccccC
Confidence 34433333344444667898887 34455565554 44555444
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=29.41 E-value=2.8e+02 Score=25.53 Aligned_cols=55 Identities=11% Similarity=0.260 Sum_probs=36.2
Q ss_pred cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEE-eeCCeEEEEEeCCCeEEEEEecc
Q 036099 209 DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIE-LCKGVLNYANRNESKLLIWLFDD 265 (279)
Q Consensus 209 ~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~-~~~G~L~~~~~~~~~~~vW~l~~ 265 (279)
+...+-..|+++.+-+.-.+++.....+ ..|. .-+.+||+.+..+.+|.||-|.+
T Consensus 485 eastlsiWDLAapTprikaeltssapaC--yALa~spDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 485 EASTLSIWDLAAPTPRIKAELTSSAPAC--YALAISPDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred ccceeeeeeccCCCcchhhhcCCcchhh--hhhhcCCccceeeeeccCCcEEEEEccc
Confidence 3456677788887776643555421111 2233 34889999999999999998754
No 106
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=29.10 E-value=2.9e+02 Score=22.72 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=50.3
Q ss_pred cceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEe----cCCeEEEEecCC----CeEEEEecCCCCCC
Q 036099 163 VSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSIT----DQGTIVCYNIEA----PTEVEIVEVPDENY 234 (279)
Q Consensus 163 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~----~~~~i~~fD~~~----~~~~~i~~~P~~~~ 234 (279)
.....+||..+++++..... ...++....+.-| |.+.-.+ ....+-.|+..+ ..|.+. .-.....
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~-----td~FCSgg~~L~d-G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~-~~~m~~~ 117 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQ-----TDTFCSGGAFLPD-GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTES-PNDMQSG 117 (243)
T ss_pred eEEEEEEecCCCcEEeccCC-----CCCcccCcCCCCC-CCEEEeCCCCccccceEEEecCCCCCCCCceEC-cccccCC
Confidence 33578899999999877543 2223333344445 7666555 345677788765 445543 1111111
Q ss_pred CCCCeeEEeeCCeEEEEEeCC-CeEEEEE
Q 036099 235 PYGRGVIELCKGVLNYANRNE-SKLLIWL 262 (279)
Q Consensus 235 ~~~~~~l~~~~G~L~~~~~~~-~~~~vW~ 262 (279)
....-...-.+|++.++.... ...+.|=
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~t~E~~P 146 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNPTYEFWP 146 (243)
T ss_pred CccccceECCCCCEEEEeCcCCCcccccC
Confidence 112222233378888888654 4455443
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=29.06 E-value=4.3e+02 Score=23.81 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=50.7
Q ss_pred eEeeccCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCC
Q 036099 95 KLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETK 174 (279)
Q Consensus 95 ~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~ 174 (279)
.+-.+-||.-+.... +...+.+|+-. +.+..+..+.........+.||.. |.|-++. +....+.+|...+.
T Consensus 394 ~i~FsENGY~Lat~a-dd~~V~lwDLR--Kl~n~kt~~l~~~~~v~s~~fD~S--Gt~L~~~----g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 394 AISFSENGYWLATAA-DDGSVKLWDLR--KLKNFKTIQLDEKKEVNSLSFDQS--GTYLGIA----GSDLQVYICKKKTK 464 (506)
T ss_pred EEEeccCceEEEEEe-cCCeEEEEEeh--hhcccceeeccccccceeEEEcCC--CCeEEee----cceeEEEEEecccc
Confidence 345577887766653 23346677642 223344433333345677888985 7887777 23678888899999
Q ss_pred CccccccC
Q 036099 175 TWINCKLN 182 (279)
Q Consensus 175 ~W~~~~~~ 182 (279)
.|+.+...
T Consensus 465 ~W~~~~~~ 472 (506)
T KOG0289|consen 465 SWTEIKEL 472 (506)
T ss_pred cceeeehh
Confidence 99998765
No 108
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=28.87 E-value=3.4e+02 Score=22.57 Aligned_cols=66 Identities=9% Similarity=0.063 Sum_probs=38.3
Q ss_pred cCCeEEEEecCCCeEEEEecCCCCCCCCCC----eeEEeeCCeEEEEEeCCCeEEEEEeccC-------CCCCccccc
Q 036099 209 DQGTIVCYNIEAPTEVEIVEVPDENYPYGR----GVIELCKGVLNYANRNESKLLIWLFDDR-------HHNNSHSGS 275 (279)
Q Consensus 209 ~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~----~~l~~~~G~L~~~~~~~~~~~vW~l~~~-------~~~~~w~w~ 275 (279)
.++..++.++-+...-.- -.|-....... .++..-+++....+..+.+..||..++. ++++.|.|-
T Consensus 187 nkG~cyvW~l~~~~~~s~-l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWd 263 (311)
T KOG0315|consen 187 NKGNCYVWRLLNHQTASE-LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWD 263 (311)
T ss_pred CCccEEEEEccCCCcccc-ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEe
Confidence 455556666555433222 23332111111 3344457888888888899999998776 345678885
No 109
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.80 E-value=3.5e+02 Score=22.70 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=37.6
Q ss_pred CceEEEEEEeccccceEEEEeCCCC--CccccccCCCCCceeeeeccCeEEEeCCeEEEEecCCeEEEEecCCCeEEEEe
Q 036099 150 SHYKIIRFVRARMVSEAEIFSSETK--TWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIV 227 (279)
Q Consensus 150 ~~ykvv~~~~~~~~~~~~vy~s~~~--~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~~~~i~ 227 (279)
++|.|+.-+.. ...+.++.|| .|........ ..+..+-.++|.+|.-.......++|..+..--.-.
T Consensus 63 gdfVV~GCy~g----~lYfl~~~tGs~~w~f~~~~~v-------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 63 GDFVVLGCYSG----GLYFLCVKTGSQIWNFVILETV-------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred CCEEEEEEccC----cEEEEEecchhheeeeeehhhh-------ccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 78866665532 3444455555 5865533210 111223344255555557788888888876533322
Q ss_pred cCCC
Q 036099 228 EVPD 231 (279)
Q Consensus 228 ~~P~ 231 (279)
+.|.
T Consensus 132 kcgG 135 (354)
T KOG4649|consen 132 KCGG 135 (354)
T ss_pred ccCC
Confidence 4554
No 110
>PF13497 DUF4121: Domain of unknown function (DUF4121)
Probab=28.68 E-value=78 Score=25.90 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=47.0
Q ss_pred ccCeEEEeCCeEEEEe-------cCCeEEEEecCCCeEEEEecC---CCCCC----CCCC----------eeEEeeCCeE
Q 036099 193 VMRSVYSRGGILYSIT-------DQGTIVCYNIEAPTEVEIVEV---PDENY----PYGR----------GVIELCKGVL 248 (279)
Q Consensus 193 ~~~~v~~~~g~ly~l~-------~~~~i~~fD~~~~~~~~i~~~---P~~~~----~~~~----------~~l~~~~G~L 248 (279)
...+.+-| |.+|+.+ ....=+--|..|++|+.+ .+ |+... .+.. ..+..++|.|
T Consensus 126 GH~Gac~N-G~V~F~A~V~lW~y~EP~plYg~~tT~~w~k~-~i~k~~e~e~~~~Y~~~~is~~~e~e~~~f~~d~eG~v 203 (262)
T PF13497_consen 126 GHCGACAN-GSVYFDAKVPLWEYREPEPLYGDYTTEEWRKI-HINKNPEPEGGNLYRGEDISFYDEEEFRQFLGDYEGTV 203 (262)
T ss_pred ccccccCC-ceEEEEEEeeeEEecCCCcccCCccceeEEEE-EEEccCCccCCceEeecceEEeCHHHHHHHHHHhcceE
Confidence 44566777 8888877 122223347889999987 55 22110 0111 1234566766
Q ss_pred EEEEeCCCeEEEEEeccCCCCCc-ccccccC
Q 036099 249 NYANRNESKLLIWLFDDRHHNNS-HSGSKAA 278 (279)
Q Consensus 249 ~~~~~~~~~~~vW~l~~~~~~~~-w~w~k~~ 278 (279)
+--... ..|.||-........+ +-|+|+-
T Consensus 204 F~g~~~-~~~VlW~yr~e~~~l~~~EW~~~~ 233 (262)
T PF13497_consen 204 FKGNWP-NSIVLWCYRMEWVFLSPEEWEKMD 233 (262)
T ss_pred eccCCC-CcEEEEEEeccceEcCHHHHhhcC
Confidence 544433 4599999775443333 6687763
No 111
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=28.48 E-value=1.1e+02 Score=18.55 Aligned_cols=27 Identities=15% Similarity=0.455 Sum_probs=22.3
Q ss_pred eCCeEEEEEeCCCeEEEEEeccCCCCC
Q 036099 244 CKGVLNYANRNESKLLIWLFDDRHHNN 270 (279)
Q Consensus 244 ~~G~L~~~~~~~~~~~vW~l~~~~~~~ 270 (279)
.+|-.+++...+.-.-||.+.+.+..+
T Consensus 28 ~EG~MYLvaL~dYP~GiWFFNE~~~~d 54 (62)
T PF10781_consen 28 NEGTMYLVALEDYPAGIWFFNEKDSPD 54 (62)
T ss_pred cCcEEEEEEcCcCCcceEEEecCCCCC
Confidence 478999999999889999998876543
No 112
>PRK10708 hypothetical protein; Provisional
Probab=27.73 E-value=1.1e+02 Score=18.58 Aligned_cols=27 Identities=22% Similarity=0.591 Sum_probs=22.2
Q ss_pred eCCeEEEEEeCCCeEEEEEeccCCCCC
Q 036099 244 CKGVLNYANRNESKLLIWLFDDRHHNN 270 (279)
Q Consensus 244 ~~G~L~~~~~~~~~~~vW~l~~~~~~~ 270 (279)
.+|-.+++...+.-.-||.+.+.+..+
T Consensus 28 ~EG~MyLvaL~dYP~GiWFFNE~~~~~ 54 (62)
T PRK10708 28 SEGTMYLVSLEDYPLGIWFFNEAGHQD 54 (62)
T ss_pred cCcEEEEEEcCcCCCceEEEeccCCCC
Confidence 478899999999888999998876543
No 113
>TIGR02940 anfO_nitrog Fe-only nitrogenase accessory protein AnfO. Members of this protein family, called Anf1 in Rhodobacter capsulatus and AnfO in Azotobacter vinelandii, are found only in species with the Fe-only nitrogenase and are encoded immediately downstream of the structural genes in the above named species.
Probab=27.49 E-value=1.1e+02 Score=24.54 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=24.8
Q ss_pred CeEEEEecCCeEEEEecCCCeEEEEecCCCC
Q 036099 202 GILYSITDQGTIVCYNIEAPTEVEIVEVPDE 232 (279)
Q Consensus 202 g~ly~l~~~~~i~~fD~~~~~~~~i~~~P~~ 232 (279)
|.+-=+...+.|.+|.-..+.|.....+|..
T Consensus 10 G~~~s~~e~G~i~vye~~~~~W~~~~ei~~~ 40 (214)
T TIGR02940 10 GEISSIFDKGFILLFEEDGGEWKVLTRIENA 40 (214)
T ss_pred CCEecccCCeEEEEEecCCCeEEEEEEEEec
Confidence 5655566789999999999999997666664
No 114
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=27.42 E-value=75 Score=22.27 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHHhhh
Q 036099 3 QISLSEDLITEILCRLPVKSVTRFKIV 29 (279)
Q Consensus 3 ~~~LP~Dll~eIL~rLP~~~l~r~r~V 29 (279)
+..+|.+++.-||.++.+..|.+.-.-
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~ 30 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDN 30 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHh
Confidence 467999999999999999999886443
No 115
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=26.73 E-value=4e+02 Score=22.72 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=40.8
Q ss_pred CeEEEeCCeEEEEec--------CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEee-CCeEEEEEeCC--CeEEEEEe
Q 036099 195 RSVYSRGGILYSITD--------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELC-KGVLNYANRNE--SKLLIWLF 263 (279)
Q Consensus 195 ~~v~~~~g~ly~l~~--------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~-~G~L~~~~~~~--~~~~vW~l 263 (279)
.++..++|.|.+... ...++..|-..++|+.. ..+..........+.+. +|+|.+..... ..+.+..-
T Consensus 150 ~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~-~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S 228 (351)
T cd00260 150 SGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLG-EGVNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYES 228 (351)
T ss_pred CeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEEC-CCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEE
Confidence 456664477776541 13344455556789875 54432122334566666 89998877664 55555555
Q ss_pred ccC
Q 036099 264 DDR 266 (279)
Q Consensus 264 ~~~ 266 (279)
+|.
T Consensus 229 ~D~ 231 (351)
T cd00260 229 RDM 231 (351)
T ss_pred cCC
Confidence 543
No 116
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=26.58 E-value=3.2e+02 Score=24.05 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=30.7
Q ss_pred CcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCC
Q 036099 101 NGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPR 147 (279)
Q Consensus 101 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~ 147 (279)
+|..+......+..+.||+|.|++...|++.. ......+-+.|.
T Consensus 206 dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g---lgg~slLkwSPd 249 (445)
T KOG2139|consen 206 DGTILVTASFGSSSIMIWDPDTGQKIPLIPKG---LGGFSLLKWSPD 249 (445)
T ss_pred CCCEEeecccCcceEEEEcCCCCCcccccccC---CCceeeEEEcCC
Confidence 67777766566788999999999999998542 222234455664
No 117
>PF09582 AnfO_nitrog: Iron only nitrogenase protein AnfO (AnfO_nitrog); InterPro: IPR014287 Proteins in this entry include Anf1 from Rhodobacter capsulatus (Rhodopseudomonas capsulata) and AnfO from Azotobacter vinelandii. They are found exclusively in species which contain the iron-only nitrogenase, and are encoded immediately downstream of the structural genes for the nitrogenase enzyme in these species.
Probab=26.00 E-value=77 Score=25.18 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=23.2
Q ss_pred CeEEEEecCCeEEEEecCCCeEEEEecCCCC
Q 036099 202 GILYSITDQGTIVCYNIEAPTEVEIVEVPDE 232 (279)
Q Consensus 202 g~ly~l~~~~~i~~fD~~~~~~~~i~~~P~~ 232 (279)
|..-=+...+.|.+|.-....|+.+...|..
T Consensus 11 g~~~s~~e~G~v~vy~~~~g~W~~~~e~~f~ 41 (202)
T PF09582_consen 11 GETASFYEPGFVRVYEKDDGKWKVIREIPFE 41 (202)
T ss_pred CCCccCCCCcEEEEEECCCCceEEeEEEEec
Confidence 3443344678999999999999998667764
No 118
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=25.75 E-value=3.5e+02 Score=24.70 Aligned_cols=56 Identities=5% Similarity=0.010 Sum_probs=39.2
Q ss_pred CeEEEeCCeEEEEecCCeEEEEecCCCe--EEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCC
Q 036099 195 RSVYSRGGILYSITDQGTIVCYNIEAPT--EVEIVEVPDENYPYGRGVIELCKGVLNYANRNE 255 (279)
Q Consensus 195 ~~v~~~~g~ly~l~~~~~i~~fD~~~~~--~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~ 255 (279)
+++..+ |.+|.-+..+.|.+||..+.+ |+ . ++|... ...+.+...+|++++....+
T Consensus 401 ~~~~~g-~~v~~g~~dG~l~ald~~tG~~lW~-~-~~~~~~--~a~P~~~~~~g~~yv~~~~g 458 (488)
T cd00216 401 SLATAG-NLVFAGAADGYFRAFDATTGKELWK-F-RTPSGI--QATPMTYEVNGKQYVGVMVG 458 (488)
T ss_pred ceEecC-CeEEEECCCCeEEEEECCCCceeeE-E-ECCCCc--eEcCEEEEeCCEEEEEEEec
Confidence 345556 888888888999999998865 55 3 666532 22344455689999988765
No 119
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=24.84 E-value=3.8e+02 Score=22.22 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=34.6
Q ss_pred CeEEEEecCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCCCeEEEEEec
Q 036099 202 GILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFD 264 (279)
Q Consensus 202 g~ly~l~~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~vW~l~ 264 (279)
|.+..-+.++.+...|+++.+++.. +-.. .+.-...+......=.+.+.++.+.+||.++
T Consensus 127 nSi~~AgGD~~~y~~dlE~G~i~r~--~rGH-tDYvH~vv~R~~~~qilsG~EDGtvRvWd~k 186 (325)
T KOG0649|consen 127 NSILFAGGDGVIYQVDLEDGRIQRE--YRGH-TDYVHSVVGRNANGQILSGAEDGTVRVWDTK 186 (325)
T ss_pred CcEEEecCCeEEEEEEecCCEEEEE--EcCC-cceeeeeeecccCcceeecCCCccEEEEecc
Confidence 6666667889999999999999885 2221 1111122222222223444555667777654
No 120
>COG3196 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.58 E-value=58 Score=24.17 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHhcCC
Q 036099 4 ISLSEDLITEILCRLP 19 (279)
Q Consensus 4 ~~LP~Dll~eIL~rLP 19 (279)
...|+|+++|++.|-|
T Consensus 82 ~~vp~d~~~Ev~ERTP 97 (183)
T COG3196 82 DDVPEDVTEEVLERTP 97 (183)
T ss_pred CCChHHHHHHHHhcCC
Confidence 5789999999999999
No 121
>PRK04043 tolB translocation protein TolB; Provisional
Probab=24.39 E-value=5.2e+02 Score=23.13 Aligned_cols=116 Identities=11% Similarity=0.061 Sum_probs=66.8
Q ss_pred eccCcE--EEEeeec-CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCC
Q 036099 98 DSCNGL--ILLGSSL-REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETK 174 (279)
Q Consensus 98 ~s~~Gl--ll~~~~~-~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~ 174 (279)
-|-+|- +.+.... ....+++.|..|++-+.|-..+. . .....+.+. +..-++.... .....+.+++..++
T Consensus 195 wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g--~--~~~~~~SPD--G~~la~~~~~-~g~~~Iy~~dl~~g 267 (419)
T PRK04043 195 WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG--M--LVVSDVSKD--GSKLLLTMAP-KGQPDIYLYDTNTK 267 (419)
T ss_pred ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC--c--EEeeEECCC--CCEEEEEEcc-CCCcEEEEEECCCC
Confidence 344563 4443433 35689999999999887754321 1 112234443 4444444332 33667888898888
Q ss_pred CccccccCCCCCceeeeeccCeEEEeCCeEEEEec---CCeEEEEecCCCeEEEE
Q 036099 175 TWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD---QGTIVCYNIEAPTEVEI 226 (279)
Q Consensus 175 ~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~---~~~i~~fD~~~~~~~~i 226 (279)
.++.+... +.. ...+...-+|..+|+... ...|...|+.+.+.+.+
T Consensus 268 ~~~~LT~~--~~~----d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 268 TLTQITNY--PGI----DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred cEEEcccC--CCc----cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 88766443 210 011122234246888773 34899999999888665
No 122
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=23.99 E-value=4.3e+02 Score=22.06 Aligned_cols=63 Identities=22% Similarity=0.193 Sum_probs=39.8
Q ss_pred cceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEe-cCCeEEEEecCCC-eEEEEecCCCC
Q 036099 163 VSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSIT-DQGTIVCYNIEAP-TEVEIVEVPDE 232 (279)
Q Consensus 163 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~-~~~~i~~fD~~~~-~~~~i~~~P~~ 232 (279)
...+..|+.++++=...... |... +...-..++ +++|-|+ .++..+.||..+- .-..+ +.|.+
T Consensus 67 ~S~l~~~d~~tg~~~~~~~l--~~~~---FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~~-~y~~E 131 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSVPL--PPRY---FGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGTF-PYPGE 131 (264)
T ss_dssp EEEEEEEETTTSSEEEEEE---TTT-----EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEE-E-SSS
T ss_pred cEEEEEEECCCCcEEEEEEC--Cccc---cceeEEEEC-CEEEEEEecCCeEEEEccccceEEEEE-ecCCc
Confidence 77888999999863322222 2211 222334566 9999999 6889999999874 35556 66643
No 123
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.76 E-value=5.6e+02 Score=23.33 Aligned_cols=130 Identities=12% Similarity=0.194 Sum_probs=67.0
Q ss_pred cCCCccccccCCCCcc-CCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCCccccccCCCCCceeeeeccCeE
Q 036099 119 NPLTKQCVAIPKARER-VLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSV 197 (279)
Q Consensus 119 NP~T~~~~~lP~~~~~-~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v 197 (279)
+|-++-|.+.-.++.. .......+.|.|..+.+|.|-. ..++.+|++.+..=+..-.... . .-....+
T Consensus 8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~------S~rvqly~~~~~~~~k~~srFk-~----~v~s~~f 76 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTS------SVRVQLYSSVTRSVRKTFSRFK-D----VVYSVDF 76 (487)
T ss_pred CccchhhhhhcccccccccCcceeEecCCCCCCceEEec------ccEEEEEecchhhhhhhHHhhc-c----ceeEEEe
Confidence 4555556654322221 2355667778886544554444 5689999998764322111110 0 1112334
Q ss_pred EEeCCeEEEEe-cCCeEEEEecCCCe-EEEEe--cCCCCCCCCCCeeEEeeCCeEEEEEeCCCeEEEEEecc
Q 036099 198 YSRGGILYSIT-DQGTIVCYNIEAPT-EVEIV--EVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDD 265 (279)
Q Consensus 198 ~~~~g~ly~l~-~~~~i~~fD~~~~~-~~~i~--~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~vW~l~~ 265 (279)
..+ |.|...+ .++.|-+||..+.. .+.+. ..|-. -..+..-++.+...+.++....+|.+..
T Consensus 77 R~D-G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~-----~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 77 RSD-GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVH-----VTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred ecC-CeEEEccCCcCcEEEeccccHHHHHHHhhccCcee-----EEEecccCCeEEEecCCCceEEEEEcCC
Confidence 556 8888877 57889999955411 11110 11211 0122223555555555666677776653
No 124
>PF07861 WND: WisP family N-Terminal Region; InterPro: IPR012503 This family is found at the N terminus of the Tropheryma whipplei WisP family proteins [].
Probab=23.71 E-value=1.5e+02 Score=23.23 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=27.1
Q ss_pred CCCCCCCceEeeccCcEEEEeeecCCeeEEEEcCCCcccc
Q 036099 87 LPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPLTKQCV 126 (279)
Q Consensus 87 ~p~~~~~~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~ 126 (279)
+|....+..-+.-.+|.+|+.. .....+..+|+||+-.
T Consensus 26 ~p~S~sr~s~VS~~~~~~C~s~--~~~~~~~vDP~Tgra~ 63 (263)
T PF07861_consen 26 LPHSTSRFSSVSFAGGRACLSD--TAGSVYTVDPLTGRAV 63 (263)
T ss_pred cccCCceeEEEecCCceEEEec--CCCceEEecccccccc
Confidence 3434456667777799988887 4457789999998644
No 125
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=23.37 E-value=2.5e+02 Score=22.98 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=33.3
Q ss_pred CcEEEEeeecCCeeEEEEcCCCcccccc--CCCCccCCCcccEEEecCCCCCceEEEE
Q 036099 101 NGLILLGSSLREHRYYVCNPLTKQCVAI--PKARERVLESAPALAFDPRDSSHYKIIR 156 (279)
Q Consensus 101 ~Glll~~~~~~~~~~~v~NP~T~~~~~l--P~~~~~~~~~~~~lg~d~~~~~~ykvv~ 156 (279)
+|.|.-.. ...++|..||.|+.-..+ .++........+++-|+|.. +.-+||.
T Consensus 38 ~G~LYgl~--~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~a-DRlRvvs 92 (236)
T PF14339_consen 38 NGQLYGLG--STGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAA-DRLRVVS 92 (236)
T ss_pred CCCEEEEe--CCCcEEEEECCCCeEEEeecccccccccCceEEEecCccc-CcEEEEc
Confidence 56554443 467899999999997766 33332223335566667876 6666664
No 126
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=23.32 E-value=4.9e+02 Score=22.52 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=59.5
Q ss_pred CcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCC--Cccc
Q 036099 101 NGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETK--TWIN 178 (279)
Q Consensus 101 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~--~W~~ 178 (279)
+|-+++... ..+++.+|+.|++..-...... . ..+.-.+. ..++.|+.... .-.+...+..++ .|..
T Consensus 111 ~G~i~~g~~--~g~~y~ld~~~G~~~W~~~~~~---~--~~~~~~~v-~~~~~v~~~s~---~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 111 DGKIYVGSW--DGKLYALDASTGTLVWSRNVGG---S--PYYASPPV-VGDGTVYVGTD---DGHLYALNADTGTLKWTY 179 (370)
T ss_pred CCeEEEecc--cceEEEEECCCCcEEEEEecCC---C--eEEecCcE-EcCcEEEEecC---CCeEEEEEccCCcEEEEE
Confidence 677666652 3378899998887554333222 0 11111222 25566666531 224445555555 5764
Q ss_pred cccCCCCCceeeeeccCeEEEeCCeEEEEec--CCeEEEEecCCCe--EE
Q 036099 179 CKLNLKPPGHILFFVMRSVYSRGGILYSITD--QGTIVCYNIEAPT--EV 224 (279)
Q Consensus 179 ~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~--~~~i~~fD~~~~~--~~ 224 (279)
.... + ........++.-+ |++|+-.. ...+.++|.++.+ |+
T Consensus 180 ~~~~--~--~~~~~~~~~~~~~-~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 180 ETPA--P--LSLSIYGSPAIAS-GTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred ecCC--c--cccccccCceeec-ceEEEecCCCcceEEEEEccCCcEeee
Confidence 4322 1 1111122344666 99999887 6789999997754 66
No 127
>PTZ00334 trans-sialidase; Provisional
Probab=23.24 E-value=7.3e+02 Score=24.46 Aligned_cols=73 Identities=11% Similarity=0.046 Sum_probs=45.4
Q ss_pred ccCeEEEeCCeEEEEe-------cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeC-CeEEEEEeCC-CeEEEEEe
Q 036099 193 VMRSVYSRGGILYSIT-------DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCK-GVLNYANRNE-SKLLIWLF 263 (279)
Q Consensus 193 ~~~~v~~~~g~ly~l~-------~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~-G~L~~~~~~~-~~~~vW~l 263 (279)
.-++|..++|+|-+-- ..-.++.|-..+..|.+---.|+ ..+..+.+.+.+ |+|.|+...+ ..-.|++-
T Consensus 262 GGSGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~--~gC~~P~I~EWe~gkLlM~t~C~dG~RrVYES 339 (780)
T PTZ00334 262 GGSGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSA--DGCSDPSVVEWKEGKLMMMTACDDGRRRVYES 339 (780)
T ss_pred CcCeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCC--CCCCCCEEEEEcCCeEEEEEEeCCCCEEEEEE
Confidence 4456666658887743 11245667666667865311343 235668888885 9998877654 54578877
Q ss_pred ccCC
Q 036099 264 DDRH 267 (279)
Q Consensus 264 ~~~~ 267 (279)
.|.+
T Consensus 340 ~DmG 343 (780)
T PTZ00334 340 GDKG 343 (780)
T ss_pred CCCC
Confidence 6655
No 128
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=22.99 E-value=58 Score=24.43 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=23.3
Q ss_pred HHHHHHhcCChhhhHHHhhhhHHHHhhh
Q 036099 10 LITEILCRLPVKSVTRFKIVSKAWNNLI 37 (279)
Q Consensus 10 ll~eIL~rLP~~~l~r~r~VcK~W~~li 37 (279)
++++-|..|.-..++||++|=|++.++-
T Consensus 111 ~VM~~Lk~lD~VAYvRFASVYr~F~dv~ 138 (156)
T COG1327 111 LVMEELKKLDEVAYVRFASVYRSFKDVD 138 (156)
T ss_pred HHHHHHHhcchhhhhhhhhHhcccCCHH
Confidence 5566788999889999999999987653
No 129
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=22.10 E-value=4.8e+02 Score=21.92 Aligned_cols=148 Identities=13% Similarity=0.110 Sum_probs=72.8
Q ss_pred CeeEEEEcCCCccccc---cCCCCccCCCcccEEEecCCCCCce--EEEEEEeccccceEEEEeCCCC-CccccccCCCC
Q 036099 112 EHRYYVCNPLTKQCVA---IPKARERVLESAPALAFDPRDSSHY--KIIRFVRARMVSEAEIFSSETK-TWINCKLNLKP 185 (279)
Q Consensus 112 ~~~~~v~NP~T~~~~~---lP~~~~~~~~~~~~lg~d~~~~~~y--kvv~~~~~~~~~~~~vy~s~~~-~W~~~~~~~~p 185 (279)
..+++++|..|.+... +|+.-.........+.+|... +.. ..+-+. +.....+-||+.+++ +||.......|
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~-~~~~~~~aYIt-D~~~~glIV~dl~~~~s~Rv~~~~~~~ 110 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRD-GNCDDGFAYIT-DSGGPGLIVYDLATGKSWRVLHNSFSP 110 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTT-TTS-SEEEEEE-ETTTCEEEEEETTTTEEEEEETCGCTT
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccC-CCCcceEEEEe-CCCcCcEEEEEccCCcEEEEecCCcce
Confidence 4689999999998433 455444344555666777643 211 112222 222558999999997 68877654322
Q ss_pred Cc--eeeeecc---------CeEEE-----eCCeEEEEe-cCCeEEEEec---CCCe----------EEEEecCCCCCCC
Q 036099 186 PG--HILFFVM---------RSVYS-----RGGILYSIT-DQGTIVCYNI---EAPT----------EVEIVEVPDENYP 235 (279)
Q Consensus 186 ~~--~~~~~~~---------~~v~~-----~~g~ly~l~-~~~~i~~fD~---~~~~----------~~~i~~~P~~~~~ 235 (279)
.. ....... .++.. ++..|||-. .+..+.+..+ .++. ++.+...+ .
T Consensus 111 ~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~----~ 186 (287)
T PF03022_consen 111 DPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG----S 186 (287)
T ss_dssp S-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-------
T ss_pred eccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccC----C
Confidence 21 1000000 11111 112456555 2334444442 1111 11111111 0
Q ss_pred CCCeeEEeeCCeEEEEEeCCCeEEEEEecc
Q 036099 236 YGRGVIELCKGVLNYANRNESKLLIWLFDD 265 (279)
Q Consensus 236 ~~~~~l~~~~G~L~~~~~~~~~~~vW~l~~ 265 (279)
...+...+.+|.|++.......|..|..+.
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 122444556899999999988888888654
No 130
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=21.78 E-value=71 Score=19.61 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=10.4
Q ss_pred CCCHHHHHHHHhc
Q 036099 5 SLSEDLITEILCR 17 (279)
Q Consensus 5 ~LP~Dll~eIL~r 17 (279)
.||||+-.|+|-.
T Consensus 10 kLPDdLKrEvldY 22 (65)
T COG5559 10 KLPDDLKREVLDY 22 (65)
T ss_pred HCcHHHHHHHHHH
Confidence 5899999998743
No 131
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.64 E-value=2.2e+02 Score=26.44 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=54.0
Q ss_pred eeEEEEcCCCccccc-cCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCCccccccCCC-CCceee
Q 036099 113 HRYYVCNPLTKQCVA-IPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLK-PPGHIL 190 (279)
Q Consensus 113 ~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~-p~~~~~ 190 (279)
..+.+|+|..++... +-.-+ +......+..-+.. +..-+++.+.. ...+..|+.+.+.|..--..+. |. +
T Consensus 804 ~giHlWDPFigr~Laq~~dap--k~~a~~~ikcl~nv-~~~iliAgcsa--eSTVKl~DaRsce~~~E~kVcna~~---P 875 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAP--KEGAGGNIKCLENV-DRHILIAGCSA--ESTVKLFDARSCEWTCELKVCNAPG---P 875 (1034)
T ss_pred CcceeecccccchhHhhhcCc--ccCCCceeEecccC-cchheeeeccc--hhhheeeecccccceeeEEeccCCC---C
Confidence 345678888776432 21111 11122222223332 34444444332 5678899999887754322221 11 1
Q ss_pred eeccCeEEEeCCeEEEEe---cCCeEEEEecCCCe
Q 036099 191 FFVMRSVYSRGGILYSIT---DQGTIVCYNIEAPT 222 (279)
Q Consensus 191 ~~~~~~v~~~~g~ly~l~---~~~~i~~fD~~~~~ 222 (279)
.....++.+. .+=.|++ ..+.|+.+|..+++
T Consensus 876 na~~R~iaVa-~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 876 NALTRAIAVA-DKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred chheeEEEec-cCcchhhHHhcCCcEEEEecCCCc
Confidence 1233556666 6666776 67999999998865
No 132
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.48 E-value=5.8e+02 Score=22.66 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=71.5
Q ss_pred eccCcEEEEeeecCCeeEEEEcCCCcc-ccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCCc
Q 036099 98 DSCNGLILLGSSLREHRYYVCNPLTKQ-CVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTW 176 (279)
Q Consensus 98 ~s~~Glll~~~~~~~~~~~v~NP~T~~-~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W 176 (279)
-|-+|-++..... ....||.-.|+. +...-|.........+-|+.|... ..+.+...... ...+..++...++|
T Consensus 194 FS~dgk~lasig~--d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~-~~l~laa~~~~--~~~v~~~~~~~w~~ 268 (398)
T KOG0771|consen 194 FSPDGKFLASIGA--DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQ-ETLRLAASQFP--GGGVRLCDISLWSG 268 (398)
T ss_pred eCCCCcEEEEecC--CceEEEEeccCchhhhcCCcccchhhhhceecccCCC-ceEEEEEecCC--CCceeEEEeeeecc
Confidence 3558877666633 367799999984 333444444456677778888865 55555554433 33455566665555
Q ss_pred cccccCCCCCceeeeeccCeEEEeCCeEEEEe-cCCeEEEEecCCCeEEEE
Q 036099 177 INCKLNLKPPGHILFFVMRSVYSRGGILYSIT-DQGTIVCYNIEAPTEVEI 226 (279)
Q Consensus 177 ~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~-~~~~i~~fD~~~~~~~~i 226 (279)
...-....+......-.+-.|.-+ |++--++ .++.|..|+..+.+-..+
T Consensus 269 ~~~l~~~~~~~~~~siSsl~VS~d-Gkf~AlGT~dGsVai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 269 SNFLRLRKKIKRFKSISSLAVSDD-GKFLALGTMDGSVAIYDAKSLQRLQY 318 (398)
T ss_pred ccccchhhhhhccCcceeEEEcCC-CcEEEEeccCCcEEEEEeceeeeeEe
Confidence 311111001001111123457778 9998888 578899999888764443
No 133
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=21.32 E-value=5.2e+02 Score=22.03 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=27.3
Q ss_pred EEEeCCC-C-CccccccCCCCCceeeeeccCeEEEeCCeEEEEecCCeEEEEecCCCeEEEEecCCC
Q 036099 167 EIFSSET-K-TWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPD 231 (279)
Q Consensus 167 ~vy~s~~-~-~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~~~~i~~~P~ 231 (279)
.+|...+ | +|........ .. .......|.++++..|..+..+.|+.=.=..++|+.+ +++.
T Consensus 38 ~il~T~DGG~tW~~~~~~~~-~~--~~~~l~~I~f~~~~g~ivG~~g~ll~T~DgG~tW~~v-~l~~ 100 (302)
T PF14870_consen 38 TILKTTDGGKTWQPVSLDLD-NP--FDYHLNSISFDGNEGWIVGEPGLLLHTTDGGKTWERV-PLSS 100 (302)
T ss_dssp EEEEESSTTSS-EE-----S--------EEEEEEEETTEEEEEEETTEEEEESSTTSS-EE-----T
T ss_pred EEEEECCCCccccccccCCC-cc--ceeeEEEEEecCCceEEEcCCceEEEecCCCCCcEEe-ecCC
Confidence 3454444 3 7987754321 11 0112244556636666566777777766678899999 7764
No 134
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=20.94 E-value=5e+02 Score=21.67 Aligned_cols=56 Identities=13% Similarity=0.323 Sum_probs=39.4
Q ss_pred ecCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCCCeEEEEEecc
Q 036099 208 TDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDD 265 (279)
Q Consensus 208 ~~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~vW~l~~ 265 (279)
..++.|-+.|+.++.+..- ..|++...- ...-+..+|....+..+..+.-||.|-.
T Consensus 143 dqsg~irvWDl~~~~c~~~-liPe~~~~i-~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHE-LIPEDDTSI-QSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred cCCCcEEEEEccCCccccc-cCCCCCcce-eeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 3789999999999999988 888863211 1222334677766666677788888754
No 135
>PF11900 DUF3420: Domain of unknown function (DUF3420); InterPro: IPR024228 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is about 50 amino acids in length.
Probab=20.78 E-value=73 Score=18.87 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=9.1
Q ss_pred CCCCHHHHHHH
Q 036099 4 ISLSEDLITEI 14 (279)
Q Consensus 4 ~~LP~Dll~eI 14 (279)
.+||.|++.+|
T Consensus 9 K~LP~eVv~kI 19 (49)
T PF11900_consen 9 KELPPEVVKKI 19 (49)
T ss_pred ccCCHHHHHHH
Confidence 47899998887
No 136
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=20.43 E-value=3.7e+02 Score=25.11 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=35.4
Q ss_pred ccCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCC
Q 036099 99 SCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSE 172 (279)
Q Consensus 99 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~ 172 (279)
..+|-+|+.. .+..+++||||...+... .....+....+..-|-|.+ ++-.|+.... ...+.+|+..
T Consensus 59 n~dG~lL~SG-SDD~r~ivWd~~~~Kllh--sI~TgHtaNIFsvKFvP~t-nnriv~sgAg---Dk~i~lfdl~ 125 (758)
T KOG1310|consen 59 NADGELLASG-SDDTRLIVWDPFEYKLLH--SISTGHTANIFSVKFVPYT-NNRIVLSGAG---DKLIKLFDLD 125 (758)
T ss_pred cCCCCEEeec-CCcceEEeecchhcceee--eeecccccceeEEeeeccC-CCeEEEeccC---cceEEEEecc
Confidence 3477777776 457889999999555433 2222222333333455544 3333333222 4456666655
No 137
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=20.21 E-value=3.7e+02 Score=19.89 Aligned_cols=101 Identities=10% Similarity=0.083 Sum_probs=49.8
Q ss_pred CCeeEEEEcCCCcccccc-CCC-----CccCCCcccEEE-ecCCCCCceEEEEEEeccccceEEEEeCCCCC---ccccc
Q 036099 111 REHRYYVCNPLTKQCVAI-PKA-----RERVLESAPALA-FDPRDSSHYKIIRFVRARMVSEAEIFSSETKT---WINCK 180 (279)
Q Consensus 111 ~~~~~~v~NP~T~~~~~l-P~~-----~~~~~~~~~~lg-~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~---W~~~~ 180 (279)
...+++|.||..+.-+.- ... ..........-| +++ +..+-++.+.. ...+-+|+.+.++ +++++
T Consensus 18 ~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~--~~~~D~LliGt---~t~llaYDV~~N~d~Fyke~~ 92 (136)
T PF14781_consen 18 TGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKP--DDGRDCLLIGT---QTSLLAYDVENNSDLFYKEVP 92 (136)
T ss_pred cCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCC--CCCcCEEEEec---cceEEEEEcccCchhhhhhCc
Confidence 456788888876643332 111 111122222222 233 24566666655 6688899988875 55554
Q ss_pred cCCCCCceeeeeccCeEEEeCCeEEEEecCCeEEEEecCCCe
Q 036099 181 LNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPT 222 (279)
Q Consensus 181 ~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~ 222 (279)
..-. ........ ... ..+-..+..+.|..||-+.++
T Consensus 93 DGvn---~i~~g~~~--~~~-~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 93 DGVN---AIVIGKLG--DIP-SPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred ccee---EEEEEecC--CCC-CcEEEECceEEEEEeCCCCcE
Confidence 3210 00000000 011 333333456888889977765
No 138
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=20.03 E-value=3e+02 Score=22.62 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=29.7
Q ss_pred EEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCC---CeEEEEE
Q 036099 214 VCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNE---SKLLIWL 262 (279)
Q Consensus 214 ~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~---~~~~vW~ 262 (279)
+.||+.+++++.+ .++-+..-.....+ .+|+|..++... ..+++..
T Consensus 49 ~~yD~~tn~~rpl-~v~td~FCSgg~~L--~dG~ll~tGG~~~G~~~ir~~~ 97 (243)
T PF07250_consen 49 VEYDPNTNTFRPL-TVQTDTFCSGGAFL--PDGRLLQTGGDNDGNKAIRIFT 97 (243)
T ss_pred EEEecCCCcEEec-cCCCCCcccCcCCC--CCCCEEEeCCCCccccceEEEe
Confidence 5799999999999 87754322222323 378888887653 4455444
Done!