BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036105
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 95/234 (40%), Gaps = 50/234 (21%)
Query: 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMC---GPHV-------GVE 56
HVV++PYP QGHINPL + AK L +G T T Y K + GP E
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFE 69
Query: 57 PISDGFD--EGGYAQAKN-----EDLFLNF------------------PVNCVVYDSFLP 91
I DG EG +++ + + NF PV C+V D +
Sbjct: 70 SIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMS 129
Query: 92 WALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGWLT----LPVK---------LEDTPLS 138
+ + A+E+ L +F++SA C++ MH +P K LE
Sbjct: 130 FTIQAAEEFELPNVLYFSSSA--CSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDW 187
Query: 139 IPGLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEV 192
IPGL + D+ F++ L + ++K I NTF ELE +V
Sbjct: 188 IPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 80 PVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGWLTLPVK----LEDT 135
PV+C+V D+F+ +A D+A E G+ F+T + + + V ED
Sbjct: 112 PVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDE 171
Query: 136 PLS-IPGLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELE 189
L+ IPG+ + F DL + F + M L KA +F N+F+EL+
Sbjct: 172 LLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELD 226
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 64/236 (27%)
Query: 1 MNEDRR-HVVLLPYPSQGHINPLLQFAKRLA-----------------SKGVKATLATTH 42
M E + HV ++P P GH+ PL++FAKRL SK + L +
Sbjct: 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLP 60
Query: 43 YTAKSMCGPHVGVEPIS------------------------DGFDEGGYAQAKNEDLFLN 78
+ S+ P V + +S D F EGG
Sbjct: 61 SSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGG-----------R 109
Query: 79 FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGWLTLPVKLED--TP 136
P VV D F A DVA E+ + F+ +A V + F + T+ + + P
Sbjct: 110 LPTALVV-DLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEP 168
Query: 137 LSIPG---LPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELE 189
L +PG + +F+D P + ++Y +L +Y +A+ I NTF ELE
Sbjct: 169 LMLPGCVPVAGKDFLD-PAQDRKDDAY-KWLLHNTKRYK---EAEGILVNTFFELE 219
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 424
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATT 41
RH+ P GH+NP L + L ++G + + A T
Sbjct: 13 RHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAIT 48
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 40/184 (21%)
Query: 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLAT--------THYTAKSMCGPHVGVEPI 58
HV +L +P H PLL K++A++ K T + T ++ + P++ +
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNV 74
Query: 59 SDGFDEGGYAQAKN--EDLFL-------NFP-------------VNCVVYDSFLPWALDV 96
DG + GY + N E +FL NF + C+V D+F + D+
Sbjct: 75 HDGLPK-GYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADL 133
Query: 97 AKEYG-----LYGAAFFTNSATVCNIFCRMHHGWLTL-PVKLEDTPLSIPGLPSLNFIDL 150
A+E L+ A + V R G + VK D +PG P L DL
Sbjct: 134 AEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDV---LPGFPELKASDL 190
Query: 151 PTFV 154
P V
Sbjct: 191 PEGV 194
>pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
Subunit Complexed With Adpnp
pdb|1S16|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
Subunit Complexed With Adpnp
Length = 390
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 52 HVGVEPISDGFDEGGYAQAKNEDLFLNFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNS 111
H+G E I + DE AK D+ L+ + V D +D+ E G+
Sbjct: 34 HLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVEL---- 89
Query: 112 ATVCNIFCRMHHG 124
I CR+H G
Sbjct: 90 -----ILCRLHAG 97
>pdb|4HZ0|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HZ0|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 213
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 52 HVGVEPISDGFDEGGYAQAKNEDLFLNFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNS 111
H+G E I + DE AK D+ L+ + V D +D+ E G+
Sbjct: 23 HLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVEL---- 78
Query: 112 ATVCNIFCRMHHG 124
I CR+H G
Sbjct: 79 -----ILCRLHAG 86
>pdb|3FV5|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed
With Inhibitor
pdb|3FV5|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed
With Inhibitor
Length = 201
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 52 HVGVEPISDGFDEGGYAQAKNEDLFLNFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNS 111
H+G E I + DE AK D+ L+ + V D +D+ E G+
Sbjct: 20 HLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVEL---- 75
Query: 112 ATVCNIFCRMHHG 124
I CR+H G
Sbjct: 76 -----ILCRLHAG 83
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLA 39
H+ + + GH+NP L+ + L ++G + T A
Sbjct: 9 HIAMFSIAAHGHVNPSLEVIRELVARGHRVTYA 41
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 5 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATT 41
+RH++ GH+ P L LA +G + T TT
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTT 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,493,968
Number of Sequences: 62578
Number of extensions: 267805
Number of successful extensions: 462
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 11
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)