Query 036104
Match_columns 758
No_of_seqs 203 out of 340
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 16:05:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 88.9 4.5 0.00015 38.3 12.4 153 102-266 86-240 (252)
2 4hxt_A De novo protein OR329; 84.0 11 0.00039 35.5 12.3 132 104-245 4-137 (252)
3 4db6_A Armadillo repeat protei 80.6 17 0.00059 33.8 12.0 133 102-244 54-188 (210)
4 4b8j_A Importin subunit alpha- 78.5 6.9 0.00024 42.4 9.6 60 183-243 362-421 (528)
5 4db8_A Armadillo-repeat protei 75.2 29 0.001 33.1 12.1 134 102-245 54-189 (252)
6 4db6_A Armadillo repeat protei 73.9 42 0.0014 31.1 12.5 151 104-266 14-166 (210)
7 1wa5_B Importin alpha subunit; 70.9 21 0.00073 38.7 11.1 132 102-243 341-488 (530)
8 3ul1_B Importin subunit alpha- 68.4 12 0.00041 41.1 8.4 50 167-222 81-130 (510)
9 4db8_A Armadillo-repeat protei 68.4 26 0.0009 33.4 10.0 113 126-245 33-147 (252)
10 1wa5_B Importin alpha subunit; 67.6 15 0.00051 39.9 8.9 133 103-244 300-436 (530)
11 4b8j_A Importin subunit alpha- 63.5 33 0.0011 37.0 10.7 94 149-246 286-381 (528)
12 1xqr_A HSPBP1 protein; armadil 62.3 23 0.00079 36.7 8.8 126 89-224 112-240 (296)
13 2jdq_A Importin alpha-1 subuni 61.5 51 0.0018 34.0 11.3 120 97-223 59-180 (450)
14 3grl_A General vesicular trans 60.7 30 0.001 40.3 10.1 119 143-270 117-244 (651)
15 2jdq_A Importin alpha-1 subuni 60.5 40 0.0014 34.9 10.2 59 185-244 311-369 (450)
16 3grl_A General vesicular trans 57.9 57 0.002 38.1 11.7 125 92-223 112-242 (651)
17 3tpo_A Importin subunit alpha- 57.2 25 0.00085 38.6 8.4 51 166-222 99-149 (529)
18 3tpo_A Importin subunit alpha- 49.1 51 0.0017 36.1 9.2 60 183-243 368-427 (529)
19 1xqr_A HSPBP1 protein; armadil 48.7 62 0.0021 33.5 9.3 151 104-267 83-238 (296)
20 4fdd_A Transportin-1; heat rep 46.9 1.3E+02 0.0043 34.8 12.4 54 191-246 710-764 (852)
21 1jdh_A Beta-catenin; beta-cate 45.4 1.7E+02 0.0057 31.0 12.3 58 186-245 349-406 (529)
22 3ul1_B Importin subunit alpha- 42.5 37 0.0013 37.1 6.8 60 183-243 349-408 (510)
23 2z6h_A Catenin beta-1, beta-ca 42.3 2.3E+02 0.008 31.6 13.4 57 188-246 348-404 (644)
24 1upk_A MO25 protein; transfera 39.4 3.9E+02 0.013 28.9 13.8 125 92-224 155-285 (341)
25 2z6g_A B-catenin; FULL-length, 38.8 5.2E+02 0.018 29.9 19.0 115 95-222 185-305 (780)
26 1xm9_A Plakophilin 1; armadill 36.2 1.8E+02 0.0061 31.3 10.9 160 43-221 273-448 (457)
27 2z6g_A B-catenin; FULL-length, 35.8 2.1E+02 0.0072 33.2 12.0 55 189-245 485-539 (780)
28 3g2s_A C-terminal fragment of 30.7 1.2E+02 0.0042 28.6 7.4 55 192-247 48-102 (149)
29 3nmz_A APC variant protein; pr 30.4 4.2E+02 0.014 29.2 12.7 41 184-224 181-231 (458)
30 3now_A UNC-45 protein, SD10334 30.1 1.8E+02 0.006 34.8 10.2 79 161-241 664-755 (810)
31 3nmw_A APC variant protein; AR 30.0 1.9E+02 0.0066 30.5 9.6 34 189-223 124-157 (354)
32 2qk1_A Protein STU2; STU2P, XM 29.4 2.1E+02 0.0073 28.3 9.4 104 123-232 100-234 (249)
33 2jxc_B Stonin-2, stoned B; end 27.6 58 0.002 25.2 3.6 15 620-634 16-30 (45)
34 4atg_A TAF6; transcription, TF 27.5 2.1E+02 0.007 28.5 8.7 120 120-250 8-145 (196)
35 1elk_A Target of MYB1; superhe 26.6 1.4E+02 0.0047 28.3 7.0 56 192-247 53-109 (157)
36 1xm9_A Plakophilin 1; armadill 25.9 3.6E+02 0.012 28.9 11.1 60 184-246 78-137 (457)
37 3now_A UNC-45 protein, SD10334 24.8 9E+02 0.031 28.8 14.9 133 82-223 399-566 (810)
38 1mhq_A ADP-ribosylation factor 23.4 1.5E+02 0.0051 27.9 6.5 54 192-246 38-91 (148)
39 1x5b_A Signal transducing adap 22.3 2.1E+02 0.0071 27.3 7.4 54 192-246 52-105 (163)
40 3dad_A FH1/FH2 domain-containi 21.4 5.2E+02 0.018 27.8 10.9 102 120-226 175-290 (339)
41 3eg5_B Protein diaphanous homo 21.2 6.7E+02 0.023 26.9 11.9 109 119-230 134-254 (383)
42 3ldz_A STAM-1, signal transduc 21.0 2.4E+02 0.0082 26.1 7.4 53 192-245 42-94 (140)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=88.95 E-value=4.5 Score=38.34 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=91.1
Q ss_pred HHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh--HHHHHHHHHhccCCCCCC
Q 036104 102 ELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT--SIMEVLVRLVGADDHAYP 179 (758)
Q Consensus 102 ~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis--aImDLLLrLIs~De~~~p 179 (758)
..+..|..+|..+ ++.+...-..++.+|....+. ....+.. .+.+..+++.+..+ .+..-.++.+..=-..
T Consensus 86 ~~i~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~~~-~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-- 158 (252)
T 4hxt_A 86 GGVEVLVKLLTST---DSEVQKEAARALANIASGPDE-AIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASG-- 158 (252)
T ss_dssp THHHHHHHHTTCS---SHHHHHHHHHHHHHHTTSCHH-HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--
T ss_pred CCHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHH-HHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--
Confidence 4677788888754 355556667777777654433 3333333 46777777777543 3333333333311100
Q ss_pred ChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHhcCCCCcccchhhh
Q 036104 180 NFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHALEDSRSKSSLVHSL 259 (758)
Q Consensus 180 ~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~~~~s~SsLVngI 259 (758)
..+..+-+.+.+.++.|+.+|. +.++.++..|+..|..|++. .......+.....+..|+..+-.+. ...-..++
T Consensus 159 -~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~ 233 (252)
T 4hxt_A 159 -PDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTSTD--SEVQKEAQ 233 (252)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHH
T ss_pred -CHHHHHHHHHCcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCCCc--HHHHHHHH
Confidence 1234456677899999999998 45689999999999999863 3344555656666776666543321 23334444
Q ss_pred hhhhhcc
Q 036104 260 SVCISLL 266 (758)
Q Consensus 260 sILIeLL 266 (758)
.+|-.|.
T Consensus 234 ~~L~~l~ 240 (252)
T 4hxt_A 234 RALENIK 240 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=84.01 E-value=11 Score=35.53 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=79.0
Q ss_pred HHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh--HHHHHHHHHhccCCCCCCCh
Q 036104 104 MNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT--SIMEVLVRLVGADDHAYPNF 181 (758)
Q Consensus 104 L~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis--aImDLLLrLIs~De~~~p~~ 181 (758)
+..|..+|..+. +-..-.-.+++..|....+ +....+.. .+.+..|++.+..+ .+....++.+..--. ..
T Consensus 4 i~~L~~~L~~~~---~~~~~~a~~~L~~l~~~~~-~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~ 75 (252)
T 4hxt_A 4 VEKLVKLLTSTD---SETQKEAARDLAEIASGPA-SAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIAS---GP 75 (252)
T ss_dssp HHHHHHHTTCSC---HHHHHHHHHHHHHHHTSCH-HHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT---SC
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCc-HHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc---CC
Confidence 456777787654 3444445677777776655 33333333 36788888777644 333333333321110 01
Q ss_pred hhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHH
Q 036104 182 MDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHA 245 (758)
Q Consensus 182 ~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~m 245 (758)
......+.+.+.|+.|+.+|.. .+++++.+|+..|..|+... ......+.....+..|++.+
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l 137 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLL 137 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHH
Confidence 2445566788999999999984 57899999999999998643 23333344445555555543
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=80.64 E-value=17 Score=33.76 Aligned_cols=133 Identities=12% Similarity=0.075 Sum_probs=77.0
Q ss_pred HHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh--HHHHHHHHHhccCCCCCC
Q 036104 102 ELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT--SIMEVLVRLVGADDHAYP 179 (758)
Q Consensus 102 ~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis--aImDLLLrLIs~De~~~p 179 (758)
..+..|..+|..+ ++.+.-.-..++.+|....... ...+.. .+.+..|++.+..+ .+..--...+..--..
T Consensus 54 g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~-~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-- 126 (210)
T 4db6_A 54 GALPALVQLLSSP---NEQILQEALWALSNIASGGNEQ-IQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASG-- 126 (210)
T ss_dssp THHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHH-HHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--
T ss_pred CCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcHH-HHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC--
Confidence 4567777888765 3444445566666665443332 233333 35677777777654 2322222222211000
Q ss_pred ChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHH
Q 036104 180 NFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGH 244 (758)
Q Consensus 180 ~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~ 244 (758)
.....+-+.+.++|+.|+++|... +..++.+|+..|..|+...+ .....+.....+..|+..
T Consensus 127 -~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~i~~L~~l 188 (210)
T 4db6_A 127 -GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQL 188 (210)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHG
T ss_pred -CHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCc-HHHHHHHHCCCHHHHHHH
Confidence 123344556789999999999864 78999999999999987543 233344444455555443
No 4
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=78.49 E-value=6.9 Score=42.37 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=42.5
Q ss_pred hHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHH
Q 036104 183 DVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFG 243 (758)
Q Consensus 183 ~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~ 243 (758)
..++.+.+.++++.|+.+|... +..++..|+..|+.|+..+.......|....+|..|++
T Consensus 362 ~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~ 421 (528)
T 4b8j_A 362 DQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCD 421 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence 3455666779999999999755 78999999999999988754444444444444444444
No 5
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=75.20 E-value=29 Score=33.09 Aligned_cols=134 Identities=12% Similarity=0.072 Sum_probs=79.2
Q ss_pred HHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh--HHHHHHHHHhccCCCCCC
Q 036104 102 ELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT--SIMEVLVRLVGADDHAYP 179 (758)
Q Consensus 102 ~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis--aImDLLLrLIs~De~~~p 179 (758)
..+..|..+|..+. +.+.-.-..++..|...... ....+.. .+.+..|++.+..+ .+...-+..+..--..
T Consensus 54 g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~-~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-- 126 (252)
T 4db8_A 54 GALPALVQLLSSPN---EQILQEALWALSNIASGGNE-QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASG-- 126 (252)
T ss_dssp THHHHHHHGGGCSC---HHHHHHHHHHHHHHTTSCHH-HHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--
T ss_pred CcHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCHH-HHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--
Confidence 56778888887654 44444556666666554333 2233333 25677777777543 4444433333311110
Q ss_pred ChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHH
Q 036104 180 NFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHA 245 (758)
Q Consensus 180 ~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~m 245 (758)
.......+.+.+.|+.|+++|... ++.++.+|+..|..|+... ......+.....+..|+..+
T Consensus 127 -~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll 189 (252)
T 4db8_A 127 -GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLL 189 (252)
T ss_dssp -CHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHGG
T ss_pred -CchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHH
Confidence 122336677889999999999754 7889999999999988643 23333333444555555443
No 6
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=73.93 E-value=42 Score=31.10 Aligned_cols=151 Identities=11% Similarity=0.050 Sum_probs=83.9
Q ss_pred HHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh--HHHHHHHHHhccCCCCCCCh
Q 036104 104 MNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT--SIMEVLVRLVGADDHAYPNF 181 (758)
Q Consensus 104 L~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis--aImDLLLrLIs~De~~~p~~ 181 (758)
...|..+|.++. +.+--.-++.+..|...... ....+... +.+..|++.+..+ .+..--++.+..--. ..
T Consensus 14 ~~~l~~LL~s~~---~~v~~~a~~~L~~l~~~~~~-~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~---~~ 85 (210)
T 4db6_A 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNE-QIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIAS---GG 85 (210)
T ss_dssp HHHHHHHTTCSC---HHHHHHHHHHHHHHHTSCHH-HHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTT---SC
T ss_pred hHHHHHHhcCCC---HHHHHHHHHHHHHHHcCCHH-HHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhc---CC
Confidence 345666666543 33333445666666544433 33333332 6677777777543 444443433331100 01
Q ss_pred hhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHhcCCCCcccchhhhhh
Q 036104 182 MDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHALEDSRSKSSLVHSLSV 261 (758)
Q Consensus 182 ~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~~~~s~SsLVngIsI 261 (758)
....+-+.+.+.|+.|+.+|... ++.++.+|+..|..|+...+ ...+.+.....|..|+..+-.. ...+..+++..
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~a 161 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSP--NEQILQEALWA 161 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHH
Confidence 23345556788999999999765 68899999999999987443 2333444455666666654332 12333444444
Q ss_pred hhhcc
Q 036104 262 CISLL 266 (758)
Q Consensus 262 LIeLL 266 (758)
|-.|.
T Consensus 162 L~~l~ 166 (210)
T 4db6_A 162 LSNIA 166 (210)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 7
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=70.93 E-value=21 Score=38.68 Aligned_cols=132 Identities=11% Similarity=0.114 Sum_probs=77.1
Q ss_pred HHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhC--ChHHHH----HHHHHhccCC
Q 036104 102 ELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIG--ITSIME----VLVRLVGADD 175 (758)
Q Consensus 102 ~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHId--isaImD----LLLrLIs~De 175 (758)
.++..|..+|... ++.+.-.-+.++.+|.......+-.++ . .+++..|++.+. .+.+.. .|-.|.....
T Consensus 341 ~~l~~L~~lL~~~---~~~vr~~A~~aL~~l~~~~~~~~~~~~-~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 415 (530)
T 1wa5_B 341 GVLPALRLLLSSP---KENIKKEACWTISNITAGNTEQIQAVI-D-ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL 415 (530)
T ss_dssp THHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHHHHHH-H-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHH-H-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 5777888888765 344444445666666554333333333 2 355666665553 223333 3333332211
Q ss_pred CCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCC----------hHHHHHhcChhHHHHHHH
Q 036104 176 HAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAP----------SALATKLASPSFVARIFG 243 (758)
Q Consensus 176 ~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~P----------n~L~r~L~S~e~I~~Ll~ 243 (758)
+. ......+.+.++|+.|+.+|... ++.++.+|...|..|...++ ++....|.....+++|..
T Consensus 416 ~~----~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~ 488 (530)
T 1wa5_B 416 QR----PDIIRYLVSQGCIKPLCDLLEIA-DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 488 (530)
T ss_dssp TC----THHHHHHHHTTCHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred Cc----HHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHH
Confidence 10 13456667889999999999864 78899999999999876432 445555555555555544
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=68.44 E-value=12 Score=41.08 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=39.7
Q ss_pred HHHHhccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHh
Q 036104 167 LVRLVGADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITR 222 (758)
Q Consensus 167 LLrLIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsr 222 (758)
+-||++.++.+ | ++-+-+.++|++|+++|+.+.++++|..|+-.|..|+.
T Consensus 81 ~rklls~e~~p-p-----i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias 130 (510)
T 3ul1_B 81 ARKLLSREKQP-P-----IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS 130 (510)
T ss_dssp HHHHHTCSSCC-C-----HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCc-h-----HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 35677766542 2 44556789999999999998899999999999999864
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=68.41 E-value=26 Score=33.42 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh--HHHHHHHHHhccCCCCCCChhhHHHHhhhhhHHHHHHHhhCC
Q 036104 126 SKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT--SIMEVLVRLVGADDHAYPNFMDVMQWLADSNLLEMIVNKLSP 203 (758)
Q Consensus 126 sKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis--aImDLLLrLIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~p 203 (758)
++.+..++.. ..+....+.. .+.+..|++.+..+ .+..--++.+..--.. .......+.+.+.|+.|+.+|..
T Consensus 33 ~~~L~~~l~~-~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~ 107 (252)
T 4db8_A 33 TRKFSQILSD-GNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASG---GNEQIQAVIDAGALPALVQLLSS 107 (252)
T ss_dssp HHHHHHHHHH-HHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHcC-CCchHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHHcC
Confidence 4555555554 3333444443 36788888887653 3333333333211100 12334566678999999999987
Q ss_pred CCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHH
Q 036104 204 LCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHA 245 (758)
Q Consensus 204 s~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~m 245 (758)
.++.++.+|+..|..|+...++ -...+.....|..|++.+
T Consensus 108 -~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~lL 147 (252)
T 4db8_A 108 -PNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLL 147 (252)
T ss_dssp -SCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHGG
T ss_pred -CCHHHHHHHHHHHHHhhcCCch-HHHHHHHCCCHHHHHHHH
Confidence 4689999999999998764322 223444445555555544
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=67.62 E-value=15 Score=39.94 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh--HHHHHHHHHhccCCCCCCC
Q 036104 103 LMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT--SIMEVLVRLVGADDHAYPN 180 (758)
Q Consensus 103 LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis--aImDLLLrLIs~De~~~p~ 180 (758)
++..|..+|... ++.+.-.-.+++.+|........-.++. .+++..|++.+..+ .+..--+..|+.--. .
T Consensus 300 ~v~~Lv~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~---~ 371 (530)
T 1wa5_B 300 IPKRLVELLSHE---STLVQTPALRAVGNIVTGNDLQTQVVIN--AGVLPALRLLLSSPKENIKKEACWTISNITA---G 371 (530)
T ss_dssp CHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT---S
T ss_pred cHHHHHHHHCCC---ChhhHHHHHHHHHHHHcCCHHHHHHHHH--cchHHHHHHHHcCCCHHHHHHHHHHHHHHHc---C
Confidence 345555666532 2333333445555554433322222222 25666666666543 333222222221100 0
Q ss_pred hhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCCh--HHHHHhcChhHHHHHHHH
Q 036104 181 FMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPS--ALATKLASPSFVARIFGH 244 (758)
Q Consensus 181 ~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn--~L~r~L~S~e~I~~Ll~~ 244 (758)
....++-+.+.++++.|+..|.. .++.++..|+..|+.|+..+.. .....|.....+..|+..
T Consensus 372 ~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~l 436 (530)
T 1wa5_B 372 NTEQIQAVIDANLIPPLVKLLEV-AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDL 436 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHH
Confidence 12233445567899999999963 4778999999999999876533 344444444444444443
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=63.53 E-value=33 Score=36.96 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=56.4
Q ss_pred cHHHHHHHhhCCh--HHHHHHHHHhccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCCh
Q 036104 149 DVFRRLVDLIGIT--SIMEVLVRLVGADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPS 226 (758)
Q Consensus 149 ~iVd~LLkHIdis--aImDLLLrLIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn 226 (758)
+++..|++.+..+ .+..-.++.|+.--. ......+.+.+.++++.|+.+|...+++.++..|+..|..|++. ..
T Consensus 286 g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~ 361 (528)
T 4b8j_A 286 GVCPRLVELLLHPSPSVLIPALRTVGNIVT---GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NK 361 (528)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTT---SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CH
T ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHHHHc---CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CH
Confidence 4556666666433 333333333321110 01234455667899999999998777899999999999999874 33
Q ss_pred HHHHHhcChhHHHHHHHHHh
Q 036104 227 ALATKLASPSFVARIFGHAL 246 (758)
Q Consensus 227 ~L~r~L~S~e~I~~Ll~~mL 246 (758)
.....+.....+..|+..+-
T Consensus 362 ~~~~~~~~~~~i~~L~~lL~ 381 (528)
T 4b8j_A 362 DQIQAVINAGIIGPLVNLLQ 381 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHh
Confidence 33444444455555555443
No 12
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=62.28 E-value=23 Score=36.75 Aligned_cols=126 Identities=12% Similarity=0.190 Sum_probs=72.7
Q ss_pred chHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh--HHHHH
Q 036104 89 EIDVILKTLVEEEELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT--SIMEV 166 (758)
Q Consensus 89 di~~I~d~Lvene~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis--aImDL 166 (758)
+.+...+.+++. ..+..|+.+|..+. ++...---...+.+|...++...-.|+.. +.+..|++.+..+ .+.--
T Consensus 112 ~n~~~~~~vv~~-g~l~~Ll~LL~~~~--~~~v~~~A~~ALsnl~~~~~~~~~~~~~~--ggi~~L~~lL~~~d~~v~~~ 186 (296)
T 1xqr_A 112 NVAAIQEQVLGL-GALRKLLRLLDRDA--CDTVRVKALFAISCLVREQEAGLLQFLRL--DGFSVLMRAMQQQVQKLKVK 186 (296)
T ss_dssp TCHHHHHHHHHT-THHHHHHHHHHHCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHHHC-CCHHHHHHHHccCC--CHHHHHHHHHHHHHHHcCCcHHHHHHHHC--CCHHHHHHHHcCCCHHHHHH
Confidence 334444445543 45677777776432 23333334456666666555544455553 3555665555432 11111
Q ss_pred HHHHhcc-CCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcC
Q 036104 167 LVRLVGA-DDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNA 224 (758)
Q Consensus 167 LLrLIs~-De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~ 224 (758)
....|+. -.. ..+..+.+.+.+.|+.|+.+|... +..++..|+..|..|.+.+
T Consensus 187 A~~aLs~L~~~----~~~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 187 SAFLLQNLLVG----HPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHHH----CGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC----ChHHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHhCC
Confidence 1111110 000 124567888999999999999865 6789999999999998764
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=61.52 E-value=51 Score=34.05 Aligned_cols=120 Identities=14% Similarity=0.162 Sum_probs=73.4
Q ss_pred hhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCC--hHHHHHHHHHhccC
Q 036104 97 LVEEEELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGI--TSIMEVLVRLVGAD 174 (758)
Q Consensus 97 Lvene~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdi--saImDLLLrLIs~D 174 (758)
+++...++..|..+|..+. ++.+.-.-++++..+........-.++. .+++..|++.+.. +.+...-++.+..-
T Consensus 59 ~~~~~~~i~~L~~~L~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~lL~~~~~~vr~~a~~~L~~l 134 (450)
T 2jdq_A 59 VISTPGVVARFVEFLKRKE--NCTLQFESAWVLTNIASGNSLQTRIVIQ--AGAVPIFIELLSSEFEDVQEQAVWALGNI 134 (450)
T ss_dssp HHTSTTHHHHHHHHHTCTT--CHHHHHHHHHHHHHHHSSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHCCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHh--CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3344456777778887652 3444444566666666644433333332 4677777777754 34444333333211
Q ss_pred CCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhc
Q 036104 175 DHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRN 223 (758)
Q Consensus 175 e~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn 223 (758)
-... ....+.+.+.++++.|+.+|....+..++.+|+..|..|++.
T Consensus 135 ~~~~---~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 135 AGDS---TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HTTC---HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred ccCC---HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 0000 123445556789999999999778899999999999999875
No 14
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=60.73 E-value=30 Score=40.35 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=73.2
Q ss_pred HHHhCccHHHHHHHhhCChH------HHHHHHHHhccCCCCCCChhhHHH-HhhhhhHHHHHHHhhCCCCCHHHHHhHHH
Q 036104 143 YVQIHPDVFRRLVDLIGITS------IMEVLVRLVGADDHAYPNFMDVMQ-WLADSNLLEMIVNKLSPLCPPEVHANAAE 215 (758)
Q Consensus 143 FIk~~~~iVd~LLkHIdisa------ImDLLLrLIs~De~~~p~~~~Iie-WL~eq~LI~rLI~lL~ps~s~dih~NAae 215 (758)
|+++ ++-+..|+..++... .+-+|-.|+.... ..+-+ .|....=|++|++.|+... .-++..|.-
T Consensus 117 f~~~-~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~------~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneall 188 (651)
T 3grl_A 117 FIKQ-QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLG------PQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVL 188 (651)
T ss_dssp HHHS-THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSH------HHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHH
T ss_pred HHcC-CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCc------HHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHH
Confidence 4444 566778888776542 1223333332221 11222 3445678899999998664 557777888
Q ss_pred HHHHHHhcCChHHHHHhcChhHHHHHHHHHhcCCCCcccch--hhhhhhhhccCCCc
Q 036104 216 TLCAITRNAPSALATKLASPSFVARIFGHALEDSRSKSSLV--HSLSVCISLLDPKR 270 (758)
Q Consensus 216 ~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~~~~s~SsLV--ngIsILIeLLrknn 270 (758)
+|++|++.. ..+-.-++-+..+++||++|-.++..+.++| -|+.+|-.|++.|.
T Consensus 189 LL~~Lt~~n-~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 189 LLQALTRSN-GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCC-HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 899998843 2233333445788999999876543333444 47788889999873
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=60.49 E-value=40 Score=34.89 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=40.5
Q ss_pred HHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHH
Q 036104 185 MQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGH 244 (758)
Q Consensus 185 ieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~ 244 (758)
.+-+.+.++++.|+..|.. .+++++.+|+..|+.|++.+.....+.+.....+..|++.
T Consensus 311 ~~~~~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~l 369 (450)
T 2jdq_A 311 IQTVIDANIFPALISILQT-AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL 369 (450)
T ss_dssp HHHHHHTTHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHG
T ss_pred HHHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH
Confidence 3345567899999999974 3678999999999999876433444444444455555543
No 16
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=57.87 E-value=57 Score=38.10 Aligned_cols=125 Identities=17% Similarity=0.153 Sum_probs=92.5
Q ss_pred HHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh--HHH-HHHH
Q 036104 92 VILKTLVEEEELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT--SIM-EVLV 168 (758)
Q Consensus 92 ~I~d~Lvene~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis--aIm-DLLL 168 (758)
.+.+.++.+++-+..|.++|+.+. -..-=|=.+.+..|+..++..+.+.|...|.=+..|+.-++-+ .|- +-++
T Consensus 112 ~~~d~f~~~~~~i~~Ll~lL~~~d---f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall 188 (651)
T 3grl_A 112 QFTEIFIKQQENVTLLLSLLEEFD---FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVL 188 (651)
T ss_dssp HHHHHHHHSTHHHHHHHHHTTCCC---HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHhcCcc---HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence 367888999999999999998653 2222345689999999999999999999999999999999754 332 2333
Q ss_pred HHhccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCC---CCHHHHHhHHHHHHHHHhc
Q 036104 169 RLVGADDHAYPNFMDVMQWLADSNLLEMIVNKLSPL---CPPEVHANAAETLCAITRN 223 (758)
Q Consensus 169 rLIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps---~s~dih~NAae~LkaIsrn 223 (758)
-|+..-+. ..++-..+.-++-+++|++++..+ ....++.-+..+|..+.|.
T Consensus 189 LL~~Lt~~----n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 189 LLQALTRS----NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp HHHHHHTT----CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcC----CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence 44443332 256777778899999999999753 3456777777778888764
No 17
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=57.24 E-value=25 Score=38.57 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=40.2
Q ss_pred HHHHHhccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHh
Q 036104 166 VLVRLVGADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITR 222 (758)
Q Consensus 166 LLLrLIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsr 222 (758)
-+-|+++.+.. | .++-+.+.++|++|+.+|....++++|..|+-.|..|+.
T Consensus 99 ~~rklLs~~~~--~----~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~ 149 (529)
T 3tpo_A 99 AARKLLSREKQ--P----PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS 149 (529)
T ss_dssp HHHHHHTSSSC--C----CHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCC--c----hHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHc
Confidence 34566665543 2 145566889999999999999999999999999999865
No 18
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=49.10 E-value=51 Score=36.08 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=41.8
Q ss_pred hHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHH
Q 036104 183 DVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFG 243 (758)
Q Consensus 183 ~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~ 243 (758)
...+.+.+.++|+.|+..|.. .+.+++..|+-.|+.++..+.......|....+|..|++
T Consensus 368 ~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~ 427 (529)
T 3tpo_A 368 DQIQQVVNHGLVPFLVGVLSK-ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 427 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHH
Confidence 345566678999999999965 467899999999999887665544445544444444443
No 19
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=48.66 E-value=62 Score=33.51 Aligned_cols=151 Identities=13% Similarity=0.090 Sum_probs=91.9
Q ss_pred HHHHHh-hcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhC---ChHHHHHHHHHhccC-CCCC
Q 036104 104 MNLLFS-FLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIG---ITSIMEVLVRLVGAD-DHAY 178 (758)
Q Consensus 104 L~kL~S-FLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHId---isaImDLLLrLIs~D-e~~~ 178 (758)
+..|+. .|.++ ++-+--+=+.++.++....+..-- .+... +.+..|++.+. ...+..-.+..|+.- .. .
T Consensus 83 l~~Lv~~lL~s~---~~~vr~~Aa~~Lg~ia~~n~~~~~-~vv~~-g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~-~ 156 (296)
T 1xqr_A 83 MHLLVGRYLEAG---AAGLRWRAAQLIGTCSQNVAAIQE-QVLGL-GALRKLLRLLDRDACDTVRVKALFAISCLVRE-Q 156 (296)
T ss_dssp HHHHHHTTTTCS---SHHHHHHHHHHHHHHHTTCHHHHH-HHHHT-THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCCHHHHH-HHHHC-CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-C
Confidence 456677 77754 355555667888888765543222 33332 55666666664 234444444444422 11 1
Q ss_pred CChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHhcCCCCcccchhh
Q 036104 179 PNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHALEDSRSKSSLVHS 258 (758)
Q Consensus 179 p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~~~~s~SsLVng 258 (758)
....+-+.+.+.|+.|+.+|.. .+..++..|+-.|..|+.. .+...+.+....+|..|+..+-... ..+...+
T Consensus 157 ---~~~~~~~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d--~~v~~~a 229 (296)
T 1xqr_A 157 ---EAGLLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEH--SPFHEHV 229 (296)
T ss_dssp ---HHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCC--STHHHHH
T ss_pred ---cHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCC--hhHHHHH
Confidence 1223334456889999999975 4889999999999999875 3456667777788888887644331 2344455
Q ss_pred hhhhhhccC
Q 036104 259 LSVCISLLD 267 (758)
Q Consensus 259 IsILIeLLr 267 (758)
+..|-.|+.
T Consensus 230 l~aL~~l~~ 238 (296)
T 1xqr_A 230 LGALCSLVT 238 (296)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 555555554
No 20
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=46.94 E-value=1.3e+02 Score=34.78 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=38.6
Q ss_pred hhHHHHHHHhhCC-CCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHh
Q 036104 191 SNLLEMIVNKLSP-LCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHAL 246 (758)
Q Consensus 191 q~LI~rLI~lL~p-s~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL 246 (758)
..+++.|+..|+. .....+..||+..|..|.+.+|+.+.-.| ++++..++..+-
T Consensus 710 ~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l--~~~~~~~~~~l~ 764 (852)
T 4fdd_A 710 PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML--QQFIRPWCTSLR 764 (852)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccH--HHHHHHHHHHhc
Confidence 4788999998864 45668999999999998887766443222 456666666553
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=45.38 E-value=1.7e+02 Score=30.97 Aligned_cols=58 Identities=10% Similarity=0.045 Sum_probs=40.2
Q ss_pred HHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHH
Q 036104 186 QWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHA 245 (758)
Q Consensus 186 eWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~m 245 (758)
.-+.+.+.|+.|+++|....++.++..|+.+|..|++...+. ..+.....+..|+..+
T Consensus 349 ~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~--~~~~~~~~i~~L~~ll 406 (529)
T 1jdh_A 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH--APLREQGAIPRLVQLL 406 (529)
T ss_dssp HHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH--HHHHHTTHHHHHHHHH
T ss_pred HHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh--HHHHHcCCHHHHHHHH
Confidence 344567789999999998877899999999999987643222 3444445555555543
No 22
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=42.50 E-value=37 Score=37.15 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=44.0
Q ss_pred hHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHH
Q 036104 183 DVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFG 243 (758)
Q Consensus 183 ~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~ 243 (758)
...+.+.+.++|+.|+..|... +.+++..|+-.|+.++..+...-...|....+|..|++
T Consensus 349 ~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~ 408 (510)
T 3ul1_B 349 DQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH
Confidence 4456677889999999999754 67899999999999987765555555555555555544
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=42.26 E-value=2.3e+02 Score=31.56 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=41.1
Q ss_pred hhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHh
Q 036104 188 LADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHAL 246 (758)
Q Consensus 188 L~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL 246 (758)
+.+.+.++.|+++|....++.++..|+.+|..|++...+. ..+.....|..|+..+-
T Consensus 348 v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~--~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH--APLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH--HHHHHTTHHHHHHHHHH
T ss_pred HHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH--HHHHHcCCHHHHHHHHh
Confidence 4456789999999998877899999999999988753332 44445555665555443
No 24
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=39.41 E-value=3.9e+02 Score=28.86 Aligned_cols=125 Identities=17% Similarity=0.292 Sum_probs=75.8
Q ss_pred HHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhC-ccHHHHHHHhhCCh--HHHHHHH
Q 036104 92 VILKTLVEEEELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIH-PDVFRRLVDLIGIT--SIMEVLV 168 (758)
Q Consensus 92 ~I~d~Lvene~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~-~~iVd~LLkHIdis--aImDLLL 168 (758)
.+...++.++. +.++|.+++.+. =.+.+.-| .++..||.+...-+-+||..+ +.|+..+-+.|..+ ..---=+
T Consensus 155 ~la~~iL~~~~-f~~fF~yv~~~~--FdiasDAf-~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 155 PLAKIILWSEQ-FYDFFRYVEMST--FDIASDAF-ATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HHHHHHHHSGG-GGHHHHHTTCSS--HHHHHHHH-HHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHhccHH-HHHHHHHhcCCC--chHHHHHH-HHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 34444444442 346666666432 12333344 466778888777777888865 34555555544433 2222223
Q ss_pred HHhc---cCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcC
Q 036104 169 RLVG---ADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNA 224 (758)
Q Consensus 169 rLIs---~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~ 224 (758)
||++ +|.. |..-...|+.+.+-+.-+..+|... +.-+|-.|-.++|=.++|.
T Consensus 231 KLLgelLldr~---N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 231 KLLGELLLDRH---NFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHSGG---GHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhCch---HHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCC
Confidence 3333 2432 4456778888888888887888655 6668999999999888873
No 25
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=38.82 E-value=5.2e+02 Score=29.95 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=66.8
Q ss_pred HHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh--HH----HHHHH
Q 036104 95 KTLVEEEELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT--SI----MEVLV 168 (758)
Q Consensus 95 d~Lvene~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis--aI----mDLLL 168 (758)
..++..+..+..|..+|.... ++...-.-.+.+..|... ... ...+... +.+..|++.+..+ .+ +..|.
T Consensus 185 ~~i~~~~~~i~~Lv~~L~~~~--d~~vr~~Aa~aL~~Ls~~-~~~-~~~i~~~-g~I~~Lv~lL~~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 185 HAIMRSPQMVSAIVRTMQNTN--DVETARCTSGTLHNLSHH-REG-LLAIFKS-GGIPALVNMLGSPVDSVLFHAITTLH 259 (780)
T ss_dssp HHHTTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTS-HHH-HHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHcCCC--CHHHHHHHHHHHHHHhCC-chh-HHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 355667788888888886432 343433445555554332 222 2233332 6677777776543 22 22333
Q ss_pred HHhccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHh
Q 036104 169 RLVGADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITR 222 (758)
Q Consensus 169 rLIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsr 222 (758)
.|..... .....+.+.+.|+.|+++|.. .+..++..|+..|..++.
T Consensus 260 nLa~~~~-------~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 260 NLLLHQE-------GAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHST-------THHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCh-------hhHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhc
Confidence 3332211 233455578899999999976 456788888888887664
No 26
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=36.16 E-value=1.8e+02 Score=31.29 Aligned_cols=160 Identities=12% Similarity=0.091 Sum_probs=92.7
Q ss_pred hhHHHHhcCHHHHHHHHhhhccCCCCChHHhhhcccccceehhcccch--H--HHHHHhhcCHHHHHHHHhhcCCCCCCC
Q 036104 43 SRLINFLRDREQVEKLLRYIVEEAPADAESKQAFKFPFVACEIFTCEI--D--VILKTLVEEEELMNLLFSFLEPNRPHS 118 (758)
Q Consensus 43 ~KLIdFL~kpevLekLI~YI~~eppEd~e~k~~~Kyp~IAsEILSsdi--~--~I~d~Lvene~LL~kL~SFLd~~~plN 118 (758)
.+-++.|.++..+..|+..+..... .+.+.. -....+- ||... + .+....+.+...+..|..+|.+..
T Consensus 273 ~~~~~~l~~~~~l~~L~~lL~~~~~--~~~~e~--a~~aL~n-l~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~--- 344 (457)
T 1xm9_A 273 PKGSGWLYHSDAIRTYLNLMGKSKK--DATLEA--CAGALQN-LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN--- 344 (457)
T ss_dssp CCGGGGGGSHHHHHHHHHHHHHCCC--HHHHHH--HHHHHHH-HTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC---
T ss_pred chHHHHHhCcchHHHHHHHHhhcCC--HHHHHH--HHHHHHH-hccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC---
Confidence 3455667788888888888876531 111110 0001111 22211 1 233455655566778888887654
Q ss_pred hhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh------------HHHHHHHHHhccCCCCCCChhhHHH
Q 036104 119 ALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT------------SIMEVLVRLVGADDHAYPNFMDVMQ 186 (758)
Q Consensus 119 plLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis------------aImDLLLrLIs~De~~~p~~~~Iie 186 (758)
.-.----+..+.+|-. ..+....|.. ..+..|++.+..+ ++...|-.|+..+ .....
T Consensus 345 ~~v~~~A~~aL~nls~--~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~-------~~~~~ 413 (457)
T 1xm9_A 345 SDVVRSGASLLSNMSR--HPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ-------PQLAK 413 (457)
T ss_dssp HHHHHHHHHHHHHHHT--SGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC-------THHHH
T ss_pred HhHHHHHHHHHHHHhc--CHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC-------HHHHH
Confidence 1111112234444432 2344444443 4677788877764 4445555555433 13456
Q ss_pred HhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHH
Q 036104 187 WLADSNLLEMIVNKLSPLCPPEVHANAAETLCAIT 221 (758)
Q Consensus 187 WL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIs 221 (758)
.+.+.+.|++|++++...++..+...|+.+|..+.
T Consensus 414 ~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 414 QYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 77889999999999988788899999999987653
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=35.83 E-value=2.1e+02 Score=33.24 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHH
Q 036104 189 ADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHA 245 (758)
Q Consensus 189 ~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~m 245 (758)
.+.+.++.|+++|.....+.++..|+..|+.|++...+ ...+.....|..|+..+
T Consensus 485 ~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~--~~~i~~~g~i~~Lv~lL 539 (780)
T 2z6g_A 485 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN--HAPLREQGAIPRLVQLL 539 (780)
T ss_dssp HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH--HHHHHHTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH--HHHHHHCCCHHHHHHHH
Confidence 45678999999999888889999999999999864222 13344444555555543
No 28
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=30.67 E-value=1.2e+02 Score=28.64 Aligned_cols=55 Identities=7% Similarity=0.038 Sum_probs=45.9
Q ss_pred hHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHhc
Q 036104 192 NLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHALE 247 (758)
Q Consensus 192 ~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL~ 247 (758)
..+..|..+|. +.++.+|.-|-.+|-+++.|+..++-.++.+.++++.|++.+-.
T Consensus 48 ~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~ 102 (149)
T 3g2s_A 48 LATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSP 102 (149)
T ss_dssp HHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcc
Confidence 34556666776 56788899998999999999999999999999999999887754
No 29
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=30.42 E-value=4.2e+02 Score=29.16 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=31.6
Q ss_pred HHHHhhhhhHHHHHHHhhCC----------CCCHHHHHhHHHHHHHHHhcC
Q 036104 184 VMQWLADSNLLEMIVNKLSP----------LCPPEVHANAAETLCAITRNA 224 (758)
Q Consensus 184 IieWL~eq~LI~rLI~lL~p----------s~s~dih~NAae~LkaIsrn~ 224 (758)
.-+.+.+.+.|+-|+.+|.. ..+..++.+|+-.|..|++..
T Consensus 181 ~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~ 231 (458)
T 3nmz_A 181 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD 231 (458)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC
Confidence 44566778999999999942 234678999999999998753
No 30
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=30.14 E-value=1.8e+02 Score=34.80 Aligned_cols=79 Identities=11% Similarity=0.204 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhccCCCCCC-----------C-hhhHHHHhhh-hhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChH
Q 036104 161 TSIMEVLVRLVGADDHAYP-----------N-FMDVMQWLAD-SNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSA 227 (758)
Q Consensus 161 saImDLLLrLIs~De~~~p-----------~-~~~IieWL~e-q~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~ 227 (758)
...+..|++|+..++.... . .....+-+-+ ++.|+.|+.+|.. .+.+++..|+..|..|+..+ ..
T Consensus 664 ~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-~d~~vq~~A~~aL~NL~~~s-~e 741 (810)
T 3now_A 664 NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSPAVQHRGIVIILNMINAG-EE 741 (810)
T ss_dssp SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHTTC-HH
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHhCC-HH
Confidence 3456677777766432100 0 0122333434 7888888888874 67888888888888887633 33
Q ss_pred HHHHhcChhHHHHH
Q 036104 228 LATKLASPSFVARI 241 (758)
Q Consensus 228 L~r~L~S~e~I~~L 241 (758)
..+++....++..|
T Consensus 742 ~~~~l~e~G~i~~L 755 (810)
T 3now_A 742 IAKKLFETDIMELL 755 (810)
T ss_dssp HHHHHHTSTHHHHH
T ss_pred HHHHHHHCCCHHHH
Confidence 44455444444444
No 31
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=29.99 E-value=1.9e+02 Score=30.52 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhc
Q 036104 189 ADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRN 223 (758)
Q Consensus 189 ~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn 223 (758)
...+.|+.|+.+|. +.+.+++.+|+-.|..|+..
T Consensus 124 ~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~ 157 (354)
T 3nmw_A 124 SMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWR 157 (354)
T ss_dssp HCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTT
T ss_pred HcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhcc
Confidence 35788999999997 46788999999999998753
No 32
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=29.42 E-value=2.1e+02 Score=28.34 Aligned_cols=104 Identities=11% Similarity=0.201 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHhcCc---hhHHHHHHhCccHHHHHHHhh------C-ChHHHHHHHHHhccCCCCCCChhhHHHHhhh--
Q 036104 123 GYFSKVVVCLMLRKT---VPLMNYVQIHPDVFRRLVDLI------G-ITSIMEVLVRLVGADDHAYPNFMDVMQWLAD-- 190 (758)
Q Consensus 123 gYFsKIv~~LL~rkt---~eml~FIk~~~~iVd~LLkHI------d-isaImDLLLrLIs~De~~~p~~~~IieWL~e-- 190 (758)
.|...++-.||.+-. ..+-+.. ...++.++.++ . ...+|+-|+..+....+ +.+.+.+.||..
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa---~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~--~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAI---RKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTP--QIRMECTQLFNASM 174 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHH---HHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHH
Confidence 455566666665522 2232222 24566777777 4 56777777776655432 234455555421
Q ss_pred ---------------hhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhc-C---ChHHHHHh
Q 036104 191 ---------------SNLLEMIVNKLSPLCPPEVHANAAETLCAITRN-A---PSALATKL 232 (758)
Q Consensus 191 ---------------q~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn-~---Pn~L~r~L 232 (758)
..+|+.|...|... ++++...|.+.|.+|.+. | -.|++..|
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 35677777777544 777889999999998764 3 34555554
No 33
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=27.61 E-value=58 Score=25.18 Aligned_cols=15 Identities=40% Similarity=0.955 Sum_probs=12.9
Q ss_pred CCCCcccCCCCCCCC
Q 036104 620 SLNPFIDHDISDVNP 634 (758)
Q Consensus 620 ~~~~~~~~~~~~~~~ 634 (758)
..|||.|++-++++|
T Consensus 16 atNPFLde~l~dvqP 30 (45)
T 2jxc_B 16 ATNPFLNETLQDVQP 30 (45)
T ss_dssp SSCSSSSTTTSCCCC
T ss_pred cCCcchhhhHHhCCC
Confidence 359999999888887
No 34
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=27.53 E-value=2.1e+02 Score=28.51 Aligned_cols=120 Identities=13% Similarity=0.174 Sum_probs=69.4
Q ss_pred hhhhhHHHHHHHHHhcCchhHHHHHHhCcc---HHHHHH--------HhhCChHHHHHHHHHhccC--CCCCCChhhHHH
Q 036104 120 LLAGYFSKVVVCLMLRKTVPLMNYVQIHPD---VFRRLV--------DLIGITSIMEVLVRLVGAD--DHAYPNFMDVMQ 186 (758)
Q Consensus 120 lLAgYFsKIv~~LL~rkt~eml~FIk~~~~---iVd~LL--------kHIdisaImDLLLrLIs~D--e~~~p~~~~Iie 186 (758)
-+--||-||.+.++.......++=|+..|. ++..|+ .++....+..-+++++.+= .+. -.+--
T Consensus 8 Elq~yf~~It~a~~~~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~----l~lep 83 (196)
T 4atg_A 8 ELQLYFDKILSMIKSDMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKH----VFIDP 83 (196)
T ss_dssp HHHHHHHHHHHHHTSTTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTT----CCCGG
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC----CChHH
Confidence 344588888888887555666666666543 333333 4444555555555555421 110 01111
Q ss_pred HhhhhhHHHHHHHhh-CCCCCH-HHHHhHHHHHHHHHhc---CChHHHHHhcChhHHHHHHHHHhcCCC
Q 036104 187 WLADSNLLEMIVNKL-SPLCPP-EVHANAAETLCAITRN---APSALATKLASPSFVARIFGHALEDSR 250 (758)
Q Consensus 187 WL~eq~LI~rLI~lL-~ps~s~-dih~NAae~LkaIsrn---~Pn~L~r~L~S~e~I~~Ll~~mL~~~~ 250 (758)
+| +.|++-++..+ ..+-.+ ..-.-||.+|..|++. ..+.|. +..++.|.+..++..+
T Consensus 84 Yl--H~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~-----~RI~~tl~k~l~dp~~ 145 (196)
T 4atg_A 84 YL--HQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLA-----PRVLKTLKGVWMDPNR 145 (196)
T ss_dssp GH--HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHH-----HHHHHHHHHHHTCTTS
T ss_pred HH--HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHH-----HHHHHHHHHHHcCCCC
Confidence 22 46888888754 433333 7888899999999875 222332 6777778777776543
No 35
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=26.63 E-value=1.4e+02 Score=28.32 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=46.1
Q ss_pred hHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHH-HHHHHhc
Q 036104 192 NLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVAR-IFGHALE 247 (758)
Q Consensus 192 ~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~-Ll~~mL~ 247 (758)
..+..|.++|..+.++.+|-.|-.+|-+++.|+..++-+++++.++++. |++.+..
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~ 109 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILP 109 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHST
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3456666778766778888999999999999998999999999999999 6666543
No 36
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=25.90 E-value=3.6e+02 Score=28.85 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=44.6
Q ss_pred HHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHh
Q 036104 184 VMQWLADSNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHAL 246 (758)
Q Consensus 184 IieWL~eq~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL 246 (758)
...-+.+.+.|+.|+++|..+.+.+++.+|+-.|..|+.... .-..+.. ..|..|++.+.
T Consensus 78 ~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~--~~~~i~~-g~i~~Lv~ll~ 137 (457)
T 1xm9_A 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE--LKEELIA-DALPVLADRVI 137 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS--THHHHHH-HHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH--hHHHHHh-ccHHHHHHHHh
Confidence 344556789999999999978889999999999999987622 2223444 66777776663
No 37
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=24.79 E-value=9e+02 Score=28.77 Aligned_cols=133 Identities=11% Similarity=0.042 Sum_probs=82.4
Q ss_pred eehhcc--cchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCc-h-------hHH----------
Q 036104 82 ACEIFT--CEIDVILKTLVEEEELMNLLFSFLEPNRPHSALLAGYFSKVVVCLMLRKT-V-------PLM---------- 141 (758)
Q Consensus 82 AsEILS--sdi~~I~d~Lvene~LL~kL~SFLd~~~plNplLAgYFsKIv~~LL~rkt-~-------eml---------- 141 (758)
|+|-|+ +.-+..-..++.+..++..|+.+|... ++.+.-.-.+++.+|-.-.. . ++-
T Consensus 399 AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~---d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~ 475 (810)
T 3now_A 399 AADGLAYLTLDAECKEKLIEDKASIHALMDLARGG---NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE 475 (810)
T ss_dssp HHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCS
T ss_pred HHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC---ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccc
Confidence 455544 345667778888999999999999864 34454456788888876321 0 111
Q ss_pred -------------HHHHhCccHHHHHHHhhCC--hHHHHHHHHHhccCCCCCCChhhHHHHhhhhhHHHHHHHhhCCCCC
Q 036104 142 -------------NYVQIHPDVFRRLVDLIGI--TSIMEVLVRLVGADDHAYPNFMDVMQWLADSNLLEMIVNKLSPLCP 206 (758)
Q Consensus 142 -------------~FIk~~~~iVd~LLkHIdi--saImDLLLrLIs~De~~~p~~~~IieWL~eq~LI~rLI~lL~ps~s 206 (758)
..|-.. +.+..|+..+.. +.+.+-..+.|.---.. ......+.+++.|+-|+.+|... +
T Consensus 476 ~~ld~~~~v~~r~~~Vvea-GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d----~~~r~~Vv~~Gaip~Lv~LL~s~-~ 549 (810)
T 3now_A 476 HELDDVDFINKRITVLANE-GITTALCALAKTESHNSQELIARVLNAVCGL----KELRGKVVQEGGVKALLRMALEG-T 549 (810)
T ss_dssp SCHHHHHHHHHHHHHHHHT-THHHHHHHHHTCCCHHHHHHHHHHHHHHHTS----HHHHHHHHHTTHHHHHHHHHHSS-C
T ss_pred cccccHHHHHHHHHHHHHC-cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----HHHHHHHHHCCCHHHHHHHHccC-C
Confidence 122222 455555555543 34444333333311111 23456777899999999999754 4
Q ss_pred HHHHHhHHHHHHHHHhc
Q 036104 207 PEVHANAAETLCAITRN 223 (758)
Q Consensus 207 ~dih~NAae~LkaIsrn 223 (758)
...+.+|+..|..|+..
T Consensus 550 ~~~k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 550 EKGKRHATQALARIGIT 566 (810)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 67899999999988764
No 38
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=23.38 E-value=1.5e+02 Score=27.91 Aligned_cols=54 Identities=9% Similarity=0.045 Sum_probs=44.5
Q ss_pred hHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHh
Q 036104 192 NLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHAL 246 (758)
Q Consensus 192 ~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL 246 (758)
..+..|..+|. +.++.+|.-|-.+|-+++.|+..++-+++.+.++++.|.+.+-
T Consensus 38 ~a~rai~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~ 91 (148)
T 1mhq_A 38 HAPWLLAHKIQ-SPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLS 91 (148)
T ss_dssp HHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTC
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHc
Confidence 34555666675 5678899999999999999998999999999999999877554
No 39
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=22.28 E-value=2.1e+02 Score=27.29 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=43.9
Q ss_pred hHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHHh
Q 036104 192 NLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHAL 246 (758)
Q Consensus 192 ~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~mL 246 (758)
..+..|.++|.. .++.+|..|-.+|-+++.|+..++-.++.+.++++.|.+.+-
T Consensus 52 eA~ral~krl~~-~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~ 105 (163)
T 1x5b_A 52 DCLKAIMKRVNH-KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIK 105 (163)
T ss_dssp HHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHc
Confidence 344556666764 467788889999999999998999999999999999988663
No 40
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=21.39 E-value=5.2e+02 Score=27.82 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=61.1
Q ss_pred hhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh--H----HHHHHHHHhccCCCCCCChhhHHHHhh----
Q 036104 120 LLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT--S----IMEVLVRLVGADDHAYPNFMDVMQWLA---- 189 (758)
Q Consensus 120 lLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis--a----ImDLLLrLIs~De~~~p~~~~IieWL~---- 189 (758)
-.-.|..+.+..||.. ..- |+=+.+++.+|.++...+... . -..+|+.++...+.- ..-+.+=..
T Consensus 175 N~q~Y~L~AL~~LM~~-v~G-m~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~---~~lv~~av~~v~~ 249 (339)
T 3dad_A 175 NYQSYILRALGQLMLF-VDG-MLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENN---APLFIRAVNSVAS 249 (339)
T ss_dssp HHHHHHHHHHHHHTTS-HHH-HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-ccc-ccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCccc---chHHHHHHHHhhh
Confidence 3445777888887774 222 223344788888888777632 1 345566665555321 111111111
Q ss_pred h--hhHHHHHHHhhC--CCCCHHHHHhHHHHHHHHHhcCCh
Q 036104 190 D--SNLLEMIVNKLS--PLCPPEVHANAAETLCAITRNAPS 226 (758)
Q Consensus 190 e--q~LI~rLI~lL~--ps~s~dih~NAae~LkaIsrn~Pn 226 (758)
+ ....+.|+..|. ...+.+++.||--+|.++.+.+|+
T Consensus 250 ~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 250 TTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp HHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 1 224678999997 357899999998888777766665
No 41
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=21.22 E-value=6.7e+02 Score=26.86 Aligned_cols=109 Identities=9% Similarity=0.010 Sum_probs=72.8
Q ss_pred hhhhhhHHHHHHHHHhcCchhHHHHHHhCccHHHHHHHhhCCh--H----HHHHHHHHhccCCCCCCChhhHHHHhhh--
Q 036104 119 ALLAGYFSKVVVCLMLRKTVPLMNYVQIHPDVFRRLVDLIGIT--S----IMEVLVRLVGADDHAYPNFMDVMQWLAD-- 190 (758)
Q Consensus 119 plLAgYFsKIv~~LL~rkt~eml~FIk~~~~iVd~LLkHIdis--a----ImDLLLrLIs~De~~~p~~~~IieWL~e-- 190 (758)
...-.+..|++.+||..+. -++++.+++..+..+...++.+ . +.++|.-+....++. .++.-+++-+..
T Consensus 134 ~~~q~~~l~CLkalmN~~~--G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~-gG~~~VL~Al~~~~ 210 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKF--GIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPE-DMNERVLEAMTERA 210 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHH--HHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSST-THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchh--hHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcC-CcHHHHHHHHHHHH
Confidence 3455678899999987653 4788889999999999999866 3 445554444444321 114456655543
Q ss_pred ----hhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHH
Q 036104 191 ----SNLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALAT 230 (758)
Q Consensus 191 ----q~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r 230 (758)
..-.+.|++.|....+.+...++-.|+..|+..+++.=.|
T Consensus 211 ~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R 254 (383)
T 3eg5_B 211 EMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR 254 (383)
T ss_dssp HHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 2234568888887778888888888888887766554333
No 42
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=20.98 E-value=2.4e+02 Score=26.08 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=43.1
Q ss_pred hHHHHHHHhhCCCCCHHHHHhHHHHHHHHHhcCChHHHHHhcChhHHHHHHHHH
Q 036104 192 NLLEMIVNKLSPLCPPEVHANAAETLCAITRNAPSALATKLASPSFVARIFGHA 245 (758)
Q Consensus 192 ~LI~rLI~lL~ps~s~dih~NAae~LkaIsrn~Pn~L~r~L~S~e~I~~Ll~~m 245 (758)
..+..|.++|.. .++.+|..|-.+|-.++.|+..++-.++.+.++++.|.+.+
T Consensus 42 ~a~rai~Krl~~-~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~ 94 (140)
T 3ldz_A 42 DCLRSIMRRVNH-KDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVL 94 (140)
T ss_dssp HHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHh
Confidence 344555566764 46778888988998999999999999999999999988765
Done!