Query 036104
Match_columns 758
No_of_seqs 203 out of 340
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 09:29:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2073 SAP family cell cycle 100.0 5E-112 1E-116 980.4 38.3 707 1-758 1-834 (838)
2 PF04499 SAPS: SIT4 phosphatas 100.0 1.1E-54 2.5E-59 484.3 20.7 203 129-338 1-219 (475)
3 KOG2073 SAP family cell cycle 96.8 0.41 8.8E-06 58.6 26.4 93 43-140 180-278 (838)
4 PF04499 SAPS: SIT4 phosphatas 91.4 1.6 3.4E-05 50.7 11.5 129 87-223 6-149 (475)
5 PF00514 Arm: Armadillo/beta-c 74.2 9.7 0.00021 28.9 5.4 37 185-222 5-41 (41)
6 PF10508 Proteasom_PSMB: Prote 72.3 75 0.0016 37.2 14.5 136 97-248 114-255 (503)
7 PF10508 Proteasom_PSMB: Prote 69.2 48 0.001 38.7 12.0 126 107-245 43-169 (503)
8 KOG0946 ER-Golgi vesicle-tethe 69.2 30 0.00065 42.7 10.4 131 92-271 112-245 (970)
9 PF05804 KAP: Kinesin-associat 58.5 1.8E+02 0.0039 35.9 14.5 133 90-223 455-608 (708)
10 PF05804 KAP: Kinesin-associat 57.3 1.6E+02 0.0035 36.3 13.8 95 150-246 491-586 (708)
11 PF13929 mRNA_stabil: mRNA sta 57.1 66 0.0014 35.6 9.5 53 123-176 117-179 (292)
12 cd00020 ARM Armadillo/beta-cat 53.0 26 0.00057 30.7 4.9 60 186-247 43-102 (120)
13 KOG2274 Predicted importin 9 [ 46.3 1.7E+02 0.0037 37.1 11.5 85 191-275 612-726 (1005)
14 KOG2171 Karyopherin (importin) 44.4 74 0.0016 40.7 8.3 188 54-267 80-278 (1075)
15 smart00185 ARM Armadillo/beta- 37.5 55 0.0012 23.8 3.8 35 186-221 6-40 (41)
16 KOG2085 Serine/threonine prote 36.4 1.3E+02 0.0028 35.1 8.0 50 162-220 151-200 (457)
17 PF00790 VHS: VHS domain; Int 36.1 1.2E+02 0.0025 29.4 6.7 56 193-249 43-98 (140)
18 KOG1566 Conserved protein Mo25 35.9 4.8E+02 0.01 29.6 12.0 195 13-222 127-335 (342)
19 cd00020 ARM Armadillo/beta-cat 35.5 3E+02 0.0065 23.9 9.9 110 103-221 8-119 (120)
20 cd03561 VHS VHS domain family; 35.0 1.4E+02 0.0031 28.6 7.1 55 193-248 38-92 (133)
21 PF11841 DUF3361: Domain of un 33.7 1.9E+02 0.0042 29.4 8.0 121 104-236 13-149 (160)
22 KOG1222 Kinesin associated pro 31.7 4E+02 0.0086 32.0 11.0 200 31-271 255-460 (791)
23 PF03224 V-ATPase_H_N: V-ATPas 29.6 7.6E+02 0.016 26.8 13.6 190 44-271 62-273 (312)
24 KOG1062 Vesicle coat complex A 28.3 1.1E+03 0.023 30.1 14.1 198 33-246 201-432 (866)
25 smart00288 VHS Domain present 27.9 1.9E+02 0.0042 27.8 6.8 54 193-247 38-91 (133)
26 PF08569 Mo25: Mo25-like; Int 27.6 8.6E+02 0.019 27.4 12.6 127 90-224 153-285 (335)
27 PF06025 DUF913: Domain of Unk 26.1 5E+02 0.011 29.6 10.6 130 93-225 97-235 (379)
28 PF08444 Gly_acyl_tr_C: Aralky 25.7 86 0.0019 29.0 3.6 41 348-388 31-86 (89)
29 PTZ00429 beta-adaptin; Provisi 25.2 6.7E+02 0.015 31.4 12.1 74 153-227 127-213 (746)
30 PF13646 HEAT_2: HEAT repeats; 24.8 3.3E+02 0.0072 22.9 7.0 60 155-216 24-86 (88)
31 KOG0212 Uncharacterized conser 24.8 6.1E+02 0.013 31.0 11.0 89 158-249 332-462 (675)
32 PF04858 TH1: TH1 protein; In 23.9 1.4E+03 0.03 27.9 14.5 178 13-205 289-503 (584)
33 PF05924 SAMP: SAMP Motif; In 23.7 48 0.001 22.9 1.2 11 30-40 1-11 (20)
34 PF04802 SMK-1: Component of I 22.5 1.8E+02 0.004 30.2 5.8 60 189-248 2-64 (193)
35 PF08569 Mo25: Mo25-like; Int 22.4 6.8E+02 0.015 28.2 10.6 88 124-220 95-191 (335)
36 KOG0946 ER-Golgi vesicle-tethe 22.2 1.3E+03 0.027 29.6 13.2 205 48-270 117-349 (970)
37 KOG2274 Predicted importin 9 [ 21.9 1E+03 0.022 30.6 12.6 77 193-269 660-740 (1005)
38 TIGR00207 fliG flagellar motor 21.9 5.6E+02 0.012 28.7 9.8 115 127-247 121-240 (338)
39 PF12726 SEN1_N: SEN1 N termin 21.7 1.3E+03 0.029 28.3 13.7 91 124-223 233-326 (727)
40 cd03565 VHS_Tom1 VHS domain fa 21.6 2.6E+02 0.0057 27.4 6.4 55 192-246 38-93 (141)
41 PLN03200 cellulose synthase-in 21.2 8.9E+02 0.019 34.0 12.8 37 186-222 225-261 (2102)
42 PF04802 SMK-1: Component of I 20.8 4.5E+02 0.0098 27.4 8.2 42 180-221 132-175 (193)
43 cd00256 VATPase_H VATPase_H, r 20.7 1.4E+03 0.03 26.8 15.2 133 126-269 165-309 (429)
44 PF09440 eIF3_N: eIF3 subunit 20.3 1.3E+02 0.0027 29.7 3.9 39 24-62 87-130 (133)
45 cd03568 VHS_STAM VHS domain fa 20.1 3.5E+02 0.0076 26.7 7.0 55 192-247 37-91 (144)
No 1
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.5e-112 Score=980.38 Aligned_cols=707 Identities=35% Similarity=0.526 Sum_probs=605.6
Q ss_pred CCcCCCCCCCCChhhhhhcCCCCCHHHHhCChhHHHHHHhcchhHHHHhcCHHHHHHHHhhhccCCCCChHHhhhccccc
Q 036104 1 MFWKLTALSASSPVESVLDKENFTLEELLDEEEIIQECKALNSRLINFLRDREQVEKLLRYIVEEAPADAESKQAFKFPF 80 (758)
Q Consensus 1 MFWkf~g~~ssS~IDsLLdked~TLEeLLDEdDLLQE~KaqN~KLIdFL~kpevLekLI~YI~~eppEd~e~k~~~Kyp~ 80 (758)
|||+|+ ....+.++.+|+++.+||++||||++++||||++|.||++||++|+++.+|+.||++++++++++|++||||+
T Consensus 1 ~f~~~~-~~~~~~~e~~l~~~~~~l~elldeed~~~e~~~~n~~l~~~l~~~e~~~~l~~~I~~e~~~d~D~k~~f~~p~ 79 (838)
T KOG2073|consen 1 MFWDFD-LESSAEIELLLEKESDTLDELLDEEDILQECKLQNSKLLNFLKRPEVLEKLVEYIIEEPEEDADKKTRFKYPN 79 (838)
T ss_pred Cccccc-cchhHHHHHhcccchhHHHHhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhcCCCcccchhhhhcccc
Confidence 999998 7789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceehhcccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCC
Q 036104 81 VACEIFTCEIDVILKTLVEEEELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGI 160 (758)
Q Consensus 81 IAsEILSsdi~~I~d~Lvene~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdi 160 (758)
|+||||||++|.|.++|++|+.+|.+||+||+++.|+|+++++||+||+..|+.||+.+++.||++++++|+.|++||++
T Consensus 80 i~~Eilt~dv~~I~~~l~~de~ll~~l~s~l~~~~pln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~hi~~ 159 (838)
T KOG2073|consen 80 ISCEILTSDVWPISEALVEDESLLSLLYSILEHEPPLNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLKHIDI 159 (838)
T ss_pred HHHHHHhcCcHHHHHHHhccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhc-----CChHHHHHhcCh
Q 036104 161 TSIMEVLVRLVGADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRN-----APSALATKLASP 235 (758)
Q Consensus 161 saImDLLLrLIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn-----~Pn~L~r~L~S~ 235 (758)
++|||||+|+++||++.+|. ++|++||+++++|+||+++|+|++++++|+||+++||+|+|. |||+|+++|+||
T Consensus 160 stlMD~Llkli~~de~~~p~-~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~ 238 (838)
T KOG2073|consen 160 STLMDFLLKLISTDEPESPR-TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESP 238 (838)
T ss_pred cHHHHHHHHhccccCCCCch-HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCH
Confidence 99999999999999999885 999999999999999999999999999999999999999988 999999999999
Q ss_pred hHHHHHHHHHhcCCCCcccchhhhhhhhhccCCCccccccchhhhhcccCCCCCCCCCChhHHHHHHHHHHHHHHHhcCC
Q 036104 236 SFVARIFGHALEDSRSKSSLVHSLSVCISLLDPKRSAIASPLMYSFRSQHMYESPNPVNPETIGAMLPKLCDLLMLLNVS 315 (758)
Q Consensus 236 e~I~~Ll~~mL~~~~s~SsLVngIsILIeLLrknnsd~d~~~~~~~~~q~~~~~P~~~dPiyLg~mL~~f~df~~LL~~~ 315 (758)
++|+|||++||++++++|++|++|+|||+|+.++|.....+.++.+..|...+.+..+.+..|++|.|||++|++||+++
T Consensus 239 e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~dF~~lL~~~ 318 (838)
T KOG2073|consen 239 ETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSERDPIVLNELLGAMEPRLGDFVQLLLEP 318 (838)
T ss_pred HHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCccccCccchHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999888766553233444443333333445556899999999999999999
Q ss_pred CCCccccccccccCCCCcccccc------------------------------------------c-----------c--
Q 036104 316 SDEKFLETTYGELRPPLGKHRLK------------------------------------------P-----------T-- 340 (758)
Q Consensus 316 ~~~~~L~TT~G~l~pPLG~~RLK------------------------------------------~-----------~-- 340 (758)
+..+.|.||||+++||||++||| | .
T Consensus 319 ~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~~ 398 (838)
T KOG2073|consen 319 EKLDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSDE 398 (838)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999 0 0
Q ss_pred -------c--------------------------------------cCCCCCCCCcchHhHHHHHH-HHHHHhc---CCc
Q 036104 341 -------L--------------------------------------PASGKRAPRAGNLGHITRIS-NKLVQLG---STN 371 (758)
Q Consensus 341 -------~--------------------------------------~a~~k~~~R~GyMGHLTrIA-N~Ivq~~---~~~ 371 (758)
. .+.++...|.|||||+||+| |+++|.. ++.
T Consensus 399 ~~~~~~~s~~~~~v~~~l~~c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~~~g~~~h~~R~~pn~~vq~~~~~~~~ 478 (838)
T KOG2073|consen 399 TNNDSNISADNEIVDHLLQDCQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEYRNGPIGHLTRIAPNVGDQLKIKLEDT 478 (838)
T ss_pred ccccccCCCchHHHHHHHHHhhhhhhhhhcccccchhccccccchhhhhcCCcccCCccceeeecCcchhhhccccccch
Confidence 0 01222224999999999999 9999984 488
Q ss_pred HHHHHHHh--hccchhHHHHhhcc------cccccchhccccCC-CCCccCCCCCCCCcccccCCCccHHHHhhhhhhh-
Q 036104 372 SRIHACLQ--ENTEWSEWQVNVLQ------ERNAVENVYRWACG-RPTALQDRTKDSDDDDLHDRDYDVAALANNLSQA- 441 (758)
Q Consensus 372 ~~Iq~~Lq--en~~W~~Fv~~~L~------erN~VEnV~~w~cG-rpt~~~~~~~dsDddd~~d~d~~~~~~~~~l~qa- 441 (758)
..|++.|+ .+..|++|...++. .||+|+|+|.|.|| +|++.+++.+..|+++++||||++.+.++++.|+
T Consensus 479 ~~i~~~L~~f~~~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~~~~~~id~~~~~~e~~~~d~~~~~~~~~~~i~~~~ 558 (838)
T KOG2073|consen 479 NIISTLLEGFPEEPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGYLTSNFIDLTRFNDEEEKADRDYDVMGHLDNIADHN 558 (838)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCccchhhhhhhhhccHHHHhhhccccchhhccccccchhhhhHhhhhh
Confidence 99999999 46799999999998 79999999999999 6999999999999999999999999999999998
Q ss_pred hcceeecCCChhhhccCCCcchhHHHHHHhhhccCCCcccccCcccceeeec---ccccCCcCC-Cccc-CCCccccccc
Q 036104 442 FRYKIYGNEDAEEDHGALDRDDEVLILVFTFIAINDKDVYFDDESAEVVISS---LRLGDDQGS-SLFT-NSNWFAFQDD 516 (758)
Q Consensus 442 f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~-~~~~~~~~~~ 516 (758)
|+|.++.+..+.+..+..+| + ..|||||+++||+++ +||||+|.+ ++++ |++||+|||+
T Consensus 559 F~~~~de~~~~~e~~~~~~~--~--------------~q~~~dE~~~~~l~~~~~~~lgd~~~~~~~~~~~~~~~~~~d~ 622 (838)
T KOG2073|consen 559 FSINIDENSPNAEDLEVEDR--L--------------IQYFDDEKAETVLGAMGQLRLGDEDSEDSLKTWNGEELAGQDD 622 (838)
T ss_pred ccccccccCchhhhhhhhcc--c--------------cccccccchheeecccccccccchhhhhhhhcccccccccccc
Confidence 99999999999999999988 7 789999999999999 999999988 7998 9999999999
Q ss_pred ccCCCCCCCCCccccccccccCC-CCCCCCCCCCceEeccccccccccCCCCCCCCCcccccCCCCCCcccCCCCCCccc
Q 036104 517 RIGNAPVSTSPSEMMDEVNLNGT-ANGGNSSSDDEVVVGEDDELTESKDSVNGTSTSDANYLNTLPGSASLNTGDLNSQY 595 (758)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (758)
+..+.++.+.....+.++..+.+ ++.+..++++..++|+-.+...+.++-..-..... -....++...+. .+
T Consensus 623 ~~~~~~~~~~~~~~~~D~e~~~t~n~~~~~~d~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~----p~-- 695 (838)
T KOG2073|consen 623 KFDINDSEQDSYSGFFDVEEWETYNADEDNDDDTSSVIGEGGESPTGEPSWGEDSDENG-SADSTDGTDEFT----PD-- 695 (838)
T ss_pred ccCCCcccccccccccccccccCCCCccccccchhhhhhhcCCCCCCccccccCCCCCc-ccccCCCccccC----CC--
Confidence 98888876654445566666665 55556666678888885533332222221111110 001111111111 11
Q ss_pred ccCCCCCCCccccCCCCCCcCCCCCCCCcccCCCCCCCCCCCCccccCCCCCCCCccccCCCCCCCCcCCCCCCccCCCC
Q 036104 596 LFAGRPLPDWEGWGGSSDMQVSGSSLNPFIDHDISDVNPASHNEAVTSDGSSPSSVESTLPNGSSTSMDSSDGTVSTDGS 675 (758)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (758)
...++.-|.|+.|.+++....++++ .| +-++ ++.....|+++++..++.+. ...
T Consensus 696 ~~~~~~~p~p~~~~~~~~~v~~~~~-~~-------------------~~d~---~s~~~~~n~~~~~~~~s~~~---~~~ 749 (838)
T KOG2073|consen 696 HPETENSPSPSKPPGSAEGVSPKAS-EP-------------------NGDV---SSLGEQDNELTDSDEQSEGD---ETI 749 (838)
T ss_pred CCcccCCCCCCCCccchhccCCccc-cc-------------------cccc---ccccccCCCCCccccccccc---cCC
Confidence 2333456799999888877666554 23 2222 44555677777777666665 556
Q ss_pred CCCCCCCccccccceEEeecc--hhhHHHHHHHHHhcccccCCCCccccccCCCCCCCCCCccccccccccCCceeeccc
Q 036104 676 QRCASVPSLFEEDVEFVGVEL--EGTERAMEQALKEGIVGEAGPLKRNIITKGPEKENPDESGAAIKEFNDANYWRVDQE 753 (758)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (758)
|..+++++++++++||+||++ ++++++|.|+.|||+++++++++||.....+.+..++..+.-+..+||++||.+++|
T Consensus 750 p~~~a~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 829 (838)
T KOG2073|consen 750 PKRPAVPDLTGKDTENAVVRSTAPDSELSDDQDPKEGMWAEPSSAPRNSDETAPSSSGPDSPSSDFTSANDTSYWPVPHE 829 (838)
T ss_pred CCCccccccccccccccccccCCCcccccccCCCcCCcccCccCCCCcccccCccccCCCCCCCccCcccccCCCCCccc
Confidence 666699999999999999999 999999999999999999999999998899999998888888999999999999999
Q ss_pred ccccC
Q 036104 754 VAVLE 758 (758)
Q Consensus 754 ~~~~~ 758 (758)
+++.|
T Consensus 830 ~~~~~ 834 (838)
T KOG2073|consen 830 ITTEE 834 (838)
T ss_pred ccccc
Confidence 98864
No 2
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=100.00 E-value=1.1e-54 Score=484.29 Aligned_cols=203 Identities=32% Similarity=0.520 Sum_probs=186.5
Q ss_pred HHHHHhcCchhHHHHHHhCccHHHHHHHhhCChHHHHHHHHHhccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHH
Q 036104 129 VVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGITSIMEVLVRLVGADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPE 208 (758)
Q Consensus 129 v~~LL~rkt~eml~FIk~~~~iVd~LLkHIdisaImDLLLrLIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~d 208 (758)
+++||.||+.+|++||+++|++|++|++||++|+|||||+|||++|+++. ++++++||++|+||++||++|+|+++++
T Consensus 1 n~~Ll~~k~~e~l~Fik~~~~~v~~llkHI~~~~ImDlLLklIs~d~~~~--~~~ilewL~~q~LI~~Li~~L~p~~~~~ 78 (475)
T PF04499_consen 1 NECLLDRKTEEMLEFIKSQPNFVDNLLKHIDTPAIMDLLLKLISTDKPES--PTGILEWLAEQNLIPRLIDLLSPSYSSD 78 (475)
T ss_pred CchhhhcCHHHHHHHHHhCccHHHHHHHhcCCcHHHHHHHHHHccCcccc--hHHHHHHHHHhCHHHHHHHHhCCCCCHH
Confidence 46899999999999999999999999999999999999999999999754 5899999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhc------------CChHHHHHhcChhHHHHHHHHHhcCCCCcccchhhhhhhhhccCCCccccccc
Q 036104 209 VHANAAETLCAITRN------------APSALATKLASPSFVARIFGHALEDSRSKSSLVHSLSVCISLLDPKRSAIASP 276 (758)
Q Consensus 209 ih~NAae~LkaIsrn------------~Pn~L~r~L~S~e~I~~Ll~~mL~~~~s~SsLVngIsILIeLLrknnsd~d~~ 276 (758)
+|+|||++||+|++. +||+|+|+|+|+++|++|+++||++.. +|+++|||+|||+||||++++|+.+
T Consensus 79 ~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~-~s~lvn~v~IlieLIRknnsdy~~~ 157 (475)
T PF04499_consen 79 VQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG-GSSLVNGVSILIELIRKNNSDYDEQ 157 (475)
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHhcccccchh
Confidence 999999999998652 689999999999999999999998543 8999999999999999999999863
Q ss_pred hhhhhcccCCCCCCCCCChhHHHHHHH----HHHHHHHHhcCCCCCccccccccccCCCCcccccc
Q 036104 277 LMYSFRSQHMYESPNPVNPETIGAMLP----KLCDLLMLLNVSSDEKFLETTYGELRPPLGKHRLK 338 (758)
Q Consensus 277 ~~~~~~~q~~~~~P~~~dPiyLg~mL~----~f~df~~LL~~~~~~~~L~TT~G~l~pPLG~~RLK 338 (758)
.......++|.+++|+||+.|++ ++++|++||..++..+.+.||+|.+.|||||+|||
T Consensus 158 ----~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~G~l~~PLG~~Rlk 219 (475)
T PF04499_consen 158 ----LYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTFGVLIPPLGFERLK 219 (475)
T ss_pred ----hccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCCCCCCCCcchHHHH
Confidence 12334457889999999998885 66799999999999999999999999999999999
No 3
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=0.41 Score=58.65 Aligned_cols=93 Identities=25% Similarity=0.328 Sum_probs=51.7
Q ss_pred hhHHHHhcCHHHHHHHHhhhccCCCCChHHhhhcccccceehhccc-----chHHHHHHhhcCHHHHHHHHh-hcCCCCC
Q 036104 43 SRLINFLRDREQVEKLLRYIVEEAPADAESKQAFKFPFVACEIFTC-----EIDVILKTLVEEEELMNLLFS-FLEPNRP 116 (758)
Q Consensus 43 ~KLIdFL~kpevLekLI~YI~~eppEd~e~k~~~Kyp~IAsEILSs-----di~~I~d~Lvene~LL~kL~S-FLd~~~p 116 (758)
.-+|+||..++.+.+|++.+--.-..+... +=....|+|.+. .-..+..+|. .++.+.+|+. +|+...+
T Consensus 180 ~~Viq~l~d~~li~kll~ll~ps~~~~~qs----na~~~L~~iv~~s~~~~gPn~L~~qL~-s~e~ieqLl~~ml~~~~s 254 (838)
T KOG2073|consen 180 TDVIQWLNDQELIPKLLELLNPSKDPDVQS----NAGQTLCAIVRLSRNQPGPNPLTKQLE-SPETIEQLLKIMLEDGTS 254 (838)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccccchhH----HHHHHHHHHHhcccccCCCCHHHHhhc-CHHHHHHHHHHHccCCcc
Confidence 344444444556666666664433222211 112223333333 3444666665 4555566655 7788889
Q ss_pred CChhhhhhHHHHHHHHHhcCchhH
Q 036104 117 HSALLAGYFSKVVVCLMLRKTVPL 140 (758)
Q Consensus 117 lNplLAgYFsKIv~~LL~rkt~em 140 (758)
++.+++|++..|-...-.|-+.+.
T Consensus 255 ~s~lVs~i~vlI~ll~~~r~~~~~ 278 (838)
T KOG2073|consen 255 LSVLVSGIIVLISLLNPRRDTVET 278 (838)
T ss_pred hhhHHHHHHHHHHhcCcccccccc
Confidence 999999888877666655655554
No 4
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=91.42 E-value=1.6 Score=50.72 Aligned_cols=129 Identities=10% Similarity=0.211 Sum_probs=96.7
Q ss_pred ccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhc--CchhHHHHHHhCccHHHHHHHhhC-----
Q 036104 87 TCEIDVILKTLVEEEELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLR--KTVPLMNYVQIHPDVFRRLVDLIG----- 159 (758)
Q Consensus 87 Ssdi~~I~d~Lvene~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~r--kt~eml~FIk~~~~iVd~LLkHId----- 159 (758)
.-....+.+.|-+.+.++++|+.-++. |.++-+|.|++. +.+ .+..++++|.. ++++.+|++.+.
T Consensus 6 ~~k~~e~l~Fik~~~~~v~~llkHI~~-----~~ImDlLLklIs--~d~~~~~~~ilewL~~-q~LI~~Li~~L~p~~~~ 77 (475)
T PF04499_consen 6 DRKTEEMLEFIKSQPNFVDNLLKHIDT-----PAIMDLLLKLIS--TDKPESPTGILEWLAE-QNLIPRLIDLLSPSYSS 77 (475)
T ss_pred hcCHHHHHHHHHhCccHHHHHHHhcCC-----cHHHHHHHHHHc--cCcccchHHHHHHHHH-hCHHHHHHHHhCCCCCH
Confidence 344556777888888999999988873 567888999988 454 45688999988 699999999997
Q ss_pred --ChHHHHHHHHHhccCCC------CCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhc
Q 036104 160 --ITSIMEVLVRLVGADDH------AYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRN 223 (758)
Q Consensus 160 --isaImDLLLrLIs~De~------~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn 223 (758)
...+.|+|.-||+.-.. .......+..-|.++..|.+|++.+=.........|+..++.+++|.
T Consensus 78 ~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 78 DVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRK 149 (475)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 34789999999986432 11123567888999999999999755422255667777888998874
No 5
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=74.21 E-value=9.7 Score=28.91 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=32.5
Q ss_pred HHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHh
Q 036104 185 MQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITR 222 (758)
Q Consensus 185 ieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsr 222 (758)
.+.+.+.+.|+.|+++|+ +.+.+++.+|+-.|..|++
T Consensus 5 ~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhC
Confidence 456678999999999999 8889999999999988864
No 6
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=72.35 E-value=75 Score=37.17 Aligned_cols=136 Identities=17% Similarity=0.219 Sum_probs=92.6
Q ss_pred hhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCC------hHHHHHHHHH
Q 036104 97 LVEEEELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGI------TSIMEVLVRL 170 (758)
Q Consensus 97 Lvene~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdi------saImDLLLrL 170 (758)
++.+.+++..+..-|..+. .-.|..=+|++..|...+.. ++-|-. ++++..|.+.+.. ..+.+++.++
T Consensus 114 ~~~~~~l~~~i~~~L~~~d---~~Va~~A~~~L~~l~~~~~~--~~~l~~-~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDPD---LSVAKAAIKALKKLASHPEG--LEQLFD-SNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred HhcCccHHHHHHHHHcCCc---HHHHHHHHHHHHHHhCCchh--HHHHhC-cchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 3445566666777665443 45566667888888765432 233322 2223344333333 2466777777
Q ss_pred hccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHhcC
Q 036104 171 VGADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHALED 248 (758)
Q Consensus 171 Is~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~~ 248 (758)
-... ....+...+.++++.|++.|.. .|.-++.||.++|.+++. .+.-+.+|.....+++|.+.+...
T Consensus 188 ~~~S-------~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~--~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 188 ASHS-------PEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE--TPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HhcC-------HHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc--ChhHHHHHHhCCHHHHHHHHHhcc
Confidence 5433 3567888889999999999998 888899999999999987 344578888899999998887764
No 7
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=69.21 E-value=48 Score=38.74 Aligned_cols=126 Identities=14% Similarity=0.166 Sum_probs=83.6
Q ss_pred HHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCChHHHHHHHHHhc-cCCCCCCChhhHH
Q 036104 107 LFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGITSIMEVLVRLVG-ADDHAYPNFMDVM 185 (758)
Q Consensus 107 L~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdisaImDLLLrLIs-~De~~~p~~~~Ii 185 (758)
||+.|.... .-...+-++|+..++......-+ +.+...++...|.| ..+.|-.+.++.|. +.+. ..+..
T Consensus 43 lf~~L~~~~---~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~----~~~~~ 112 (503)
T PF10508_consen 43 LFDCLNTSN---REQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARH----SEGAA 112 (503)
T ss_pred HHHHHhhcC---hHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC----CHHHH
Confidence 777777553 33334557888888886654333 56666778888888 55788888666543 2222 24678
Q ss_pred HHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHH
Q 036104 186 QWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHA 245 (758)
Q Consensus 186 eWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~m 245 (758)
+++.+.++++.++..|. ..+..+...|+.+|+.|++..+ -...|..+..+.+|-+.|
T Consensus 113 ~~~~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~ 169 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLR-DPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLM 169 (503)
T ss_pred HHhcCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHH
Confidence 99999999999999994 5566788999999999987521 223344444444444444
No 8
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.17 E-value=30 Score=42.73 Aligned_cols=131 Identities=20% Similarity=0.272 Sum_probs=79.1
Q ss_pred HHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCChHHHHHHHHHh
Q 036104 92 VILKTLVEEEELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGITSIMEVLVRLV 171 (758)
Q Consensus 92 ~I~d~Lvene~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdisaImDLLLrLI 171 (758)
.|.+.++.+++....|.++|+... . ..--|=.+.+.+||..|+.++=.-|...|-= ++.+||+|---
T Consensus 112 ~iae~fik~qd~I~lll~~~e~~D-F--~VR~~aIqLlsalls~r~~e~q~~ll~~P~g---------IS~lmdlL~Ds- 178 (970)
T KOG0946|consen 112 WIAEQFIKNQDNITLLLQSLEEFD-F--HVRLYAIQLLSALLSCRPTELQDALLVSPMG---------ISKLMDLLRDS- 178 (970)
T ss_pred HHHHHHHcCchhHHHHHHHHHhhc-h--hhhhHHHHHHHHHHhcCCHHHHHHHHHCchh---------HHHHHHHHhhh-
Confidence 489999999999999999998654 1 1223557889999999998877666666643 34444443211
Q ss_pred ccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHh-cChhHHHHHHHHHhcCCC
Q 036104 172 GADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKL-ASPSFVARIFGHALEDSR 250 (758)
Q Consensus 172 s~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L-~S~e~I~~Ll~~mL~~~~ 250 (758)
..+ |..-|--+||++++-.+ =..+| +=+...++||++|=+.+.
T Consensus 179 ---------------------------------rE~-IRNe~iLlL~eL~k~n~--~IQKlVAFENaFerLfsIIeeEGg 222 (970)
T KOG0946|consen 179 ---------------------------------REP-IRNEAILLLSELVKDNS--SIQKLVAFENAFERLFSIIEEEGG 222 (970)
T ss_pred ---------------------------------hhh-hchhHHHHHHHHHccCc--hHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111 11112234556555322 12222 234556777777766554
Q ss_pred Ccccch--hhhhhhhhccCCCcc
Q 036104 251 SKSSLV--HSLSVCISLLDPKRS 271 (758)
Q Consensus 251 s~SsLV--ngIsILIeLLrknns 271 (758)
...+|| -|+.++..||+.|.|
T Consensus 223 ~dGgIVveDCL~ll~NLLK~N~S 245 (970)
T KOG0946|consen 223 LDGGIVVEDCLILLNNLLKNNIS 245 (970)
T ss_pred CCCcchHHHHHHHHHHHHhhCcc
Confidence 444443 367777788877655
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=58.50 E-value=1.8e+02 Score=35.95 Aligned_cols=133 Identities=12% Similarity=0.154 Sum_probs=72.9
Q ss_pred hHHHHHHhhcC--HHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhH-----------------HHHHHhCccH
Q 036104 90 IDVILKTLVEE--EELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPL-----------------MNYVQIHPDV 150 (758)
Q Consensus 90 i~~I~d~Lven--e~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~em-----------------l~FIk~~~~i 150 (758)
...+.+..++. +-+|..+..+=.++.+.-.....|...++..+...+.+++ |..+-++-++
T Consensus 455 L~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~l 534 (708)
T PF05804_consen 455 LQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNL 534 (708)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCH
Confidence 55666665553 3455666666566655555556666665555433333221 2222233467
Q ss_pred HHHHHHhhCChHH-HHHHHHHhccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCC-CHHHHHhHHHHHHHHHhc
Q 036104 151 FRRLVDLIGITSI-MEVLVRLVGADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLC-PPEVHANAAETLCAITRN 223 (758)
Q Consensus 151 Vd~LLkHIdisaI-mDLLLrLIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~-s~dih~NAae~LkaIsrn 223 (758)
+..+.+++...+- -|+++-.+.+--.. .....-..+|.+.++|+.|+++|+.++ +.++..-+..++-.+.+.
T Consensus 535 lp~L~~~L~~g~~~dDl~LE~Vi~~gtl-a~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 535 LPWLKDLLKPGASEDDLLLEVVILLGTL-ASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH 608 (708)
T ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHHH-HCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC
Confidence 7777777753321 23544443221100 001245679999999999999998654 556655555555555543
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=57.27 E-value=1.6e+02 Score=36.34 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=52.7
Q ss_pred HHHHHHHhhCChHHHHHHHHHhccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCC-CHHHHHhHHHHHHHHHhcCChHH
Q 036104 150 VFRRLVDLIGITSIMEVLVRLVGADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLC-PPEVHANAAETLCAITRNAPSAL 228 (758)
Q Consensus 150 iVd~LLkHIdisaImDLLLrLIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~-s~dih~NAae~LkaIsrn~Pn~L 228 (758)
+|..|++.+....--|+++-++++=-.-.....+..+.+.+.+|++-|.+.|.|.. ..+++-.+.-++-.+++ ...-
T Consensus 491 ~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~ 568 (708)
T PF05804_consen 491 FIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPEC 568 (708)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHH
Confidence 55556666655555566666666432211011355667788999999999999864 34555555433333332 1223
Q ss_pred HHHhcChhHHHHHHHHHh
Q 036104 229 ATKLASPSFVARIFGHAL 246 (758)
Q Consensus 229 ~r~L~S~e~I~~Ll~~mL 246 (758)
+..|++..+|..|+..+-
T Consensus 569 A~lL~~sgli~~Li~LL~ 586 (708)
T PF05804_consen 569 APLLAKSGLIPTLIELLN 586 (708)
T ss_pred HHHHHhCChHHHHHHHHH
Confidence 334445555555555443
No 11
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=57.10 E-value=66 Score=35.60 Aligned_cols=53 Identities=13% Similarity=0.283 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhC----------ChHHHHHHHHHhccCCC
Q 036104 123 GYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIG----------ITSIMEVLVRLVGADDH 176 (758)
Q Consensus 123 gYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHId----------isaImDLLLrLIs~De~ 176 (758)
+|+-=|..++...+...+++.++.+. +|-.+|+|++ .+.|+.+||+-+..++.
T Consensus 117 ~FL~~~i~~~~~~k~~~Y~~LVk~N~-~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~ 179 (292)
T PF13929_consen 117 SFLKLVIINLSSNKSFNYWDLVKRNK-IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDEN 179 (292)
T ss_pred HHHHHHHhccccccchHHHHHHHhhH-HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccc
Confidence 34444445555555555777777764 4556677666 46899999999988654
No 12
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=52.97 E-value=26 Score=30.71 Aligned_cols=60 Identities=15% Similarity=0.041 Sum_probs=42.0
Q ss_pred HHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHhc
Q 036104 186 QWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHALE 247 (758)
Q Consensus 186 eWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~ 247 (758)
.-+.+.+.++.|++.|.. .++.++.+|...|+.|+...+ +....+.....+..|+..+-.
T Consensus 43 ~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~l~~~l~~ 102 (120)
T cd00020 43 QAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDS 102 (120)
T ss_pred HHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcH-HHHHHHHHCCChHHHHHHHhc
Confidence 344557999999999986 478899999999999987653 333344444456666665543
No 13
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=46.28 E-value=1.7e+02 Score=37.07 Aligned_cols=85 Identities=25% Similarity=0.318 Sum_probs=56.7
Q ss_pred hhHHHHHHHhhCC---CCCHHHHHhHHHHHHHHHhcCChHHHHHhc----------------------ChhHHHHHHHH-
Q 036104 191 SNLLEMIVNKLSP---LCPPEVHANAAETLCAITRNAPSALATKLA----------------------SPSFVARIFGH- 244 (758)
Q Consensus 191 q~LI~rLI~lL~p---s~s~dih~NAae~LkaIsrn~Pn~L~r~L~----------------------S~e~I~~Ll~~- 244 (758)
..+|+.||+.|.- ...+...+-|.++|..+.|++|+||-..|. ..||.+-++..
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 4688999998874 345778888999999999998877543322 33555555554
Q ss_pred ---HhcC-CCCcccchhhhhhhhhccCCCcccccc
Q 036104 245 ---ALED-SRSKSSLVHSLSVCISLLDPKRSAIAS 275 (758)
Q Consensus 245 ---mL~~-~~s~SsLVngIsILIeLLrknnsd~d~ 275 (758)
.+.- ...++-+-....|+-.||+++.++...
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a 726 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAA 726 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHH
Confidence 2211 112333446778888999999987643
No 14
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.37 E-value=74 Score=40.69 Aligned_cols=188 Identities=19% Similarity=0.150 Sum_probs=106.3
Q ss_pred HHHHHHhhhccCCCCChHHhhhcccccceehhcccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHH
Q 036104 54 QVEKLLRYIVEEAPADAESKQAFKFPFVACEIFTCEIDVILKTLVEEEELMNLLFSFLEPNRPHSALLAGYFSKVVVCLM 133 (758)
Q Consensus 54 vLekLI~YI~~eppEd~e~k~~~Kyp~IAsEILSsdi~~I~d~Lvene~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL 133 (758)
.-..|+..+..|+. ...|-|.+.+++||.+-+++. +=++++..||+-+..+++----.| ..|+.++.
T Consensus 80 iks~lL~~~~~E~~----~~vr~k~~dviAeia~~~l~e------~WPell~~L~q~~~S~~~~~rE~a---l~il~s~~ 146 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETE----PSVRHKLADVIAEIARNDLPE------KWPELLQFLFQSTKSPNPSLRESA---LLILSSLP 146 (1075)
T ss_pred HHHHHHHHHHhccc----hHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHHhcCCCcchhHHH---HHHHHhhh
Confidence 34556666666642 234567889999998888765 557889999988876653221222 45666666
Q ss_pred hcCchhHHHHHHhCccHHHHHHHhhCChHHHHHHHHHhccCCCCCCChhhH--------HHHhhhhhHHHHHHHhhCCCC
Q 036104 134 LRKTVPLMNYVQIHPDVFRRLVDLIGITSIMEVLVRLVGADDHAYPNFMDV--------MQWLADSNLLEMIVNKLSPLC 205 (758)
Q Consensus 134 ~rkt~eml~FIk~~~~iVd~LLkHIdisaImDLLLrLIs~De~~~p~~~~I--------ieWL~eq~LI~rLI~lL~ps~ 205 (758)
...+...-.||. ++..-|.+.|..++.- +|+.+.-- ...+ -+|-.=..++|+++..+.+..
T Consensus 147 ~~~~~~~~~~~~---~l~~lf~q~~~d~s~~---vr~~a~rA-----~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i 215 (1075)
T KOG2171|consen 147 ETFGNTLQPHLD---DLLRLFSQTMTDPSSP---VRVAAVRA-----LGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVI 215 (1075)
T ss_pred hhhccccchhHH---HHHHHHHHhccCCcch---HHHHHHHH-----HHHHHHHhccchHHHHHHHHHhHHHHHHhHhhh
Confidence 666666665665 4555566666655544 44433210 0111 223333578888888887655
Q ss_pred CHHHHHhHHHHHHHH---HhcCChHHHHHhcChhHHHHHHHHHhcCCCCcccchhhhhhhhhccC
Q 036104 206 PPEVHANAAETLCAI---TRNAPSALATKLASPSFVARIFGHALEDSRSKSSLVHSLSVCISLLD 267 (758)
Q Consensus 206 s~dih~NAae~LkaI---srn~Pn~L~r~L~S~e~I~~Ll~~mL~~~~s~SsLVngIsILIeLLr 267 (758)
..+--.||++.|..+ ....|.-|...| ..+|+-.+.++-++.-..+.-..+|.+|+++.+
T Consensus 216 ~~~d~~~a~~~l~~l~El~e~~pk~l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e 278 (1075)
T KOG2171|consen 216 QDGDDDAAKSALEALIELLESEPKLLRPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSE 278 (1075)
T ss_pred hccchHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 544455555555554 444444333333 133333333443443334555667777777765
No 15
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=37.48 E-value=55 Score=23.79 Aligned_cols=35 Identities=29% Similarity=0.222 Sum_probs=28.6
Q ss_pred HHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHH
Q 036104 186 QWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAIT 221 (758)
Q Consensus 186 eWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIs 221 (758)
.-+.+.+.|+.|+.+|. +.+.+++.+|+..|..|+
T Consensus 6 ~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 6 QAVVDAGGLPALVELLK-SEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHc
Confidence 34556788999999998 567999999999988775
No 16
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=36.40 E-value=1.3e+02 Score=35.07 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=39.3
Q ss_pred HHHHHHHHHhccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHH
Q 036104 162 SIMEVLVRLVGADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAI 220 (758)
Q Consensus 162 aImDLLLrLIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaI 220 (758)
.+-||+||.+.+.+-+ ..+..=+-+|.+|-||+++++.+..-++ ++|+.|
T Consensus 151 lvye~~Lrf~~sp~~d----~~vaK~yid~~FvlkLLdLFdSEDpRER-----e~LKT~ 200 (457)
T KOG2085|consen 151 LVYEFLLRFLESPDFD----PSVAKKYIDQKFVLKLLDLFDSEDPRER-----EFLKTI 200 (457)
T ss_pred HHHHHHHHHHhCcccC----HHHHHHHhhHHHHHHHHHHhcCCChHHH-----HHHHHH
Confidence 5779999999877642 4677777889999999999998888776 455553
No 17
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=36.12 E-value=1.2e+02 Score=29.40 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=46.5
Q ss_pred HHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHhcCC
Q 036104 193 LLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHALEDS 249 (758)
Q Consensus 193 LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~~~ 249 (758)
.+..|-.+|.. .++.+|..|-.+|-.+..|+..++..++.+.++++.|...+-...
T Consensus 43 a~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~ 98 (140)
T PF00790_consen 43 AARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKK 98 (140)
T ss_dssp HHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCC
Confidence 44455556655 778899999999999999999999999999999999998877653
No 18
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=35.94 E-value=4.8e+02 Score=29.64 Aligned_cols=195 Identities=14% Similarity=0.182 Sum_probs=103.6
Q ss_pred hhhhhhcCCCCCHHHHhCChhHHHHHHhcchhHHHHhcCHHHHHHHHhhhccCCCCCh-HHhhhcccccceehhcccchH
Q 036104 13 PVESVLDKENFTLEELLDEEEIIQECKALNSRLINFLRDREQVEKLLRYIVEEAPADA-ESKQAFKFPFVACEIFTCEID 91 (758)
Q Consensus 13 ~IDsLLdked~TLEeLLDEdDLLQE~KaqN~KLIdFL~kpevLekLI~YI~~eppEd~-e~k~~~Kyp~IAsEILSsdi~ 91 (758)
-++.|++...-+.+-.|-.-.++-||+. ..-|-.|+....++++...|+-.+.-+=. +--..| .|+|+.--.
T Consensus 127 ~~~~lv~~~~~~~~iaL~cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tf------K~llt~Hk~ 199 (342)
T KOG1566|consen 127 ILDNLVKGYENTPEIALTCGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTF------KELLTRHKS 199 (342)
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHH------HHHHHHhHH
Confidence 4677777532278889999999999997 78899999999999999999966532100 000011 122223223
Q ss_pred HHHHHhhcCHHH-HHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCc--hhHHHHHHhCccHHHHHHH-------hhCCh
Q 036104 92 VILKTLVEEEEL-MNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKT--VPLMNYVQIHPDVFRRLVD-------LIGIT 161 (758)
Q Consensus 92 ~I~d~Lvene~L-L~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt--~eml~FIk~~~~iVd~LLk-------HIdis 161 (758)
.+.+.|..|.+. ...-+++|-. ..|-+.+-.+.|.++.|+.-++ ..|-.||.+-.+ +..|+. .|...
T Consensus 200 ~vaEfl~~n~d~ff~e~~~~Ll~--s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~en-LKlmM~llrdkskniQ~e 276 (342)
T KOG1566|consen 200 VVAEFLIRNYDNFFAEVYEKLLR--SENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPEN-LKLMMNLLRDKSKNIQLE 276 (342)
T ss_pred HHHHHHHhChhhhHHHHHHHHhc--ccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHH-HHHHHHHhhCccccchHH
Confidence 333334433321 2333444432 2356667777788777776554 356677775332 333332 23333
Q ss_pred HHHHHHHHHhccCCCCCCChhhHHHHhhh-hhHHHHHHHhhCCCCCHHHHHh--HHHHHHHHHh
Q 036104 162 SIMEVLVRLVGADDHAYPNFMDVMQWLAD-SNLLEMIVNKLSPLCPPEVHAN--AAETLCAITR 222 (758)
Q Consensus 162 aImDLLLrLIs~De~~~p~~~~IieWL~e-q~LI~rLI~lL~ps~s~dih~N--Aae~LkaIsr 222 (758)
+--. .|+-..-... | +.|.+.|.. +.=+.+++.-+++...++.|=+ -+.++++|-.
T Consensus 277 AFhv--FKvfvAnpnK-~--q~V~~IL~~Nr~KLl~~l~~f~~d~~~DeqF~dEk~~~i~eI~~ 335 (342)
T KOG1566|consen 277 AFHV--FKVFVANPNK-P--QPVRDILVRNRPKLLELLHDFHTDRTEDEQFLDEKAYLIKEIRQ 335 (342)
T ss_pred HHHH--HHHHhcCCCC-C--chHHHHHHhCcHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHh
Confidence 3222 2222222111 1 457777765 3333344455555543444433 3555666643
No 19
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=35.51 E-value=3e+02 Score=23.95 Aligned_cols=110 Identities=14% Similarity=0.084 Sum_probs=63.3
Q ss_pred HHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCC--hHHHHHHHHHhccCCCCCCC
Q 036104 103 LMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGI--TSIMEVLVRLVGADDHAYPN 180 (758)
Q Consensus 103 LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdi--saImDLLLrLIs~De~~~p~ 180 (758)
.+..|..+|.+.. +-+.-.-...+..+.... .+...++.. .++++.+++.+.. +.+..--+..++-=-...
T Consensus 8 ~i~~l~~~l~~~~---~~~~~~a~~~l~~l~~~~-~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~-- 80 (120)
T cd00020 8 GLPALVSLLSSSD---ENVQREAAWALSNLSAGN-NDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAGP-- 80 (120)
T ss_pred ChHHHHHHHHcCC---HHHHHHHHHHHHHHhcCC-HHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc--
Confidence 4556666666443 333334445555555443 333444443 3677777777764 344444333333110001
Q ss_pred hhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHH
Q 036104 181 FMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAIT 221 (758)
Q Consensus 181 ~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIs 221 (758)
.....-+.+.++++.|+..|+.. +..+...|+.+|+.|+
T Consensus 81 -~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 -EDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLA 119 (120)
T ss_pred -HHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence 13345556778999999999866 6788889988888764
No 20
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=35.04 E-value=1.4e+02 Score=28.58 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=45.7
Q ss_pred HHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHhcC
Q 036104 193 LLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHALED 248 (758)
Q Consensus 193 LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~~ 248 (758)
.+..|-.+|.. .++.+|..|-.+|-.++.|+..++..++.+.+++..|++.+...
T Consensus 38 a~raL~krl~~-~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~ 92 (133)
T cd03561 38 AARAIRKKIKY-GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS 92 (133)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC
Confidence 44555566765 47889999999999999999999999999999999988777654
No 21
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=33.75 E-value=1.9e+02 Score=29.40 Aligned_cols=121 Identities=18% Similarity=0.280 Sum_probs=68.7
Q ss_pred HHHHHhhcCCCCC----CChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCChH----H----HHHHHHHh
Q 036104 104 MNLLFSFLEPNRP----HSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGITS----I----MEVLVRLV 171 (758)
Q Consensus 104 L~kL~SFLd~~~p----lNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdisa----I----mDLLLrLI 171 (758)
+..|.+.++.... ....| +|..+.+..||.... --|+-+ .+.||.+...-+..++ | ..+|-.++
T Consensus 13 l~~L~~~iE~g~~~~~~~~~~L-a~~L~af~eLMeHg~-vsWd~l--~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~V 88 (160)
T PF11841_consen 13 LTLLIKMIEEGTEIQPCKGEIL-AYALTAFVELMEHGI-VSWDTL--SDSFIKKIASYVNSSAMDASILQRSLAILESIV 88 (160)
T ss_pred HHHHHHHHHcCCccCcchHHHH-HHHHHHHHHHHhcCc-Cchhhc--cHHHHHHHHHHHccccccchHHHHHHHHHHHHH
Confidence 3456666654432 12333 577777777777532 112211 1234444444444332 1 23333343
Q ss_pred ccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCCh----HHHHHhcChh
Q 036104 172 GADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPS----ALATKLASPS 236 (758)
Q Consensus 172 s~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn----~L~r~L~S~e 236 (758)
.. .....++..++=-+++|+..|.. .+.++|.||--+|.++-.++|+ .+...|.+..
T Consensus 89 l~-------S~~ly~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~~k~ 149 (160)
T PF11841_consen 89 LN-------SPKLYQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALFLKADDSKRKEIAETLSQKQ 149 (160)
T ss_pred hC-------CHHHHHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 32 23455667777778899998887 7889999999999998777654 3555554444
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.72 E-value=4e+02 Score=32.03 Aligned_cols=200 Identities=17% Similarity=0.262 Sum_probs=110.4
Q ss_pred ChhHHHHHHhcchhHHHHhcCHHHHHHHHhhhccCCCCChHHhhhcccccceehhcccchHHHHHHhhcCHHHHHHHHhh
Q 036104 31 EEEIIQECKALNSRLINFLRDREQVEKLLRYIVEEAPADAESKQAFKFPFVACEIFTCEIDVILKTLVEEEELMNLLFSF 110 (758)
Q Consensus 31 EdDLLQE~KaqN~KLIdFL~kpevLekLI~YI~~eppEd~e~k~~~Kyp~IAsEILSsdi~~I~d~Lvene~LL~kL~SF 110 (758)
.+.|-.|+-..|+||--++++++++-+..-|+.---.++.....+.+ .+.+...|..-
T Consensus 255 netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMr----------------------rkniV~mLVKa 312 (791)
T KOG1222|consen 255 NETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMR----------------------RKNIVAMLVKA 312 (791)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----------------------HHhHHHHHHHH
Confidence 34556778788999999999999887777776554333321111111 22333444444
Q ss_pred cCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCC--hHHHHHHHHHh---ccCCCCCCChhhHH
Q 036104 111 LEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGI--TSIMEVLVRLV---GADDHAYPNFMDVM 185 (758)
Q Consensus 111 Ld~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdi--saImDLLLrLI---s~De~~~p~~~~Ii 185 (758)
|+....--.++..-|.|=++.....|. . ..+-++|.+|+|.+-+ +.+...-++|+ +.|. +..
T Consensus 313 Ldr~n~~Ll~lv~~FLkKLSIf~eNK~-~-----M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-------glr 379 (791)
T KOG1222|consen 313 LDRSNSSLLTLVIKFLKKLSIFDENKI-V-----MEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-------GLR 379 (791)
T ss_pred HcccchHHHHHHHHHHHHhhhhccchH-H-----HHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-------ccc
Confidence 554432112233344454444444432 2 2334788888887754 45555555555 3343 222
Q ss_pred HHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHhcCCCCcccchhhhhhhhhc
Q 036104 186 QWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHALEDSRSKSSLVHSLSVCISL 265 (758)
Q Consensus 186 eWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~~~~s~SsLVngIsILIeL 265 (758)
.=+-.-+++|+|..+|+...-..+ |--+|--|+ ..+-.-.-+.-.+||..|.+.+|.+..++ +-...|+.||.|
T Consensus 380 ~KMv~~GllP~l~~ll~~d~~~~i---A~~~lYh~S--~dD~~K~MfayTdci~~lmk~v~~~~~~~-vdl~lia~ciNl 453 (791)
T KOG1222|consen 380 PKMVNGGLLPHLASLLDSDTKHGI---ALNMLYHLS--CDDDAKAMFAYTDCIKLLMKDVLSGTGSE-VDLALIALCINL 453 (791)
T ss_pred HHHhhccchHHHHHHhCCcccchh---hhhhhhhhc--cCcHHHHHHHHHHHHHHHHHHHHhcCCce-ecHHHHHHHHHH
Confidence 333456899999999986543322 222222222 22334444555699999999998764322 223345667776
Q ss_pred -cCCCcc
Q 036104 266 -LDPKRS 271 (758)
Q Consensus 266 -Lrknns 271 (758)
+.|+|.
T Consensus 454 ~lnkRNa 460 (791)
T KOG1222|consen 454 CLNKRNA 460 (791)
T ss_pred Hhccccc
Confidence 345554
No 23
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=29.56 E-value=7.6e+02 Score=26.81 Aligned_cols=190 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred hHHHHh-cCHHHHHHHHhhhccCCCCChHHhhhcccccceehhcccchHHHHHHhhc-----CHHHHHHHHhhcCCCCCC
Q 036104 44 RLINFL-RDREQVEKLLRYIVEEAPADAESKQAFKFPFVACEIFTCEIDVILKTLVE-----EEELMNLLFSFLEPNRPH 117 (758)
Q Consensus 44 KLIdFL-~kpevLekLI~YI~~eppEd~e~k~~~Kyp~IAsEILSsdi~~I~d~Lve-----ne~LL~kL~SFLd~~~pl 117 (758)
+|+.-+ .++++++.++..| +|+|+.+- ...+.+.+ +......|+.+++++
T Consensus 62 ~lL~~~~~~~d~v~yvL~li--------------------~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~ll~~~--- 117 (312)
T PF03224_consen 62 NLLNKLSSNDDTVQYVLTLI--------------------DDLLSDDP-SRVELFLELAKQDDSDPYSPFLKLLDRN--- 117 (312)
T ss_dssp HHHHHH---HHHHHHHHHHH--------------------HHHHH-SS-SSHHHHHHHHH-TTH--HHHHHHH-S-S---
T ss_pred HHHHHccCcHHHHHHHHHHH--------------------HHHHhcCH-HHHHHHHHhcccccchhHHHHHHHhcCC---
Q ss_pred ChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCC----------hHHHHHHHHHhccCCCCCCChhhHHHH
Q 036104 118 SALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGI----------TSIMEVLVRLVGADDHAYPNFMDVMQW 187 (758)
Q Consensus 118 NplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdi----------saImDLLLrLIs~De~~~p~~~~IieW 187 (758)
+....-.-++++..|+...+...-... .+++..+++.+.. ...+..|-.|+..+ ..-..
T Consensus 118 D~~i~~~a~~iLt~Ll~~~~~~~~~~~---~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~--------~~R~~ 186 (312)
T PF03224_consen 118 DSFIQLKAAFILTSLLSQGPKRSEKLV---KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK--------EYRQV 186 (312)
T ss_dssp SHHHHHHHHHHHHHHHTSTTT--HHHH---HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH--------HHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccchH---HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc--------hhHHH
Q ss_pred hhhhhHHHHHHHhh------CCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHhcCCCCcccchhhhhh
Q 036104 188 LADSNLLEMIVNKL------SPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHALEDSRSKSSLVHSLSV 261 (758)
Q Consensus 188 L~eq~LI~rLI~lL------~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~~~~s~SsLVngIsI 261 (758)
+-+.+.++.|++.| +.......|..+.-++=-++-+. ..+..+.....|..|.+++=...+ +=++=-++++
T Consensus 187 f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~--~~~~~~~~~~~i~~L~~i~~~~~K-EKvvRv~la~ 263 (312)
T PF03224_consen 187 FWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEP--EIAEELNKKYLIPLLADILKDSIK-EKVVRVSLAI 263 (312)
T ss_dssp HHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSH--HHHHHHHTTSHHHHHHHHHHH--S-HHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCH--HHHHHHhccchHHHHHHHHHhccc-chHHHHHHHH
Q ss_pred hhhccCCCcc
Q 036104 262 CISLLDPKRS 271 (758)
Q Consensus 262 LIeLLrknns 271 (758)
+-.|+.+.+.
T Consensus 264 l~Nl~~~~~~ 273 (312)
T PF03224_consen 264 LRNLLSKAPK 273 (312)
T ss_dssp HHHTTSSSST
T ss_pred HHHHHhccHH
No 24
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.30 E-value=1.1e+03 Score=30.10 Aligned_cols=198 Identities=14% Similarity=0.233 Sum_probs=91.5
Q ss_pred hHHHHHHhcchhHHHHhcCHHHHHHHHhhhccCCCCChHHhhhcccccceehhcccchHHHHHHhhcCH----HHHHHHH
Q 036104 33 EIIQECKALNSRLINFLRDREQVEKLLRYIVEEAPADAESKQAFKFPFVACEIFTCEIDVILKTLVEEE----ELMNLLF 108 (758)
Q Consensus 33 DLLQE~KaqN~KLIdFL~kpevLekLI~YI~~eppEd~e~k~~~Kyp~IAsEILSsdi~~I~d~Lvene----~LL~kL~ 108 (758)
-+++|+-..|...++|+++ .+..||..+-+...-.. ..-|.|..|+.-.|-+.+=.+...|..+. ++|+-+.
T Consensus 201 ~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~y--speydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiL 276 (866)
T KOG1062|consen 201 HLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGY--SPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDIL 276 (866)
T ss_pred HHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCC--CCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 4667766668888888876 55555555443210000 01245555655555555555566666542 3444333
Q ss_pred hhc--CCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhC----ChHHHHHHHHHhccCCCCC-CCh
Q 036104 109 SFL--EPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIG----ITSIMEVLVRLVGADDHAY-PNF 181 (758)
Q Consensus 109 SFL--d~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHId----isaImDLLLrLIs~De~~~-p~~ 181 (758)
.=+ +.+...|.--|=.| -.|.+++.-++..=+.-+- =+++.+|+..=+ .-+ ...|+|+|+.|...- ..+
T Consensus 277 aqvatntdsskN~GnAILY-E~V~TI~~I~~~~~Lrvla--iniLgkFL~n~d~NirYva-Ln~L~r~V~~d~~avqrHr 352 (866)
T KOG1062|consen 277 AQVATNTDSSKNAGNAILY-ECVRTIMDIRSNSGLRVLA--INILGKFLLNRDNNIRYVA-LNMLLRVVQQDPTAVQRHR 352 (866)
T ss_pred HHHHhcccccccchhHHHH-HHHHHHHhccCCchHHHHH--HHHHHHHhcCCccceeeee-hhhHHhhhcCCcHHHHHHH
Confidence 222 22334444444223 3334444433321111110 022222221111 111 244455555543211 111
Q ss_pred hhHHHHhhh----------------------hhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHh-cCChHHHHHhcChhHH
Q 036104 182 MDVMQWLAD----------------------SNLLEMIVNKLSPLCPPEVHANAAETLCAITR-NAPSALATKLASPSFV 238 (758)
Q Consensus 182 ~~IieWL~e----------------------q~LI~rLI~lL~ps~s~dih~NAae~LkaIsr-n~Pn~L~r~L~S~e~I 238 (758)
.-|++.|.+ .-++++|+++|... +++...+++.-++.++. .+|+ ..=+|
T Consensus 353 ~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~-------k~W~i 424 (866)
T KOG1062|consen 353 STILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPD-------KRWHI 424 (866)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCc-------chhHH
Confidence 223333322 22567888888877 77777777777777653 4664 33345
Q ss_pred HHHHHHHh
Q 036104 239 ARIFGHAL 246 (758)
Q Consensus 239 ~~Ll~~mL 246 (758)
+++++..-
T Consensus 425 dtml~Vl~ 432 (866)
T KOG1062|consen 425 DTMLKVLK 432 (866)
T ss_pred HHHHHHHH
Confidence 55555443
No 25
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=27.95 E-value=1.9e+02 Score=27.79 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=44.5
Q ss_pred HHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHhc
Q 036104 193 LLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHALE 247 (758)
Q Consensus 193 LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~ 247 (758)
.+..|-.+|. +.++.+|.-|-.+|-.++.|+..++-.++.+.++++.|...+-.
T Consensus 38 a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~ 91 (133)
T smart00288 38 AVRLLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKP 91 (133)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcC
Confidence 4455666777 56788999999999999999999999999999999988865544
No 26
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=27.55 E-value=8.6e+02 Score=27.41 Aligned_cols=127 Identities=14% Similarity=0.225 Sum_probs=77.3
Q ss_pred hHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhC-ccHHHHHHHhhCCh--HHHHH
Q 036104 90 IDVILKTLVEEEELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIH-PDVFRRLVDLIGIT--SIMEV 166 (758)
Q Consensus 90 i~~I~d~Lvene~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~-~~iVd~LLkHIdis--aImDL 166 (758)
...+...+++++ .+.++|.+++.+. =-.|+=-..++..||.+...-.-+||..+ +.|+..+-+.|..+ ..---
T Consensus 153 ~e~l~~~iL~~~-~f~~ff~~~~~~~---Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 153 HESLAKIILYSE-CFWKFFKYVQLPN---FDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp SHHHHHHHHTSG-GGGGHHHHTTSSS---HHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred hHHHHHHHhCcH-HHHHHHHHhcCCc---cHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 344555555543 4455667766432 33455555778888888777777888765 34666555555433 22222
Q ss_pred HHHHhc---cCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcC
Q 036104 167 LVRLVG---ADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNA 224 (758)
Q Consensus 167 LLrLIs---~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~ 224 (758)
-+||++ .|.. +..-...|+.+...+..+..+|.. .+.-+|--|-.++|=.++|.
T Consensus 229 slkLL~ellldr~---n~~vm~~yi~~~~nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 229 SLKLLGELLLDRS---NFNVMTRYISSPENLKLMMNLLRD-KSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHSGG---GHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-S
T ss_pred hHHHHHHHHHchh---HHHHHHHHHCCHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHhCC
Confidence 233333 2332 445567899988888888888875 45559999999999989874
No 27
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=26.06 E-value=5e+02 Score=29.65 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=88.7
Q ss_pred HHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhC---ChHHHHHHHH
Q 036104 93 ILKTLVEEEELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIG---ITSIMEVLVR 169 (758)
Q Consensus 93 I~d~Lvene~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHId---isaImDLLLr 169 (758)
....|+++..|+.-|-.++.+...-.+.+-++-.-|+..++..-|..+ ..|+.. ++++.+++.|. +++-.|+|..
T Consensus 97 ~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~-~~l~e~-Gl~~~~L~~i~~~~i~~s~e~l~~ 174 (379)
T PF06025_consen 97 RLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSF-SILQEA-GLIDAFLDAITAKGILPSSEVLTS 174 (379)
T ss_pred ccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchh-HHHHHc-CChHHHHHHHhccCCCCcHHHHHH
Confidence 334455556778888888887776777777777888888888777544 445543 67777777776 6777788887
Q ss_pred HhccCCCCCCChhhHHHHhhhhhHHHHHHHhhC-CCCC-----HHHHHhHHHHHHHHHhcCC
Q 036104 170 LVGADDHAYPNFMDVMQWLADSNLLEMIVNKLS-PLCP-----PEVHANAAETLCAITRNAP 225 (758)
Q Consensus 170 LIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~-ps~s-----~dih~NAae~LkaIsrn~P 225 (758)
|-.+-....-| ..-++-+.+.+.++++++.|- |.|- .+.-.+.+--+.++.|.-|
T Consensus 175 lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p 235 (379)
T PF06025_consen 175 LPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHP 235 (379)
T ss_pred HHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCH
Confidence 76655433333 344677777899999999775 4432 2566666777778888653
No 28
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=25.65 E-value=86 Score=29.02 Aligned_cols=41 Identities=17% Similarity=0.409 Sum_probs=30.8
Q ss_pred CCCcchHhHHH-HHHHHHHHhc--------CCcHHHHHHHhhc------cchhHHH
Q 036104 348 APRAGNLGHIT-RISNKLVQLG--------STNSRIHACLQEN------TEWSEWQ 388 (758)
Q Consensus 348 ~~R~GyMGHLT-rIAN~Ivq~~--------~~~~~Iq~~Lqen------~~W~~Fv 388 (758)
-+|+|||.++. ..+.+|.+++ ..|..+++.++.. ..|.+|.
T Consensus 31 yR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~~~~pc~w~qW~ 86 (89)
T PF08444_consen 31 YRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGFIFMPCGWHQWN 86 (89)
T ss_pred HhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCCeecCCcchhce
Confidence 46899999998 6666766663 4688888888864 3888773
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=25.21 E-value=6.7e+02 Score=31.36 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=44.5
Q ss_pred HHHHhhCChHHHHHHHHHhc---cCCCCCCChh---hHHHH-------hhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHH
Q 036104 153 RLVDLIGITSIMEVLVRLVG---ADDHAYPNFM---DVMQW-------LADSNLLEMIVNKLSPLCPPEVHANAAETLCA 219 (758)
Q Consensus 153 ~LLkHIdisaImDLLLrLIs---~De~~~p~~~---~IieW-------L~eq~LI~rLI~lL~ps~s~dih~NAae~Lka 219 (758)
+.|..|.++.|.+.++.-|. .|..+|--.+ .+... ..+.+++++|.++|. ..++.++.||.-.|.+
T Consensus 127 RtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~-D~dp~Vv~nAl~aL~e 205 (746)
T PTZ00429 127 RTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLN-DNNPVVASNAAAIVCE 205 (746)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhc-CCCccHHHHHHHHHHH
Confidence 34566777777776654332 2332221111 11121 124578888888775 6778899999999999
Q ss_pred HHhcCChH
Q 036104 220 ITRNAPSA 227 (758)
Q Consensus 220 Isrn~Pn~ 227 (758)
|...+|+.
T Consensus 206 I~~~~~~~ 213 (746)
T PTZ00429 206 VNDYGSEK 213 (746)
T ss_pred HHHhCchh
Confidence 97655543
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=24.79 E-value=3.3e+02 Score=22.93 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=27.7
Q ss_pred HHhhCChHHHHHHHHHhccCCCCCCChhhHHHH---hhhhhHHHHHHHhhCCCCCHHHHHhHHHH
Q 036104 155 VDLIGITSIMEVLVRLVGADDHAYPNFMDVMQW---LADSNLLEMIVNKLSPLCPPEVHANAAET 216 (758)
Q Consensus 155 LkHIdisaImDLLLrLIs~De~~~p~~~~IieW---L~eq~LI~rLI~lL~ps~s~dih~NAae~ 216 (758)
+..++.+.+...|++++..+.+ .-+...+.. +...+.++.|++.+....+..++..|..-
T Consensus 24 L~~~~~~~~~~~L~~~l~d~~~--~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 24 LGELGDPEAIPALIELLKDEDP--MVRRAAARALGRIGDPEAIPALIKLLQDDDDEVVREAAAEA 86 (88)
T ss_dssp HHCCTHHHHHHHHHHHHTSSSH--HHHHHHHHHHHCCHHHHTHHHHHHHHTC-SSHHHHHHHHHH
T ss_pred HHHcCCHhHHHHHHHHHcCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHcCCCcHHHHHHHHhh
Confidence 3344555555555555532211 011122222 23455666666666665555555555443
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.78 E-value=6.1e+02 Score=31.01 Aligned_cols=89 Identities=21% Similarity=0.337 Sum_probs=54.7
Q ss_pred hCChHHHHHHHHHhccCCCCCCChhhHHHHhh-------------hhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhc-
Q 036104 158 IGITSIMEVLVRLVGADDHAYPNFMDVMQWLA-------------DSNLLEMIVNKLSPLCPPEVHANAAETLCAITRN- 223 (758)
Q Consensus 158 IdisaImDLLLrLIs~De~~~p~~~~IieWL~-------------eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn- 223 (758)
|+..+|+++|.|.++-+.-+ .+-.+++|+. ...+.+.|+..|+...+. +..-+-++|..|+..
T Consensus 332 id~~~ii~vl~~~l~~~~~~--tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~-vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 332 IDYGSIIEVLTKYLSDDREE--TRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDE-VVLLALSLLASICSSS 408 (675)
T ss_pred cchHHHHHHHHHHhhcchHH--HHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhH-HHHHHHHHHHHHhcCc
Confidence 77789999999999987542 3456788863 234666777777654443 334444444444321
Q ss_pred -------------------------CChHHHHHhc---ChhHHHHHHHHHhcCC
Q 036104 224 -------------------------APSALATKLA---SPSFVARIFGHALEDS 249 (758)
Q Consensus 224 -------------------------~Pn~L~r~L~---S~e~I~~Ll~~mL~~~ 249 (758)
..+=+.|||+ ++|.|=+-|.-|+...
T Consensus 409 ~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e 462 (675)
T KOG0212|consen 409 NSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILERE 462 (675)
T ss_pred ccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhcc
Confidence 2244556654 5677777777777653
No 32
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.87 E-value=1.4e+03 Score=27.94 Aligned_cols=178 Identities=16% Similarity=0.301 Sum_probs=90.6
Q ss_pred hhhhhhcCCCCCHHHHhCChhHHHHHHhcchhHHHHhcCHHHHHHHHhhhccCCCCChHHhhhccc----cccee--h--
Q 036104 13 PVESVLDKENFTLEELLDEEEIIQECKALNSRLINFLRDREQVEKLLRYIVEEAPADAESKQAFKF----PFVAC--E-- 84 (758)
Q Consensus 13 ~IDsLLdked~TLEeLLDEdDLLQE~KaqN~KLIdFL~kpevLekLI~YI~~eppEd~e~k~~~Ky----p~IAs--E-- 84 (758)
.+.++|.+..++=-+|- -|.++..+.++-=++||+.|..++-|++-+..... ......+-|| +|-|| |
T Consensus 289 ai~smLs~~~l~paDI~---~Ly~~Y~~~~pPPV~lLR~P~~l~lLld~LF~pg~-~i~~e~r~kyi~LLAYAasV~e~~ 364 (584)
T PF04858_consen 289 AIASMLSSNALNPADIT---KLYRMYSSPDPPPVELLRHPQFLDLLLDALFKPGS-KINPEHRSKYIYLLAYAASVVETP 364 (584)
T ss_pred HHHHHHhcCCCCHHHHH---HHHHHhccCCCCCchhhcCHHHHHHHHHHHcCCCc-cCCHHHHHHHHHHHHHHHHccccc
Confidence 46677777554433332 35555567788899999999999999998887532 1111223333 33333 2
Q ss_pred -------hcccc-hHHHHHHhh------cC--------HHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHH
Q 036104 85 -------IFTCE-IDVILKTLV------EE--------EELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMN 142 (758)
Q Consensus 85 -------ILSsd-i~~I~d~Lv------en--------e~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~ 142 (758)
-+.+| +.....+|- .+ ..-+.+|++.++. |+.|.-..+-+.+.+... .+++
T Consensus 365 ~~~~~~~~~~~del~~t~~ale~a~~ic~~~~~g~~~~~~el~~L~~~i~~-----PvVa~GVL~wi~~~l~~~--~~~~ 437 (584)
T PF04858_consen 365 AKNQPDRSLNCDELKSTKQALEKAHAICCNAARGSSELQAELPKLYSCIRY-----PVVAMGVLRWIESFLTDP--SYFS 437 (584)
T ss_pred ccCcccccccHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhCC-----ChhhHHHHHHHHHHhcCc--chhh
Confidence 12221 222111111 11 1235556665543 223333334444444332 2333
Q ss_pred HHHhCccHHHHHHHhhC------ChHHHHHHHHHhccCCCCCCChhhHHHHhh-hhhHHHHHHHhhCCCC
Q 036104 143 YVQIHPDVFRRLVDLIG------ITSIMEVLVRLVGADDHAYPNFMDVMQWLA-DSNLLEMIVNKLSPLC 205 (758)
Q Consensus 143 FIk~~~~iVd~LLkHId------isaImDLLLrLIs~De~~~p~~~~IieWL~-eq~LI~rLI~lL~ps~ 205 (758)
.+-...-+.=.||++|- -+.+.++|.+++...-.+ ..++.-|. ...+|.++|-++.-.+
T Consensus 438 ~~~~~~p~~L~LLdeIa~~Hp~lr~~vl~lL~~~le~~~~~----l~~l~~le~kr~ilD~~V~L~s~G~ 503 (584)
T PF04858_consen 438 SITELTPVHLALLDEIATRHPLLRPSVLDLLVRLLESEGDE----LDILVQLELKRTILDRMVHLLSRGY 503 (584)
T ss_pred hccccCchHHHHhhHHHhcCHhhHHHHHHHHHHHHHccCCc----ccHHHHHHHHHHHHHHHHHHHhCCe
Confidence 33332233335555554 347788888888754322 23323332 3567778877776544
No 33
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=23.73 E-value=48 Score=22.91 Aligned_cols=11 Identities=64% Similarity=1.138 Sum_probs=7.8
Q ss_pred CChhHHHHHHh
Q 036104 30 DEEEIIQECKA 40 (758)
Q Consensus 30 DEdDLLQE~Ka 40 (758)
|+++|||||-.
T Consensus 1 d~deiL~~CI~ 11 (20)
T PF05924_consen 1 DEDEILQECIG 11 (20)
T ss_dssp --HHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 56799999975
No 34
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=22.49 E-value=1.8e+02 Score=30.20 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHhhCC---CCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHhcC
Q 036104 189 ADSNLLEMIVNKLSP---LCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHALED 248 (758)
Q Consensus 189 ~eq~LI~rLI~lL~p---s~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~~ 248 (758)
.+++.|.+|+++++. ..+.+.-...++++++|.-..-..+...|.|.+++..++.++=.+
T Consensus 2 ~~~~Yi~kL~~lF~~~E~~~~~~~L~~l~~Ivk~li~ln~~~i~e~llsde~i~~vvG~LEYD 64 (193)
T PF04802_consen 2 ENENYIKKLLDLFHQCEDLEDLEGLHLLFDIVKTLILLNDPEIFEILLSDENIMDVVGILEYD 64 (193)
T ss_pred cchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCchHHHHHhchHHHHHHhhhhccC
Confidence 357889999999873 456666677888888887777778899999999888887765433
No 35
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=22.37 E-value=6.8e+02 Score=28.22 Aligned_cols=88 Identities=16% Similarity=0.230 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCch----hHHHHHHhC-ccHHHHHHHhhCChHHHH----HHHHHhccCCCCCCChhhHHHHhhhhhHH
Q 036104 124 YFSKVVVCLMLRKTV----PLMNYVQIH-PDVFRRLVDLIGITSIME----VLVRLVGADDHAYPNFMDVMQWLADSNLL 194 (758)
Q Consensus 124 YFsKIv~~LL~rkt~----eml~FIk~~-~~iVd~LLkHIdisaImD----LLLrLIs~De~~~p~~~~IieWL~eq~LI 194 (758)
-.+-|..+|+.++.. ...+||..+ |++++.|++.-+.+.|+= +|--+|. . ..+..++-+...+
T Consensus 95 dv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k---~-----e~l~~~iL~~~~f 166 (335)
T PF08569_consen 95 DVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIK---H-----ESLAKIILYSECF 166 (335)
T ss_dssp HHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTT---S-----HHHHHHHHTSGGG
T ss_pred cHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHh---h-----HHHHHHHhCcHHH
Confidence 456677788877643 368899999 999999999888776542 2222222 1 1233344344455
Q ss_pred HHHHHhhCCCCCHHHHHhHHHHHHHH
Q 036104 195 EMIVNKLSPLCPPEVHANAAETLCAI 220 (758)
Q Consensus 195 ~rLI~lL~ps~s~dih~NAae~LkaI 220 (758)
.++.+.+. ...-++.+.|-.+++++
T Consensus 167 ~~ff~~~~-~~~Fdiasdaf~t~~~l 191 (335)
T PF08569_consen 167 WKFFKYVQ-LPNFDIASDAFSTFKEL 191 (335)
T ss_dssp GGHHHHTT-SSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCccHhHHHHHHHHHHH
Confidence 55655533 56677888887888775
No 36
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.23 E-value=1.3e+03 Score=29.60 Aligned_cols=205 Identities=13% Similarity=0.224 Sum_probs=109.5
Q ss_pred HhcCHHHHHHHHhhhccCCCCChHHhhhccccc--ceehhcccchHHHHHHhhcCHHHHHHHHhhcCCCC-C-CChhhhh
Q 036104 48 FLRDREQVEKLLRYIVEEAPADAESKQAFKFPF--VACEIFTCEIDVILKTLVEEEELMNLLFSFLEPNR-P-HSALLAG 123 (758)
Q Consensus 48 FL~kpevLekLI~YI~~eppEd~e~k~~~Kyp~--IAsEILSsdi~~I~d~Lvene~LL~kL~SFLd~~~-p-lNplLAg 123 (758)
|+.++++|.-|+.|+-.- .-+.|.+- +.+-+|+|--..+.++|+..|.-..+|.+.|.... | .|..+
T Consensus 117 fik~qd~I~lll~~~e~~-------DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~i-- 187 (970)
T KOG0946|consen 117 FIKNQDNITLLLQSLEEF-------DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAI-- 187 (970)
T ss_pred HHcCchhHHHHHHHHHhh-------chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHH--
Confidence 444566666666666222 12233333 36778888888899999999988888888876432 1 22211
Q ss_pred hHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCChH-------HHHHHHHHhccCCCCCCChhhHHHHhhhhhHHHH
Q 036104 124 YFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGITS-------IMEVLVRLVGADDHAYPNFMDVMQWLADSNLLEM 196 (758)
Q Consensus 124 YFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdisa-------ImDLLLrLIs~De~~~p~~~~IieWL~eq~LI~r 196 (758)
| .+..|..-.+ =+.=|-...|++++|+.-|.... |-|-|.-|...=+.-. .=-+++.|...|+|
T Consensus 188 L---lL~eL~k~n~--~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~----SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 188 L---LLSELVKDNS--SIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI----SNQNFFREGSYIPR 258 (970)
T ss_pred H---HHHHHHccCc--hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc----chhhHHhccccHHH
Confidence 1 1122222222 12223334677777777765432 2232222222212111 11368889999999
Q ss_pred HHHhhCC-C--------CCHHHHHhHHHHHHHHHhc-CC-------hHHHHHhcChhHHHHHHHHHhcCCCCcccchhhh
Q 036104 197 IVNKLSP-L--------CPPEVHANAAETLCAITRN-AP-------SALATKLASPSFVARIFGHALEDSRSKSSLVHSL 259 (758)
Q Consensus 197 LI~lL~p-s--------~s~dih~NAae~LkaIsrn-~P-------n~L~r~L~S~e~I~~Ll~~mL~~~~s~SsLVngI 259 (758)
|..+|+- . .+..+..|+-..|..+... .| ..--+-|.+-..+..|..+.+..+-+.-.+--++
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi 338 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI 338 (970)
T ss_pred HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence 9988873 1 2345566665544444322 11 1222456677777778777776543333333334
Q ss_pred hhhhhccCCCc
Q 036104 260 SVCISLLDPKR 270 (758)
Q Consensus 260 sILIeLLrknn 270 (758)
-.+-+.+|.|.
T Consensus 339 itvAevVRgn~ 349 (970)
T KOG0946|consen 339 ITVAEVVRGNA 349 (970)
T ss_pred HHHHHHHHhch
Confidence 44456666553
No 37
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=21.95 E-value=1e+03 Score=30.64 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=48.0
Q ss_pred HHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChh----HHHHHHHHHhcCCCCcccchhhhhhhhhccCC
Q 036104 193 LLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPS----FVARIFGHALEDSRSKSSLVHSLSVCISLLDP 268 (758)
Q Consensus 193 LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e----~I~~Ll~~mL~~~~s~SsLVngIsILIeLLrk 268 (758)
..+-+++..--+.+.+.-.|++|.|.+.+.+++.+++..=-+|. +|-+.+...|+...++++-...=-++++||.+
T Consensus 660 ~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~ 739 (1005)
T KOG2274|consen 660 AFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITH 739 (1005)
T ss_pred HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHH
Confidence 44566665555777788899999999998876666555444443 45566666666554444322222456677654
Q ss_pred C
Q 036104 269 K 269 (758)
Q Consensus 269 n 269 (758)
-
T Consensus 740 a 740 (1005)
T KOG2274|consen 740 A 740 (1005)
T ss_pred H
Confidence 3
No 38
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=21.86 E-value=5.6e+02 Score=28.70 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=64.2
Q ss_pred HHHHHHHhcCchhHHHHHHhC--ccHHHHHHHhhCChHHHHHHHHHhccCCCCCCChhhHHHHhhhhhHHHHHHHhhCC-
Q 036104 127 KVVVCLMLRKTVPLMNYVQIH--PDVFRRLVDLIGITSIMEVLVRLVGADDHAYPNFMDVMQWLADSNLLEMIVNKLSP- 203 (758)
Q Consensus 127 KIv~~LL~rkt~eml~FIk~~--~~iVd~LLkHIdisaImDLLLrLIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~p- 203 (758)
+.+-.||..-.-++++.|-.+ |+.-..+|.++.-....|++.|+.+++... ..+++=+. .++.+.+.....
T Consensus 121 ~~la~~l~~EhPQ~iAliLs~L~p~~AA~VL~~Lp~~~~~ei~~ria~l~~vs----~~~i~~ie--~~L~~~~~~~~~~ 194 (338)
T TIGR00207 121 QQIADFIQQEHPQTIALILSHLDPAQAADILSLFPEEVQAEVARRIATMGRTS----PEVVAEVE--RVLEGKLDSLNSD 194 (338)
T ss_pred HHHHHHHHccCHHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----HHHHHHHH--HHHHHHHHhhccc
Confidence 444445555555555555443 455556667777777888888998888753 23332221 233433333322
Q ss_pred CCCHHHHHhHHHHHHHHHhcCChHHHHHhc--ChhHHHHHHHHHhc
Q 036104 204 LCPPEVHANAAETLCAITRNAPSALATKLA--SPSFVARIFGHALE 247 (758)
Q Consensus 204 s~s~dih~NAae~LkaIsrn~Pn~L~r~L~--S~e~I~~Ll~~mL~ 247 (758)
.....-+..++++|..+-+..-..++..|. .|+..+++-+.||.
T Consensus 195 ~~~~gG~~~~a~ILN~~~~~~~~~il~~L~~~dp~la~~Ir~~mF~ 240 (338)
T TIGR00207 195 YTKMGGVRAVAEIINLMDRKTEKTIITSLEEFDPELAEEIKKEMFV 240 (338)
T ss_pred cccCChHHHHHHHHHhCCchHHHHHHHHHHHhCHHHHHHHHHHccC
Confidence 234456777888887765443344555444 35666666666663
No 39
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=21.66 E-value=1.3e+03 Score=28.31 Aligned_cols=91 Identities=10% Similarity=0.196 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhcCchhHHHHHHh-Cc-cHHHHHHHhhCChHHHHHHHHHhccCCCCCCC-hhhHHHHhhhhhHHHHHHHh
Q 036104 124 YFSKVVVCLMLRKTVPLMNYVQI-HP-DVFRRLVDLIGITSIMEVLVRLVGADDHAYPN-FMDVMQWLADSNLLEMIVNK 200 (758)
Q Consensus 124 YFsKIv~~LL~rkt~eml~FIk~-~~-~iVd~LLkHIdisaImDLLLrLIs~De~~~p~-~~~IieWL~eq~LI~rLI~l 200 (758)
...|++..||.+-+..+|..+.. .| .+++.+ .+.|+...+|.+...-+...... ..+++.|+ .-.+.-
T Consensus 233 ~lL~~l~~lL~k~~~~FW~~~~~~~p~~ild~I---f~np~f~~~L~~~~~~~~~~~~~~~~~~~sWi------~pf~~S 303 (727)
T PF12726_consen 233 ILLRCLSILLEKLGSDFWDAMGPISPQVILDQI---FDNPAFKKLLLQSQEDEISESDDDLPDLLSWI------SPFLRS 303 (727)
T ss_pred HHHHHHHHHHHhCHHHHhcccCCCCHHHHHHHH---hCChHHHHHHHhhccCCccccchhhHHHHHHH------HHHHHH
Confidence 44589999999999999985553 23 344444 46777777777776544332111 12566674 344455
Q ss_pred hCCCCCHHHHHhHHHHHHHHHhc
Q 036104 201 LSPLCPPEVHANAAETLCAITRN 223 (758)
Q Consensus 201 L~ps~s~dih~NAae~LkaIsrn 223 (758)
|.+.+-.+...-++.+|.+..+.
T Consensus 304 L~~~~~~~~~~~l~~~Ll~~~q~ 326 (727)
T PF12726_consen 304 LSPSQRSQACRKLLHFLLERLQH 326 (727)
T ss_pred hcccchhhHHHHHHHHHHHHHhc
Confidence 55555555555555555554443
No 40
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=21.57 E-value=2.6e+02 Score=27.41 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=44.4
Q ss_pred hHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHH-HHHHHh
Q 036104 192 NLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVAR-IFGHAL 246 (758)
Q Consensus 192 ~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~-Ll~~mL 246 (758)
+.+..|-.+|....++-++.-|-.+|-+++.|+...+-.+++|.++++. |++.+-
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~ 93 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLIN 93 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHc
Confidence 3455666677655677788888888999999999999999999999998 776664
No 41
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=21.25 E-value=8.9e+02 Score=34.00 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=31.5
Q ss_pred HHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHh
Q 036104 186 QWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITR 222 (758)
Q Consensus 186 eWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsr 222 (758)
+-+-+.+.|+.|+++|....+..++.+|+-.|..|++
T Consensus 225 ~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs 261 (2102)
T PLN03200 225 SKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSS 261 (2102)
T ss_pred HHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhc
Confidence 3344778999999999887888999999999999875
No 42
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=20.78 E-value=4.5e+02 Score=27.38 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=34.2
Q ss_pred ChhhHHHHhhh-hhHHHHHHHhhC-CCCCHHHHHhHHHHHHHHH
Q 036104 180 NFMDVMQWLAD-SNLLEMIVNKLS-PLCPPEVHANAAETLCAIT 221 (758)
Q Consensus 180 ~~~~IieWL~e-q~LI~rLI~lL~-ps~s~dih~NAae~LkaIs 221 (758)
+..+|+++|.+ ..++++|.+.+. ++.+.+....+.-+|++++
T Consensus 132 n~~~Iv~~l~~d~~fL~~Lf~~l~~~~~~~~~r~d~v~fL~e~c 175 (193)
T PF04802_consen 132 NQVEIVNMLQDDENFLEELFAILKDPSTSDERRRDGVKFLHEFC 175 (193)
T ss_pred hHHHHHHHHHhCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34689999987 569999999995 5667888888999988864
No 43
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=20.70 E-value=1.4e+03 Score=26.81 Aligned_cols=133 Identities=11% Similarity=0.096 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh-----HHHHHHH--HHhccCCCCCCChhhHHHHhhhhhHHHHHH
Q 036104 126 SKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT-----SIMEVLV--RLVGADDHAYPNFMDVMQWLADSNLLEMIV 198 (758)
Q Consensus 126 sKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis-----aImDLLL--rLIs~De~~~p~~~~IieWL~eq~LI~rLI 198 (758)
...+..|+..+.-.. -|.+.. .+..|+..|... ..-..++ .+++... ...+.+...++|+.|+
T Consensus 165 v~~L~~LL~~~~~R~-~f~~~~--~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~-------~~~~~~~~~~~i~~l~ 234 (429)
T cd00256 165 ARCLQMLLRVDEYRF-AFVLAD--GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNP-------HAAEVLKRLSLIQDLS 234 (429)
T ss_pred HHHHHHHhCCchHHH-HHHHcc--CHHHHHHHHhhccccHHHHHHHHHHHHHHhccH-------HHHHhhccccHHHHHH
Confidence 355666666554331 233332 455555555332 2223222 3344332 2345566688999999
Q ss_pred HhhCCCCCHHHHHhHHHHHHHHHhcC----Ch-HHHHHhcChhHHHHHHHHHhcCCCCcccchhhhhhhhhccCCC
Q 036104 199 NKLSPLCPPEVHANAAETLCAITRNA----PS-ALATKLASPSFVARIFGHALEDSRSKSSLVHSLSVCISLLDPK 269 (758)
Q Consensus 199 ~lL~ps~s~dih~NAae~LkaIsrn~----Pn-~L~r~L~S~e~I~~Ll~~mL~~~~s~SsLVngIsILIeLLrkn 269 (758)
+.+....-+-+..-+--+|+.+...+ +. .+...+..- -+-+++..+-...=++.-|..-+..+-+.|+.+
T Consensus 235 ~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~ 309 (429)
T cd00256 235 DILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-KVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNS 309 (429)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-ChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 98887766666666655565554321 11 111111111 112333333333334455677777777777644
No 44
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=20.33 E-value=1.3e+02 Score=29.67 Aligned_cols=39 Identities=21% Similarity=0.532 Sum_probs=30.6
Q ss_pred CHHHHhCChhHHHHHHhcchhHHHHhcC-----HHHHHHHHhhh
Q 036104 24 TLEELLDEEEIIQECKALNSRLINFLRD-----REQVEKLLRYI 62 (758)
Q Consensus 24 TLEeLLDEdDLLQE~KaqN~KLIdFL~k-----pevLekLI~YI 62 (758)
.+-+++.++++++++++....+++||.+ +++|..|.+|.
T Consensus 87 ~v~~~~~~~ev~~~l~~dk~~nl~~L~~~h~it~e~id~LY~~a 130 (133)
T PF09440_consen 87 PVLELLEDPEVVKNLRSDKKQNLEYLEENHGITPEMIDALYKYA 130 (133)
T ss_pred HHHHHHcCHHHHHHHHccHHHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 3557888899999999877788899954 67778777764
No 45
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=20.07 E-value=3.5e+02 Score=26.69 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=45.2
Q ss_pred hHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHhc
Q 036104 192 NLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHALE 247 (758)
Q Consensus 192 ~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~ 247 (758)
+.+..|..+|.. .++.+|.-|-.+|-+++.|+...+-.+++|.++++.|.+.+-.
T Consensus 37 ~a~ral~KRl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~ 91 (144)
T cd03568 37 DCLKAIMKRLNH-KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIND 91 (144)
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcc
Confidence 445666667764 5688888899999999999999999999999999998777655
Done!