Query 036105
Match_columns 198
No_of_seqs 193 out of 1440
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 09:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02555 limonoid glucosyltran 100.0 2.1E-40 4.6E-45 290.3 20.4 196 1-197 1-234 (480)
2 PLN02173 UDP-glucosyl transfer 100.0 1.5E-40 3.3E-45 289.1 19.4 190 1-197 1-214 (449)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.6E-38 3.5E-43 278.8 18.1 193 4-197 8-235 (477)
4 PLN02152 indole-3-acetate beta 100.0 9.3E-38 2E-42 272.1 18.6 186 4-197 2-217 (455)
5 PLN02992 coniferyl-alcohol glu 100.0 6.8E-38 1.5E-42 274.2 17.6 195 1-197 1-221 (481)
6 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.1E-37 2.5E-42 271.7 18.9 191 4-197 6-224 (451)
7 PLN02562 UDP-glycosyltransfera 100.0 2.1E-37 4.5E-42 270.3 18.5 194 4-197 5-226 (448)
8 PLN00164 glucosyltransferase; 100.0 6.8E-37 1.5E-41 268.9 18.8 192 4-197 2-227 (480)
9 PLN02534 UDP-glycosyltransfera 100.0 8E-37 1.7E-41 268.3 17.9 189 4-197 7-236 (491)
10 PLN02670 transferase, transfer 100.0 5.9E-37 1.3E-41 268.0 16.3 191 4-197 5-234 (472)
11 PLN03004 UDP-glycosyltransfera 100.0 4.3E-36 9.3E-41 261.4 18.1 192 4-197 2-229 (451)
12 PLN02210 UDP-glucosyl transfer 100.0 7.5E-36 1.6E-40 260.9 19.2 193 3-197 6-220 (456)
13 PLN03015 UDP-glucosyl transfer 100.0 1.6E-35 3.5E-40 258.3 18.5 191 4-197 2-225 (470)
14 PLN02764 glycosyltransferase f 100.0 2.3E-35 5.1E-40 256.4 18.0 185 1-197 1-220 (453)
15 PLN02554 UDP-glycosyltransfera 100.0 4.1E-35 8.9E-40 258.0 18.6 189 5-197 2-231 (481)
16 PLN02448 UDP-glycosyltransfera 100.0 2.5E-34 5.3E-39 251.9 18.7 191 4-197 9-229 (459)
17 PLN02207 UDP-glycosyltransfera 100.0 3.7E-34 8E-39 250.1 18.7 190 4-197 2-232 (468)
18 PLN02167 UDP-glycosyltransfera 100.0 3.2E-34 7E-39 252.0 17.3 190 4-197 2-236 (475)
19 PLN02208 glycosyltransferase f 100.0 5.2E-34 1.1E-38 248.2 17.5 179 3-197 2-214 (442)
20 PLN00414 glycosyltransferase f 100.0 4E-34 8.7E-39 249.2 16.2 178 1-197 1-213 (446)
21 PLN03007 UDP-glucosyltransfera 100.0 1.8E-33 4E-38 247.7 18.9 192 1-197 1-238 (482)
22 cd03784 GT1_Gtf_like This fami 99.5 1.5E-14 3.3E-19 124.3 5.9 107 6-112 1-136 (401)
23 TIGR01426 MGT glycosyltransfer 99.5 1.3E-13 2.9E-18 118.5 7.3 100 11-110 1-122 (392)
24 KOG1192 UDP-glucuronosyl and U 99.3 1.5E-13 3.3E-18 121.3 -1.9 119 5-124 5-159 (496)
25 PF03033 Glyco_transf_28: Glyc 99.2 7.2E-12 1.6E-16 92.4 1.1 103 8-111 1-131 (139)
26 PF00201 UDPGT: UDP-glucoronos 98.5 8.7E-09 1.9E-13 91.3 -1.9 54 7-62 2-58 (500)
27 PHA03392 egt ecdysteroid UDP-g 98.1 1.3E-05 2.8E-10 71.7 9.1 107 5-111 20-168 (507)
28 PF13528 Glyco_trans_1_3: Glyc 97.9 8E-05 1.7E-09 62.0 9.1 101 7-111 2-124 (318)
29 COG1819 Glycosyl transferases, 97.8 1.5E-05 3.2E-10 69.4 3.5 55 5-59 1-55 (406)
30 TIGR00661 MJ1255 conserved hyp 97.8 0.00011 2.5E-09 61.6 8.6 99 10-110 5-122 (321)
31 PRK12446 undecaprenyldiphospho 97.3 0.0023 5E-08 54.6 9.7 105 7-111 3-124 (352)
32 cd03785 GT1_MurG MurG is an N- 96.5 0.019 4.1E-07 48.1 9.0 101 7-107 1-118 (350)
33 COG0707 MurG UDP-N-acetylgluco 96.5 0.034 7.3E-07 47.7 10.2 107 7-113 2-126 (357)
34 PRK00726 murG undecaprenyldiph 96.4 0.03 6.4E-07 47.3 9.3 102 6-107 2-120 (357)
35 TIGR01133 murG undecaprenyldip 96.0 0.069 1.5E-06 44.6 9.8 101 7-107 2-119 (348)
36 TIGR03590 PseG pseudaminic aci 95.9 0.041 8.9E-07 45.4 7.6 92 14-107 12-109 (279)
37 PF13579 Glyco_trans_4_4: Glyc 95.8 0.018 3.8E-07 41.9 4.7 87 22-108 7-103 (160)
38 COG4671 Predicted glycosyl tra 95.2 0.068 1.5E-06 45.5 6.7 88 5-92 9-118 (400)
39 cd03814 GT1_like_2 This family 94.8 0.32 7E-06 40.0 9.8 94 16-109 14-115 (364)
40 TIGR00215 lpxB lipid-A-disacch 94.8 0.067 1.4E-06 46.2 5.8 99 4-107 4-119 (385)
41 cd03818 GT1_ExpC_like This fam 94.0 0.63 1.4E-05 39.9 10.1 86 21-108 12-116 (396)
42 cd03800 GT1_Sucrose_synthase T 93.4 0.39 8.5E-06 40.5 7.7 92 16-107 21-130 (398)
43 cd03808 GT1_cap1E_like This fa 92.9 0.94 2E-05 36.8 9.0 101 8-108 2-110 (359)
44 PLN02871 UDP-sulfoquinovose:DA 92.7 0.9 2E-05 40.0 9.1 103 4-107 57-174 (465)
45 PRK00025 lpxB lipid-A-disaccha 92.4 0.27 5.8E-06 41.8 5.2 101 6-108 2-116 (380)
46 cd03794 GT1_wbuB_like This fam 92.1 1.6 3.4E-05 35.8 9.4 93 16-108 14-131 (394)
47 cd03817 GT1_UGDG_like This fam 90.9 2 4.4E-05 35.1 8.9 97 12-108 10-115 (374)
48 smart00851 MGS MGS-like domain 90.7 1.2 2.6E-05 30.1 6.1 78 22-105 2-89 (90)
49 PRK10307 putative glycosyl tra 90.6 2.6 5.6E-05 36.2 9.6 85 22-106 21-136 (412)
50 cd03795 GT1_like_4 This family 89.3 4.7 0.0001 33.2 9.8 97 15-111 13-116 (357)
51 cd03816 GT1_ALG1_like This fam 89.0 1.4 2.9E-05 38.4 6.6 56 4-59 2-60 (415)
52 cd03796 GT1_PIG-A_like This fa 86.8 6 0.00013 33.9 9.2 92 16-107 14-119 (398)
53 cd01424 MGS_CPS_II Methylglyox 86.5 3.4 7.3E-05 28.9 6.3 82 18-106 11-100 (110)
54 PF13477 Glyco_trans_4_2: Glyc 86.2 1.6 3.4E-05 31.3 4.6 94 8-105 2-103 (139)
55 cd03819 GT1_WavL_like This fam 86.2 3.2 7E-05 34.2 7.0 93 17-109 11-109 (355)
56 cd03820 GT1_amsD_like This fam 85.4 12 0.00026 30.0 9.9 92 16-107 13-111 (348)
57 COG2099 CobK Precorrin-6x redu 85.1 4.2 9E-05 33.2 6.8 79 22-108 14-100 (257)
58 PRK13609 diacylglycerol glucos 84.7 1.7 3.7E-05 37.0 4.7 39 4-42 3-42 (380)
59 COG3980 spsG Spore coat polysa 84.2 1.2 2.5E-05 37.1 3.3 34 13-46 12-45 (318)
60 cd03812 GT1_CapH_like This fam 83.5 4.1 8.8E-05 33.7 6.5 94 14-108 10-110 (358)
61 TIGR00715 precor6x_red precorr 83.5 6.8 0.00015 32.0 7.6 77 22-107 12-98 (256)
62 PLN00142 sucrose synthase 83.1 6.1 0.00013 37.7 7.9 30 79-108 407-438 (815)
63 cd03811 GT1_WabH_like This fam 83.1 12 0.00025 30.1 8.9 95 14-109 10-112 (353)
64 PRK08057 cobalt-precorrin-6x r 82.8 7.9 0.00017 31.5 7.6 89 6-108 3-99 (248)
65 PF13439 Glyco_transf_4: Glyco 82.4 1.8 3.8E-05 31.7 3.5 29 17-45 13-41 (177)
66 PF04007 DUF354: Protein of un 81.7 6.6 0.00014 33.5 7.0 93 17-112 11-114 (335)
67 cd04962 GT1_like_5 This family 81.4 2.2 4.7E-05 35.6 4.1 101 7-107 2-117 (371)
68 COG1435 Tdk Thymidine kinase [ 80.6 13 0.00029 29.2 7.8 93 9-108 8-117 (201)
69 PRK02261 methylaspartate mutas 80.2 4 8.6E-05 30.1 4.6 44 4-47 2-45 (137)
70 cd01423 MGS_CPS_I_III Methylgl 80.1 4.6 0.0001 28.5 4.8 81 20-105 13-105 (116)
71 cd02067 B12-binding B12 bindin 79.5 3.4 7.3E-05 29.2 4.0 36 7-42 1-36 (119)
72 PRK05749 3-deoxy-D-manno-octul 77.3 4 8.7E-05 35.3 4.5 94 8-108 52-154 (425)
73 TIGR02468 sucrsPsyn_pln sucros 77.1 16 0.00035 35.9 8.8 91 17-108 196-340 (1050)
74 cd03807 GT1_WbnK_like This fam 76.8 16 0.00035 29.5 7.8 96 11-106 7-109 (365)
75 cd04955 GT1_like_6 This family 76.4 7.6 0.00016 32.0 5.9 92 16-108 15-115 (363)
76 cd03823 GT1_ExpE7_like This fa 75.8 5.4 0.00012 32.5 4.7 93 16-108 15-127 (359)
77 PF02571 CbiJ: Precorrin-6x re 74.8 8.7 0.00019 31.3 5.6 77 23-108 13-100 (249)
78 TIGR02470 sucr_synth sucrose s 74.3 39 0.00085 32.3 10.3 101 6-106 256-413 (784)
79 COG0496 SurE Predicted acid ph 73.0 12 0.00027 30.5 6.0 86 22-110 16-126 (252)
80 PRK13932 stationary phase surv 72.7 22 0.00048 29.1 7.4 88 22-110 21-134 (257)
81 cd03821 GT1_Bme6_like This fam 71.4 7.4 0.00016 31.7 4.6 31 15-45 13-43 (375)
82 PRK13931 stationary phase surv 69.6 25 0.00055 28.9 7.2 86 22-109 16-129 (261)
83 TIGR03449 mycothiol_MshA UDP-N 69.3 9.7 0.00021 32.4 5.0 95 15-109 19-132 (405)
84 TIGR00087 surE 5'/3'-nucleotid 69.2 36 0.00078 27.7 7.9 87 22-109 16-128 (244)
85 PRK00346 surE 5'(3')-nucleotid 68.8 22 0.00048 29.0 6.6 85 22-109 16-124 (250)
86 cd04951 GT1_WbdM_like This fam 68.2 6.4 0.00014 32.4 3.5 29 15-43 11-39 (360)
87 cd01635 Glycosyltransferase_GT 68.0 9.1 0.0002 28.8 4.2 26 15-40 12-37 (229)
88 cd03805 GT1_ALG2_like This fam 67.9 9.4 0.0002 32.2 4.6 36 7-42 2-39 (392)
89 PF02310 B12-binding: B12 bind 67.7 14 0.00029 25.8 4.7 36 7-42 2-37 (121)
90 TIGR02370 pyl_corrinoid methyl 67.1 11 0.00025 29.3 4.5 44 4-47 83-126 (197)
91 cd03825 GT1_wcfI_like This fam 66.8 11 0.00023 31.1 4.6 38 7-44 2-41 (365)
92 cd03802 GT1_AviGT4_like This f 66.0 13 0.00029 30.2 5.0 87 17-109 20-115 (335)
93 cd02070 corrinoid_protein_B12- 65.2 13 0.00028 29.0 4.5 41 5-45 82-122 (201)
94 PF09314 DUF1972: Domain of un 64.7 13 0.00028 28.9 4.4 77 20-111 21-102 (185)
95 PRK13935 stationary phase surv 63.0 54 0.0012 26.8 7.8 87 22-109 16-128 (253)
96 cd02069 methionine_synthase_B1 62.9 15 0.00033 29.1 4.6 44 4-47 87-130 (213)
97 PF01008 IF-2B: Initiation fac 62.9 9.3 0.0002 31.3 3.5 21 91-111 200-220 (282)
98 PRK10422 lipopolysaccharide co 62.2 13 0.00029 31.4 4.4 103 1-105 1-112 (352)
99 PRK00654 glgA glycogen synthas 62.1 14 0.0003 32.6 4.6 26 17-42 18-43 (466)
100 PRK13933 stationary phase surv 61.9 63 0.0014 26.4 8.0 87 22-109 16-129 (253)
101 PF13460 NAD_binding_10: NADH( 61.9 54 0.0012 24.3 7.4 78 23-109 12-97 (183)
102 cd01980 Chlide_reductase_Y Chl 59.5 23 0.00051 30.9 5.5 88 7-107 282-374 (416)
103 PRK06371 translation initiatio 59.3 20 0.00044 30.5 4.9 19 93-111 241-259 (329)
104 PLN02846 digalactosyldiacylgly 59.1 18 0.00039 32.3 4.7 40 3-42 2-46 (462)
105 TIGR00524 eIF-2B_rel eIF-2B al 58.8 20 0.00043 30.1 4.7 19 93-111 223-241 (303)
106 cd02071 MM_CoA_mut_B12_BD meth 58.4 20 0.00044 25.5 4.2 37 7-43 1-37 (122)
107 PF12000 Glyco_trans_4_3: Gkyc 57.4 82 0.0018 24.1 7.6 76 31-108 1-95 (171)
108 PF02441 Flavoprotein: Flavopr 57.2 21 0.00045 25.6 4.1 40 7-47 2-41 (129)
109 PRK08305 spoVFB dipicolinate s 57.1 21 0.00045 28.1 4.3 44 1-45 1-45 (196)
110 PRK05234 mgsA methylglyoxal sy 56.6 56 0.0012 24.1 6.4 90 15-110 12-115 (142)
111 PF04244 DPRP: Deoxyribodipyri 55.5 12 0.00027 29.9 2.9 27 17-43 46-72 (224)
112 cd03806 GT1_ALG11_like This fa 55.0 70 0.0015 27.8 7.8 88 21-108 19-136 (419)
113 PF12146 Hydrolase_4: Putative 55.0 28 0.0006 22.8 4.1 35 6-40 16-50 (79)
114 PRK13934 stationary phase surv 54.7 93 0.002 25.7 7.9 86 22-109 16-127 (266)
115 COG1066 Sms Predicted ATP-depe 54.3 10 0.00023 33.3 2.4 40 8-48 96-135 (456)
116 CHL00194 ycf39 Ycf39; Provisio 53.7 77 0.0017 26.2 7.6 20 23-42 14-33 (317)
117 PRK08335 translation initiatio 53.3 28 0.00062 28.8 4.7 19 93-111 203-221 (275)
118 TIGR00355 purH phosphoribosyla 53.3 19 0.00041 32.5 3.9 36 22-59 13-48 (511)
119 PRK06249 2-dehydropantoate 2-r 53.3 22 0.00048 29.6 4.2 38 1-43 1-38 (313)
120 cd03801 GT1_YqgM_like This fam 52.9 25 0.00054 28.2 4.4 95 16-110 14-117 (374)
121 PLN02891 IMP cyclohydrolase 52.3 17 0.00038 32.9 3.5 41 22-64 35-77 (547)
122 TIGR00512 salvage_mtnA S-methy 51.8 33 0.0007 29.3 5.0 19 93-111 251-269 (331)
123 COG4081 Uncharacterized protei 51.7 30 0.00066 25.4 4.0 38 8-45 6-44 (148)
124 PRK00881 purH bifunctional pho 51.3 25 0.00055 31.8 4.4 43 20-64 15-59 (513)
125 PRK06372 translation initiatio 50.7 29 0.00063 28.4 4.3 20 90-109 174-193 (253)
126 TIGR02853 spore_dpaA dipicolin 50.2 1.5E+02 0.0032 24.6 9.6 83 23-105 14-117 (287)
127 TIGR02095 glgA glycogen/starch 49.9 30 0.00066 30.4 4.8 37 7-43 2-44 (473)
128 PRK08334 translation initiatio 49.8 40 0.00086 29.1 5.2 19 93-111 264-282 (356)
129 PRK05720 mtnA methylthioribose 49.2 36 0.00077 29.2 4.8 19 93-111 251-269 (344)
130 PLN02275 transferase, transfer 49.1 1.6E+02 0.0036 24.8 10.7 53 7-59 6-62 (371)
131 COG1484 DnaC DNA replication p 49.0 24 0.00052 28.7 3.7 44 5-48 105-148 (254)
132 PRK10416 signal recognition pa 48.4 68 0.0015 27.1 6.4 84 6-90 115-206 (318)
133 TIGR02195 heptsyl_trn_II lipop 48.2 83 0.0018 26.2 7.0 98 7-104 1-103 (334)
134 PRK05772 translation initiatio 48.2 38 0.00083 29.2 4.9 20 93-112 272-291 (363)
135 cd03791 GT1_Glycogen_synthase_ 48.1 17 0.00036 31.9 2.8 23 20-42 20-42 (476)
136 TIGR03088 stp2 sugar transfera 48.1 89 0.0019 26.1 7.2 95 10-105 7-107 (374)
137 PF08323 Glyco_transf_5: Starc 48.0 17 0.00038 29.2 2.7 24 20-43 20-43 (245)
138 COG2185 Sbm Methylmalonyl-CoA 46.2 39 0.00085 25.1 4.1 38 4-41 11-48 (143)
139 PRK08535 translation initiatio 44.9 34 0.00074 28.8 4.0 19 93-111 214-232 (310)
140 COG1519 KdtA 3-deoxy-D-manno-o 44.7 1.1E+02 0.0023 27.1 7.1 95 8-109 51-154 (419)
141 TIGR00511 ribulose_e2b2 ribose 44.6 37 0.00079 28.5 4.2 20 93-112 209-228 (301)
142 cd03798 GT1_wlbH_like This fam 44.3 41 0.00088 27.1 4.4 32 15-46 13-44 (377)
143 PF00070 Pyr_redox: Pyridine n 44.1 38 0.00082 21.8 3.5 23 21-43 10-32 (80)
144 TIGR02193 heptsyl_trn_I lipopo 43.9 42 0.00091 27.7 4.5 100 7-107 1-112 (319)
145 PF04127 DFP: DNA / pantothena 43.6 27 0.00059 27.0 3.1 21 23-43 33-53 (185)
146 KOG2941 Beta-1,4-mannosyltrans 42.5 99 0.0021 26.9 6.3 56 4-59 11-69 (444)
147 PF08897 DUF1841: Domain of un 42.4 18 0.00039 26.7 1.8 19 13-31 56-74 (137)
148 PRK14106 murD UDP-N-acetylmura 41.4 51 0.0011 28.8 4.8 38 1-43 1-38 (450)
149 PF01380 SIS: SIS domain SIS d 41.3 55 0.0012 22.8 4.2 37 9-45 56-92 (131)
150 COG0162 TyrS Tyrosyl-tRNA synt 41.3 31 0.00068 30.2 3.3 27 16-43 48-74 (401)
151 PF13450 NAD_binding_8: NAD(P) 41.1 37 0.00079 21.4 2.9 20 23-42 9-28 (68)
152 PRK14478 nitrogenase molybdenu 40.8 98 0.0021 27.7 6.5 73 22-106 336-416 (475)
153 cd00861 ProRS_anticodon_short 40.2 63 0.0014 21.1 4.2 35 6-40 2-38 (94)
154 PTZ00445 p36-lilke protein; Pr 39.3 35 0.00076 27.3 3.1 27 17-43 74-101 (219)
155 TIGR02015 BchY chlorophyllide 39.2 80 0.0017 27.8 5.6 89 7-107 287-379 (422)
156 PRK06732 phosphopantothenate-- 39.1 66 0.0014 25.6 4.7 20 23-42 30-49 (229)
157 PF03808 Glyco_tran_WecB: Glyc 39.0 1.5E+02 0.0032 22.4 6.5 80 22-103 37-128 (172)
158 PF05368 NmrA: NmrA-like famil 38.8 36 0.00079 26.6 3.2 83 23-113 12-106 (233)
159 cd03799 GT1_amsK_like This is 38.8 73 0.0016 25.9 5.2 27 18-44 13-39 (355)
160 PRK12342 hypothetical protein; 38.4 99 0.0021 25.3 5.7 92 19-110 33-145 (254)
161 PF03720 UDPG_MGDP_dh_C: UDP-g 38.3 43 0.00094 23.1 3.2 26 20-45 17-42 (106)
162 PF00919 UPF0004: Uncharacteri 37.7 20 0.00043 24.7 1.3 17 174-190 34-50 (98)
163 PF01975 SurE: Survival protei 37.7 37 0.0008 26.6 3.0 90 22-111 16-135 (196)
164 TIGR02201 heptsyl_trn_III lipo 37.1 1.5E+02 0.0033 24.7 6.9 99 7-106 1-108 (344)
165 cd02065 B12-binding_like B12 b 37.1 62 0.0013 22.4 3.9 35 7-41 1-35 (125)
166 TIGR02472 sucr_P_syn_N sucrose 37.0 35 0.00077 29.7 3.1 92 17-108 27-144 (439)
167 PF04413 Glycos_transf_N: 3-De 36.9 29 0.00062 26.8 2.3 95 7-109 22-126 (186)
168 cd01452 VWA_26S_proteasome_sub 36.6 1.2E+02 0.0025 23.6 5.6 36 8-43 111-146 (187)
169 cd01965 Nitrogenase_MoFe_beta_ 36.3 2.4E+02 0.0051 24.7 8.1 83 21-107 310-395 (428)
170 PRK03359 putative electron tra 35.9 1.2E+02 0.0025 24.9 5.7 93 18-110 33-148 (256)
171 cd01422 MGS Methylglyoxal synt 35.9 1.5E+02 0.0033 20.8 5.8 86 17-108 9-108 (115)
172 PF03853 YjeF_N: YjeF-related 35.8 46 0.00099 25.2 3.2 36 4-41 24-60 (169)
173 cd02034 CooC The accessory pro 35.8 1E+02 0.0022 21.7 4.8 37 7-43 1-37 (116)
174 PF02142 MGS: MGS-like domain 35.1 20 0.00044 24.2 1.1 82 22-105 2-94 (95)
175 PF00448 SRP54: SRP54-type pro 35.1 79 0.0017 24.5 4.5 78 7-89 3-92 (196)
176 cd01141 TroA_d Periplasmic bin 34.9 68 0.0015 24.1 4.1 40 70-109 59-100 (186)
177 cd01421 IMPCH Inosine monophos 34.2 35 0.00076 26.6 2.3 37 21-59 12-48 (187)
178 PRK06036 translation initiatio 33.1 82 0.0018 27.0 4.6 19 93-111 251-269 (339)
179 COG0299 PurN Folate-dependent 33.0 52 0.0011 25.9 3.1 32 80-111 29-60 (200)
180 TIGR01285 nifN nitrogenase mol 32.7 2E+02 0.0044 25.3 7.2 75 20-107 321-397 (432)
181 PRK09620 hypothetical protein; 32.4 54 0.0012 26.3 3.2 20 23-42 33-52 (229)
182 cd03115 SRP The signal recogni 32.4 1.2E+02 0.0025 22.5 5.0 38 8-45 3-40 (173)
183 PRK13604 luxD acyl transferase 32.2 1.2E+02 0.0026 25.6 5.3 34 7-40 38-71 (307)
184 cd02067 B12-binding B12 bindin 31.9 91 0.002 21.6 4.1 38 4-41 49-87 (119)
185 cd01968 Nitrogenase_NifE_I Nit 31.9 3.4E+02 0.0073 23.5 8.4 74 23-106 300-379 (410)
186 PF09001 DUF1890: Domain of un 31.8 43 0.00093 24.8 2.3 28 21-48 15-42 (139)
187 COG1255 Uncharacterized protei 31.7 55 0.0012 23.6 2.8 32 22-56 25-56 (129)
188 PRK13982 bifunctional SbtC-lik 31.4 85 0.0018 28.2 4.6 51 6-58 257-319 (475)
189 TIGR00234 tyrS tyrosyl-tRNA sy 31.4 48 0.001 28.7 3.0 26 16-42 46-71 (377)
190 PRK10964 ADP-heptose:LPS hepto 31.4 88 0.0019 25.9 4.5 53 7-59 2-58 (322)
191 PRK13236 nitrogenase reductase 31.3 1.1E+02 0.0024 25.3 5.0 42 1-42 1-43 (296)
192 PF12695 Abhydrolase_5: Alpha/ 31.1 1.4E+02 0.003 20.7 5.0 31 11-41 4-34 (145)
193 cd06318 PBP1_ABC_sugar_binding 30.5 2.5E+02 0.0054 22.1 6.9 32 10-41 5-37 (282)
194 PRK07313 phosphopantothenoylcy 30.5 68 0.0015 24.7 3.4 41 7-48 3-43 (182)
195 cd05017 SIS_PGI_PMI_1 The memb 30.2 1.4E+02 0.003 20.8 4.8 53 10-62 47-100 (119)
196 TIGR01283 nifE nitrogenase mol 30.2 1.8E+02 0.0038 25.8 6.4 74 22-107 338-419 (456)
197 TIGR00745 apbA_panE 2-dehydrop 30.1 37 0.0008 27.5 2.0 25 24-48 5-29 (293)
198 TIGR00064 ftsY signal recognit 30.1 1.4E+02 0.003 24.5 5.4 38 7-44 74-111 (272)
199 PRK05294 carB carbamoyl phosph 29.9 1.5E+02 0.0033 29.4 6.4 83 18-107 948-1038(1066)
200 PRK07206 hypothetical protein; 29.9 1.3E+02 0.0029 25.8 5.5 89 7-103 4-95 (416)
201 TIGR03264 met_CoM_red_C methyl 29.7 72 0.0016 24.7 3.3 34 7-40 35-69 (194)
202 cd03822 GT1_ecORF704_like This 29.5 94 0.002 25.2 4.4 30 16-45 13-42 (366)
203 PRK06849 hypothetical protein; 29.5 1.4E+02 0.0031 25.5 5.6 38 1-43 1-38 (389)
204 PF13419 HAD_2: Haloacid dehal 29.2 1.2E+02 0.0025 21.8 4.5 84 22-107 82-176 (176)
205 COG1817 Uncharacterized protei 29.0 2.3E+02 0.005 24.2 6.4 95 16-111 10-114 (346)
206 PRK00771 signal recognition pa 28.9 1.4E+02 0.0031 26.4 5.5 41 6-46 96-136 (437)
207 COG0467 RAD55 RecA-superfamily 28.8 1.2E+02 0.0027 24.3 4.9 44 5-48 23-66 (260)
208 PRK11509 hydrogenase-1 operon 28.4 2.1E+02 0.0046 20.9 5.5 85 20-109 5-99 (132)
209 cd00860 ThrRS_anticodon ThrRS 28.4 1.4E+02 0.003 19.2 4.3 33 7-40 3-35 (91)
210 TIGR00421 ubiX_pad polyprenyl 28.3 72 0.0016 24.6 3.2 26 23-48 16-41 (181)
211 PF01316 Arg_repressor: Argini 28.3 38 0.00083 21.9 1.4 20 23-42 23-42 (70)
212 KOG2585 Uncharacterized conser 28.2 1.2E+02 0.0026 26.9 4.8 38 4-42 265-302 (453)
213 PRK14098 glycogen synthase; Pr 27.9 1.5E+02 0.0032 26.5 5.5 42 1-42 1-48 (489)
214 PF08026 Antimicrobial_5: Bee 27.6 8.5 0.00018 21.3 -1.5 16 11-26 16-31 (39)
215 PRK10916 ADP-heptose:LPS hepto 27.4 1E+02 0.0022 25.9 4.3 98 7-105 2-105 (348)
216 PRK05986 cob(I)alamin adenolsy 27.4 1.6E+02 0.0034 23.1 4.9 86 5-90 22-125 (191)
217 TIGR00640 acid_CoA_mut_C methy 27.3 1.1E+02 0.0023 22.3 3.8 38 4-41 52-90 (132)
218 PF01497 Peripla_BP_2: Peripla 27.3 87 0.0019 24.2 3.6 42 70-111 50-93 (238)
219 PRK07178 pyruvate carboxylase 27.3 2.6E+02 0.0057 24.8 7.0 84 22-106 14-103 (472)
220 TIGR01425 SRP54_euk signal rec 27.2 1.5E+02 0.0032 26.3 5.3 39 7-45 102-140 (429)
221 PF10727 Rossmann-like: Rossma 26.8 1.3E+02 0.0029 21.7 4.2 35 5-44 10-44 (127)
222 cd01974 Nitrogenase_MoFe_beta 26.8 4.4E+02 0.0095 23.1 8.6 85 6-107 304-401 (435)
223 PRK13789 phosphoribosylamine-- 26.7 2E+02 0.0044 25.2 6.1 91 1-105 1-96 (426)
224 PF06506 PrpR_N: Propionate ca 26.6 88 0.0019 23.7 3.4 30 79-111 124-153 (176)
225 cd05014 SIS_Kpsf KpsF-like pro 26.6 1.6E+02 0.0034 20.5 4.6 37 10-46 51-87 (128)
226 PF03403 PAF-AH_p_II: Platelet 26.5 69 0.0015 27.7 3.1 37 5-41 99-135 (379)
227 PF07015 VirC1: VirC1 protein; 26.5 1.1E+02 0.0023 24.8 4.0 34 14-47 11-44 (231)
228 PF10657 RC-P840_PscD: Photosy 26.2 1E+02 0.0023 22.3 3.4 40 4-43 45-84 (144)
229 TIGR02113 coaC_strep phosphopa 26.1 78 0.0017 24.3 3.0 35 14-48 8-42 (177)
230 cd00561 CobA_CobO_BtuR ATP:cor 26.0 1.6E+02 0.0036 22.1 4.7 54 7-60 4-64 (159)
231 PRK14099 glycogen synthase; Pr 26.0 1.7E+02 0.0037 26.1 5.6 39 4-42 2-46 (485)
232 COG3433 Aryl carrier domain [S 25.9 39 0.00084 22.1 1.1 22 20-41 32-53 (74)
233 cd00532 MGS-like MGS-like doma 25.8 62 0.0014 22.5 2.3 82 20-107 12-105 (112)
234 TIGR01675 plant-AP plant acid 25.7 84 0.0018 25.3 3.2 26 19-44 122-147 (229)
235 COG0138 PurH AICAR transformyl 25.6 82 0.0018 28.4 3.4 36 22-59 15-50 (515)
236 PF02951 GSH-S_N: Prokaryotic 25.6 1.7E+02 0.0037 20.9 4.5 25 20-44 18-42 (119)
237 cd01916 ACS_1 Acetyl-CoA synth 25.5 74 0.0016 30.2 3.2 33 79-111 264-298 (731)
238 PLN02939 transferase, transfer 25.5 1.7E+02 0.0038 28.8 5.7 40 4-43 480-525 (977)
239 PRK14476 nitrogenase molybdenu 25.4 2.2E+02 0.0048 25.3 6.1 73 20-106 321-394 (455)
240 cd01983 Fer4_NifH The Fer4_Nif 25.2 1.8E+02 0.004 18.2 4.7 33 8-40 2-34 (99)
241 TIGR02852 spore_dpaB dipicolin 25.0 1.1E+02 0.0023 23.8 3.6 31 15-45 10-40 (187)
242 PF02603 Hpr_kinase_N: HPr Ser 24.8 1.5E+02 0.0033 21.2 4.2 39 73-111 74-115 (127)
243 cd01018 ZntC Metal binding pro 24.6 3.8E+02 0.0082 21.6 7.3 37 79-115 216-254 (266)
244 PF02310 B12-binding: B12 bind 24.5 91 0.002 21.5 3.0 36 4-39 50-85 (121)
245 COG0505 CarA Carbamoylphosphat 24.5 1.5E+02 0.0032 25.7 4.6 38 4-47 178-215 (368)
246 PRK14089 ipid-A-disaccharide s 24.5 1E+02 0.0023 26.3 3.8 31 79-109 75-110 (347)
247 cd03789 GT1_LPS_heptosyltransf 24.4 1.1E+02 0.0025 24.6 3.9 48 7-54 1-51 (279)
248 cd03466 Nitrogenase_NifN_2 Nit 24.4 3.5E+02 0.0075 23.7 7.1 78 20-107 310-396 (429)
249 PF00391 PEP-utilizers: PEP-ut 24.4 1.2E+02 0.0027 19.6 3.4 31 79-109 29-61 (80)
250 TIGR02699 archaeo_AfpA archaeo 24.3 1E+02 0.0022 23.7 3.3 34 13-46 6-41 (174)
251 cd00316 Oxidoreductase_nitroge 24.3 4.4E+02 0.0096 22.3 8.6 35 80-114 202-237 (399)
252 PLN03050 pyridoxine (pyridoxam 24.2 76 0.0017 25.7 2.8 34 6-41 61-95 (246)
253 TIGR03087 stp1 sugar transfera 24.2 68 0.0015 27.3 2.7 32 11-43 8-40 (397)
254 PF02558 ApbA: Ketopantoate re 24.1 83 0.0018 22.7 2.8 20 24-43 12-31 (151)
255 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.9 1.7E+02 0.0038 20.1 4.4 35 11-45 51-85 (126)
256 TIGR01369 CPSaseII_lrg carbamo 23.9 2.3E+02 0.005 28.2 6.4 92 8-107 939-1039(1050)
257 PF02780 Transketolase_C: Tran 23.7 1.8E+02 0.0039 20.3 4.4 36 5-42 9-44 (124)
258 PRK06222 ferredoxin-NADP(+) re 23.7 99 0.0021 25.3 3.4 38 6-45 99-136 (281)
259 PF07801 DUF1647: Protein of u 23.6 1.6E+02 0.0034 21.9 4.1 60 4-63 58-125 (142)
260 COG5148 RPN10 26S proteasome r 23.5 2E+02 0.0043 22.7 4.7 36 7-42 110-145 (243)
261 PLN02650 dihydroflavonol-4-red 23.4 1.4E+02 0.003 24.9 4.4 37 1-41 1-37 (351)
262 COG1618 Predicted nucleotide k 23.3 3.6E+02 0.0077 20.9 6.2 59 1-59 1-59 (179)
263 PF01738 DLH: Dienelactone hyd 23.2 2E+02 0.0043 22.1 5.0 34 6-40 15-48 (218)
264 cd05013 SIS_RpiR RpiR-like pro 23.1 1.8E+02 0.004 20.0 4.4 36 9-44 63-98 (139)
265 COG1184 GCD2 Translation initi 23.1 2.5E+02 0.0053 23.7 5.6 84 16-109 126-229 (301)
266 TIGR03029 EpsG chain length de 23.1 2.1E+02 0.0046 23.0 5.3 40 3-42 100-141 (274)
267 TIGR01990 bPGM beta-phosphoglu 23.0 2.4E+02 0.0053 20.7 5.3 80 22-107 92-184 (185)
268 COG4088 Predicted nucleotide k 23.0 1.1E+02 0.0024 24.7 3.4 105 7-120 3-119 (261)
269 TIGR02114 coaB_strep phosphopa 22.9 87 0.0019 24.9 2.9 19 23-41 29-47 (227)
270 TIGR03127 RuMP_HxlB 6-phospho 22.9 1.8E+02 0.0039 21.8 4.5 37 10-46 76-112 (179)
271 TIGR00708 cobA cob(I)alamin ad 22.9 2.8E+02 0.0061 21.2 5.5 87 4-90 4-107 (173)
272 TIGR00288 conserved hypothetic 22.8 1.2E+02 0.0026 23.0 3.4 48 7-59 108-156 (160)
273 cd01147 HemV-2 Metal binding p 22.4 1.4E+02 0.003 23.6 4.0 41 70-110 64-107 (262)
274 PF00175 NAD_binding_1: Oxidor 22.3 1.7E+02 0.0036 19.5 3.9 28 19-46 8-37 (109)
275 PRK11519 tyrosine kinase; Prov 22.3 1.8E+02 0.0039 27.5 5.2 40 4-43 524-565 (719)
276 COG1703 ArgK Putative periplas 22.1 2.7E+02 0.0059 23.7 5.6 40 7-46 53-92 (323)
277 PRK07454 short chain dehydroge 22.0 2.4E+02 0.0052 21.8 5.3 39 1-42 1-39 (241)
278 COG1797 CobB Cobyrinic acid a, 21.9 3.6E+02 0.0079 24.1 6.6 31 8-38 4-34 (451)
279 PF10237 N6-adenineMlase: Prob 21.8 1.8E+02 0.004 22.0 4.3 67 24-90 14-97 (162)
280 PRK07494 2-octaprenyl-6-methox 21.8 1.1E+02 0.0023 26.0 3.4 37 1-42 3-39 (388)
281 TIGR03492 conserved hypothetic 21.8 3.2E+02 0.0069 23.6 6.3 82 20-107 11-119 (396)
282 cd00859 HisRS_anticodon HisRS 21.4 1.8E+02 0.0039 18.2 3.8 34 7-41 3-36 (91)
283 PRK10751 molybdopterin-guanine 21.4 2.5E+02 0.0053 21.5 4.9 41 1-41 1-42 (173)
284 COG0300 DltE Short-chain dehyd 21.4 1E+02 0.0022 25.4 3.0 35 4-41 4-38 (265)
285 PF07894 DUF1669: Protein of u 21.3 1.4E+02 0.003 25.0 3.7 33 79-111 147-184 (284)
286 PF01210 NAD_Gly3P_dh_N: NAD-d 21.3 78 0.0017 23.4 2.2 20 24-43 13-32 (157)
287 TIGR00441 gmhA phosphoheptose 21.2 3.4E+02 0.0074 19.9 5.7 37 9-45 82-118 (154)
288 PRK10867 signal recognition pa 21.2 2.3E+02 0.005 25.1 5.3 40 7-46 102-142 (433)
289 TIGR01680 Veg_Stor_Prot vegeta 21.2 1.2E+02 0.0027 25.1 3.4 27 18-44 146-172 (275)
290 PF03767 Acid_phosphat_B: HAD 21.2 72 0.0016 25.5 2.1 23 21-43 119-141 (229)
291 PRK08265 short chain dehydroge 21.1 2.4E+02 0.0051 22.3 5.1 38 1-41 1-38 (261)
292 COG0313 Predicted methyltransf 21.1 1.7E+02 0.0037 24.3 4.2 46 75-120 72-125 (275)
293 PRK05920 aromatic acid decarbo 21.0 1.3E+02 0.0027 23.8 3.3 40 6-46 4-43 (204)
294 PRK06719 precorrin-2 dehydroge 20.9 1.1E+02 0.0024 22.8 3.0 33 5-42 13-45 (157)
295 PF00289 CPSase_L_chain: Carba 20.8 79 0.0017 22.2 2.0 29 11-41 77-105 (110)
296 cd01143 YvrC Periplasmic bindi 20.7 2.1E+02 0.0045 21.3 4.5 41 70-110 50-91 (195)
297 PRK09361 radB DNA repair and r 20.6 2.5E+02 0.0054 21.8 5.0 35 8-42 26-60 (225)
298 TIGR00176 mobB molybdopterin-g 20.6 2.2E+02 0.0048 21.1 4.5 35 8-42 2-36 (155)
299 PF03796 DnaB_C: DnaB-like hel 20.6 1.8E+02 0.0039 23.3 4.3 40 8-47 22-62 (259)
300 TIGR02700 flavo_MJ0208 archaeo 20.5 1.4E+02 0.0031 23.8 3.6 38 11-48 4-44 (234)
301 PLN02211 methyl indole-3-aceta 20.5 2.7E+02 0.0058 22.5 5.3 40 4-44 17-56 (273)
302 PRK14974 cell division protein 20.5 2.7E+02 0.0058 23.8 5.4 39 6-44 141-179 (336)
303 cd03809 GT1_mtfB_like This fam 20.4 1E+02 0.0023 24.9 3.0 30 16-45 15-44 (365)
304 cd00395 Tyr_Trp_RS_core cataly 20.2 1E+02 0.0023 25.3 2.9 25 17-42 16-40 (273)
305 PRK14477 bifunctional nitrogen 20.2 7.4E+02 0.016 24.3 8.9 86 6-108 321-414 (917)
306 COG0240 GpsA Glycerol-3-phosph 20.1 2.4E+02 0.0053 24.1 5.0 31 7-42 3-33 (329)
307 COG2910 Putative NADH-flavin r 20.1 1.1E+02 0.0023 24.2 2.7 18 24-41 15-32 (211)
308 COG0569 TrkA K+ transport syst 20.0 1E+02 0.0022 24.5 2.7 84 23-113 13-104 (225)
No 1
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.1e-40 Score=290.34 Aligned_cols=196 Identities=33% Similarity=0.587 Sum_probs=151.3
Q ss_pred CCCC--CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC--------------CCceEEeccCCCCC
Q 036105 1 MNED--RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG--------------PHVGVEPISDGFDE 64 (198)
Q Consensus 1 m~~~--~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~--------------~~i~~~~lp~~~~~ 64 (198)
|.++ ++|||++|||+|||+|||++|||+|++||+.|||++|+.+++++.+ ..++|..+|+|+|+
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~ 80 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAE 80 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCC
Confidence 5554 7899999999999999999999999999999999999987664321 12677778888876
Q ss_pred CCcccccc---------------hhhhhc------CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhcc
Q 036105 65 GGYAQAKN---------------EDLFLN------FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHH 123 (198)
Q Consensus 65 ~~~~~~~~---------------~~~~l~------~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~ 123 (198)
+ .+...+ ++++++ .+++|||+|++++|+.+||+++|||+++||+++|+++++++++..
T Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~ 159 (480)
T PLN02555 81 D-DPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH 159 (480)
T ss_pred C-cccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh
Confidence 3 221111 122222 245999999999999999999999999999999999999988865
Q ss_pred CCCccCC-CCCCCceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 124 GWLTLPV-KLEDTPLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 124 ~~~~~~~-~~~~~~i~vPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
+.++.+. .+.+..+.+||+|+++.+|+|.++...+..+...+.+.+..++..+|+|||+|||+|||++++++++
T Consensus 160 ~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 234 (480)
T PLN02555 160 GLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMS 234 (480)
T ss_pred cCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHh
Confidence 5333221 1112446799999999999998765322333445666777788889999999999999999999885
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.5e-40 Score=289.10 Aligned_cols=190 Identities=42% Similarity=0.706 Sum_probs=150.6
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC---CCceEEeccCCCCCCCcccccc-----
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG---PHVGVEPISDGFDEGGYAQAKN----- 72 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~---~~i~~~~lp~~~~~~~~~~~~~----- 72 (198)
|.++++|||+||||+|||+|||++|||+|+++|++|||++|+.+.+++.+ ++|+++.+|+|+|+++.+...+
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~ 80 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYL 80 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHH
Confidence 77888999999999999999999999999999999999999988766532 4699999999998733222211
Q ss_pred ----------hhhhhc------CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhccCCCccCCCCCCCc
Q 036105 73 ----------EDLFLN------FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGWLTLPVKLEDTP 136 (198)
Q Consensus 73 ----------~~~~l~------~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 136 (198)
++++++ .|++|||+|+|++|+.+||+++|||++.||+++++.++++++..... . +..
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~-----~--~~~ 153 (449)
T PLN02173 81 QNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINN-----G--SLT 153 (449)
T ss_pred HHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhcc-----C--Ccc
Confidence 223333 13499999999999999999999999999999988887765432110 1 133
Q ss_pred eecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 137 LSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 137 i~vPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
+.+||+|+++.+|+|.++.+.+......+.+.+..++..+|+|||+|||+|||++++++++
T Consensus 154 ~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 214 (449)
T PLN02173 154 LPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLS 214 (449)
T ss_pred CCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHH
Confidence 5689999999999998775433333344556677788889999999999999999999885
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.6e-38 Score=278.79 Aligned_cols=193 Identities=21% Similarity=0.302 Sum_probs=145.6
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEecc----CCCCCCCcccccc--
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG-----PHVGVEPIS----DGFDEGGYAQAKN-- 72 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~lp----~~~~~~~~~~~~~-- 72 (198)
+++|||++|||+|||+|||++|||+|+++|++|||++|+.|++++.+ ++|+++.+| +++|+ |.++..+
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPd-G~~~~~~~~ 86 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPS-GVENVKDLP 86 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCC-CCcChhhcc
Confidence 58999999999999999999999999999999999999999876543 468887754 25554 3322111
Q ss_pred -----------------hhhhhc---CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhccCCCccC-CC
Q 036105 73 -----------------EDLFLN---FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGWLTLP-VK 131 (198)
Q Consensus 73 -----------------~~~~l~---~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~~~~~~~-~~ 131 (198)
+.++++ .+++|||+|++++|+.+||+++|||++.||+++|+++++++++..+..... ..
T Consensus 87 ~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~~ 166 (477)
T PLN02863 87 PSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINPD 166 (477)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccccccc
Confidence 112222 357999999999999999999999999999999999999998764321110 11
Q ss_pred CCCCce---ecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 132 LEDTPL---SIPGLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 132 ~~~~~i---~vPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
+.++.+ .+||+|+++.+|+|.+++.........+.+.+..+..+.++||++|||+|||++++++++
T Consensus 167 ~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 235 (477)
T PLN02863 167 DQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLK 235 (477)
T ss_pred ccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHH
Confidence 112222 489999999999998765322222334455555566678899999999999999999885
No 4
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=9.3e-38 Score=272.09 Aligned_cols=186 Identities=31% Similarity=0.522 Sum_probs=142.5
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEecccc-cccc-C---C-CCceEEeccCCCCCCCcccccc----
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLAS-KGVKATLATTHYT-AKSM-C---G-PHVGVEPISDGFDEGGYAQAKN---- 72 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~-~G~~Vt~~~~~~~-~~~~-~---~-~~i~~~~lp~~~~~~~~~~~~~---- 72 (198)
.++|||++|||+|||+|||++|||+|++ +|++|||++|+.+ .+++ . . ++|+|+.++||+|++......+
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~ 81 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNR 81 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHH
Confidence 3579999999999999999999999996 7999999999965 3322 1 1 3699999999888631111111
Q ss_pred -----------hhhhhc------CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhccCCCccCCCCCCC
Q 036105 73 -----------EDLFLN------FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGWLTLPVKLEDT 135 (198)
Q Consensus 73 -----------~~~~l~------~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 135 (198)
+.+++. .+++|||+|++++|+.+||+++|||++.||+++|+++++++++..+. +.
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~--------~~ 153 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN--------NS 153 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC--------CC
Confidence 222332 24699999999999999999999999999999999999988875321 13
Q ss_pred ceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhccC--CCCEEEEcChhhhcHHHHHHhh
Q 036105 136 PLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLD--KADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 136 ~i~vPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~--~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
.+.+||+|+++.+|+|.++...+....+.+.+.+..+... .++|||+|||+|||++++++++
T Consensus 154 ~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 217 (455)
T PLN02152 154 VFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIP 217 (455)
T ss_pred eeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhh
Confidence 4579999999999999877543223333445555555443 3689999999999999999885
No 5
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=6.8e-38 Score=274.22 Aligned_cols=195 Identities=19% Similarity=0.242 Sum_probs=149.0
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeccccccccCC-----CCceEEeccC----CCCCCCcccc
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLA-SKGVKATLATTHYTAKSMCG-----PHVGVEPISD----GFDEGGYAQA 70 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~-~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~lp~----~~~~~~~~~~ 70 (198)
|...++|||++|||+|||++||++|||+|+ ++|++|||++|+.+.+++.+ ++|+++.+|+ ++|+.+.+..
T Consensus 1 ~~~~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~~~~~ 80 (481)
T PLN02992 1 MHITKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPSAHVV 80 (481)
T ss_pred CCCCCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCCccHH
Confidence 667889999999999999999999999998 79999999999988765421 4699999984 6652221111
Q ss_pred -----------cchhhhhc---CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhcc--CCCccCCCCCC
Q 036105 71 -----------KNEDLFLN---FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHH--GWLTLPVKLED 134 (198)
Q Consensus 71 -----------~~~~~~l~---~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 134 (198)
..++++++ .+++|||+|++++|+.+||+++|||++.||+++|++++++++++. .....+....+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~ 160 (481)
T PLN02992 81 TKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTVQR 160 (481)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccccCC
Confidence 12233343 368999999999999999999999999999999999988877652 11111111112
Q ss_pred CceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 135 TPLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 135 ~~i~vPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
+.+.+||+|+++.+|+|..+.++. ...++.+.+..++..+|+|||+|||+|||++++++++
T Consensus 161 ~~~~iPg~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~ 221 (481)
T PLN02992 161 KPLAMPGCEPVRFEDTLDAYLVPD--EPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQ 221 (481)
T ss_pred CCcccCCCCccCHHHhhHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHh
Confidence 346799999999999997554332 2344566777778889999999999999999999874
No 6
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.1e-37 Score=271.75 Aligned_cols=191 Identities=27% Similarity=0.321 Sum_probs=141.7
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC--CCceEEeccCCCCCCCccccc----------
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG--PHVGVEPISDGFDEGGYAQAK---------- 71 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~--~~i~~~~lp~~~~~~~~~~~~---------- 71 (198)
+++|||+||||+|||+|||++|||+|++||+.|||++|+.|..+... ++|+++.+|+|+|+++.+...
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~~~~~~~~~~~~ 85 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNLGPIEFLHKLNK 85 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCcccccccCHHHHHHHHHH
Confidence 36799999999999999999999999999999999999988632211 469999999999873222110
Q ss_pred ----chhhhhc-------CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhcc----CC-CccCCCCCCC
Q 036105 72 ----NEDLFLN-------FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHH----GW-LTLPVKLEDT 135 (198)
Q Consensus 72 ----~~~~~l~-------~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~----~~-~~~~~~~~~~ 135 (198)
.++++++ .+++|||+|++++|+.++|+++|||++.||+++|+++++++++.. +. .+....+.+.
T Consensus 86 ~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (451)
T PLN02410 86 ECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEPKGQQ 165 (451)
T ss_pred HhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccccccCc
Confidence 1122222 357999999999999999999999999999999999988877532 11 1211111123
Q ss_pred ceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 136 PLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 136 ~i~vPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
.+.+||+|+++.+|+|...... .+.....+.. .....+|+||++|||+|||++++++++
T Consensus 166 ~~~iPg~~~~~~~dlp~~~~~~--~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~l~ 224 (451)
T PLN02410 166 NELVPEFHPLRCKDFPVSHWAS--LESIMELYRN-TVDKRTASSVIINTASCLESSSLSRLQ 224 (451)
T ss_pred cccCCCCCCCChHHCcchhcCC--cHHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHHHHH
Confidence 3468999999999999754322 2223333332 234678999999999999999999985
No 7
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.1e-37 Score=270.27 Aligned_cols=194 Identities=23% Similarity=0.410 Sum_probs=147.6
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEeccCCCCCCCccc---------
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG-----PHVGVEPISDGFDEGGYAQ--------- 69 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~lp~~~~~~~~~~--------- 69 (198)
+++|||++|||+|||+|||++|||+|+++|++|||+||+.+.+++.+ ++|+++.+|++++++....
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~~~~~~~l~~a~~ 84 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDPPRDFFSIENSME 84 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCccccHHHHHHHHH
Confidence 45799999999999999999999999999999999999998765543 3699999998876421000
Q ss_pred ---ccchhhhhc-----CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhcc----CCCccCC-CCCCCc
Q 036105 70 ---AKNEDLFLN-----FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHH----GWLTLPV-KLEDTP 136 (198)
Q Consensus 70 ---~~~~~~~l~-----~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~----~~~~~~~-~~~~~~ 136 (198)
...++++++ .+++|||+|++++|+.++|+++|||+++||++++++++++++++. +...... ....++
T Consensus 85 ~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (448)
T PLN02562 85 NTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPRQLEK 164 (448)
T ss_pred HhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccccccccc
Confidence 111223333 246899999999999999999999999999999999998877642 1111110 011123
Q ss_pred e-ecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 137 L-SIPGLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 137 i-~vPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
+ .+||+|+++.+|+|.++.........++.+.+..+...+++||++|||+|||++++++++
T Consensus 165 ~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 226 (448)
T PLN02562 165 ICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQ 226 (448)
T ss_pred cccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHH
Confidence 4 689999999999998765432223345667777788889999999999999999998764
No 8
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=6.8e-37 Score=268.93 Aligned_cols=192 Identities=23% Similarity=0.244 Sum_probs=144.2
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCC----CeEEEEecccccc----ccC-------C--CCceEEeccCCCCCCC
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKG----VKATLATTHYTAK----SMC-------G--PHVGVEPISDGFDEGG 66 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G----~~Vt~~~~~~~~~----~~~-------~--~~i~~~~lp~~~~~~~ 66 (198)
.++|||++|||+|||+|||++|||+|++|| +.|||++|+.+.. ++. + .+|+++++|++.++.+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 467999999999999999999999999996 8999999986532 111 1 2599999997643223
Q ss_pred cccc------------cchhhhhc---CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhccC--CCccC
Q 036105 67 YAQA------------KNEDLFLN---FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHG--WLTLP 129 (198)
Q Consensus 67 ~~~~------------~~~~~~l~---~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~~--~~~~~ 129 (198)
.+.. +.+++++. .+++|||+|+|++|+.+||+++|||++.||+++|++++++++++.. ....+
T Consensus 82 ~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~ 161 (480)
T PLN00164 82 AAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEVAVE 161 (480)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcccccCc
Confidence 2211 11223333 2579999999999999999999999999999999999999887532 11111
Q ss_pred CCCCCCceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 130 VKLEDTPLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 130 ~~~~~~~i~vPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
..+..+.+.+||+|+++.+|+|..+...+. ..++.+....++..+|+|||+|||+|||++++++++
T Consensus 162 ~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~--~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 227 (480)
T PLN00164 162 FEEMEGAVDVPGLPPVPASSLPAPVMDKKS--PNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIA 227 (480)
T ss_pred ccccCcceecCCCCCCChHHCCchhcCCCc--HHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHH
Confidence 111123467999999999999987654321 223455556677889999999999999999999885
No 9
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=8e-37 Score=268.25 Aligned_cols=189 Identities=23% Similarity=0.348 Sum_probs=139.0
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC---------CCceEEecc-----CCCCCCCccc
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG---------PHVGVEPIS-----DGFDEGGYAQ 69 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~---------~~i~~~~lp-----~~~~~~~~~~ 69 (198)
++.|||++|||+|||+|||++|||+|++||+.|||++|+.+..++.+ ..|+|+++| ||+|+ +.++
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~-~~~~ 85 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPI-GCEN 85 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCC-Cccc
Confidence 45799999999999999999999999999999999999998765432 138999988 68876 3222
Q ss_pred cc--------------------chhhhhc---CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhccCCC
Q 036105 70 AK--------------------NEDLFLN---FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGWL 126 (198)
Q Consensus 70 ~~--------------------~~~~~l~---~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~~~~ 126 (198)
.. .+.++|. .+++|||+|++++|+.++|+++|||+++||+++++++++++++.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 165 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNA 165 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcc
Confidence 11 1112222 357999999999999999999999999999999999887665431111
Q ss_pred ccCCCCCCCceecCCCCC---CCCCCCCCCCCCCCCchHHHHHHHHHHh-ccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 127 TLPVKLEDTPLSIPGLPS---LNFIDLPTFVKFPESYPAYLAMKLSQYS-NLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 127 ~~~~~~~~~~i~vPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~-~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
..+..++++++.+||+|+ ++.+|||..+..... .+.+....+ ..++|+|||+|||+|||++++++++
T Consensus 166 ~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~ 236 (491)
T PLN02534 166 HLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPD----LDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYE 236 (491)
T ss_pred cccCCCCCceeecCCCCccccccHHHCChhhcCccc----HHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHH
Confidence 111112234577999985 899999976532211 122233333 3456899999999999999999885
No 10
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.9e-37 Score=267.95 Aligned_cols=191 Identities=18% Similarity=0.245 Sum_probs=140.0
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC------CCceEEecc----CCCCCCCcccccch
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG------PHVGVEPIS----DGFDEGGYAQAKNE 73 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~------~~i~~~~lp----~~~~~~~~~~~~~~ 73 (198)
.++|||++|||+|||+|||++|||+|++||+.|||++|+.|..++.+ ++|+++.+| +|+|++ .++..++
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~-~~~~~~~ 83 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSS-AESSTDV 83 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCC-ccccccc
Confidence 46799999999999999999999999999999999999998866541 358999988 678763 2221111
Q ss_pred -------------------hhhhc-CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhcc--CCCccCCC
Q 036105 74 -------------------DLFLN-FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHH--GWLTLPVK 131 (198)
Q Consensus 74 -------------------~~~l~-~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~--~~~~~~~~ 131 (198)
+++++ .+++|||+|+|++|+.+||+++|||+++||++++++++++++... .....+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 163 (472)
T PLN02670 84 PYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRST 163 (472)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCCc
Confidence 12222 478999999999999999999999999999999999998765421 11111111
Q ss_pred CCCCce-ecCCCCC------CCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 132 LEDTPL-SIPGLPS------LNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 132 ~~~~~i-~vPglp~------l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
++.+ .+||+++ ++.+|+|.++...+........+.+..+...+|+|||+|||+|||++++++++
T Consensus 164 --~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~ 234 (472)
T PLN02670 164 --AEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLS 234 (472)
T ss_pred --cccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHH
Confidence 1222 3565422 56779998664322222223344566667788999999999999999999985
No 11
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=4.3e-36 Score=261.41 Aligned_cols=192 Identities=20% Similarity=0.249 Sum_probs=141.3
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCC----CeEEEEecccccccc----C----C-CCceEEeccCCCCC-CCccc
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKG----VKATLATTHYTAKSM----C----G-PHVGVEPISDGFDE-GGYAQ 69 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G----~~Vt~~~~~~~~~~~----~----~-~~i~~~~lp~~~~~-~~~~~ 69 (198)
.+.|||++|||+|||+|||++|||+|+++| ++||++++..+...+ . . ++|+|+.+|++.+. ++.+.
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccc
Confidence 357999999999999999999999999998 455556666543321 1 1 46999999976642 11111
Q ss_pred cc---------------chhhhhc-----CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhccCC--Cc
Q 036105 70 AK---------------NEDLFLN-----FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGW--LT 127 (198)
Q Consensus 70 ~~---------------~~~~~l~-----~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~~~--~~ 127 (198)
.. .+.++++ .+++|||+|++++|+.++|+++|||+++||+++|++++++++++... .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 161 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTP 161 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccccc
Confidence 10 1222332 25699999999999999999999999999999999999998875321 11
Q ss_pred cCCCCCCCceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 128 LPVKLEDTPLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 128 ~~~~~~~~~i~vPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
....++...+.+||+|+++.+|+|..+.+.+ +..++.+.+..+...+|+|||+|||+|||++++++++
T Consensus 162 ~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~ 229 (451)
T PLN03004 162 GKNLKDIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAIT 229 (451)
T ss_pred ccccccCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHH
Confidence 1100111346799999999999998775432 2344566677777889999999999999999999884
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=7.5e-36 Score=260.89 Aligned_cols=193 Identities=26% Similarity=0.410 Sum_probs=144.9
Q ss_pred CCCceEEEEcCCCccChHHHHHHHHH--HHhCCCeEEEEeccccccccCC-----CCceEEeccCCCCCCCccc-c----
Q 036105 3 EDRRHVVLLPYPSQGHINPLLQFAKR--LASKGVKATLATTHYTAKSMCG-----PHVGVEPISDGFDEGGYAQ-A---- 70 (198)
Q Consensus 3 ~~~~hvv~~p~p~~GH~~P~l~La~~--L~~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~lp~~~~~~~~~~-~---- 70 (198)
.++.|||++|||+|||+|||++||++ |++||++|||++|+.+++++++ ..+++..+|+|+|++ .+. .
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~-~~~~~~~~~ 84 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKD-DPRAPETLL 84 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCC-cccCHHHHH
Confidence 35689999999999999999999999 5699999999999998776643 357888888888873 211 0
Q ss_pred --------cchhhhhc-CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhccCCCccCC-CCCCCceecC
Q 036105 71 --------KNEDLFLN-FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGWLTLPV-KLEDTPLSIP 140 (198)
Q Consensus 71 --------~~~~~~l~-~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~i~vP 140 (198)
+.++++++ .++||||+|.+++|+.++|+++|||++.||+++++++++++++.....+.+. .+.++.+.+|
T Consensus 85 ~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 164 (456)
T PLN02210 85 KSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDLNQTVELP 164 (456)
T ss_pred HHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccccCCeeeCC
Confidence 01222232 5789999999999999999999999999999999999988876432111111 1112346799
Q ss_pred CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 141 GLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 141 glp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
|+|+++.+|+|..+.... ...+...+.+..+...+++||++|||+|||++++++++
T Consensus 165 gl~~~~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 220 (456)
T PLN02210 165 ALPLLEVRDLPSFMLPSG-GAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMA 220 (456)
T ss_pred CCCCCChhhCChhhhcCC-chHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHh
Confidence 999999999998765432 12222223344456678999999999999999999875
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.6e-35 Score=258.28 Aligned_cols=191 Identities=16% Similarity=0.201 Sum_probs=142.1
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEecccccccc------CC----CCceEEeccC----CC-CCCCc
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASK-GVKATLATTHYTAKSM------CG----PHVGVEPISD----GF-DEGGY 67 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~-G~~Vt~~~~~~~~~~~------~~----~~i~~~~lp~----~~-~~~~~ 67 (198)
.++||+++|||+|||+|||++|||+|+++ |+.|||++|..+..++ .. ++|+++++|+ ++ ++ +.
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~-~~ 80 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEP-DA 80 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCC-Cc
Confidence 35799999999999999999999999987 9999999988765432 11 2599999984 33 21 10
Q ss_pred cc-----------ccchhhhhc---CCCcEEEeCCCcchHHHHHHHhCCC-ceeecccchHHHHHHHhhcc--CCCccCC
Q 036105 68 AQ-----------AKNEDLFLN---FPVNCVVYDSFLPWALDVAKEYGLY-GAAFFTNSATVCNIFCRMHH--GWLTLPV 130 (198)
Q Consensus 68 ~~-----------~~~~~~~l~---~~~~~vi~D~~~~~~~~vA~~~~iP-~~~f~~~~a~~~~~~~~~~~--~~~~~~~ 130 (198)
+. ...++++++ .+++|||+|+|++|+.+||+++||| +++|++++|+.++++++++. +....+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~ 160 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEY 160 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccccccc
Confidence 00 111233343 3679999999999999999999999 69999999998888888753 2111111
Q ss_pred CCCCCceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 131 KLEDTPLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 131 ~~~~~~i~vPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
.+.++++.+||+|+++.+|+|..+.+... . .+..+.+..++..+|+|||+|||+|||++++++++
T Consensus 161 ~~~~~~~~vPg~p~l~~~dlp~~~~~~~~-~-~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~ 225 (470)
T PLN03015 161 VDIKEPLKIPGCKPVGPKELMETMLDRSD-Q-QYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALR 225 (470)
T ss_pred CCCCCeeeCCCCCCCChHHCCHhhcCCCc-H-HHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 11124578999999999999976654322 2 23445566677889999999999999999999885
No 14
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.3e-35 Score=256.42 Aligned_cols=185 Identities=23% Similarity=0.331 Sum_probs=138.3
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC----C-C--ceEEecc--CCCCCCCccccc
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG----P-H--VGVEPIS--DGFDEGGYAQAK 71 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~----~-~--i~~~~lp--~~~~~~~~~~~~ 71 (198)
|...++|||++|||+|||+|||++|||+|++||++|||++|+.+.+++.+ + + ++++++| +|+|+ +.++..
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~-g~e~~~ 79 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPV-GTETVS 79 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCC-cccccc
Confidence 78899999999999999999999999999999999999999998765432 2 2 6667777 78876 322211
Q ss_pred -------------------chhhhhc-CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhccCCCccCCC
Q 036105 72 -------------------NEDLFLN-FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGWLTLPVK 131 (198)
Q Consensus 72 -------------------~~~~~l~-~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~~~~~~~~~ 131 (198)
.++++++ .+++|||+|+ ++|+.++|+++|||++.||+++|+.++++++ +.+..
T Consensus 80 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~~~----- 152 (453)
T PLN02764 80 EIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGGEL----- 152 (453)
T ss_pred cCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccccC-----
Confidence 1122233 3679999996 9999999999999999999999999988763 21111
Q ss_pred CCCCceecCCCCC----CCCCCCCCCCC--CCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 132 LEDTPLSIPGLPS----LNFIDLPTFVK--FPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 132 ~~~~~i~vPglp~----l~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
. ..+||+|. ++.+|+|.... .....+.+..++.+..+..++++|||+|||+|||++++++++
T Consensus 153 --~--~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~ 220 (453)
T PLN02764 153 --G--VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIE 220 (453)
T ss_pred --C--CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHH
Confidence 1 12589983 78889987422 111112233344444467788999999999999999999985
No 15
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.1e-35 Score=258.03 Aligned_cols=189 Identities=22% Similarity=0.292 Sum_probs=143.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEecccccccc-------C------CCCceEEeccCCCCCCC-cc
Q 036105 5 RRHVVLLPYPSQGHINPLLQFAKRLASKG--VKATLATTHYTAKSM-------C------GPHVGVEPISDGFDEGG-YA 68 (198)
Q Consensus 5 ~~hvv~~p~p~~GH~~P~l~La~~L~~~G--~~Vt~~~~~~~~~~~-------~------~~~i~~~~lp~~~~~~~-~~ 68 (198)
|.|||++|||+|||++||++|||+|++|| +.|||++|+.+++++ . .++|+++.+|++.++.. ..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 81 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDP 81 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccch
Confidence 68999999999999999999999999998 999999999875421 1 13599999997654211 00
Q ss_pred c--------ccchhhhhc-----------CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhccCC----
Q 036105 69 Q--------AKNEDLFLN-----------FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGW---- 125 (198)
Q Consensus 69 ~--------~~~~~~~l~-----------~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~~~---- 125 (198)
. ...+++.++ .+++|||+|+|++|+.+||+++|||++.||+++|++++++++++...
T Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~~~ 161 (481)
T PLN02554 82 TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDEKK 161 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccccc
Confidence 0 011112221 13589999999999999999999999999999999999998876321
Q ss_pred CccC-CCCCCCceecCCCC-CCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 126 LTLP-VKLEDTPLSIPGLP-SLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 126 ~~~~-~~~~~~~i~vPglp-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
.+.+ ..+.++.+.+||++ +++.+|+|..+.+. .+.+.+.+..++..+|+||++|||+|||+++++++.
T Consensus 162 ~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~----~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~ 231 (481)
T PLN02554 162 YDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK----EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFS 231 (481)
T ss_pred cCccccCCCCceeECCCCCCCCCHHHCCCcccCH----HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 1111 11212456799995 89999999866432 234566777788889999999999999999999875
No 16
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.5e-34 Score=251.93 Aligned_cols=191 Identities=27% Similarity=0.427 Sum_probs=147.5
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC----CCceEEeccCCCCCCCcccccc-----
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSMCG----PHVGVEPISDGFDEGGYAQAKN----- 72 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~--G~~Vt~~~~~~~~~~~~~----~~i~~~~lp~~~~~~~~~~~~~----- 72 (198)
.++||+++|||++||+|||++||++|++| |++|||++|+.+.+++++ ++|+|+.+|+++|++ .+...+
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~-~~~~~~~~~~~ 87 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSE-LVRAADFPGFL 87 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCc-cccccCHHHHH
Confidence 47899999999999999999999999999 999999999998876654 479999999877652 211111
Q ss_pred ----------hhhhhc---CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhcc----CCCccCCCC-CC
Q 036105 73 ----------EDLFLN---FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHH----GWLTLPVKL-ED 134 (198)
Q Consensus 73 ----------~~~~l~---~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~----~~~~~~~~~-~~ 134 (198)
++++++ .+++|||+|++++|+.++|+++|||++.||+++|+.++++.++.. +..+....+ .+
T Consensus 88 ~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (459)
T PLN02448 88 EAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELSESGE 167 (459)
T ss_pred HHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccccccC
Confidence 112222 367999999999999999999999999999999998888877642 111111110 12
Q ss_pred Cce-ecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 135 TPL-SIPGLPSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 135 ~~i-~vPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
+.+ .+||+++++.+|+|..+... .....+.+.+..++..++++|++|||+|||++++++++
T Consensus 168 ~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 229 (459)
T PLN02448 168 ERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALK 229 (459)
T ss_pred CccccCCCCCCCChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHH
Confidence 334 48999999999999876433 22334566677777888999999999999999999875
No 17
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.7e-34 Score=250.14 Aligned_cols=190 Identities=22% Similarity=0.278 Sum_probs=140.6
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEecccccc-c----cC---C--CCceEEeccCCC--CC-CCcc
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKG--VKATLATTHYTAK-S----MC---G--PHVGVEPISDGF--DE-GGYA 68 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G--~~Vt~~~~~~~~~-~----~~---~--~~i~~~~lp~~~--~~-~~~~ 68 (198)
+++|||++|||+|||+|||++|||+|+++| +.|||++|+.+.. . +. . ++|+|+.+|++. ++ ++.+
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccccc
Confidence 468999999999999999999999999998 9999999998752 1 11 1 469999999643 21 1110
Q ss_pred cc--------cc--------hhhhhc------CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhccCCC
Q 036105 69 QA--------KN--------EDLFLN------FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGWL 126 (198)
Q Consensus 69 ~~--------~~--------~~~~l~------~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~~~~ 126 (198)
+. .. +.++++ .+++|||+|+|++|+.++|+++|||+++||+++|++++++++++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~ 161 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHS 161 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccc
Confidence 00 00 112222 135899999999999999999999999999999999999888753211
Q ss_pred -c--cCCCCCCCceecCCC-CCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 127 -T--LPVKLEDTPLSIPGL-PSLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 127 -~--~~~~~~~~~i~vPgl-p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
. ....+.+..+.+||+ |+++.+|+|..+...+ . +..+.+..+..+++++||+|||+|||++++++++
T Consensus 162 ~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~--~--~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~ 232 (468)
T PLN02207 162 KDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED--G--YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFL 232 (468)
T ss_pred cccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc--c--HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHH
Confidence 1 101111244679999 6899999998764322 1 3345566677889999999999999999998874
No 18
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.2e-34 Score=252.01 Aligned_cols=190 Identities=22% Similarity=0.225 Sum_probs=136.8
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCC---eEEEEecccccc-----ccCC-----CCceEEeccCCC-CCCC---
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGV---KATLATTHYTAK-----SMCG-----PHVGVEPISDGF-DEGG--- 66 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~---~Vt~~~~~~~~~-----~~~~-----~~i~~~~lp~~~-~~~~--- 66 (198)
+++|||++|||+|||+|||++|||+|++||. .||++++..+.. .+++ ++|+|+++|++. |+++
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 5689999999999999999999999999994 567777654322 1111 469999999654 2211
Q ss_pred cccc------------cchhhhhc----------C-CCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhcc
Q 036105 67 YAQA------------KNEDLFLN----------F-PVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHH 123 (198)
Q Consensus 67 ~~~~------------~~~~~~l~----------~-~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~ 123 (198)
.+.. ..++++++ . +++|||+|+|++|+.+||+++|||+++||+++|++++++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 0000 01122222 1 46999999999999999999999999999999999999887753
Q ss_pred C--CCccC--CCCCCCceecCCCC-CCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 124 G--WLTLP--VKLEDTPLSIPGLP-SLNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 124 ~--~~~~~--~~~~~~~i~vPglp-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
. ..... ..+.++++.+||+| +++..|+|..+.+.. ..+.+.+..++..+|+|||+|||+|||++++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 236 (475)
T PLN02167 162 RHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFS 236 (475)
T ss_pred hccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHH
Confidence 1 11111 11112446799995 799999997654332 12345566677889999999999999999999884
No 19
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=5.2e-34 Score=248.23 Aligned_cols=179 Identities=22% Similarity=0.368 Sum_probs=132.1
Q ss_pred CCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEec--c--CCCCCCCcccccc-
Q 036105 3 EDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG-----PHVGVEPI--S--DGFDEGGYAQAKN- 72 (198)
Q Consensus 3 ~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~l--p--~~~~~~~~~~~~~- 72 (198)
+.++|||++|||++||++||++|||+|++||++|||++++.+.+++.+ .++++..+ | +|+|+ +.++..+
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~-g~~~~~~l 80 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPA-GAETTSDI 80 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCC-Ccccccch
Confidence 456999999999999999999999999999999999999988776543 25667654 3 57776 3322111
Q ss_pred ------------------hhhhhc-CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhccCCCccCCCCC
Q 036105 73 ------------------EDLFLN-FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGWLTLPVKLE 133 (198)
Q Consensus 73 ------------------~~~~l~-~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (198)
++++++ .++||||+| +++|+.++|+++|||++.||+++|++++ +++++.+..
T Consensus 81 ~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~------- 151 (442)
T PLN02208 81 PISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKL------- 151 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCcccc-------
Confidence 112222 478999999 5899999999999999999999998765 555442111
Q ss_pred CCceecCCCCC----CCCCCCCCCCCCCCCchHHHHHHHH-HHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 134 DTPLSIPGLPS----LNFIDLPTFVKFPESYPAYLAMKLS-QYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 134 ~~~i~vPglp~----l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
+ ..+||+|+ ++.+|+|.+ .. ....++.+.+ ..+...+|+||++|||+|||++++++++
T Consensus 152 ~--~~~pglp~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~ 214 (442)
T PLN02208 152 G--VPPPGYPSSKVLFRENDAHAL--AT--LSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYIS 214 (442)
T ss_pred C--CCCCCCCCcccccCHHHcCcc--cc--cchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHH
Confidence 1 23689985 678899964 11 1222333443 3356778999999999999999999885
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4e-34 Score=249.17 Aligned_cols=178 Identities=22% Similarity=0.319 Sum_probs=130.9
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEec--c--CCCCCCCccccc
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG-----PHVGVEPI--S--DGFDEGGYAQAK 71 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~l--p--~~~~~~~~~~~~ 71 (198)
|++ ++|||++|||+|||+|||++|||+|+++|++|||++|+.++.++.+ ++|+|+.+ | +|+|++ .+...
T Consensus 1 ~~~-~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g-~e~~~ 78 (446)
T PLN00414 1 MGS-KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFG-AETAS 78 (446)
T ss_pred CCC-CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCc-ccccc
Confidence 444 4899999999999999999999999999999999999988766642 35888555 4 678763 22211
Q ss_pred ch-------------------hhhhc-CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHHHHhhccCCCccCCC
Q 036105 72 NE-------------------DLFLN-FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGWLTLPVK 131 (198)
Q Consensus 72 ~~-------------------~~~l~-~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~~~~~~~~~~~~~~~ 131 (198)
++ +++++ .+++|||+|+ ++|+.++|+++|||++.||+++|++++++++... .
T Consensus 79 ~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~-------~ 150 (446)
T PLN00414 79 DLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA-------E 150 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh-------h
Confidence 11 11222 4789999996 8999999999999999999999999998876211 0
Q ss_pred CCCCceecCCCCC----CCCCCCC--CCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHHHhh
Q 036105 132 LEDTPLSIPGLPS----LNFIDLP--TFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRVLFL 197 (198)
Q Consensus 132 ~~~~~i~vPglp~----l~~~dlp--~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 197 (198)
.+ ..+||+|. ++.+|++ ..+. . . ...+.+..+...+|+||++|||+|||++++++++
T Consensus 151 -~~--~~~pg~p~~~~~~~~~~~~~~~~~~-~--~---~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 213 (446)
T PLN00414 151 -LG--FPPPDYPLSKVALRGHDANVCSLFA-N--S---HELFGLITKGLKNCDVVSIRTCVELEGNLCDFIE 213 (446)
T ss_pred -cC--CCCCCCCCCcCcCchhhcccchhhc-c--c---HHHHHHHHHhhccCCEEEEechHHHHHHHHHHHH
Confidence 01 13577774 4444433 3331 1 1 1234455567778999999999999999999885
No 21
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.8e-33 Score=247.68 Aligned_cols=192 Identities=23% Similarity=0.354 Sum_probs=137.9
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC---------C----CceEEecc---CCCCC
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG---------P----HVGVEPIS---DGFDE 64 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~---------~----~i~~~~lp---~~~~~ 64 (198)
||+++.|||++|+|++||+|||++||++|++||++|||++|+.+.+++++ + .+....+| +++|+
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~ 80 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE 80 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC
Confidence 89999999999999999999999999999999999999999988765432 1 33445555 46765
Q ss_pred CCccccc-----------c-h--------------hhhhc-CCCcEEEeCCCcchHHHHHHHhCCCceeecccchHHHHH
Q 036105 65 GGYAQAK-----------N-E--------------DLFLN-FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNI 117 (198)
Q Consensus 65 ~~~~~~~-----------~-~--------------~~~l~-~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a~~~~~ 117 (198)
+.+... . + +++++ .++||||+|.+++|+.++|+++|||+++||+++|+.++.
T Consensus 81 -g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~ 159 (482)
T PLN03007 81 -GCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCA 159 (482)
T ss_pred -CcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHH
Confidence 222110 1 1 11111 478999999999999999999999999999999988887
Q ss_pred HHhhccCCCccCCCCCCCceecCCCCC---CCCCCCCCCCCCCCCchHHHHHHHHHHhccCCCCEEEEcChhhhcHHHHH
Q 036105 118 FCRMHHGWLTLPVKLEDTPLSIPGLPS---LNFIDLPTFVKFPESYPAYLAMKLSQYSNLDKADWIFGNTFQELEGEVRV 194 (198)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~i~vPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 194 (198)
++++..........+.++.+.+||+|. ++..+++.. + ....+.+++........++++|++|||+|||+++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~ 235 (482)
T PLN03007 160 SYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA--D--EESPMGKFMKEVRESEVKSFGVLVNSFYELESAYAD 235 (482)
T ss_pred HHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC--C--CchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHH
Confidence 765532111000111123456899983 566777742 1 122233444455556788999999999999999998
Q ss_pred Hhh
Q 036105 195 LFL 197 (198)
Q Consensus 195 ~l~ 197 (198)
++.
T Consensus 236 ~~~ 238 (482)
T PLN03007 236 FYK 238 (482)
T ss_pred HHH
Confidence 875
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.51 E-value=1.5e-14 Score=124.34 Aligned_cols=107 Identities=19% Similarity=0.148 Sum_probs=82.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCC-----cc-----cccc---
Q 036105 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEGG-----YA-----QAKN--- 72 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-----~~-----~~~~--- 72 (198)
+||+++++|+.||++|++.||++|+++||+|+|++++.....+++.+++|+.+++..+... .+ ....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPGLLLG 80 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcCCceeeCCCCHHHHHhhhhhcccccccchHHHHH
Confidence 4899999999999999999999999999999999999777766667899988874322100 00 0000
Q ss_pred ---------------hhhhhc-CCCcEEEeCCCcchHHHHHHHhCCCceeecccch
Q 036105 73 ---------------EDLFLN-FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSA 112 (198)
Q Consensus 73 ---------------~~~~l~-~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~a 112 (198)
+.+.++ .++||||+|.+..|+..+|+++|||++.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 81 ALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccC
Confidence 001111 5899999999899999999999999999987664
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.46 E-value=1.3e-13 Score=118.45 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=77.5
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCC-Cccc--ccc---------------
Q 036105 11 LPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEG-GYAQ--AKN--------------- 72 (198)
Q Consensus 11 ~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~-~~~~--~~~--------------- 72 (198)
+.+|++||++|++.||++|.++||+||+++++.+.+.+...+++++.+++.++.. ..+. ...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAEDV 80 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999998888877889999888543221 0000 001
Q ss_pred ---hhhhhc-CCCcEEEeCCCcchHHHHHHHhCCCceeeccc
Q 036105 73 ---EDLFLN-FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTN 110 (198)
Q Consensus 73 ---~~~~l~-~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~ 110 (198)
+.+.++ .++||||+|.++.|+..+|+++|||++.+++.
T Consensus 81 ~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~ 122 (392)
T TIGR01426 81 LPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPT 122 (392)
T ss_pred HHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehh
Confidence 011111 47899999999999999999999999988654
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.30 E-value=1.5e-13 Score=121.26 Aligned_cols=119 Identities=29% Similarity=0.373 Sum_probs=83.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC-C-----------CceEEeccCCCCCCCcccc--
Q 036105 5 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG-P-----------HVGVEPISDGFDEGGYAQA-- 70 (198)
Q Consensus 5 ~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-~-----------~i~~~~lp~~~~~~~~~~~-- 70 (198)
+.|++++|+|++||++|+++||++|+++||+||++++..+...... . ..++...+++++.. .+..
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEG-WEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccc-hHHHHH
Confidence 6899999999999999999999999999999999999876654321 1 11111112233331 1100
Q ss_pred ------c--------chhh----hhc---CCCcEEEeCCCcchHHHHHHHhC-CCceeecccchHHHHHHHhhccC
Q 036105 71 ------K--------NEDL----FLN---FPVNCVVYDSFLPWALDVAKEYG-LYGAAFFTNSATVCNIFCRMHHG 124 (198)
Q Consensus 71 ------~--------~~~~----~l~---~~~~~vi~D~~~~~~~~vA~~~~-iP~~~f~~~~a~~~~~~~~~~~~ 124 (198)
. .+.+ +.. ..+||+|+|.++.|...+|.+.+ ++...+++.++...++..+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~ 159 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc
Confidence 0 0001 000 23999999999999999998885 99999999998888776655443
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.16 E-value=7.2e-12 Score=92.41 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=75.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCC--CCCCCccccc----------chh-
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDG--FDEGGYAQAK----------NED- 74 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~--~~~~~~~~~~----------~~~- 74 (198)
|++...++.||++|++.||++|.++||+|++.+.+...+.++..+++|++++.+ ++.. .+... .+.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 79 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLEFVPIPGDSRLPRS-LEPLANLRRLARLIRGLEE 79 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-EEEESSSCGGGGHH-HHHHHHHHCHHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccCceEEEecCCcCcCcc-cchhhhhhhHHHHhhhhhH
Confidence 689999999999999999999999999999999998888886789999999744 1110 00000 011
Q ss_pred --hhhc-------------CCCcEEEeCCCcchHHHHHHHhCCCceeecccc
Q 036105 75 --LFLN-------------FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 75 --~~l~-------------~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~ 111 (198)
+.+. ...++++.+.....+..+|+++|||++.....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 80 AMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred HHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 1111 246788888888888899999999999886655
No 26
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.52 E-value=8.7e-09 Score=91.34 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=29.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccC---CCCceEEeccCCC
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMC---GPHVGVEPISDGF 62 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~---~~~i~~~~lp~~~ 62 (198)
+|+++|. +.||+++|..|++.|++|||+||++++.... .+. ..+++++.++.+.
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~~~~~~~~~~~~~~~ 58 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPSKPSNIRFETYPDPY 58 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------S-CCEEEE----
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccccccceeeEEEcCCc
Confidence 6888885 8899999999999999999999999886432 222 2567777776544
No 27
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.14 E-value=1.3e-05 Score=71.68 Aligned_cols=107 Identities=14% Similarity=0.204 Sum_probs=69.6
Q ss_pred CceEEEE-cCCCccChHHHHHHHHHHHhCCCeEEEEecccccc--ccCCCCceEEecc---CCCC----CCC-cc-----
Q 036105 5 RRHVVLL-PYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK--SMCGPHVGVEPIS---DGFD----EGG-YA----- 68 (198)
Q Consensus 5 ~~hvv~~-p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~--~~~~~~i~~~~lp---~~~~----~~~-~~----- 68 (198)
..+|+++ |.++.+|.+-+..|++.|++|||+||++++..... .....+++.+.++ +... ..+ ..
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGVV 99 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhh
Confidence 3467755 99999999999999999999999999998753211 1112445544443 1000 000 00
Q ss_pred ----------------------cccchhhhhc---CCCcEEEeCCCcchHHHHHHHh-CCCceeecccc
Q 036105 69 ----------------------QAKNEDLFLN---FPVNCVVYDSFLPWALDVAKEY-GLYGAAFFTNS 111 (198)
Q Consensus 69 ----------------------~~~~~~~~l~---~~~~~vi~D~~~~~~~~vA~~~-~iP~~~f~~~~ 111 (198)
..+.+.++|+ .++|+||+|.+......+|+.+ |+|.+..++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~ 168 (507)
T PHA03392 100 ADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGY 168 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCC
Confidence 0111223342 4689999998887777899999 99987776644
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.90 E-value=8e-05 Score=61.98 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=63.3
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCC-C--CCCCccc------c------
Q 036105 7 HVVLLPY-PSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDG-F--DEGGYAQ------A------ 70 (198)
Q Consensus 7 hvv~~p~-p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~-~--~~~~~~~------~------ 70 (198)
||++... -|.||+.-.+.||++| +||+|+|++.....+.+... +....+++- . ..+..+. .
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-FPVREIPGLGPIQENGRLDRWKTVRNNIRWLAR 78 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-cCEEEccCceEeccCCccchHHHHHHHHHhhHH
Confidence 4554444 4889999999999999 69999999987554434322 444444421 1 0001110 0
Q ss_pred --cchh---hhhc-CCCcEEEeCCCcchHHHHHHHhCCCceeecccc
Q 036105 71 --KNED---LFLN-FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 71 --~~~~---~~l~-~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~ 111 (198)
..++ ++++ .++|+||+|. .+.+...|+..|+|.+.+....
T Consensus 79 ~~~~~~~~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~ 124 (318)
T PF13528_consen 79 LARRIRREIRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQY 124 (318)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehH
Confidence 0011 1222 6899999995 4456788899999999876544
No 29
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.82 E-value=1.5e-05 Score=69.39 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=49.2
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEecc
Q 036105 5 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPIS 59 (198)
Q Consensus 5 ~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp 59 (198)
+++|+++..|..||++|.+.||++|..+||+|+|++++...+.+++.++.|..++
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag~~f~~~~ 55 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAGLAFVAYP 55 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhCcceeecc
Confidence 4689999999999999999999999999999999999998888877667777665
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.81 E-value=0.00011 Score=61.63 Aligned_cols=99 Identities=9% Similarity=0.045 Sum_probs=61.7
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCce-EEeccC---CCCCCCccc---cc--------ch-
Q 036105 10 LLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVG-VEPISD---GFDEGGYAQ---AK--------NE- 73 (198)
Q Consensus 10 ~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~-~~~lp~---~~~~~~~~~---~~--------~~- 73 (198)
.+...+.||+.|.+.|+++|.+ ||+|+++++......++..++. +...|. ..+.+..+. .. .+
T Consensus 5 ~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (321)
T TIGR00661 5 SVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYGFKVFETFPGIKLKGEDGKVNIVKTLRNKEYSPKKAIR 83 (321)
T ss_pred EEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhcCcceeccCCceEeecCCcCcHHHHHHhhccccHHHHH
Confidence 3566777999999999999999 9999999877633323322332 322220 001100100 00 11
Q ss_pred --hhhhc-CCCcEEEeCCCcchHHHHHHHhCCCceeeccc
Q 036105 74 --DLFLN-FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTN 110 (198)
Q Consensus 74 --~~~l~-~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~ 110 (198)
.++++ .+||+||+| +-..+...|+.+|||.+.+.-+
T Consensus 84 ~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 84 REINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQ 122 (321)
T ss_pred HHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecc
Confidence 12222 678999999 5666778999999999966443
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.28 E-value=0.0023 Score=54.63 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=67.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc-cc-CCCCceEEeccC-CCCCC-Ccccccc----hh----
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK-SM-CGPHVGVEPISD-GFDEG-GYAQAKN----ED---- 74 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~-~~-~~~~i~~~~lp~-~~~~~-~~~~~~~----~~---- 74 (198)
+|++..-..-||+.|.+.+|+.|.++||+|+|+++..-.+ .+ +..++.+..++. ++... ....... +.
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMD 82 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHH
Confidence 5777777778999999999999999999999999765433 22 234677777752 22210 0000000 01
Q ss_pred --hhhc-CCCcEEEeCCCcch--HHHHHHHhCCCceeecccc
Q 036105 75 --LFLN-FPVNCVVYDSFLPW--ALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 75 --~~l~-~~~~~vi~D~~~~~--~~~vA~~~~iP~~~f~~~~ 111 (198)
.+++ .+||+||..-.... +.-.|.-+|+|.+..-...
T Consensus 83 ~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~ 124 (352)
T PRK12446 83 AYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM 124 (352)
T ss_pred HHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC
Confidence 1122 68999999653332 2455667799998875544
No 32
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.53 E-value=0.019 Score=48.10 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=62.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc--cCCCCceEEeccC-CCCCCC-cccc----------cc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS--MCGPHVGVEPISD-GFDEGG-YAQA----------KN 72 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~--~~~~~i~~~~lp~-~~~~~~-~~~~----------~~ 72 (198)
+|++..--..||+.....|++.|.++||+|++++....... ....++++..++- +....+ .... ..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQ 80 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHH
Confidence 35666666779999999999999999999999987543211 1113577776652 111111 1000 01
Q ss_pred hhhhhc-CCCcEEEeCCCc-ch-HHHHHHHhCCCceee
Q 036105 73 EDLFLN-FPVNCVVYDSFL-PW-ALDVAKEYGLYGAAF 107 (198)
Q Consensus 73 ~~~~l~-~~~~~vi~D~~~-~~-~~~vA~~~~iP~~~f 107 (198)
+..+++ .++|+|++.... .+ +...|+..|+|.+..
T Consensus 81 ~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 81 ARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred HHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 112222 579999987532 33 445677789998864
No 33
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=96.47 E-value=0.034 Score=47.72 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=66.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeccccccc-cCC-CCceEEeccCC-CCCCC-ccccc----------
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGV-KATLATTHYTAKS-MCG-PHVGVEPISDG-FDEGG-YAQAK---------- 71 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~-~Vt~~~~~~~~~~-~~~-~~i~~~~lp~~-~~~~~-~~~~~---------- 71 (198)
.|++.-...-||+.|-+.|++.|.++|+ +|.++.+....+. +.. .++.++.++.+ +.... .....
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVL 81 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHHHHHHHHH
Confidence 4667777788999999999999999999 5777766544433 322 57888888742 22111 00000
Q ss_pred chhhhhc-CCCcEEEeCCCcc-hHHHH-HHHhCCCceeecccchH
Q 036105 72 NEDLFLN-FPVNCVVYDSFLP-WALDV-AKEYGLYGAAFFTNSAT 113 (198)
Q Consensus 72 ~~~~~l~-~~~~~vi~D~~~~-~~~~v-A~~~~iP~~~f~~~~a~ 113 (198)
.....++ .+||+||.=..+. ....+ |..+|||.+.--+-...
T Consensus 82 ~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~ 126 (357)
T COG0707 82 QARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVP 126 (357)
T ss_pred HHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCc
Confidence 0111222 6889999854443 34444 55679999988654433
No 34
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=96.36 E-value=0.03 Score=47.32 Aligned_cols=102 Identities=19% Similarity=0.172 Sum_probs=64.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc--cccCCCCceEEeccC-CCCCCC-cccc----------c
Q 036105 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA--KSMCGPHVGVEPISD-GFDEGG-YAQA----------K 71 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~--~~~~~~~i~~~~lp~-~~~~~~-~~~~----------~ 71 (198)
++|+++.-...||..-++.|++.|.++||+|++++..... ...+..+++++.++. ++...+ .... .
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVL 81 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHH
Confidence 5688888777799999999999999999999999886532 112224677776652 221111 0000 0
Q ss_pred chhhhhc-CCCcEEEeCCC-cchHH-HHHHHhCCCceee
Q 036105 72 NEDLFLN-FPVNCVVYDSF-LPWAL-DVAKEYGLYGAAF 107 (198)
Q Consensus 72 ~~~~~l~-~~~~~vi~D~~-~~~~~-~vA~~~~iP~~~f 107 (198)
.+.++++ .++|+|++... ..|.. -.++..++|.+..
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 1112233 57999999973 34443 4455678998765
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=96.03 E-value=0.069 Score=44.64 Aligned_cols=101 Identities=23% Similarity=0.142 Sum_probs=63.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc-cc-CCCCceEEeccCC-CCCCCc-cc----------ccc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK-SM-CGPHVGVEPISDG-FDEGGY-AQ----------AKN 72 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~-~~-~~~~i~~~~lp~~-~~~~~~-~~----------~~~ 72 (198)
+|+++..-..||+....+|++.|.++||+|++++.+.... .+ ...+++++.++-. ....+. +. ...
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVFQ 81 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHHH
Confidence 6888888889999977899999999999999998643211 11 2246777766521 111010 00 001
Q ss_pred hhhhhc-CCCcEEEeCCCcc-h-HHHHHHHhCCCceee
Q 036105 73 EDLFLN-FPVNCVVYDSFLP-W-ALDVAKEYGLYGAAF 107 (198)
Q Consensus 73 ~~~~l~-~~~~~vi~D~~~~-~-~~~vA~~~~iP~~~f 107 (198)
+.++++ .++|+|++..... + +.-.++..++|.+.+
T Consensus 82 l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 82 ARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 222333 6799999975432 3 334566679999764
No 36
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.88 E-value=0.041 Score=45.42 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=57.4
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEecccccc---ccCCCCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCCC
Q 036105 14 PSQGHINPLLQFAKRLASKGVKATLATTHYTAK---SMCGPHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDSF 89 (198)
Q Consensus 14 p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~---~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~ 89 (198)
-+.||+.=.+.||+.|.++|++|+|++...... .++..++.+..+++.-.. .+....+.+.++ .++|+||.|-+
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~vV~D~y 89 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESSR--YDDALELINLLEEEKFDILIVDHY 89 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCch--hhhHHHHHHHHHhcCCCEEEEcCC
Confidence 378999999999999999999999999875332 233466777777642110 001112334444 57899999986
Q ss_pred cchH--HHHHHHhCCCceee
Q 036105 90 LPWA--LDVAKEYGLYGAAF 107 (198)
Q Consensus 90 ~~~~--~~vA~~~~iP~~~f 107 (198)
..-. ....++.+.+.+++
T Consensus 90 ~~~~~~~~~~k~~~~~l~~i 109 (279)
T TIGR03590 90 GLDADWEKLIKEFGRKILVI 109 (279)
T ss_pred CCCHHHHHHHHHhCCeEEEE
Confidence 4221 22333445555544
No 37
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.81 E-value=0.018 Score=41.91 Aligned_cols=87 Identities=15% Similarity=0.044 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCeEEEEecccccccc--CCCCceEEeccCCCCCCC---cccccchhhhh--c-CCCcEEEeCCCcc-h
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSM--CGPHVGVEPISDGFDEGG---YAQAKNEDLFL--N-FPVNCVVYDSFLP-W 92 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~--~~~~i~~~~lp~~~~~~~---~~~~~~~~~~l--~-~~~~~vi~D~~~~-~ 92 (198)
+.+|++.|+++||+|++++........ ...++++..+|-.-.... ......+..++ + .++|+|.+-.... +
T Consensus 7 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~~~~~~~~ 86 (160)
T PF13579_consen 7 VRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHAHSPTAGL 86 (160)
T ss_dssp HHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEEEHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEecccchhH
Confidence 678999999999999999975544322 125678777761111000 11122344555 3 6789888776432 3
Q ss_pred HHHHHH-HhCCCceeec
Q 036105 93 ALDVAK-EYGLYGAAFF 108 (198)
Q Consensus 93 ~~~vA~-~~~iP~~~f~ 108 (198)
...+++ +.++|.+...
T Consensus 87 ~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 87 VAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHHHHHHHHT--EEEE-
T ss_pred HHHHHHHccCCcEEEEE
Confidence 445555 7788887654
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=95.24 E-value=0.068 Score=45.50 Aligned_cols=88 Identities=16% Similarity=0.194 Sum_probs=61.9
Q ss_pred CceEEEEcC--CCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCceEEeccCCCCCC-C----cccccchh
Q 036105 5 RRHVVLLPY--PSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSMCG-PHVGVEPISDGFDEG-G----YAQAKNED 74 (198)
Q Consensus 5 ~~hvv~~p~--p~~GH~~P~l~La~~L~~~--G~~Vt~~~~~~~~~~~~~-~~i~~~~lp~~~~~~-~----~~~~~~~~ 74 (198)
.++|+++.- .+.||+-=++.+|+.|++. |++|++++.......+.. .+++++.+|.-.-.+ | .+...+++
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l~ 88 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDLE 88 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCCHH
Confidence 458888874 5679999999999999996 999999998766655554 789999998311110 1 11122233
Q ss_pred hhhc------------CCCcEEEeCCCcch
Q 036105 75 LFLN------------FPVNCVVYDSFLPW 92 (198)
Q Consensus 75 ~~l~------------~~~~~vi~D~~~~~ 92 (198)
++++ .+||.+|+|.+-..
T Consensus 89 e~~~~Rs~lil~t~~~fkPDi~IVd~~P~G 118 (400)
T COG4671 89 ETKKLRSQLILSTAETFKPDIFIVDKFPFG 118 (400)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeccccc
Confidence 3332 68999999986544
No 39
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.83 E-value=0.32 Score=39.99 Aligned_cols=94 Identities=18% Similarity=0.232 Sum_probs=53.7
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccccccCC-CCceEEeccC-CCCCC--Ccccccchhhhhc-CCCcEEEeCCCc
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG-PHVGVEPISD-GFDEG--GYAQAKNEDLFLN-FPVNCVVYDSFL 90 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-~~i~~~~lp~-~~~~~--~~~~~~~~~~~l~-~~~~~vi~D~~~ 90 (198)
.|+-+.+.+|++.|+++||+|+++++......-.. ..+++...+. ..... .......+...++ .++|+|++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdii~~~~~~ 93 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLDAFAPDVVHIATPG 93 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHHhcCCCEEEEeccc
Confidence 69999999999999999999999998654321100 1111111110 00000 0011112233333 578999876433
Q ss_pred c--h-HHHHHHHhCCCceeecc
Q 036105 91 P--W-ALDVAKEYGLYGAAFFT 109 (198)
Q Consensus 91 ~--~-~~~vA~~~~iP~~~f~~ 109 (198)
. | +...+++.++|.+....
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~ 115 (364)
T cd03814 94 PLGLAALRAARRLGIPVVTSYH 115 (364)
T ss_pred hhhHHHHHHHHHcCCCEEEEEe
Confidence 2 3 34677789999887543
No 40
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=94.83 E-value=0.067 Score=46.22 Aligned_cols=99 Identities=15% Similarity=0.061 Sum_probs=59.8
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC----CCceEEecc-CCCCCCCcccc-------c
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG----PHVGVEPIS-DGFDEGGYAQA-------K 71 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~----~~i~~~~lp-~~~~~~~~~~~-------~ 71 (198)
=-++|++..--..||+.|- .|++.|.++|.+|+|+..... .++. ..+.+..++ -|+.+ .+... .
T Consensus 4 ~~~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~~~~~~~l~v~G~~~-~l~~~~~~~~~~~ 79 (385)
T TIGR00215 4 FIPTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCEVLYSMEELSVMGLRE-VLGRLGRLLKIRK 79 (385)
T ss_pred cCCeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCccccChHHhhhccHHH-HHHHHHHHHHHHH
Confidence 3468888888888999999 999999999999999987632 1211 123333332 11111 00000 0
Q ss_pred chhhhhc-CCCcEEEe-CCCcc--h-HHHHHHHhCCCceee
Q 036105 72 NEDLFLN-FPVNCVVY-DSFLP--W-ALDVAKEYGLYGAAF 107 (198)
Q Consensus 72 ~~~~~l~-~~~~~vi~-D~~~~--~-~~~vA~~~~iP~~~f 107 (198)
...+.++ .+||+||. |. .. + ....|+.+|||.+.+
T Consensus 80 ~~~~~l~~~kPd~vi~~g~-~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 80 EVVQLAKQAKPDLLVGIDA-PDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHHhcCCCEEEEeCC-CCccHHHHHHHhhCCCCEEEE
Confidence 0112222 67888765 64 32 2 224677889999988
No 41
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=94.04 E-value=0.63 Score=39.88 Aligned_cols=86 Identities=16% Similarity=0.073 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCC--Ccccccch-----------h--hhh-c--CCCc
Q 036105 21 PLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEG--GYAQAKNE-----------D--LFL-N--FPVN 82 (198)
Q Consensus 21 P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~--~~~~~~~~-----------~--~~l-~--~~~~ 82 (198)
++-+||+.|+++||+|++++........ .+++.+.++.+-... ...-...+ + ..+ + .+||
T Consensus 12 ~~~~la~~L~~~G~~v~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd 89 (396)
T cd03818 12 QFRHLAPALAAQGHEVVFLTEPNAAPPP--GGVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVARALLALRAKGFRPD 89 (396)
T ss_pred hHHHHHHHHHHCCCEEEEEecCCCCCCC--CCeeEEEecCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3778999999999999999976553321 157777665221110 00000000 0 011 1 4689
Q ss_pred EEEeCCCcchHHHHHHHh-CCCceeec
Q 036105 83 CVVYDSFLPWALDVAKEY-GLYGAAFF 108 (198)
Q Consensus 83 ~vi~D~~~~~~~~vA~~~-~iP~~~f~ 108 (198)
.|++-....++.-+.+.+ ++|.+.+.
T Consensus 90 vi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 90 VIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred EEEECCccchhhhHHHhCCCCCEEEEE
Confidence 999987666566666665 48887643
No 42
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=93.44 E-value=0.39 Score=40.47 Aligned_cols=92 Identities=20% Similarity=0.100 Sum_probs=55.1
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccccccC----CCCceEEeccCCCCC--CCccccc-------chhhhhc-C--
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTHYTAKSMC----GPHVGVEPISDGFDE--GGYAQAK-------NEDLFLN-F-- 79 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~----~~~i~~~~lp~~~~~--~~~~~~~-------~~~~~l~-~-- 79 (198)
.|+-..+.+|++.|+++||+|+++++........ ..++.+..++..-.. ....... .+...++ .
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRREGG 100 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHhcCC
Confidence 4788899999999999999999998754432211 146666665521000 0000000 0111222 3
Q ss_pred CCcEEEeCCCc-ch-HHHHHHHhCCCceee
Q 036105 80 PVNCVVYDSFL-PW-ALDVAKEYGLYGAAF 107 (198)
Q Consensus 80 ~~~~vi~D~~~-~~-~~~vA~~~~iP~~~f 107 (198)
++|+|++.... .+ +...++.+|+|++..
T Consensus 101 ~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 101 RPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred CccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 88999887533 33 456778899998754
No 43
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=92.89 E-value=0.94 Score=36.76 Aligned_cols=101 Identities=14% Similarity=0.037 Sum_probs=60.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc-cCCCCceEEeccCCC-CCCCccc---ccchhhhhc-CCC
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS-MCGPHVGVEPISDGF-DEGGYAQ---AKNEDLFLN-FPV 81 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~-~~~~~i~~~~lp~~~-~~~~~~~---~~~~~~~l~-~~~ 81 (198)
|+++.....|+..-+.+|++.|.++|++|++++....... ....+++.+.++... ....... ...+..+++ .++
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRRGINPFKDLKALLRLYRLLRKERP 81 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEeccccccccChHhHHHHHHHHHHHHHhcCC
Confidence 5666666788999999999999999999999998765542 223567776665221 1100000 111223333 578
Q ss_pred cEEEeCCCcch-HHHHHHH-hCCCceeec
Q 036105 82 NCVVYDSFLPW-ALDVAKE-YGLYGAAFF 108 (198)
Q Consensus 82 ~~vi~D~~~~~-~~~vA~~-~~iP~~~f~ 108 (198)
|.|++.....+ ...++.+ .+.|.+.+.
T Consensus 82 dvv~~~~~~~~~~~~~~~~~~~~~~~i~~ 110 (359)
T cd03808 82 DIVHTHTPKPGILGRLAARLAGVPKVIYT 110 (359)
T ss_pred CEEEEccccchhHHHHHHHHcCCCCEEEE
Confidence 88888754432 3334444 666655554
No 44
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=92.67 E-value=0.9 Score=40.04 Aligned_cols=103 Identities=17% Similarity=-0.002 Sum_probs=56.8
Q ss_pred CCceEEEEcCC----C-ccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccC-CCCCC-C----cccccc
Q 036105 4 DRRHVVLLPYP----S-QGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISD-GFDEG-G----YAQAKN 72 (198)
Q Consensus 4 ~~~hvv~~p~p----~-~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~-~~~~~-~----~~~~~~ 72 (198)
+++||+++..+ . .|=-+=+.+|++.|.++||+|+++++...... ...+++++.+.. .++.. . +.....
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ-EFHGAKVIGSWSFPCPFYQKVPLSLALSPR 135 (465)
T ss_pred CCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc-cccCceeeccCCcCCccCCCceeeccCCHH
Confidence 56788888432 2 24346778999999999999999997643211 012333332211 01110 0 000112
Q ss_pred hhhhhc-CCCcEEEeCCC--cch-HHHHHHHhCCCceee
Q 036105 73 EDLFLN-FPVNCVVYDSF--LPW-ALDVAKEYGLYGAAF 107 (198)
Q Consensus 73 ~~~~l~-~~~~~vi~D~~--~~~-~~~vA~~~~iP~~~f 107 (198)
+...++ .++|+|.+-.. ..| +..+++..|+|.++.
T Consensus 136 l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~ 174 (465)
T PLN02871 136 IISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMS 174 (465)
T ss_pred HHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEE
Confidence 233333 67898865432 223 335678889998864
No 45
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=92.37 E-value=0.27 Score=41.81 Aligned_cols=101 Identities=10% Similarity=0.054 Sum_probs=56.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc--ccccCCCCceEEeccC-CCCCCCcc-------cccchhh
Q 036105 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT--AKSMCGPHVGVEPISD-GFDEGGYA-------QAKNEDL 75 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~--~~~~~~~~i~~~~lp~-~~~~~~~~-------~~~~~~~ 75 (198)
++|++..---.||+.|-+ +++.|.++++++.++..... .+..-...+.++.++- ++.. .+. ....+.+
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~ 79 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCESLFDMEELAVMGLVE-VLPRLPRLLKIRRRLKR 79 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCccccCHHHhhhccHHH-HHHHHHHHHHHHHHHHH
Confidence 368888888889999999 99999998777777664331 1111112233333321 1100 000 0011223
Q ss_pred hhc-CCCcEEEe-CCCcchH--HHHHHHhCCCceeec
Q 036105 76 FLN-FPVNCVVY-DSFLPWA--LDVAKEYGLYGAAFF 108 (198)
Q Consensus 76 ~l~-~~~~~vi~-D~~~~~~--~~vA~~~~iP~~~f~ 108 (198)
+++ .+||+|+. +.-..|. ...|++.|||.+.+.
T Consensus 80 ~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~ 116 (380)
T PRK00025 80 RLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYV 116 (380)
T ss_pred HHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEe
Confidence 333 67898765 4322243 345677899988763
No 46
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=92.09 E-value=1.6 Score=35.84 Aligned_cols=93 Identities=18% Similarity=-0.000 Sum_probs=54.1
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccccccC---------CCCceEEeccCCCCCC-Cc-ccccc--------hhhh
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTHYTAKSMC---------GPHVGVEPISDGFDEG-GY-AQAKN--------EDLF 76 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~---------~~~i~~~~lp~~~~~~-~~-~~~~~--------~~~~ 76 (198)
.|+-.-+..|++.|+++|++|++++......... ..++++..++...... .. ..... ....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRLLNYLSFALSALLAL 93 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHHHHhhhHHHHHHHHHH
Confidence 5999999999999999999999998764433221 1456665554211110 00 00000 0111
Q ss_pred h--cCCCcEEEeCCCcc-h---HHHHHHHhCCCceeec
Q 036105 77 L--NFPVNCVVYDSFLP-W---ALDVAKEYGLYGAAFF 108 (198)
Q Consensus 77 l--~~~~~~vi~D~~~~-~---~~~vA~~~~iP~~~f~ 108 (198)
. ..++|+|+...... + +..+++..++|.+...
T Consensus 94 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 131 (394)
T cd03794 94 LKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEV 131 (394)
T ss_pred HhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 1 25789999986221 1 2244555689988764
No 47
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=90.86 E-value=2 Score=35.09 Aligned_cols=97 Identities=13% Similarity=0.095 Sum_probs=53.8
Q ss_pred cCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCC--CceEEeccCCCCCCC---cccccchhhhhc-CCCcEEE
Q 036105 12 PYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGP--HVGVEPISDGFDEGG---YAQAKNEDLFLN-FPVNCVV 85 (198)
Q Consensus 12 p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~--~i~~~~lp~~~~~~~---~~~~~~~~~~l~-~~~~~vi 85 (198)
|....|+-.-..++++.|+++|++|+++++.......... .+............. ......+...++ ..+|+|+
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~ 89 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIILKELGPDIVH 89 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHHhhcCCCEEE
Confidence 4456799999999999999999999999876543322111 111111000000000 000111222222 5789888
Q ss_pred eCCCcch---HHHHHHHhCCCceeec
Q 036105 86 YDSFLPW---ALDVAKEYGLYGAAFF 108 (198)
Q Consensus 86 ~D~~~~~---~~~vA~~~~iP~~~f~ 108 (198)
+.....+ +..++++.++|.+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~i~~~ 115 (374)
T cd03817 90 THTPFSLGLLGLRVARKLGIPVVATY 115 (374)
T ss_pred ECCchhhhhHHHHHHHHcCCCEEEEe
Confidence 8754322 3467788899987643
No 48
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=90.70 E-value=1.2 Score=30.06 Aligned_cols=78 Identities=22% Similarity=0.186 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCCC---------cc
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDSF---------LP 91 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~---------~~ 91 (198)
++.+++.|++.|++| +.|+...+.++..++...++-..+.+ + ..+..+.++ .++|+||.-.. ..
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~~~Gi~~~~~~~ki~~-~---~~~i~~~i~~g~id~VIn~~~~~~~~~~~d~~ 75 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLREAGLPVKTLHPKVHG-G---ILAILDLIKNGEIDLVINTLYPLGAQPHEDGK 75 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHHCCCcceeccCCCCC-C---CHHHHHHhcCCCeEEEEECCCcCcceeccCcH
Confidence 468999999999887 46666665555566655322111111 1 122334444 67888887332 22
Q ss_pred hHHHHHHHhCCCce
Q 036105 92 WALDVAKEYGLYGA 105 (198)
Q Consensus 92 ~~~~vA~~~~iP~~ 105 (198)
+....|.+.|||.+
T Consensus 76 ~iRr~A~~~~Ip~~ 89 (90)
T smart00851 76 ALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHHHHcCCCee
Confidence 45678889999976
No 49
>PRK10307 putative glycosyl transferase; Provisional
Probab=90.62 E-value=2.6 Score=36.23 Aligned_cols=85 Identities=16% Similarity=-0.033 Sum_probs=47.6
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccc-----------cC---CCCceEEeccCCCCCC--Ccccccc--------hhhhh
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKS-----------MC---GPHVGVEPISDGFDEG--GYAQAKN--------EDLFL 77 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~-----------~~---~~~i~~~~lp~~~~~~--~~~~~~~--------~~~~l 77 (198)
+.+|++.|.++||+|+++++...... .. ..+++++.++-..+.. +...... +..++
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPSGLKRLLHLGSFALSSFFPLL 100 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999997632110 00 1466776665222210 0000000 01111
Q ss_pred c---CCCcEEEeCCCc----chHHHHHHHhCCCcee
Q 036105 78 N---FPVNCVVYDSFL----PWALDVAKEYGLYGAA 106 (198)
Q Consensus 78 ~---~~~~~vi~D~~~----~~~~~vA~~~~iP~~~ 106 (198)
+ .++|+|++-.-. ..+..+|+..|+|.+.
T Consensus 101 ~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~~~v~ 136 (412)
T PRK10307 101 AQRRWRPDRVIGVVPTLFCAPGARLLARLSGARTWL 136 (412)
T ss_pred hccCCCCCEEEEeCCcHHHHHHHHHHHHhhCCCEEE
Confidence 1 468999885422 1234567788999875
No 50
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=89.33 E-value=4.7 Score=33.19 Aligned_cols=97 Identities=9% Similarity=-0.063 Sum_probs=54.4
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeccccccccCC--CCceEEeccCCCCCCCcccccchhhh--h-cCCCcEEEeCCC
Q 036105 15 SQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG--PHVGVEPISDGFDEGGYAQAKNEDLF--L-NFPVNCVVYDSF 89 (198)
Q Consensus 15 ~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~--~~i~~~~lp~~~~~~~~~~~~~~~~~--l-~~~~~~vi~D~~ 89 (198)
..|.-.-..+|++.|.++|++|+++++......... .++++..++.............+... + ..++|.|++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~ 92 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLKKLAKKADVIHLHFP 92 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhhhccCceEEEeecccccccccccHHHHHHHHhcCCCCCEEEEecC
Confidence 568888899999999999999999998654332211 34445444321110000001111111 1 257898887764
Q ss_pred cchHH--HHHHHhCCCceeecccc
Q 036105 90 LPWAL--DVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 90 ~~~~~--~vA~~~~iP~~~f~~~~ 111 (198)
..... ......++|++..+...
T Consensus 93 ~~~~~~~~~~~~~~~~~i~~~h~~ 116 (357)
T cd03795 93 NPLADLALLLLPRKKPVVVHWHSD 116 (357)
T ss_pred cchHHHHHHHhccCceEEEEEcCh
Confidence 44322 22223588888777643
No 51
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=88.98 E-value=1.4 Score=38.37 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=42.1
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc--c-cCCCCceEEecc
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK--S-MCGPHVGVEPIS 59 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~--~-~~~~~i~~~~lp 59 (198)
++.+|+++.....|+-.=+..+|+.|+++||+||+++...... . ....+++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~ 60 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLP 60 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECC
Confidence 4567778888778888888999999999999999998653221 1 223678888775
No 52
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=86.82 E-value=6 Score=33.90 Aligned_cols=92 Identities=17% Similarity=0.072 Sum_probs=53.0
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccccc---cCCCCceEEeccC-CCCC-CCcc----cccchhhhhc-CCCcEEE
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTHYTAKS---MCGPHVGVEPISD-GFDE-GGYA----QAKNEDLFLN-FPVNCVV 85 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~---~~~~~i~~~~lp~-~~~~-~~~~----~~~~~~~~l~-~~~~~vi 85 (198)
.|--.=..+|++.|+++||+|+++++...... ....+++++.+|. .... .... ....+..+++ .++|.|-
T Consensus 14 GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~DiIh 93 (398)
T cd03796 14 GGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLLRNILIRERITIVH 93 (398)
T ss_pred ccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHHHHHHHhcCCCEEE
Confidence 35557789999999999999999997532211 1124667766652 1111 0000 0112223332 5788877
Q ss_pred eCCCc-ch---HHHHHHHhCCCceee
Q 036105 86 YDSFL-PW---ALDVAKEYGLYGAAF 107 (198)
Q Consensus 86 ~D~~~-~~---~~~vA~~~~iP~~~f 107 (198)
+-... .+ +...++..|+|.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 94 GHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred ECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 65432 22 335577889998764
No 53
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=86.51 E-value=3.4 Score=28.87 Aligned_cols=82 Identities=23% Similarity=0.107 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCCC-------
Q 036105 18 HINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDSF------- 89 (198)
Q Consensus 18 H~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~------- 89 (198)
+-.=++.+++.|.+.|+++ +.|+...+.+...++....+... .. ....+.+.++ ..+|+||.-.-
T Consensus 11 ~k~~~~~~~~~l~~~G~~l--~aT~gT~~~l~~~gi~~~~v~~~-~~----~~~~i~~~i~~~~id~vIn~~~~~~~~~~ 83 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKL--VATEGTAKYLQEAGIPVEVVNKV-SE----GRPNIVDLIKNGEIQLVINTPSGKRAIRD 83 (110)
T ss_pred cHhHHHHHHHHHHHCCCEE--EEchHHHHHHHHcCCeEEEEeec-CC----CchhHHHHHHcCCeEEEEECCCCCccCcc
Confidence 4456789999999999887 46666666555556664433210 01 1223444444 67888887321
Q ss_pred cchHHHHHHHhCCCcee
Q 036105 90 LPWALDVAKEYGLYGAA 106 (198)
Q Consensus 90 ~~~~~~vA~~~~iP~~~ 106 (198)
..+....|-++|||.++
T Consensus 84 ~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 84 GFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHHHHHHHhCCCEEe
Confidence 34677889999999983
No 54
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=86.19 E-value=1.6 Score=31.28 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=54.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccC-CCCceEEeccCCCCCCCccc--ccchhhhhc-CCCcE
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMC-GPHVGVEPISDGFDEGGYAQ--AKNEDLFLN-FPVNC 83 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~-~~~i~~~~lp~~~~~~~~~~--~~~~~~~l~-~~~~~ 83 (198)
|+++.-...+| ..++++.|.++|++|++++......... ..++.+..++.+.-. .... ...+..+++ .+||.
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~-~~~~~~~~~l~k~ik~~~~Dv 77 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRKS-PLNYIKYFRLRKIIKKEKPDV 77 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCCc-cHHHHHHHHHHHHhccCCCCE
Confidence 56666655566 5688999999999999999954432222 367888877522111 0100 112233333 57898
Q ss_pred EEeCCCcc-hH-HHHH-HHhC-CCce
Q 036105 84 VVYDSFLP-WA-LDVA-KEYG-LYGA 105 (198)
Q Consensus 84 vi~D~~~~-~~-~~vA-~~~~-iP~~ 105 (198)
|.+-...+ +. ..+| +..| +|.+
T Consensus 78 Ih~h~~~~~~~~~~l~~~~~~~~~~i 103 (139)
T PF13477_consen 78 IHCHTPSPYGLFAMLAKKLLKNKKVI 103 (139)
T ss_pred EEEecCChHHHHHHHHHHHcCCCCEE
Confidence 87665543 22 2334 3445 5555
No 55
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=86.18 E-value=3.2 Score=34.25 Aligned_cols=93 Identities=12% Similarity=-0.008 Sum_probs=53.6
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEecccccc-ccCCCCceEEeccC-CC-CCCCcccccchhhhhc-CCCcEEEeCCC-cc
Q 036105 17 GHINPLLQFAKRLASKGVKATLATTHYTAK-SMCGPHVGVEPISD-GF-DEGGYAQAKNEDLFLN-FPVNCVVYDSF-LP 91 (198)
Q Consensus 17 GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~-~~~~~~i~~~~lp~-~~-~~~~~~~~~~~~~~l~-~~~~~vi~D~~-~~ 91 (198)
|--.-..+||+.|+++||+|++++...... .+...+++++.++- +. +.........+..+++ .++|+|++... ..
T Consensus 11 G~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dii~~~~~~~~ 90 (355)
T cd03819 11 GVERGTLELARALVERGHRSLVASAGGRLVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVDIVHARSRAPA 90 (355)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCCEEEECCCchh
Confidence 444778899999999999999998753222 12224566666541 00 0000000111222333 67899888753 34
Q ss_pred hHH-HHHHHhCCCceeecc
Q 036105 92 WAL-DVAKEYGLYGAAFFT 109 (198)
Q Consensus 92 ~~~-~vA~~~~iP~~~f~~ 109 (198)
|.. ..++..++|.+..+-
T Consensus 91 ~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 91 WSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 554 345667899886554
No 56
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=85.43 E-value=12 Score=30.01 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=50.8
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccc-cccC-CCCceEEeccCCCCCC---Ccccccchhhhhc-CCCcEEEeCCC
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTHYTA-KSMC-GPHVGVEPISDGFDEG---GYAQAKNEDLFLN-FPVNCVVYDSF 89 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~-~~~~-~~~i~~~~lp~~~~~~---~~~~~~~~~~~l~-~~~~~vi~D~~ 89 (198)
.|...-+..|++.|+++|++|++++..... .... ..++++..++...... .......+..+++ .++|+|+....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~ 92 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKGEPPFYELDPKIKVIDLGDKRDSKLLARFKKLRRLRKLLKNNKPDVVISFLT 92 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCCccceeecccccccchhccccchHHHHHhhcccCCCEEEEcCc
Confidence 456677889999999999999999987654 1111 1345555443211000 0111222344444 67899888865
Q ss_pred cchHHHHHHHhCC-Cceee
Q 036105 90 LPWALDVAKEYGL-YGAAF 107 (198)
Q Consensus 90 ~~~~~~vA~~~~i-P~~~f 107 (198)
.......+...+. |.+..
T Consensus 93 ~~~~~~~~~~~~~~~~i~~ 111 (348)
T cd03820 93 SLLTFLASLGLKIVKLIVS 111 (348)
T ss_pred hHHHHHHHHhhccccEEEe
Confidence 4222222334444 65544
No 57
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=85.07 E-value=4.2 Score=33.23 Aligned_cols=79 Identities=23% Similarity=0.230 Sum_probs=50.4
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCCCcchH-------
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDSFLPWA------- 93 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~~~~~------- 93 (198)
-..|+++|...+..+++.++...-..+..+.-. ..+ +|+-....+.+|++ .++ ++|+|...+++
T Consensus 14 ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~-~~~------~G~l~~e~l~~~l~e~~i-~llIDATHPyAa~iS~Na 85 (257)
T COG2099 14 ARALAKKLAAAPVDIILSSLTGYGAKLAEQIGP-VRV------GGFLGAEGLAAFLREEGI-DLLIDATHPYAARISQNA 85 (257)
T ss_pred HHHHHHHhhccCccEEEEEcccccccchhccCC-eee------cCcCCHHHHHHHHHHcCC-CEEEECCChHHHHHHHHH
Confidence 467999999998777777665444332110000 111 12222445777887 565 77889999885
Q ss_pred HHHHHHhCCCceeec
Q 036105 94 LDVAKEYGLYGAAFF 108 (198)
Q Consensus 94 ~~vA~~~~iP~~~f~ 108 (198)
..+|++.|||++.|-
T Consensus 86 ~~aake~gipy~r~e 100 (257)
T COG2099 86 ARAAKETGIPYLRLE 100 (257)
T ss_pred HHHHHHhCCcEEEEE
Confidence 467889999999983
No 58
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=84.74 E-value=1.7 Score=37.01 Aligned_cols=39 Identities=18% Similarity=0.334 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 4 DRRHVVLLPYPSQ-GHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 4 ~~~hvv~~p~p~~-GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
++++|++++.... ||..+...|++.|.++|+.+.++...
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 4467888887766 99999999999999999987666543
No 59
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=84.19 E-value=1.2 Score=37.11 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=29.9
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 036105 13 YPSQGHINPLLQFAKRLASKGVKATLATTHYTAK 46 (198)
Q Consensus 13 ~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~ 46 (198)
--+.||+.=++.||+.|.++|+.++|++.+.+.+
T Consensus 12 ~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~ 45 (318)
T COG3980 12 EIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA 45 (318)
T ss_pred ccCcchhhhHHHHHHHHHhcCceEEEecccchhh
Confidence 3467999999999999999999999999876544
No 60
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=83.55 E-value=4.1 Score=33.67 Aligned_cols=94 Identities=11% Similarity=-0.042 Sum_probs=54.2
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEeccccccccC----CCCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCC
Q 036105 14 PSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMC----GPHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDS 88 (198)
Q Consensus 14 p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~----~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~ 88 (198)
..-|.-.-+.++++.|.++|++|++++.....+... ..++.+..++..... .......+..+++ .++|+|.+-.
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dvv~~~~ 88 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPARKKN-PLKYFKKLYKLIKKNKYDIVHVHG 88 (358)
T ss_pred CCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecCCCcc-HHHHHHHHHHHHhcCCCCEEEEeC
Confidence 456888899999999999999999999765442211 134555444311110 0000111222333 6789888754
Q ss_pred Cc-ch-HHHHHHHhCCCceeec
Q 036105 89 FL-PW-ALDVAKEYGLYGAAFF 108 (198)
Q Consensus 89 ~~-~~-~~~vA~~~~iP~~~f~ 108 (198)
.. .+ ..-+++.+++|.++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~ 110 (358)
T cd03812 89 SSASGFILLAAKKAGVKVRIAH 110 (358)
T ss_pred cchhHHHHHHHhhCCCCeEEEE
Confidence 32 23 3345666788876543
No 61
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=83.48 E-value=6.8 Score=32.04 Aligned_cols=77 Identities=22% Similarity=0.303 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccc-cCCC-CceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCCCcchH-----
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKS-MCGP-HVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDSFLPWA----- 93 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~-~~~~-~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~~~~~----- 93 (198)
-..|+++|.++|++|+..+....... +... ...++ .+ .++ ...+.++++ .+++ +|.|...+++
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~--~g-----~l~-~~~l~~~l~~~~i~-~VIDAtHPfA~~is~ 82 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVH--TG-----ALD-PQELREFLKRHSID-ILVDATHPFAAQITT 82 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEE--EC-----CCC-HHHHHHHHHhcCCC-EEEEcCCHHHHHHHH
Confidence 45789999999999988776654332 2221 12221 11 111 223666776 5676 5567777765
Q ss_pred --HHHHHHhCCCceee
Q 036105 94 --LDVAKEYGLYGAAF 107 (198)
Q Consensus 94 --~~vA~~~~iP~~~f 107 (198)
.++++++|||++-|
T Consensus 83 ~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 83 NATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHhCCcEEEE
Confidence 46788999999988
No 62
>PLN00142 sucrose synthase
Probab=83.12 E-value=6.1 Score=37.69 Aligned_cols=30 Identities=7% Similarity=-0.088 Sum_probs=23.4
Q ss_pred CCCcEEEeCCCcc-hH-HHHHHHhCCCceeec
Q 036105 79 FPVNCVVYDSFLP-WA-LDVAKEYGLYGAAFF 108 (198)
Q Consensus 79 ~~~~~vi~D~~~~-~~-~~vA~~~~iP~~~f~ 108 (198)
.+||+|.+-+..+ ++ ..+++++|||.+...
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~ 438 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIA 438 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCCEEEEc
Confidence 4689999997665 54 488999999988654
No 63
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=83.05 E-value=12 Score=30.05 Aligned_cols=95 Identities=16% Similarity=0.041 Sum_probs=53.1
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC--CCc---eEEeccCCCCCCCcccccchhhhhc-CCCcEEEeC
Q 036105 14 PSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG--PHV---GVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYD 87 (198)
Q Consensus 14 p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~--~~i---~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D 87 (198)
+..|+-.-+.+|++.|.+.|++|++++.......... ... ........... .......+..+++ .++|.|++.
T Consensus 10 ~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dii~~~ 88 (353)
T cd03811 10 GGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLR-DLLAILRLRRLLRKEKPDVVISH 88 (353)
T ss_pred cCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeeccccc-chhHHHHHHHHHHhcCCCEEEEc
Confidence 3678889999999999999999999998654432211 111 00000000000 0001112333443 578999988
Q ss_pred CC-cch-HHHHHHHhCCCceeecc
Q 036105 88 SF-LPW-ALDVAKEYGLYGAAFFT 109 (198)
Q Consensus 88 ~~-~~~-~~~vA~~~~iP~~~f~~ 109 (198)
.. ..+ ...++.+.++|.+...-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~i~~~~ 112 (353)
T cd03811 89 LTTTPNVLALLAARLGTKLIVWEH 112 (353)
T ss_pred CccchhHHHHHHhhcCCceEEEEc
Confidence 76 333 33455555788776643
No 64
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=82.80 E-value=7.9 Score=31.54 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=55.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCcccccchhhhhc-CCCcEE
Q 036105 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCV 84 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~v 84 (198)
.+|+++--..-| .+||+.|..+|+.|++.++..... ....+..++. +++....++.+|++ .++++
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~~~~~v~~-------G~l~~~~~l~~~l~~~~i~~- 68 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PADLPGPVRV-------GGFGGAEGLAAYLREEGIDL- 68 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cccCCceEEE-------CCCCCHHHHHHHHHHCCCCE-
Confidence 345555554444 468999999998887765544332 1112222221 12223455777887 66755
Q ss_pred EeCCCcchH-------HHHHHHhCCCceeec
Q 036105 85 VYDSFLPWA-------LDVAKEYGLYGAAFF 108 (198)
Q Consensus 85 i~D~~~~~~-------~~vA~~~~iP~~~f~ 108 (198)
|.|...++| .++++++|||++-|-
T Consensus 69 VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 69 VIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred EEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 569888875 467889999999885
No 65
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=82.38 E-value=1.8 Score=31.67 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=22.7
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 17 GHINPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 17 GH~~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
|=-.-+.+|++.|+++||+||+++.....
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 55577899999999999999999876443
No 66
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=81.65 E-value=6.6 Score=33.48 Aligned_cols=93 Identities=12% Similarity=0.086 Sum_probs=58.9
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccccc--cccCCCCceEEeccCCCCCCCc-----cccc---chhhhhc-CCCcEEE
Q 036105 17 GHINPLLQFAKRLASKGVKATLATTHYTA--KSMCGPHVGVEPISDGFDEGGY-----AQAK---NEDLFLN-FPVNCVV 85 (198)
Q Consensus 17 GH~~P~l~La~~L~~~G~~Vt~~~~~~~~--~~~~~~~i~~~~lp~~~~~~~~-----~~~~---~~~~~l~-~~~~~vi 85 (198)
-|+.=+-++.++|-++||+|.+.+-.... +.++.-++.+..+...- . +. .... .+-++++ .+||++|
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g-~-~~~~Kl~~~~~R~~~l~~~~~~~~pDv~i 88 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHG-D-SLYGKLLESIERQYKLLKLIKKFKPDVAI 88 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCC-C-CHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 38888999999999999999888765322 12223677777764210 1 10 0000 1111222 5789999
Q ss_pred eCCCcchHHHHHHHhCCCceeecccch
Q 036105 86 YDSFLPWALDVAKEYGLYGAAFFTNSA 112 (198)
Q Consensus 86 ~D~~~~~~~~vA~~~~iP~~~f~~~~a 112 (198)
+= ....+..+|.-+|+|.+.|.=..-
T Consensus 89 s~-~s~~a~~va~~lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 89 SF-GSPEAARVAFGLGIPSIVFNDTEH 114 (335)
T ss_pred ec-CcHHHHHHHHHhCCCeEEEecCch
Confidence 62 334567799999999999976543
No 67
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=81.37 E-value=2.2 Score=35.61 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=54.6
Q ss_pred eEEEEcCCC-ccChHHHHHHHHHHHhCCCeEEEEecccccccc-CCCCceEEeccC-CCCCCC---c--ccccchhhhhc
Q 036105 7 HVVLLPYPS-QGHINPLLQFAKRLASKGVKATLATTHYTAKSM-CGPHVGVEPISD-GFDEGG---Y--AQAKNEDLFLN 78 (198)
Q Consensus 7 hvv~~p~p~-~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~-~~~~i~~~~lp~-~~~~~~---~--~~~~~~~~~l~ 78 (198)
+|+++.+|. .|.-.-..+|++.|+++||+|++++........ ..+++.+..++- ..+... . .....+.+.++
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 81 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEYSPNIFFHEVEVPQYPLFQYPPYDLALASKIAEVAK 81 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhhccCeEEEEecccccchhhcchhHHHHHHHHHHHHh
Confidence 455555544 477788999999999999999999875422111 114455544331 111100 0 00112223333
Q ss_pred -CCCcEEEeCCCc--chHHHHHHHh----CCCceee
Q 036105 79 -FPVNCVVYDSFL--PWALDVAKEY----GLYGAAF 107 (198)
Q Consensus 79 -~~~~~vi~D~~~--~~~~~vA~~~----~iP~~~f 107 (198)
.++|.|..-... .+...++.++ |+|.+..
T Consensus 82 ~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 117 (371)
T cd04962 82 RYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTT 117 (371)
T ss_pred cCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEE
Confidence 578887765322 2233444432 7887764
No 68
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=80.61 E-value=13 Score=29.22 Aligned_cols=93 Identities=17% Similarity=0.255 Sum_probs=57.9
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc----cCC-CCceEEeccCCCCCCCcccccchhhhhc-----
Q 036105 9 VLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS----MCG-PHVGVEPISDGFDEGGYAQAKNEDLFLN----- 78 (198)
Q Consensus 9 v~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~----~~~-~~i~~~~lp~~~~~~~~~~~~~~~~~l~----- 78 (198)
+++-....|-..-+++-+++...+|-+|.++++.....- +.+ .++...... + .+..++.+.+.
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~--i-----~~~~~i~~~i~~~~~~ 80 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVV--I-----PSDTDIFDEIAALHEK 80 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccceeeeccCCccccee--c-----CChHHHHHHHHhcccC
Confidence 344555668899999999999999999999998644331 111 222222111 1 11222333332
Q ss_pred CCCcEEEeCC--Ccc----h-HHHHHHHhCCCceeec
Q 036105 79 FPVNCVVYDS--FLP----W-ALDVAKEYGLYGAAFF 108 (198)
Q Consensus 79 ~~~~~vi~D~--~~~----~-~~~vA~~~~iP~~~f~ 108 (198)
.+.+||+.|- |+. | ..++|+++|||++.+-
T Consensus 81 ~~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 81 PPVDCVLIDEAQFFDEELVYVLNELADRLGIPVICYG 117 (201)
T ss_pred CCcCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEec
Confidence 2368999995 332 2 3488999999999873
No 69
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=80.20 E-value=4 Score=30.06 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=38.5
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS 47 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~ 47 (198)
++++|++...++-+|-.-..-++..|.++|++|+++...-..+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~ 45 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEE 45 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 46789999999999999999999999999999999987654443
No 70
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=80.07 E-value=4.6 Score=28.49 Aligned_cols=81 Identities=17% Similarity=0.069 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccC--CCCCCCcccccchhhhhc-CCCcEEEeCCC-------
Q 036105 20 NPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISD--GFDEGGYAQAKNEDLFLN-FPVNCVVYDSF------- 89 (198)
Q Consensus 20 ~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~--~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~------- 89 (198)
.=++++++.|.+.|++| +.|+...+.+...++....+-. +.+. ...+.+.+.++ ..+|+||.-..
T Consensus 13 ~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~~gi~~~~v~~~~~~~~---~~~~~i~~~i~~~~idlVIn~~~~~~~~~~ 87 (116)
T cd01423 13 PELLPTAQKLSKLGYKL--YATEGTADFLLENGIPVTPVAWPSEEPQ---NDKPSLRELLAEGKIDLVINLPSNRGKRVL 87 (116)
T ss_pred hhHHHHHHHHHHCCCEE--EEccHHHHHHHHcCCCceEeeeccCCCC---CCchhHHHHHHcCCceEEEECCCCCCCccc
Confidence 34789999999999887 4666666655544554433311 1111 01133444444 67888887322
Q ss_pred --cchHHHHHHHhCCCce
Q 036105 90 --LPWALDVAKEYGLYGA 105 (198)
Q Consensus 90 --~~~~~~vA~~~~iP~~ 105 (198)
..+....|-++|||.+
T Consensus 88 ~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 88 DNDYVMRRAADDFAVPLI 105 (116)
T ss_pred cCcEeeehhhHhhCCccc
Confidence 2456688999999996
No 71
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=79.50 E-value=3.4 Score=29.20 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=32.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
+|++.+.++-.|-..+.-++..|.++|++|.+....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 488999999999999999999999999999877644
No 72
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=77.28 E-value=4 Score=35.34 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=55.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeccc-ccccc---CCCCceEEeccCCCCCCCcccccchhhhhc-CC
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASKG--VKATLATTHY-TAKSM---CGPHVGVEPISDGFDEGGYAQAKNEDLFLN-FP 80 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~G--~~Vt~~~~~~-~~~~~---~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~ 80 (198)
++-+=....|.++-...|+++|.+++ ++|.+.++.. ..+.. .++++..+.+|-+. ...+..+++ .+
T Consensus 52 ~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~-------~~~~~~~l~~~~ 124 (425)
T PRK05749 52 LIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDL-------PGAVRRFLRFWR 124 (425)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCc-------HHHHHHHHHhhC
Confidence 44555667799999999999999876 4443332211 11111 12345555565222 223556666 67
Q ss_pred CcEEEeCCCcchH--HHHHHHhCCCceeec
Q 036105 81 VNCVVYDSFLPWA--LDVAKEYGLYGAAFF 108 (198)
Q Consensus 81 ~~~vi~D~~~~~~--~~vA~~~~iP~~~f~ 108 (198)
||+++.--.-.|. ...+++.|+|.+...
T Consensus 125 Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 125 PKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred CCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 8888754333353 355678899998864
No 73
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=77.14 E-value=16 Score=35.88 Aligned_cols=91 Identities=10% Similarity=-0.055 Sum_probs=54.7
Q ss_pred cChHHHHHHHHHHHhCC--CeEEEEecccccccc------------------------CCCCceEEeccCCCCCCCcccc
Q 036105 17 GHINPLLQFAKRLASKG--VKATLATTHYTAKSM------------------------CGPHVGVEPISDGFDEGGYAQA 70 (198)
Q Consensus 17 GH~~P~l~La~~L~~~G--~~Vt~~~~~~~~~~~------------------------~~~~i~~~~lp~~~~~~~~~~~ 70 (198)
|+..=.++||++|+++| ++|.++|-....+.. ..++++++.+|.|-..... ..
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l-~K 274 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKYI-PK 274 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCCc-CH
Confidence 56667799999999998 899999975432211 0147788888754321111 11
Q ss_pred c-----------chhhhhc---------------CCCcEEEeCCCcc-h-HHHHHHHhCCCceeec
Q 036105 71 K-----------NEDLFLN---------------FPVNCVVYDSFLP-W-ALDVAKEYGLYGAAFF 108 (198)
Q Consensus 71 ~-----------~~~~~l~---------------~~~~~vi~D~~~~-~-~~~vA~~~~iP~~~f~ 108 (198)
. .+..++. ..||+|-+-+... + +..+++.+|||.+...
T Consensus 275 e~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~ 340 (1050)
T TIGR02468 275 EELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLTG 340 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEEC
Confidence 1 1111110 1378888876443 3 3477888999976543
No 74
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=76.76 E-value=16 Score=29.52 Aligned_cols=96 Identities=8% Similarity=-0.094 Sum_probs=54.2
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc---cCCCCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEe
Q 036105 11 LPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS---MCGPHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVY 86 (198)
Q Consensus 11 ~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~---~~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~ 86 (198)
-.+...|+-....+|++.|.+.|++|.+++....... +...++.++.++.............+..+++ .++|.|++
T Consensus 7 ~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~div~~ 86 (365)
T cd03807 7 TGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRRLRPDVVHT 86 (365)
T ss_pred eeccCccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHhhCCCEEEe
Confidence 3344578999999999999999999999987543322 1224677766641110000000111223333 57889887
Q ss_pred CCCcc-hHHHHHHHh--CCCcee
Q 036105 87 DSFLP-WALDVAKEY--GLYGAA 106 (198)
Q Consensus 87 D~~~~-~~~~vA~~~--~iP~~~ 106 (198)
..... +...++... +.|.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~ 109 (365)
T cd03807 87 WMYHADLYGGLAARLAGVPPVIW 109 (365)
T ss_pred ccccccHHHHHHHHhcCCCcEEE
Confidence 65433 333344443 555554
No 75
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=76.40 E-value=7.6 Score=32.03 Aligned_cols=92 Identities=15% Similarity=-0.043 Sum_probs=50.3
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccccc--cCCCCceEEeccCCCCCCCccc-ccch---hhhh--cCCCcEEEeC
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTHYTAKS--MCGPHVGVEPISDGFDEGGYAQ-AKNE---DLFL--NFPVNCVVYD 87 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~--~~~~~i~~~~lp~~~~~~~~~~-~~~~---~~~l--~~~~~~vi~D 87 (198)
.|=-.=..+|++.|.++||+|++++....... ....+++++.++..-.. .... ...+ ...+ +..+|++...
T Consensus 15 gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (363)
T cd04955 15 GGFETFVEELAPRLVARGHEVTVYCRSPYPKQKETEYNGVRLIHIPAPEIG-GLGTIIYDILAILHALFVKRDIDHVHAL 93 (363)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcccccCCceEEEcCCCCcc-chhhhHHHHHHHHHHHhccCCeEEEEec
Confidence 34446778999999999999999998654332 11267888777621100 0000 0011 1111 1345555543
Q ss_pred CCcc-hHHHHHHHhCCCceeec
Q 036105 88 SFLP-WALDVAKEYGLYGAAFF 108 (198)
Q Consensus 88 ~~~~-~~~~vA~~~~iP~~~f~ 108 (198)
.... .+..++++.|.|.+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~ 115 (363)
T cd04955 94 GPAIAPFLPLLRLKGKKVVVNM 115 (363)
T ss_pred CccHHHHHHHHHhcCCCEEEEc
Confidence 3221 23456667788877653
No 76
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=75.79 E-value=5.4 Score=32.48 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=52.7
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccccccCC--CCceEEeccC-CCCCCCc---------cc----ccchhhhhc-
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG--PHVGVEPISD-GFDEGGY---------AQ----AKNEDLFLN- 78 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~--~~i~~~~lp~-~~~~~~~---------~~----~~~~~~~l~- 78 (198)
.|+-.-..+|++.|+++|++|+++++......... .......... ....... .. ...+..+++
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYDNPAVVAEFARLLED 94 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhccCHHHHHHHHHHHHH
Confidence 58888899999999999999999998654432211 1111111100 0000000 00 011122333
Q ss_pred CCCcEEEeCCCcchHH---HHHHHhCCCceeec
Q 036105 79 FPVNCVVYDSFLPWAL---DVAKEYGLYGAAFF 108 (198)
Q Consensus 79 ~~~~~vi~D~~~~~~~---~vA~~~~iP~~~f~ 108 (198)
.++|.|++.....+.. ..+++.++|.+...
T Consensus 95 ~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (359)
T cd03823 95 FRPDVVHFHHLQGLGVSILRAARDRGIPIVLTL 127 (359)
T ss_pred cCCCEEEECCccchHHHHHHHHHhcCCCEEEEE
Confidence 5789998887554432 45678899988754
No 77
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=74.79 E-value=8.7 Score=31.28 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCeEEEEeccccccccCC---CCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCCCcchHH----
Q 036105 23 LQFAKRLASKGVKATLATTHYTAKSMCG---PHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDSFLPWAL---- 94 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~~~~~~~~~~---~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~~~~~~---- 94 (198)
.+||+.|.++|+ |++-.+.+....... +...+. .+++.....+.+|++ .++++ |.|...+++.
T Consensus 13 r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~-------~G~lg~~~~l~~~l~~~~i~~-vIDATHPfA~~is~ 83 (249)
T PF02571_consen 13 RKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVR-------VGRLGDEEGLAEFLRENGIDA-VIDATHPFAAEISQ 83 (249)
T ss_pred HHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEE-------ECCCCCHHHHHHHHHhCCCcE-EEECCCchHHHHHH
Confidence 478999999998 555444333333221 111211 112223455777887 66755 4588888753
Q ss_pred ---HHHHHhCCCceeec
Q 036105 95 ---DVAKEYGLYGAAFF 108 (198)
Q Consensus 95 ---~vA~~~~iP~~~f~ 108 (198)
++++++|||++-|-
T Consensus 84 na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 84 NAIEACRELGIPYLRFE 100 (249)
T ss_pred HHHHHHhhcCcceEEEE
Confidence 56788999999884
No 78
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=74.29 E-value=39 Score=32.31 Aligned_cols=101 Identities=13% Similarity=0.114 Sum_probs=59.1
Q ss_pred ceEEEEcCCC-------------ccChHHHHHHHHH--------HHhCCC----eEEEEecccccc-------ccCC---
Q 036105 6 RHVVLLPYPS-------------QGHINPLLQFAKR--------LASKGV----KATLATTHYTAK-------SMCG--- 50 (198)
Q Consensus 6 ~hvv~~p~p~-------------~GH~~P~l~La~~--------L~~~G~----~Vt~~~~~~~~~-------~~~~--- 50 (198)
.+|+++..-+ .|+..=.++||++ |+++|+ +|+++|-..... .++.
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~ 335 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVYG 335 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccccC
Confidence 4677765544 5777777888886 568899 777988643221 1111
Q ss_pred -CCceEEeccCCCCCC----Ccccccc-----------hhhhhc----CCCcEEEeCCCcc-h-HHHHHHHhCCCcee
Q 036105 51 -PHVGVEPISDGFDEG----GYAQAKN-----------EDLFLN----FPVNCVVYDSFLP-W-ALDVAKEYGLYGAA 106 (198)
Q Consensus 51 -~~i~~~~lp~~~~~~----~~~~~~~-----------~~~~l~----~~~~~vi~D~~~~-~-~~~vA~~~~iP~~~ 106 (198)
++.+++.+|-|-... ..-+..+ +.+.+. .+||+|++-+..+ + +..+|+++|||.+.
T Consensus 336 ~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~v~ 413 (784)
T TIGR02470 336 TEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQCT 413 (784)
T ss_pred CCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCEEE
Confidence 577777777432210 0001111 111111 3689999987554 4 44788899999553
No 79
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=73.03 E-value=12 Score=30.50 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEeccC------CCCCCCcccccchhhhhc-CCCcEEEeCC-
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCG-----PHVGVEPISD------GFDEGGYAQAKNEDLFLN-FPVNCVVYDS- 88 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~lp~------~~~~~~~~~~~~~~~~l~-~~~~~vi~D~- 88 (198)
+-.|++.|. .+.+|+++.+..+.+-... ..+++..+.. |-|.+ + -.-.+..+++ .+||+||+-.
T Consensus 16 i~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~~~~av~GTPaD-C-V~lal~~l~~~~~pDLVvSGIN 92 (252)
T COG0496 16 IRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDNGAYAVNGTPAD-C-VILGLNELLKEPRPDLVVSGIN 92 (252)
T ss_pred HHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEeccceEEecCChHH-H-HHHHHHHhccCCCCCEEEeCcc
Confidence 445777777 8999999999877664321 1233333321 22321 0 0112345554 3488888743
Q ss_pred ---------CcchHH---HHHHHhCCCceeeccc
Q 036105 89 ---------FLPWAL---DVAKEYGLYGAAFFTN 110 (198)
Q Consensus 89 ---------~~~~~~---~vA~~~~iP~~~f~~~ 110 (198)
..+.+. -=|.-+|||.+.++-.
T Consensus 93 ~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 93 AGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred CCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 333332 3355679999998755
No 80
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=72.65 E-value=22 Score=29.15 Aligned_cols=88 Identities=11% Similarity=0.057 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEecc-C-CCCCCCccccc------chhhhhcCCCcEEEeC-
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCG-----PHVGVEPIS-D-GFDEGGYAQAK------NEDLFLNFPVNCVVYD- 87 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~lp-~-~~~~~~~~~~~------~~~~~l~~~~~~vi~D- 87 (198)
+..|++.|.+.| +|+++.+....+.... ..+++..+. + +...-....++ .+..++..+||+||+-
T Consensus 21 i~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV~lal~~~~~~~pDLVvSGI 99 (257)
T PRK13932 21 IHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCIKVALSHILPEKPDLIVSGI 99 (257)
T ss_pred HHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHHHHHHHhhcCCCCCEEEECC
Confidence 567888888878 7999988766554321 235555443 1 11000001111 1233343568888874
Q ss_pred ---------CCcchH---HHHHHHhCCCceeeccc
Q 036105 88 ---------SFLPWA---LDVAKEYGLYGAAFFTN 110 (198)
Q Consensus 88 ---------~~~~~~---~~vA~~~~iP~~~f~~~ 110 (198)
.+.+.+ .--|.-+|||.+.++..
T Consensus 100 N~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~ 134 (257)
T PRK13932 100 NYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLT 134 (257)
T ss_pred cCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcc
Confidence 333333 34456679999999863
No 81
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=71.42 E-value=7.4 Score=31.68 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=27.3
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 15 SQGHINPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 15 ~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
..|+..-..+|++.|+++|++|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAGG 43 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 5699999999999999999999999986543
No 82
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=69.56 E-value=25 Score=28.86 Aligned_cols=86 Identities=9% Similarity=0.004 Sum_probs=48.6
Q ss_pred HHHHHHHHHhC---CCeEEEEeccccccccCC-----CCceEEeccC------CCCCCCcccccchhhhhc-CCCcEEEe
Q 036105 22 LLQFAKRLASK---GVKATLATTHYTAKSMCG-----PHVGVEPISD------GFDEGGYAQAKNEDLFLN-FPVNCVVY 86 (198)
Q Consensus 22 ~l~La~~L~~~---G~~Vt~~~~~~~~~~~~~-----~~i~~~~lp~------~~~~~~~~~~~~~~~~l~-~~~~~vi~ 86 (198)
+..|++.|.+. |++|+++.+....+.... ..+++..+.+ |-|.+ + -.-.+..++. .+||+||+
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~~yav~GTPaD-C-V~lal~~~~~~~~pDlVvS 93 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPRRFAAEGSPAD-C-VLAALYDVMKDAPPDLVLS 93 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCCeEEEcCchHH-H-HHHHHHHhcCCCCCCEEEE
Confidence 44567777663 369999998766554321 2355555542 11211 0 0112334454 57899987
Q ss_pred ----------CCCcchHH---HHHHHhCCCceeecc
Q 036105 87 ----------DSFLPWAL---DVAKEYGLYGAAFFT 109 (198)
Q Consensus 87 ----------D~~~~~~~---~vA~~~~iP~~~f~~ 109 (198)
|.+.+.+. --|.-+|||.+.++.
T Consensus 94 GIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 94 GVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 44444433 345567999999985
No 83
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=69.28 E-value=9.7 Score=32.42 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=54.6
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEecccccccc---C-CCCceEEeccCCC-CCCCcccc---------cchhhhhc--
Q 036105 15 SQGHINPLLQFAKRLASKGVKATLATTHYTAKSM---C-GPHVGVEPISDGF-DEGGYAQA---------KNEDLFLN-- 78 (198)
Q Consensus 15 ~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~---~-~~~i~~~~lp~~~-~~~~~~~~---------~~~~~~l~-- 78 (198)
..|--.=..+||+.|+++||+|+++++......- . ..++++..++.+- ...+.... .-+..+++
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHE 98 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4577788999999999999999999975432211 1 1567777664211 10000000 00112222
Q ss_pred -CCCcEEEeCCCc-ch-HHHHHHHhCCCceeecc
Q 036105 79 -FPVNCVVYDSFL-PW-ALDVAKEYGLYGAAFFT 109 (198)
Q Consensus 79 -~~~~~vi~D~~~-~~-~~~vA~~~~iP~~~f~~ 109 (198)
.++|.|-+-... .| +..+++.+++|.+..+-
T Consensus 99 ~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h 132 (405)
T TIGR03449 99 PGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAH 132 (405)
T ss_pred CCCCCeEEechHHHHHHHHHHHHhcCCCEEEecc
Confidence 368888665432 23 33556678999876554
No 84
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=69.18 E-value=36 Score=27.66 Aligned_cols=87 Identities=11% Similarity=0.007 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEecc--CCCCCCCccccc------chhhhhcCCCcEEEeCC
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCG-----PHVGVEPIS--DGFDEGGYAQAK------NEDLFLNFPVNCVVYDS 88 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~lp--~~~~~~~~~~~~------~~~~~l~~~~~~vi~D~ 88 (198)
+..|++.|.+.| +|+++.+....+.... ..+++..++ ++...-..+.++ .+..++..+||+||+-.
T Consensus 16 i~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPaDcv~~gl~~l~~~~pDLVvSGi 94 (244)
T TIGR00087 16 IRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPTDCVILGINELMPEVPDLVISGI 94 (244)
T ss_pred HHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHHHHHHHHHHHhccCCCCeEEecc
Confidence 567888888888 8999998776654322 335555544 111000001111 12233335678888743
Q ss_pred ----------Ccch---HHHHHHHhCCCceeecc
Q 036105 89 ----------FLPW---ALDVAKEYGLYGAAFFT 109 (198)
Q Consensus 89 ----------~~~~---~~~vA~~~~iP~~~f~~ 109 (198)
+.+. +.--|.-+|||.+.++.
T Consensus 95 N~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 95 NAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred ccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 3333 23445567999999986
No 85
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=68.75 E-value=22 Score=29.00 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEeccC------CCCCCCcccccchhhhhcCCCcEEEe----
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCG-----PHVGVEPISD------GFDEGGYAQAKNEDLFLNFPVNCVVY---- 86 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~lp~------~~~~~~~~~~~~~~~~l~~~~~~vi~---- 86 (198)
+..|++.|.+. ++|+++.+....+-... ..+++..+.+ |-|.+ . -.-.+..++..+||+||+
T Consensus 16 i~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~v~GTPaD-c-V~~gl~~l~~~~pDlVvSGIN~ 92 (250)
T PRK00346 16 IRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNGFYAVDGTPTD-C-VHLALNGLLDPKPDLVVSGINH 92 (250)
T ss_pred HHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCCeEEECCcHHH-H-HHHHHHhhccCCCCEEEeCCcc
Confidence 56788888887 68999998766554321 2355555432 11110 0 001123333356788887
Q ss_pred ------CCCcchHH---HHHHHhCCCceeecc
Q 036105 87 ------DSFLPWAL---DVAKEYGLYGAAFFT 109 (198)
Q Consensus 87 ------D~~~~~~~---~vA~~~~iP~~~f~~ 109 (198)
|.+.+++. --|.-.|||.+.++-
T Consensus 93 G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 93 GANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred CCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 44444433 445567999999986
No 86
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=68.18 E-value=6.4 Score=32.41 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=25.5
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeccc
Q 036105 15 SQGHINPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 15 ~~GH~~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
..|+-....+|++.|.++||+|++++...
T Consensus 11 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 11 LGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred CCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 36888999999999999999999998643
No 87
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=68.04 E-value=9.1 Score=28.84 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=24.7
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEe
Q 036105 15 SQGHINPLLQFAKRLASKGVKATLAT 40 (198)
Q Consensus 15 ~~GH~~P~l~La~~L~~~G~~Vt~~~ 40 (198)
..|+-.....|++.|.++|++|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 67999999999999999999999998
No 88
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=67.91 E-value=9.4 Score=32.17 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=25.4
Q ss_pred eEEEE-cCCCccC-hHHHHHHHHHHHhCCCeEEEEecc
Q 036105 7 HVVLL-PYPSQGH-INPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 7 hvv~~-p~p~~GH-~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
+|+++ |....|= -.-+.+||+.|+++||+|+++++.
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 34444 3333333 345689999999999999999975
No 89
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=67.66 E-value=14 Score=25.81 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=32.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
++++...+...|-.-+..++..|.++|++|.++...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 688999999999999999999999999999988543
No 90
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=67.06 E-value=11 Score=29.30 Aligned_cols=44 Identities=11% Similarity=-0.115 Sum_probs=38.1
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS 47 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~ 47 (198)
.+.+|++.+.++-.|-....-++..|.++|++|+++...-..+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~ 126 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDT 126 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHH
Confidence 35789999999999999999999999999999999887654443
No 91
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=66.81 E-value=11 Score=31.10 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=30.8
Q ss_pred eEEEEcCC-C-ccChHHHHHHHHHHHhCCCeEEEEecccc
Q 036105 7 HVVLLPYP-S-QGHINPLLQFAKRLASKGVKATLATTHYT 44 (198)
Q Consensus 7 hvv~~p~p-~-~GH~~P~l~La~~L~~~G~~Vt~~~~~~~ 44 (198)
+|+++... . .|+-.-...+++.|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 56666543 3 58889999999999999999999997654
No 92
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=66.00 E-value=13 Score=30.21 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=47.1
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEecc-CCCCC--CCc-----ccccchhhhhc-CCCcEEEeC
Q 036105 17 GHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPIS-DGFDE--GGY-----AQAKNEDLFLN-FPVNCVVYD 87 (198)
Q Consensus 17 GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp-~~~~~--~~~-----~~~~~~~~~l~-~~~~~vi~D 87 (198)
|--.-..+|++.|.++||+|++++........ ...... ..... ... .....+..+++ .++|.|.+-
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~ 94 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASGDSKTAA-----PLVPVVPEPLRLDAPGRDRAEAEALALAERALAAGDFDIVHNH 94 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecCCCCccc-----ceeeccCCCcccccchhhHhhHHHHHHHHHHHhcCCCCEEEec
Confidence 44577899999999999999999976432211 111111 00000 000 00011222333 568887765
Q ss_pred CCcchHHHHHHHhCCCceeecc
Q 036105 88 SFLPWALDVAKEYGLYGAAFFT 109 (198)
Q Consensus 88 ~~~~~~~~vA~~~~iP~~~f~~ 109 (198)
....... .++..++|.+...-
T Consensus 95 ~~~~~~~-~~~~~~~~~v~~~h 115 (335)
T cd03802 95 SLHLPLP-FARPLPVPVVTTLH 115 (335)
T ss_pred Ccccchh-hhcccCCCEEEEec
Confidence 5443333 67778888776543
No 93
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=65.18 E-value=13 Score=29.04 Aligned_cols=41 Identities=15% Similarity=0.013 Sum_probs=35.9
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 5 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 5 ~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
+.+|++.+.++-.|-....-++..|..+|++|+++...-..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~ 122 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPP 122 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 57899999999999999999999999999999888754333
No 94
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=64.73 E-value=13 Score=28.91 Aligned_cols=77 Identities=19% Similarity=0.126 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccccccccCC--CCceEEeccCCCCCCCcccccchhhhhcCCCcEEEeCCCcc-hHHHH
Q 036105 20 NPLLQFAKRLASKGVKATLATTHYTAKSMCG--PHVGVEPISDGFDEGGYAQAKNEDLFLNFPVNCVVYDSFLP-WALDV 96 (198)
Q Consensus 20 ~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~--~~i~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~vi~D~~~~-~~~~v 96 (198)
.-.-+|+.+|+++|++||+.+.......-.. .+++.+.+| .+..+ +...|++|..+- ++...
T Consensus 21 T~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~--~~~~g-------------~~~si~yd~~sl~~al~~ 85 (185)
T PF09314_consen 21 TFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP--APKNG-------------SAESIIYDFLSLLHALRF 85 (185)
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC--CCCCC-------------chHHHHHHHHHHHHHHHH
Confidence 3445799999999999999987655432222 678888876 22211 134566776543 34434
Q ss_pred HHH--hCCCceeecccc
Q 036105 97 AKE--YGLYGAAFFTNS 111 (198)
Q Consensus 97 A~~--~~iP~~~f~~~~ 111 (198)
.++ .+-+.+.+...+
T Consensus 86 ~~~~~~~~~ii~ilg~~ 102 (185)
T PF09314_consen 86 IKQDKIKYDIILILGYG 102 (185)
T ss_pred HhhccccCCEEEEEcCC
Confidence 333 345655555544
No 95
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=63.05 E-value=54 Score=26.83 Aligned_cols=87 Identities=10% Similarity=0.081 Sum_probs=47.5
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEecc--CCCCCCCccccc------chhhhhcCCCcEEEe--
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCG-----PHVGVEPIS--DGFDEGGYAQAK------NEDLFLNFPVNCVVY-- 86 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~lp--~~~~~~~~~~~~------~~~~~l~~~~~~vi~-- 86 (198)
+..|++.|++ +++|+++.+....+.... ..+++..+. ++...-..+.++ .+..++..+||+||+
T Consensus 16 i~aL~~~l~~-~~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDcV~lal~~~~~~~pDLVvSGI 94 (253)
T PRK13935 16 IIILAEYLSE-KHEVFVVAPDKERSATGHAITIRVPLWAKKVFISERFVAYATTGTPADCVKLGYDVIMDKKVDLVISGI 94 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCceEEEeecCCCccEEEECCcHHHHHHHHHHhhccCCCCEEEeCC
Confidence 5567788865 579999998766554321 224444432 111000001111 123334456889987
Q ss_pred --------CCCcchHH---HHHHHhCCCceeecc
Q 036105 87 --------DSFLPWAL---DVAKEYGLYGAAFFT 109 (198)
Q Consensus 87 --------D~~~~~~~---~vA~~~~iP~~~f~~ 109 (198)
|.+.+.+. --|..+|||.+.++.
T Consensus 95 N~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 95 NRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred ccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 44444433 445567999999986
No 96
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=62.94 E-value=15 Score=29.09 Aligned_cols=44 Identities=11% Similarity=0.010 Sum_probs=38.0
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS 47 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~ 47 (198)
.+.+|++.+.++-.|-+...=++..|..+|++|+++...-..+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~ 130 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEK 130 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHH
Confidence 45789999999999999999999999999999999887544433
No 97
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=62.94 E-value=9.3 Score=31.33 Aligned_cols=21 Identities=14% Similarity=-0.072 Sum_probs=13.7
Q ss_pred chHHHHHHHhCCCceeecccc
Q 036105 91 PWALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 91 ~~~~~vA~~~~iP~~~f~~~~ 111 (198)
.-..-+|+++++|.++...+.
T Consensus 200 ~~~a~~Ak~~~vPv~v~~~~~ 220 (282)
T PF01008_consen 200 LQLALAAKEFNVPVYVLAESY 220 (282)
T ss_dssp HHHHHHHHHTT-EEEEE--GG
T ss_pred HHHHHHHHhhCCCEEEEcccc
Confidence 335578999999999886543
No 98
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=62.18 E-value=13 Score=31.35 Aligned_cols=103 Identities=14% Similarity=0.149 Sum_probs=65.7
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCce-EEeccCCCCCCCcccccchhhh
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSMCG-PHVG-VEPISDGFDEGGYAQAKNEDLF 76 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~--G~~Vt~~~~~~~~~~~~~-~~i~-~~~lp~~~~~~~~~~~~~~~~~ 76 (198)
|+.+..+|+++-.-+.|-+.=...+.+.|.++ +.+|++++.+.+.+-++. |.|+ ++.++.. .............+
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~-~~~~~~~~~~~~~l 79 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNK-KAGASEKIKNFFSL 79 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccc-cccHHHHHHHHHHH
Confidence 78888899999999999999999999999885 899999999877766554 5664 3334311 00000000111111
Q ss_pred ---hc-CCCcEEEeCCCcch-HHHHHHHhCCCce
Q 036105 77 ---LN-FPVNCVVYDSFLPW-ALDVAKEYGLYGA 105 (198)
Q Consensus 77 ---l~-~~~~~vi~D~~~~~-~~~vA~~~~iP~~ 105 (198)
++ .++|++| |....| ..-++...|.+..
T Consensus 80 ~~~lr~~~yD~vi-dl~~~~~s~ll~~l~~a~~r 112 (352)
T PRK10422 80 IKVLRANKYDLIV-NLTDQWMVALLVRLLNARVK 112 (352)
T ss_pred HHHHhhCCCCEEE-EcccchHHHHHHHHhCCCeE
Confidence 22 5788877 443444 3345566677653
No 99
>PRK00654 glgA glycogen synthase; Provisional
Probab=62.10 E-value=14 Score=32.64 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.0
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 17 GHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 17 GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
|.-.=.-.|++.|+++||+|+++++.
T Consensus 18 Gl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 18 GLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 44456689999999999999999975
No 100
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=61.92 E-value=63 Score=26.43 Aligned_cols=87 Identities=9% Similarity=0.056 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEecc-CC--CCCCCccccc------chhhhhcCCCcEEEe-
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCG-----PHVGVEPIS-DG--FDEGGYAQAK------NEDLFLNFPVNCVVY- 86 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~lp-~~--~~~~~~~~~~------~~~~~l~~~~~~vi~- 86 (198)
+..|++.|.+ +++|+++.+....+.... ..+++..+. ++ .+.-..+.++ .+..++..+||+||+
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV~lal~~l~~~~pDLVvSG 94 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCVRVALDKLVPDNIDMVISG 94 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHHHHHHHHhcCCCCCEEEEC
Confidence 6678888865 579999988766553321 234444443 11 0000001111 123333356889987
Q ss_pred ---------CCCcchH---HHHHHHhCCCceeecc
Q 036105 87 ---------DSFLPWA---LDVAKEYGLYGAAFFT 109 (198)
Q Consensus 87 ---------D~~~~~~---~~vA~~~~iP~~~f~~ 109 (198)
|.+.+.+ .--|.-.|||.+.++.
T Consensus 95 IN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 95 INKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred CcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 4444443 3445567999999986
No 101
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=61.91 E-value=54 Score=24.33 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCcccccchhhhhcCCCcEEEeCCCc--------chHH
Q 036105 23 LQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEGGYAQAKNEDLFLNFPVNCVVYDSFL--------PWAL 94 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~vi~D~~~--------~~~~ 94 (198)
..|++.|.++|++|+.++-......- .++++.+..+ ......+.+.++ +.|.||.=... .-..
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d-------~~d~~~~~~al~-~~d~vi~~~~~~~~~~~~~~~~~ 82 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGD-------LFDPDSVKAALK-GADAVIHAAGPPPKDVDAAKNII 82 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESC-------TTCHHHHHHHHT-TSSEEEECCHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEecCchhccc-ccccccceee-------ehhhhhhhhhhh-hcchhhhhhhhhccccccccccc
Confidence 35899999999999999865332111 3566666553 111222334343 45665554431 1123
Q ss_pred HHHHHhCCCceeecc
Q 036105 95 DVAKEYGLYGAAFFT 109 (198)
Q Consensus 95 ~vA~~~~iP~~~f~~ 109 (198)
+.+++.|++++++.+
T Consensus 83 ~a~~~~~~~~~v~~s 97 (183)
T PF13460_consen 83 EAAKKAGVKRVVYLS 97 (183)
T ss_dssp HHHHHTTSSEEEEEE
T ss_pred ccccccccccceeee
Confidence 456677888877744
No 102
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=59.52 E-value=23 Score=30.92 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=49.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEecc-CCCCCCCcccccchh---hhhc-CCC
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPIS-DGFDEGGYAQAKNED---LFLN-FPV 81 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp-~~~~~~~~~~~~~~~---~~l~-~~~ 81 (198)
+++++..+.. .+.+++.|.+.|.+|..+.+.........+.... ++ .+.. .....++. ..++ .++
T Consensus 282 kv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~~~~~~~~~~~~~--l~~~~~~---v~~~~~~~~~~~~~~~~~p 351 (416)
T cd01980 282 RVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSIPKTSLSAPDYEW--LSALGVE---VRYRKSLEDDIAAVEEYRP 351 (416)
T ss_pred eEEEECCCch-----hHHHHHHHHHcCCEEEEEecCCCChhhhHHHHHH--HHhcCCc---cccCCCHHHHHHHHhhcCC
Confidence 5656655554 5559999999999999988864322211100000 00 0000 00011221 2222 589
Q ss_pred cEEEeCCCcchHHHHHHHhCCCceee
Q 036105 82 NCVVYDSFLPWALDVAKEYGLYGAAF 107 (198)
Q Consensus 82 ~~vi~D~~~~~~~~vA~~~~iP~~~f 107 (198)
|++|... -...+|+++|||.+.+
T Consensus 352 Dl~Ig~s---~~~~~a~~~giP~~r~ 374 (416)
T cd01980 352 DLAIGTT---PLVQYAKEKGIPALYY 374 (416)
T ss_pred CEEEeCC---hhhHHHHHhCCCEEEe
Confidence 9999773 3567999999998764
No 103
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=59.28 E-value=20 Score=30.50 Aligned_cols=19 Identities=21% Similarity=-0.055 Sum_probs=15.0
Q ss_pred HHHHHHHhCCCceeecccc
Q 036105 93 ALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 93 ~~~vA~~~~iP~~~f~~~~ 111 (198)
..-+|+++|||.++..+++
T Consensus 241 lAl~Ak~~~VPfyV~a~~~ 259 (329)
T PRK06371 241 KAVLAKVNGIPFYVAAPGS 259 (329)
T ss_pred HHHHHHHcCCCEEEecccc
Confidence 4567889999999987643
No 104
>PLN02846 digalactosyldiacylglycerol synthase
Probab=59.10 E-value=18 Score=32.31 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=30.7
Q ss_pred CCCceEEEEcCCCc----cChHHHHHHHHHHHhCC-CeEEEEecc
Q 036105 3 EDRRHVVLLPYPSQ----GHINPLLQFAKRLASKG-VKATLATTH 42 (198)
Q Consensus 3 ~~~~hvv~~p~p~~----GH~~P~l~La~~L~~~G-~~Vt~~~~~ 42 (198)
.+++||++|+-... |=..-.+.++..|+++| |+|+++.+.
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~ 46 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPW 46 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecC
Confidence 34589999875444 54466677788999999 799999874
No 105
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=58.77 E-value=20 Score=30.15 Aligned_cols=19 Identities=21% Similarity=-0.054 Sum_probs=15.0
Q ss_pred HHHHHHHhCCCceeecccc
Q 036105 93 ALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 93 ~~~vA~~~~iP~~~f~~~~ 111 (198)
..-+|+.+|+|.++...+.
T Consensus 223 lA~~Ak~~~vPv~V~a~s~ 241 (303)
T TIGR00524 223 LAVLAKEFRIPFFVAAPLS 241 (303)
T ss_pred HHHHHHHhCCCEEEecccc
Confidence 4567889999999887655
No 106
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=58.36 E-value=20 Score=25.46 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=33.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
+|++...++-.|-.-..-++..|..+|++|.+.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 5899999999999999999999999999999988753
No 107
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=57.38 E-value=82 Score=24.12 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=43.0
Q ss_pred hCCCeEEEEeccccccccCCCCceEEeccC--CCCCCCcccccchh--------------hhhc--CCCcEEEeCCCcch
Q 036105 31 SKGVKATLATTHYTAKSMCGPHVGVEPISD--GFDEGGYAQAKNED--------------LFLN--FPVNCVVYDSFLPW 92 (198)
Q Consensus 31 ~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~--~~~~~~~~~~~~~~--------------~~l~--~~~~~vi~D~~~~~ 92 (198)
++||+|++++........ ++++.+.+.. +-..+......+++ ++.+ ..||+||.-...+.
T Consensus 1 q~gh~v~fl~~~~~~~~~--~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~GWGe 78 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP--PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPGWGE 78 (171)
T ss_pred CCCCEEEEEecCCCCCCC--CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCCcch
Confidence 479999999954433322 5777776642 11110000011111 1111 56899999876665
Q ss_pred HHHHHHHh-CCCceeec
Q 036105 93 ALDVAKEY-GLYGAAFF 108 (198)
Q Consensus 93 ~~~vA~~~-~iP~~~f~ 108 (198)
+.-+-+-+ ++|.+.|.
T Consensus 79 ~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 79 TLFLKDVFPDAPLIGYF 95 (171)
T ss_pred hhhHHHhCCCCcEEEEE
Confidence 66677777 78877763
No 108
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=57.25 E-value=21 Score=25.64 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=29.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS 47 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~ 47 (198)
||++.-..+.+=.. ..++.++|.++|++|.++.++...+-
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~ 41 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERF 41 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHH
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHH
Confidence 45555554444444 99999999999999999999865543
No 109
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=57.14 E-value=21 Score=28.07 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCccChHH-HHHHHHHHHhCCCeEEEEeccccc
Q 036105 1 MNEDRRHVVLLPYPSQGHINP-LLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P-~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
|.-+..+|++- ..+.....- ..+|+++|.++|++|.++.|+...
T Consensus 1 ~~l~~k~Illg-VTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 1 MSLKGKRIGFG-LTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCCCCCEEEEE-EcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 33344555544 344555555 699999999999999999998654
No 110
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=56.63 E-value=56 Score=24.14 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=55.7
Q ss_pred CccChHHHHHHHHHHHhC--CCeEEEEeccccccccCCC-CceEEeccCCCCCCCcccccchhhhhc-CCCcEEEe--CC
Q 036105 15 SQGHINPLLQFAKRLASK--GVKATLATTHYTAKSMCGP-HVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVY--DS 88 (198)
Q Consensus 15 ~~GH~~P~l~La~~L~~~--G~~Vt~~~~~~~~~~~~~~-~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~--D~ 88 (198)
.-+.-.-++.+++.|... |+.+ +.|....+.+... |+....+-.+ +.+| ...+.+.++ ..++.||. |.
T Consensus 12 ~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~~Gi~v~~vi~~-~~gg---~~~i~~~I~~g~i~lVInt~dp 85 (142)
T PRK05234 12 HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEATGLDVTRLLSG-PLGG---DQQIGALIAEGKIDMLIFFRDP 85 (142)
T ss_pred eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhccCCeeEEEEcC-CCCC---chhHHHHHHcCceeEEEEecCC
Confidence 445667789999999998 9884 5777777666555 7766544111 1111 123444444 67888887 42
Q ss_pred Ccc--------hHHHHHHHhCCCceeeccc
Q 036105 89 FLP--------WALDVAKEYGLYGAAFFTN 110 (198)
Q Consensus 89 ~~~--------~~~~vA~~~~iP~~~f~~~ 110 (198)
... -....|-++|||.++-..+
T Consensus 86 ~~~~~~~~D~~~IRR~Av~~~IP~~T~l~t 115 (142)
T PRK05234 86 LTAQPHDPDVKALLRLADVWNIPVATNRAT 115 (142)
T ss_pred CCCCcccchHHHHHHHHHHcCCCEEcCHHH
Confidence 221 1235688899998865443
No 111
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=55.50 E-value=12 Score=29.94 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=21.0
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccc
Q 036105 17 GHINPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 17 GH~~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
-|+..|-+.|..|.++|++|+++....
T Consensus 46 l~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 46 LFFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 367899999999999999999999874
No 112
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=55.02 E-value=70 Score=27.79 Aligned_cols=88 Identities=11% Similarity=0.076 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhC--CCeEEEEeccccccc----------cC---CCCceEEecc---CCCCCCCcccc-------cch--
Q 036105 21 PLLQFAKRLASK--GVKATLATTHYTAKS----------MC---GPHVGVEPIS---DGFDEGGYAQA-------KNE-- 73 (198)
Q Consensus 21 P~l~La~~L~~~--G~~Vt~~~~~~~~~~----------~~---~~~i~~~~lp---~~~~~~~~~~~-------~~~-- 73 (198)
=+.+.++.|.++ |+.|+++|+...+.. +. ..+++++.+. ..++......- ..+
T Consensus 19 vl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 98 (419)
T cd03806 19 VLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTYPRFTLLGQALGSMIL 98 (419)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccCCceeeHHHHHHHHHH
Confidence 456778888877 899999999865532 11 1345544431 22222111110 001
Q ss_pred --hhhhcCCCcEEEeCCCcchHHHHHHHh-CCCceeec
Q 036105 74 --DLFLNFPVNCVVYDSFLPWALDVAKEY-GLYGAAFF 108 (198)
Q Consensus 74 --~~~l~~~~~~vi~D~~~~~~~~vA~~~-~iP~~~f~ 108 (198)
..+.+.+||++|.+...+++..+++.+ +.|.+.+.
T Consensus 99 ~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~ 136 (419)
T cd03806 99 GLEALLKLVPDIFIDTMGYPFTYPLVRLLGGCPVGAYV 136 (419)
T ss_pred HHHHHHhcCCCEEEEcCCcccHHHHHHHhcCCeEEEEe
Confidence 111114689999888777777777764 67877763
No 113
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=55.01 E-value=28 Score=22.85 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=29.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 036105 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLAT 40 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~ 40 (198)
.-+|++--....|..=+-++|+.|+++|+.|...-
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 45777777788999999999999999999876543
No 114
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=54.72 E-value=93 Score=25.69 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=47.5
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEeccC-CCCCCCccccc------chhhhhcCCCcEEEe---
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCG-----PHVGVEPISD-GFDEGGYAQAK------NEDLFLNFPVNCVVY--- 86 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~lp~-~~~~~~~~~~~------~~~~~l~~~~~~vi~--- 86 (198)
+..|++.|...| +|+++.+....+.... ..++...+.. +.+.-..+.++ .+..+ ..+||+||+
T Consensus 16 i~aL~~al~~~g-~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~~~y~v~GTPaDCV~lal~~l-~~~pDLViSGIN 93 (266)
T PRK13934 16 LRLLYEFVSPLG-EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGFKVYATSGTPSDTIYLATYGL-GRKYDLVLSGIN 93 (266)
T ss_pred HHHHHHHHHhCC-cEEEEccCCCCccccccccCCCCcEEEEeccCCcceEEeCCCHHHHHHHHHHhc-cCCCCeEEecCc
Confidence 567888898887 8999988766554321 2344444431 11100001111 11122 356889987
Q ss_pred -------C-CCcchHH---HHHHHhCCCceeecc
Q 036105 87 -------D-SFLPWAL---DVAKEYGLYGAAFFT 109 (198)
Q Consensus 87 -------D-~~~~~~~---~vA~~~~iP~~~f~~ 109 (198)
| ...+.+. --|.-+|||.+.++.
T Consensus 94 ~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 94 LGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred cCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 4 3334333 345567999999986
No 115
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=54.25 E-value=10 Score=33.30 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=34.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSM 48 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~ 48 (198)
|++=-=|+.|--.=+|+++..|+++| +|-+++.+....++
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 45556789999999999999999999 99999998877665
No 116
>CHL00194 ycf39 Ycf39; Provisional
Probab=53.66 E-value=77 Score=26.17 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 036105 23 LQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~~ 42 (198)
.+|+++|.++||+|+.++-.
T Consensus 14 ~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 14 RQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred HHHHHHHHHCCCeEEEEEcC
Confidence 45788999999999988743
No 117
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=53.35 E-value=28 Score=28.82 Aligned_cols=19 Identities=5% Similarity=-0.223 Sum_probs=14.7
Q ss_pred HHHHHHHhCCCceeecccc
Q 036105 93 ALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 93 ~~~vA~~~~iP~~~f~~~~ 111 (198)
..-+|+++|+|.++...+.
T Consensus 203 lA~~Ak~~~vPfyV~a~~~ 221 (275)
T PRK08335 203 LALACHDNGVPFYVAAETF 221 (275)
T ss_pred HHHHHHHcCCCEEEECccc
Confidence 4567889999999976554
No 118
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=53.33 E-value=19 Score=32.47 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCceEEecc
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPIS 59 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp 59 (198)
+..|++.|.+.|++| +.|....+.++..+|.+..+.
T Consensus 13 iv~lAk~L~~lGfeI--iATgGTak~L~e~GI~v~~Vs 48 (511)
T TIGR00355 13 IVEFAQGLVERGVEL--LSTGGTAKLLAEAGVPVTEVS 48 (511)
T ss_pred HHHHHHHHHHCCCEE--EEechHHHHHHHCCCeEEEee
Confidence 578999999999887 577777777766677766654
No 119
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=53.28 E-value=22 Score=29.62 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=31.3
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
|.+++++|.++-..+.| .-+|.+|++.|++|+++.-..
T Consensus 1 ~~~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 77888899999777777 346889999999999998653
No 120
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=52.88 E-value=25 Score=28.19 Aligned_cols=95 Identities=16% Similarity=-0.005 Sum_probs=53.4
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccccccCC--CCceEEecc-CCCCCCCc---ccccchhhhhc-CCCcEEEeCC
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG--PHVGVEPIS-DGFDEGGY---AQAKNEDLFLN-FPVNCVVYDS 88 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~--~~i~~~~lp-~~~~~~~~---~~~~~~~~~l~-~~~~~vi~D~ 88 (198)
.|+-.-+..|++.|.+.|++|++++.......... ......... ........ .....+..+++ .++|.|+...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~ 93 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRLLRRERFDVVHAHD 93 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHHhhhcCCcEEEEec
Confidence 78999999999999999999999998654332111 000000000 00000000 00011122222 5788888887
Q ss_pred CcchHH--HHHHHhCCCceeeccc
Q 036105 89 FLPWAL--DVAKEYGLYGAAFFTN 110 (198)
Q Consensus 89 ~~~~~~--~vA~~~~iP~~~f~~~ 110 (198)
...+.. ..+...++|.+...-.
T Consensus 94 ~~~~~~~~~~~~~~~~~~i~~~h~ 117 (374)
T cd03801 94 WLALLAAALAARLLGIPLVLTVHG 117 (374)
T ss_pred hhHHHHHHHHHHhcCCcEEEEecc
Confidence 665433 4677789998876543
No 121
>PLN02891 IMP cyclohydrolase
Probab=52.25 E-value=17 Score=32.89 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccC--CCCC
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISD--GFDE 64 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~--~~~~ 64 (198)
+.+||+.|.++|++ +++|....+.++..+|.+..+.+ |+|+
T Consensus 35 i~~fAk~L~~~gve--IiSTgGTak~L~e~Gi~v~~Vsd~TgfPE 77 (547)
T PLN02891 35 LALLANGLQELGYT--IVSTGGTASALEAAGVSVTKVEELTNFPE 77 (547)
T ss_pred HHHHHHHHHHCCCE--EEEcchHHHHHHHcCCceeeHHhccCCch
Confidence 67899999998754 67888888777767888887764 5555
No 122
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=51.83 E-value=33 Score=29.28 Aligned_cols=19 Identities=21% Similarity=-0.059 Sum_probs=15.1
Q ss_pred HHHHHHHhCCCceeecccc
Q 036105 93 ALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 93 ~~~vA~~~~iP~~~f~~~~ 111 (198)
..-+|+++|+|.++..++.
T Consensus 251 lA~~Ak~~~vPfyV~a~~~ 269 (331)
T TIGR00512 251 LAVLAKHHGVPFYVAAPTS 269 (331)
T ss_pred HHHHHHHhCCCEEEecccc
Confidence 4567889999999987655
No 123
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.66 E-value=30 Score=25.36 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=27.8
Q ss_pred EEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 8 VVLLPYPSQ-GHINPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 8 vv~~p~p~~-GH~~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
+|++-.|-. -.+...+-++.+|..+|++||+..++...
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~ 44 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAAL 44 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhh
Confidence 444555544 34556788999999999999999987443
No 124
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=51.35 E-value=25 Score=31.75 Aligned_cols=43 Identities=37% Similarity=0.508 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccC--CCCC
Q 036105 20 NPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISD--GFDE 64 (198)
Q Consensus 20 ~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~--~~~~ 64 (198)
.=+..||+.|.+.|++| +.|....+.++..+|.+..+.+ |+|+
T Consensus 15 ~~iv~lAk~L~~lGfeI--~AT~GTak~L~e~GI~v~~V~k~TgfpE 59 (513)
T PRK00881 15 TGIVEFAKALVELGVEI--LSTGGTAKLLAEAGIPVTEVSDVTGFPE 59 (513)
T ss_pred ccHHHHHHHHHHCCCEE--EEcchHHHHHHHCCCeeEEeecccCCch
Confidence 34678999999999887 5777777777666776666542 4444
No 125
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=50.71 E-value=29 Score=28.40 Aligned_cols=20 Identities=5% Similarity=-0.454 Sum_probs=14.4
Q ss_pred cchHHHHHHHhCCCceeecc
Q 036105 90 LPWALDVAKEYGLYGAAFFT 109 (198)
Q Consensus 90 ~~~~~~vA~~~~iP~~~f~~ 109 (198)
..-..-.|+++++|.++...
T Consensus 174 T~~~Al~A~~~~vPv~V~~~ 193 (253)
T PRK06372 174 TFPLALCARYLKKPFYSLTI 193 (253)
T ss_pred HHHHHHHHHHcCCCEEEEee
Confidence 33355778999999998543
No 126
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=50.16 E-value=1.5e+02 Score=24.59 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCCeEEEEecccccccc--------CC---CCceEEeccC-CCCCCC-cc---cc--cch-hhhhc-CCCc
Q 036105 23 LQFAKRLASKGVKATLATTHYTAKSM--------CG---PHVGVEPISD-GFDEGG-YA---QA--KNE-DLFLN-FPVN 82 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~~~~~~~~--------~~---~~i~~~~lp~-~~~~~~-~~---~~--~~~-~~~l~-~~~~ 82 (198)
+.|++.|+++|++|..+..+.....+ .. .+.+.+-+|- +...++ .. +. ..+ +++++ .+..
T Consensus 14 ~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~ 93 (287)
T TIGR02853 14 LELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKGH 93 (287)
T ss_pred HHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCccccHHHHHhcCCC
Confidence 67999999999999999876321111 00 2344444441 111111 10 11 112 34554 3445
Q ss_pred EEEeCCCcchHH-HHHHHhCCCce
Q 036105 83 CVVYDSFLPWAL-DVAKEYGLYGA 105 (198)
Q Consensus 83 ~vi~D~~~~~~~-~vA~~~~iP~~ 105 (198)
|++.=-....-. ..|++.||+++
T Consensus 94 ~~~~~G~~~~~l~~~a~~~gi~v~ 117 (287)
T TIGR02853 94 CTIYVGISNPYLEQLAADAGVKLI 117 (287)
T ss_pred CEEEEecCCHHHHHHHHHCCCeEE
Confidence 655544444444 48899999988
No 127
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=49.88 E-value=30 Score=30.41 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=26.7
Q ss_pred eEEEEcCC------CccChHHHHHHHHHHHhCCCeEEEEeccc
Q 036105 7 HVVLLPYP------SQGHINPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 7 hvv~~p~p------~~GH~~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
||+++.+= ..|=-.=.-.|++.|+++||+|.++++..
T Consensus 2 ~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 2 RVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred eEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 56665532 22334556899999999999999999753
No 128
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=49.76 E-value=40 Score=29.08 Aligned_cols=19 Identities=26% Similarity=0.002 Sum_probs=14.8
Q ss_pred HHHHHHHhCCCceeecccc
Q 036105 93 ALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 93 ~~~vA~~~~iP~~~f~~~~ 111 (198)
..-.|+++|||.++..+.+
T Consensus 264 lA~~Ak~~~vPfyV~Ap~~ 282 (356)
T PRK08334 264 LAVLAKEHGIPFFTVAPLS 282 (356)
T ss_pred HHHHHHHhCCCEEEEcccC
Confidence 3567899999999987544
No 129
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=49.23 E-value=36 Score=29.20 Aligned_cols=19 Identities=21% Similarity=-0.151 Sum_probs=14.9
Q ss_pred HHHHHHHhCCCceeecccc
Q 036105 93 ALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 93 ~~~vA~~~~iP~~~f~~~~ 111 (198)
..-.|+++|+|.++..++.
T Consensus 251 lAl~Ak~~~vPfyV~a~~~ 269 (344)
T PRK05720 251 LAIAAKYHGVPFYVAAPSS 269 (344)
T ss_pred HHHHHHHhCCCEEEecccc
Confidence 4467899999999976654
No 130
>PLN02275 transferase, transferring glycosyl groups
Probab=49.07 E-value=1.6e+02 Score=24.84 Aligned_cols=53 Identities=9% Similarity=0.106 Sum_probs=36.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeccccccc---cCCCCceEEecc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGV-KATLATTHYTAKS---MCGPHVGVEPIS 59 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~-~Vt~~~~~~~~~~---~~~~~i~~~~lp 59 (198)
++.++..+-.|.---|..+++.|+++|+ +||+++-...... ....+++++.+|
T Consensus 6 ~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~ 62 (371)
T PLN02275 6 RAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMV 62 (371)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECC
Confidence 3344444778888999999999999875 7999986443221 112568888776
No 131
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=48.96 E-value=24 Score=28.71 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=36.9
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 036105 5 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSM 48 (198)
Q Consensus 5 ~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~ 48 (198)
...++++--|+.|=..=...++.+|..+|++|+|++++.....+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 45688898999888888889999999889999999998666554
No 132
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=48.36 E-value=68 Score=27.08 Aligned_cols=84 Identities=13% Similarity=0.102 Sum_probs=52.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc----ccC----CCCceEEeccCCCCCCCcccccchhhhh
Q 036105 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK----SMC----GPHVGVEPISDGFDEGGYAQAKNEDLFL 77 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~----~~~----~~~i~~~~lp~~~~~~~~~~~~~~~~~l 77 (198)
.-++++-.++.|=..-...||..++.+|.+|.++..+.... ++. ..++.++..+.+..+. ......+....
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa-~~v~~~l~~~~ 193 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPA-SVAFDAIQAAK 193 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHH-HHHHHHHHHHH
Confidence 35678888899999999999999999999999998875432 111 1455555443211110 00001111222
Q ss_pred cCCCcEEEeCCCc
Q 036105 78 NFPVNCVVYDSFL 90 (198)
Q Consensus 78 ~~~~~~vi~D~~~ 90 (198)
....|+||+|.--
T Consensus 194 ~~~~D~ViIDTaG 206 (318)
T PRK10416 194 ARGIDVLIIDTAG 206 (318)
T ss_pred hCCCCEEEEeCCC
Confidence 2578999999743
No 133
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=48.24 E-value=83 Score=26.17 Aligned_cols=98 Identities=6% Similarity=-0.034 Sum_probs=59.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCceE-EeccCCCCCCCcccccchhhhhc-CCC
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSMCG-PHVGV-EPISDGFDEGGYAQAKNEDLFLN-FPV 81 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~--G~~Vt~~~~~~~~~~~~~-~~i~~-~~lp~~~~~~~~~~~~~~~~~l~-~~~ 81 (198)
+|+++-.-+.|-+.=...+.+.|.++ +.+|++++.+.+.+.++. +.|+- +.++.+-...+......+...++ .++
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~~~~~~~~~~~~~~~~lr~~~y 80 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLGHGALELTERRRLGRSLREERY 80 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCcccchhhhHHHHHHHHHhhcCC
Confidence 47888999999999999999999885 899999998877665554 55532 33331100000000011112222 578
Q ss_pred cEEEeCCCcchHHHHHHHhCCCc
Q 036105 82 NCVVYDSFLPWALDVAKEYGLYG 104 (198)
Q Consensus 82 ~~vi~D~~~~~~~~vA~~~~iP~ 104 (198)
|++|.=........++...|+|.
T Consensus 81 D~vi~l~~~~~s~ll~~~~~~~~ 103 (334)
T TIGR02195 81 DQAIVLPNSLKSALIPFFAGIPH 103 (334)
T ss_pred CEEEECCCCHHHHHHHHHcCCCc
Confidence 88776544434555666667764
No 134
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=48.17 E-value=38 Score=29.24 Aligned_cols=20 Identities=25% Similarity=0.168 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCceeecccch
Q 036105 93 ALDVAKEYGLYGAAFFTNSA 112 (198)
Q Consensus 93 ~~~vA~~~~iP~~~f~~~~a 112 (198)
..-+|+++|+|.++..+++-
T Consensus 272 lA~~Ak~~~vPfyV~ap~~k 291 (363)
T PRK05772 272 EAVIAHELGIPFYALAPTST 291 (363)
T ss_pred HHHHHHHhCCCEEEEccccc
Confidence 35678999999999877653
No 135
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=48.14 E-value=17 Score=31.91 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEecc
Q 036105 20 NPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 20 ~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
.=.-.|++.|+++||+|+++++.
T Consensus 20 ~~~~~L~~aL~~~G~~V~Vi~p~ 42 (476)
T cd03791 20 DVVGALPKALAKLGHDVRVIMPK 42 (476)
T ss_pred HHHHHHHHHHHHCCCeEEEEecC
Confidence 45578999999999999999964
No 136
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=48.11 E-value=89 Score=26.08 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=53.4
Q ss_pred EEcCCCc-cChHHHHHHHHHHHhCCCeEEEEecccccc---ccCCCCceEEeccCCCCCCCcccccchhhhhc-CCCcEE
Q 036105 10 LLPYPSQ-GHINPLLQFAKRLASKGVKATLATTHYTAK---SMCGPHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCV 84 (198)
Q Consensus 10 ~~p~p~~-GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~---~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~v 84 (198)
+++.... |--+-++.|++.|..+|+.+++++...... .+...+++++.++..... .+.....+..+++ .++|+|
T Consensus 7 ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~l~~~~~Div 85 (374)
T TIGR03088 7 VVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQPGK-DVAVYPQLYRLLRQLRPDIV 85 (374)
T ss_pred EeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCCCCC-ChHHHHHHHHHHHHhCCCEE
Confidence 3444444 455889999999999999998887532211 122256777777521100 1111112333343 578888
Q ss_pred EeCCCcch-HHHHHHHhCCCce
Q 036105 85 VYDSFLPW-ALDVAKEYGLYGA 105 (198)
Q Consensus 85 i~D~~~~~-~~~vA~~~~iP~~ 105 (198)
-+-....+ +.-++...++|..
T Consensus 86 h~~~~~~~~~~~~~~~~~~~~~ 107 (374)
T TIGR03088 86 HTRNLAALEAQLPAALAGVPAR 107 (374)
T ss_pred EEcchhHHHHHHHHHhcCCCeE
Confidence 76543332 3345566788853
No 137
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=48.00 E-value=17 Score=29.22 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccc
Q 036105 20 NPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 20 ~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
.-.-.|++.|+++|++|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 456689999999999999999853
No 138
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=46.20 E-value=39 Score=25.15 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=34.0
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATT 41 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~ 41 (198)
++++|++.+...-||=.=.--+++.|++.|++|.....
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 57899999999889999999999999999999887554
No 139
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=44.87 E-value=34 Score=28.77 Aligned_cols=19 Identities=11% Similarity=-0.272 Sum_probs=15.0
Q ss_pred HHHHHHHhCCCceeecccc
Q 036105 93 ALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 93 ~~~vA~~~~iP~~~f~~~~ 111 (198)
...+|+++++|.++...+.
T Consensus 214 ~A~~Ak~~~vPv~V~a~~~ 232 (310)
T PRK08535 214 IALAAHEARVPFMVAAETY 232 (310)
T ss_pred HHHHHHHhCCCEEEecccc
Confidence 4467889999999887655
No 140
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=44.71 E-value=1.1e+02 Score=27.07 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=62.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEe-ccccccccCC---CCceEEeccCCCCCCCcccccchhhhhc-CC
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASK--GVKATLAT-THYTAKSMCG---PHVGVEPISDGFDEGGYAQAKNEDLFLN-FP 80 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~--G~~Vt~~~-~~~~~~~~~~---~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~ 80 (198)
.+-+=..+.|=.+-...|.++|.++ +..|++.| |+...+..+. +.+....+|-++ ......|++ .+
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~-------~~~v~rFl~~~~ 123 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDL-------PIAVRRFLRKWR 123 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCc-------hHHHHHHHHhcC
Confidence 5666677889999999999999997 77777766 4333333322 345656666222 233566775 45
Q ss_pred Cc-EEEeCCCcc-hHHHHHHHhCCCceeecc
Q 036105 81 VN-CVVYDSFLP-WALDVAKEYGLYGAAFFT 109 (198)
Q Consensus 81 ~~-~vi~D~~~~-~~~~vA~~~~iP~~~f~~ 109 (198)
|+ +||...=++ -...-+++.|+|.+....
T Consensus 124 P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 124 PKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred CCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 55 556555332 244678889999998865
No 141
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=44.57 E-value=37 Score=28.46 Aligned_cols=20 Identities=10% Similarity=-0.237 Sum_probs=15.5
Q ss_pred HHHHHHHhCCCceeecccch
Q 036105 93 ALDVAKEYGLYGAAFFTNSA 112 (198)
Q Consensus 93 ~~~vA~~~~iP~~~f~~~~a 112 (198)
...+|+++++|.++...+.-
T Consensus 209 lA~~Ak~~~vPv~V~a~~~K 228 (301)
T TIGR00511 209 LALAAREARVPFMVAAETYK 228 (301)
T ss_pred HHHHHHHhCCCEEEEcccce
Confidence 45678899999999876553
No 142
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=44.35 E-value=41 Score=27.06 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=27.6
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 036105 15 SQGHINPLLQFAKRLASKGVKATLATTHYTAK 46 (198)
Q Consensus 15 ~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~ 46 (198)
..|+-.-+..+++.|.+.|++|++++......
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~ 44 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGP 44 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCC
Confidence 47888999999999999999999999865443
No 143
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=44.13 E-value=38 Score=21.77 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeccc
Q 036105 21 PLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 21 P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
--+++|..|+..|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 34789999999999999998754
No 144
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=43.85 E-value=42 Score=27.72 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=62.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCce-EEeccCC-CCCCCcc-c-ccchh---hh
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSMCG-PHVG-VEPISDG-FDEGGYA-Q-AKNED---LF 76 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~--G~~Vt~~~~~~~~~~~~~-~~i~-~~~lp~~-~~~~~~~-~-~~~~~---~~ 76 (198)
+|+++-....|-+.=...+.+.|.++ +.+||+++.+.+..-++. +.|. ++.++.. .-...+. . ...+. ..
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVALRRWRKTLFSAATWREIKALRAL 80 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEechhhhhhccccchhHHHHHHHHHH
Confidence 47888899999999999999999986 899999999887766654 6664 5555411 0000000 0 01111 22
Q ss_pred hc-CCCcEEEeCCCcch-HHHHHHHhCCCceee
Q 036105 77 LN-FPVNCVVYDSFLPW-ALDVAKEYGLYGAAF 107 (198)
Q Consensus 77 l~-~~~~~vi~D~~~~~-~~~vA~~~~iP~~~f 107 (198)
++ .++|.+| |....+ ..-++...+-+++.|
T Consensus 81 lr~~~yD~vi-~~~~~~~s~~l~~~~~~~r~g~ 112 (319)
T TIGR02193 81 LRAERYDAVI-DAQGLIKSALVARMARGPRHGF 112 (319)
T ss_pred Hhhccchhhh-hhhhhHHHHHHHHhhCCceecC
Confidence 22 5788876 543332 445566666555555
No 145
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=43.58 E-value=27 Score=27.02 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCeEEEEeccc
Q 036105 23 LQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~~~ 43 (198)
..||+.+..+|++||++..+.
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 568999999999999999874
No 146
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.46 E-value=99 Score=26.89 Aligned_cols=56 Identities=13% Similarity=0.206 Sum_probs=44.5
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc--c-cccCCCCceEEecc
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT--A-KSMCGPHVGVEPIS 59 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~--~-~~~~~~~i~~~~lp 59 (198)
++.|++++-..-.||--=|-.=|.-|+..|++|+++.-... . +-+..++|+++.+|
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~ 69 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMP 69 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCC
Confidence 46788888888999998899999999999999999874332 1 22334889999987
No 147
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=42.44 E-value=18 Score=26.70 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=16.5
Q ss_pred CCCccChHHHHHHHHHHHh
Q 036105 13 YPSQGHINPLLQFAKRLAS 31 (198)
Q Consensus 13 ~p~~GH~~P~l~La~~L~~ 31 (198)
.|.+|-.||+|+|+-.|+=
T Consensus 56 ~pe~G~tNPFLHlsmHLsI 74 (137)
T PF08897_consen 56 SPEQGETNPFLHLSMHLSI 74 (137)
T ss_pred CcccCccchhHHHHHHHHH
Confidence 3678999999999999974
No 148
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.37 E-value=51 Score=28.80 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=27.5
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
|+-+..+|+++ +.|+ .-+ .+|+.|+++|++|+++....
T Consensus 1 ~~~~~k~v~ii---G~g~-~G~-~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 1 MELKGKKVLVV---GAGV-SGL-ALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCcCCCEEEEE---CCCH-HHH-HHHHHHHHCCCEEEEEeCCc
Confidence 54444556665 4566 555 99999999999999987653
No 149
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=41.34 E-value=55 Score=22.76 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=28.9
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 9 VLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 9 v~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
+++-+...|+-..+.++++.+.++|..|..+|.....
T Consensus 56 ~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 56 LVIIISYSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred eeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 3333447889999999999999999999888865443
No 150
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.29 E-value=31 Score=30.21 Aligned_cols=27 Identities=26% Similarity=0.536 Sum_probs=22.2
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccc
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
.||+.|++.| ++|...||+|+++....
T Consensus 48 lGhlv~l~kL-~~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 48 LGHLVPLMKL-RRFQDAGHKPIVLIGDA 74 (401)
T ss_pred hhhHHHHHHH-HHHHHCCCeEEEEeccc
Confidence 4999999988 56778899999988653
No 151
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=41.12 E-value=37 Score=21.44 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 036105 23 LQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~~ 42 (198)
+..|..|+++|++|+++=..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56788999999999998754
No 152
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=40.77 E-value=98 Score=27.66 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCCeEEEEecccccc----ccCC---CCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCCCcchH
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAK----SMCG---PHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDSFLPWA 93 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~----~~~~---~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~~~~~ 93 (198)
...|++.|.+.|.+|..+.+..... .++. ++..++ .+ . ....+.+.++ .++|++|.. .+.
T Consensus 336 ~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~--~d------~-~~~e~~~~i~~~~pDliig~---s~~ 403 (475)
T PRK14478 336 SWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMI--DD------A-NPRELYKMLKEAKADIMLSG---GRS 403 (475)
T ss_pred HHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEE--eC------C-CHHHHHHHHhhcCCCEEEec---Cch
Confidence 4467778889999998887654332 1111 111111 10 0 0112333343 578999987 567
Q ss_pred HHHHHHhCCCcee
Q 036105 94 LDVAKEYGLYGAA 106 (198)
Q Consensus 94 ~~vA~~~~iP~~~ 106 (198)
..+|+++|||.+-
T Consensus 404 ~~~a~k~giP~~~ 416 (475)
T PRK14478 404 QFIALKAGMPWLD 416 (475)
T ss_pred hhhhhhcCCCEEE
Confidence 7999999999873
No 153
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=40.21 E-value=63 Score=21.15 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=27.1
Q ss_pred ceEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEe
Q 036105 6 RHVVLLPYPSQ--GHINPLLQFAKRLASKGVKATLAT 40 (198)
Q Consensus 6 ~hvv~~p~p~~--GH~~P~l~La~~L~~~G~~Vt~~~ 40 (198)
-+|+++|.... .+..-.+.++..|.+.|++|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 46888887653 466778899999999999988744
No 154
>PTZ00445 p36-lilke protein; Provisional
Probab=39.29 E-value=35 Score=27.26 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=22.8
Q ss_pred cChHH-HHHHHHHHHhCCCeEEEEeccc
Q 036105 17 GHINP-LLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 17 GH~~P-~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
+|..| +..+.++|.+.|..|+++|-..
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd 101 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSD 101 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccc
Confidence 56677 8899999999999999999543
No 155
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=39.23 E-value=80 Score=27.75 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=51.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCcccccchh---hhhc-CCCc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEGGYAQAKNED---LFLN-FPVN 82 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~---~~l~-~~~~ 82 (198)
++.++..|.. ...+++.|.+.|.+|..+.|.............. ++ .+.. ......++. +.++ .++|
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~--~~-~~~~-~v~~~~dl~~~~~~l~~~~pD 357 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRW--LE-MLGV-EVKYRASLEDDMEAVLEFEPD 357 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHH--HH-hcCC-CceeccCHHHHHHHHhhCCCC
Confidence 6777777776 8888999999999999987763222111000000 00 0100 000011222 2223 5899
Q ss_pred EEEeCCCcchHHHHHHHhCCCceee
Q 036105 83 CVVYDSFLPWALDVAKEYGLYGAAF 107 (198)
Q Consensus 83 ~vi~D~~~~~~~~vA~~~~iP~~~f 107 (198)
.+|.... ...+|+++|||.+..
T Consensus 358 llig~s~---~~~~A~k~gIP~vr~ 379 (422)
T TIGR02015 358 LAIGTTP---LVQFAKEHGIPALYF 379 (422)
T ss_pred EEEcCCc---chHHHHHcCCCEEEe
Confidence 9998843 456899999998764
No 156
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=39.07 E-value=66 Score=25.64 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 036105 23 LQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~~ 42 (198)
.+||+.|+++|++|+++...
T Consensus 30 ~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhCCCEEEEEECc
Confidence 57889999999999998743
No 157
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=38.97 E-value=1.5e+02 Score=22.38 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCeEEEEeccccc-c----ccCC--CCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCCCcc--
Q 036105 22 LLQFAKRLASKGVKATLATTHYTA-K----SMCG--PHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDSFLP-- 91 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~-~----~~~~--~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~~~-- 91 (198)
+..|.+...++|.+|.++....-. + .+.. |+++++-..++.-. . +....+.+.++ .++|+|++-+-.+
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~-~~~~~i~~~I~~~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFD-E-EEEEAIINRINASGPDIVFVGLGAPKQ 114 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC-h-hhHHHHHHHHHHcCCCEEEEECCCCHH
Confidence 445666666788999999875422 2 2222 78888865433211 0 01122222333 6889999999886
Q ss_pred --hHHHHHHHhCCC
Q 036105 92 --WALDVAKEYGLY 103 (198)
Q Consensus 92 --~~~~vA~~~~iP 103 (198)
|+....++++.+
T Consensus 115 E~~~~~~~~~l~~~ 128 (172)
T PF03808_consen 115 ERWIARHRQRLPAG 128 (172)
T ss_pred HHHHHHHHHHCCCC
Confidence 777888888887
No 158
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=38.83 E-value=36 Score=26.59 Aligned_cols=83 Identities=17% Similarity=0.075 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCeEEEEecccccccc---CCCCceEEeccCCCCCCCcccccchhhhhcCCCcEEEeCCC------cch-
Q 036105 23 LQFAKRLASKGVKATLATTHYTAKSM---CGPHVGVEPISDGFDEGGYAQAKNEDLFLNFPVNCVVYDSF------LPW- 92 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~~~~~~~~---~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~vi~D~~------~~~- 92 (198)
..+++.|.+.|++|+.++-....+.. +..+++++..+ ++....+.+.++ ..|+|++=.. ..+
T Consensus 12 ~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d-------~~~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~ 83 (233)
T PF05368_consen 12 RSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEAD-------YDDPESLVAALK-GVDAVFSVTPPSHPSELEQQ 83 (233)
T ss_dssp HHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES--------TT-HHHHHHHHT-TCSEEEEESSCSCCCHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecc-------cCCHHHHHHHHc-CCceEEeecCcchhhhhhhh
Confidence 56788888899999999987644332 23567776543 112333444453 3444443222 112
Q ss_pred --HHHHHHHhCCCceeecccchH
Q 036105 93 --ALDVAKEYGLYGAAFFTNSAT 113 (198)
Q Consensus 93 --~~~vA~~~~iP~~~f~~~~a~ 113 (198)
..+.|.+.||+.++++.....
T Consensus 84 ~~li~Aa~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 84 KNLIDAAKAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHHHHHHHHT-SEEEESEESSG
T ss_pred hhHHHhhhccccceEEEEEeccc
Confidence 346778889998888765543
No 159
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=38.77 E-value=73 Score=25.91 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEecccc
Q 036105 18 HINPLLQFAKRLASKGVKATLATTHYT 44 (198)
Q Consensus 18 H~~P~l~La~~L~~~G~~Vt~~~~~~~ 44 (198)
--.-+.++++.|.++|++|++++....
T Consensus 13 ~~~~~~~~~~~L~~~g~~v~v~~~~~~ 39 (355)
T cd03799 13 SETFILREILALEAAGHEVEIFSLRPP 39 (355)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 345688999999999999999997543
No 160
>PRK12342 hypothetical protein; Provisional
Probab=38.36 E-value=99 Score=25.30 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=52.1
Q ss_pred hHHH----HHHHHHHHhCCCeEEEEeccccc--cc-c-C-C--CCc-eEEeccCC-CCCCC-cccccchhhhhc-CCCcE
Q 036105 19 INPL----LQFAKRLASKGVKATLATTHYTA--KS-M-C-G--PHV-GVEPISDG-FDEGG-YAQAKNEDLFLN-FPVNC 83 (198)
Q Consensus 19 ~~P~----l~La~~L~~~G~~Vt~~~~~~~~--~~-~-~-~--~~i-~~~~lp~~-~~~~~-~~~~~~~~~~l~-~~~~~ 83 (198)
+||+ ++.|-+|.++|.+||+++..... .. + + . -|. +-+-+.|. +...+ ......+...++ ..+|+
T Consensus 33 iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DL 112 (254)
T PRK12342 33 ISQFDLNAIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDL 112 (254)
T ss_pred CChhhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCE
Confidence 5554 67788888789999999976543 22 2 2 1 111 12223221 21111 111222334444 35899
Q ss_pred EEeCCCcc-h-----HHHHHHHhCCCceeeccc
Q 036105 84 VVYDSFLP-W-----ALDVAKEYGLYGAAFFTN 110 (198)
Q Consensus 84 vi~D~~~~-~-----~~~vA~~~~iP~~~f~~~ 110 (198)
|++-.... . ...+|+.+|+|.+.+...
T Consensus 113 Vl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 113 LLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred EEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 99864332 2 568999999999988643
No 161
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=38.30 E-value=43 Score=23.10 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 20 NPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 20 ~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
.|.+.|++.|.++|.+|.+.=+.-..
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~ 42 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDE 42 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccCh
Confidence 68999999999999999887765433
No 162
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=37.71 E-value=20 Score=24.71 Aligned_cols=17 Identities=35% Similarity=0.237 Sum_probs=13.4
Q ss_pred cCCCCEEEEcChhhhcH
Q 036105 174 LDKADWIFGNTFQELEG 190 (198)
Q Consensus 174 ~~~a~~vlvNTf~eLE~ 190 (198)
..+||-+++|||-=.|+
T Consensus 34 ~e~AD~iiiNTC~V~~~ 50 (98)
T PF00919_consen 34 PEEADVIIINTCTVRES 50 (98)
T ss_pred cccCCEEEEEcCCCCcH
Confidence 46899999999975543
No 163
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=37.67 E-value=37 Score=26.56 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEeccCCCCCCCc-----cccc------chhhhhc-CCCcEE
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCG-----PHVGVEPISDGFDEGGY-----AQAK------NEDLFLN-FPVNCV 84 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-----~~i~~~~lp~~~~~~~~-----~~~~------~~~~~l~-~~~~~v 84 (198)
+..|++.|.+.||+|+++.+..+.+.... ..+++.....+....+. +.++ .+..++. .+||+|
T Consensus 16 i~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv~~al~~~~~~~~pDLV 95 (196)
T PF01975_consen 16 IRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCVKLALDGLLPDKKPDLV 95 (196)
T ss_dssp HHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHHHHHHHCTSTTSS-SEE
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHHHHHHHhhhccCCCCEE
Confidence 56789999778899999999877654322 23444332111111011 1111 1233343 358999
Q ss_pred EeC----------CCcchH---HHHHHHhCCCceeecccc
Q 036105 85 VYD----------SFLPWA---LDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 85 i~D----------~~~~~~---~~vA~~~~iP~~~f~~~~ 111 (198)
|+- .+.+.+ .--|...|||.+.++...
T Consensus 96 iSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 96 ISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp EEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred EECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 984 334433 344556799999997544
No 164
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=37.14 E-value=1.5e+02 Score=24.71 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=61.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCce-EEeccCCCCCCCcccccchhhh---hc-
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSMCG-PHVG-VEPISDGFDEGGYAQAKNEDLF---LN- 78 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~--G~~Vt~~~~~~~~~~~~~-~~i~-~~~lp~~~~~~~~~~~~~~~~~---l~- 78 (198)
+|+++-.-+.|-+.=...+.+.|.++ +.+|++++.+.+.+-++. +.|. +++++..-...+........++ |+
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~~~~~~~~~~~~~l~~~lr~ 80 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKAKAGERKLANQFHLIKVLRA 80 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhhcchHHHHHHHHHHHHHHHh
Confidence 47888889999999999999999884 899999999887766654 6664 4555421100000000011111 22
Q ss_pred CCCcEEEeCCCcch-HHHHHHHhCCCcee
Q 036105 79 FPVNCVVYDSFLPW-ALDVAKEYGLYGAA 106 (198)
Q Consensus 79 ~~~~~vi~D~~~~~-~~~vA~~~~iP~~~ 106 (198)
.++|.+| |....+ ...++...|.|.-+
T Consensus 81 ~~yD~vi-dl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 81 NRYDLVV-NLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred CCCCEEE-ECCcchHHHHHHHhcCCCeEE
Confidence 5788877 443333 45667777888433
No 165
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=37.09 E-value=62 Score=22.40 Aligned_cols=35 Identities=14% Similarity=-0.073 Sum_probs=30.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATT 41 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~ 41 (198)
+++....++..|-.....++..|.++|++|.++..
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 35777788999999999999999999999888864
No 166
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=36.95 E-value=35 Score=29.74 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=51.5
Q ss_pred cChHHHHHHHHHHHhCCC--eEEEEeccccc--------cccC--CCCceEEeccCCCCCC-Cccc-c-------cchhh
Q 036105 17 GHINPLLQFAKRLASKGV--KATLATTHYTA--------KSMC--GPHVGVEPISDGFDEG-GYAQ-A-------KNEDL 75 (198)
Q Consensus 17 GH~~P~l~La~~L~~~G~--~Vt~~~~~~~~--------~~~~--~~~i~~~~lp~~~~~~-~~~~-~-------~~~~~ 75 (198)
|=-.=+.+||+.|+++|| +|+++|..... .... ..+++++.++-+-... .... . ..+..
T Consensus 27 G~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~~l~~ 106 (439)
T TIGR02472 27 GQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELADNLLQ 106 (439)
T ss_pred CcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHHHHHHH
Confidence 333567899999999997 99999953221 1111 1567777775211000 0000 0 11222
Q ss_pred hhc---CCCcEEEeCCCc-chH-HHHHHHhCCCceeec
Q 036105 76 FLN---FPVNCVVYDSFL-PWA-LDVAKEYGLYGAAFF 108 (198)
Q Consensus 76 ~l~---~~~~~vi~D~~~-~~~-~~vA~~~~iP~~~f~ 108 (198)
+++ .++|+|-+-... .++ ..+++..|+|.+...
T Consensus 107 ~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 107 HLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred HHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 332 258999887532 333 355677899987654
No 167
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=36.89 E-value=29 Score=26.82 Aligned_cols=95 Identities=21% Similarity=0.261 Sum_probs=45.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccc-cC---CCCceEEeccCCCCCCCcccccchhhhhc-C
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKS-MC---GPHVGVEPISDGFDEGGYAQAKNEDLFLN-F 79 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~--G~~Vt~~~~~~~~~~-~~---~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~ 79 (198)
.++-+=..+.|=++-...|+++|.++ |+.|.+-++...... .. ++.+....+|-+. ....+.|++ .
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~-------~~~~~rfl~~~ 94 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDF-------PWAVRRFLDHW 94 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SS-------HHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccC-------HHHHHHHHHHh
Confidence 34445566779999999999999986 787777665322221 11 1234444454222 223556666 3
Q ss_pred CCcE-EEeCCCcch--HHHHHHHhCCCceeecc
Q 036105 80 PVNC-VVYDSFLPW--ALDVAKEYGLYGAAFFT 109 (198)
Q Consensus 80 ~~~~-vi~D~~~~~--~~~vA~~~~iP~~~f~~ 109 (198)
+|++ |+... --| ....|++.|||.+....
T Consensus 95 ~P~~~i~~Et-ElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 95 RPDLLIWVET-ELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp --SEEEEES-----HHHHHH-----S-EEEEEE
T ss_pred CCCEEEEEcc-ccCHHHHHHHhhcCCCEEEEee
Confidence 4454 45444 445 44678889999998864
No 168
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=36.59 E-value=1.2e+02 Score=23.64 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=29.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
|+++..+..-|--=+.+++++|++.|.+|.++.-..
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~ 146 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGE 146 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 788888888887667789999999999988887643
No 169
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=36.30 E-value=2.4e+02 Score=24.68 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCc--ccccchhhhhc-CCCcEEEeCCCcchHHHHH
Q 036105 21 PLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEGGY--AQAKNEDLFLN-FPVNCVVYDSFLPWALDVA 97 (198)
Q Consensus 21 P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~--~~~~~~~~~l~-~~~~~vi~D~~~~~~~~vA 97 (198)
-...|++.|.+.|..|..+.+....+.... .+++..-..+.+..-. ....++.+.++ .++|+||.+.. ...+|
T Consensus 310 ~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~~pdliig~~~---~~~~a 385 (428)
T cd01965 310 LLLGLSRFLLEMGAEPVAAVTGTDNPPFEK-RMELLASLEGIPAEVVFVGDLWDLESLAKEEPVDLLIGNSH---GRYLA 385 (428)
T ss_pred HHHHHHHHHHHcCCcceEEEEcCCCchhHH-HHHHhhhhcCCCceEEECCCHHHHHHHhhccCCCEEEECch---hHHHH
Confidence 456788888888988877666433222100 0110000001111000 01223344444 57999999874 57899
Q ss_pred HHhCCCceee
Q 036105 98 KEYGLYGAAF 107 (198)
Q Consensus 98 ~~~~iP~~~f 107 (198)
+++|+|.+.+
T Consensus 386 ~~~~ip~i~~ 395 (428)
T cd01965 386 RDLGIPLVRV 395 (428)
T ss_pred HhcCCCEEEe
Confidence 9999999754
No 170
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=35.91 E-value=1.2e+02 Score=24.90 Aligned_cols=93 Identities=12% Similarity=0.017 Sum_probs=51.5
Q ss_pred ChHHH----HHHHHHHHhC-C-CeEEEEeccccc----cccCC---CCc-eEEeccC-CCCCCC-cccccchhhhhc-CC
Q 036105 18 HINPL----LQFAKRLASK-G-VKATLATTHYTA----KSMCG---PHV-GVEPISD-GFDEGG-YAQAKNEDLFLN-FP 80 (198)
Q Consensus 18 H~~P~----l~La~~L~~~-G-~~Vt~~~~~~~~----~~~~~---~~i-~~~~lp~-~~~~~~-~~~~~~~~~~l~-~~ 80 (198)
=+||+ ++.|-+|..+ | .+||+++..... ..++. -|. +-+-+.| .+...+ ......+...++ ..
T Consensus 33 ~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~ 112 (256)
T PRK03359 33 KISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAG 112 (256)
T ss_pred ccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhC
Confidence 35664 7788888875 3 799999976543 11221 111 1222322 111101 111122334444 46
Q ss_pred CcEEEeCCCcc------hHHHHHHHhCCCceeeccc
Q 036105 81 VNCVVYDSFLP------WALDVAKEYGLYGAAFFTN 110 (198)
Q Consensus 81 ~~~vi~D~~~~------~~~~vA~~~~iP~~~f~~~ 110 (198)
+|+|++-.... -...+|+.+|+|.+.+...
T Consensus 113 ~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 113 FDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 89999865332 2457999999999988654
No 171
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=35.90 E-value=1.5e+02 Score=20.78 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=51.2
Q ss_pred cChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCCC---
Q 036105 17 GHINPLLQFAKRLASK--GVKATLATTHYTAKSMCG-PHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDSF--- 89 (198)
Q Consensus 17 GH~~P~l~La~~L~~~--G~~Vt~~~~~~~~~~~~~-~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~--- 89 (198)
++=.-++.+++++.+. |+.+ +.|....+.++. .++....+.-+ +.+| .+++.+.++ ..++.||.=.-
T Consensus 9 ~dK~~~~~~a~~~~~ll~Gf~i--~AT~gTa~~L~~~~Gi~v~~vk~~-~~~g---~~~i~~~i~~g~i~~VInt~~~~~ 82 (115)
T cd01422 9 NKKEDLVEFVKQHQELLSRHRL--VATGTTGLLIQEATGLTVNRMKSG-PLGG---DQQIGALIAEGEIDAVIFFRDPLT 82 (115)
T ss_pred cchHHHHHHHHHHHHHhcCCEE--EEechHHHHHHHhhCCcEEEEecC-CCCc---hhHHHHHHHcCceeEEEEcCCCCC
Confidence 3445678999999998 9987 466666666655 67776655211 2212 233444444 56777765432
Q ss_pred ----cchH---HHHHHHhCCCceeec
Q 036105 90 ----LPWA---LDVAKEYGLYGAAFF 108 (198)
Q Consensus 90 ----~~~~---~~vA~~~~iP~~~f~ 108 (198)
..-. ...|-+.+||.++-.
T Consensus 83 ~~~~~~dg~~iRr~a~~~~Ip~~Ttl 108 (115)
T cd01422 83 AQPHEPDVKALLRLCDVYNIPLATNR 108 (115)
T ss_pred CCcccccHHHHHHHHHHcCCCEEEcH
Confidence 1112 245888899987643
No 172
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=35.84 E-value=46 Score=25.15 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCccCh-HHHHHHHHHHHhCCCeEEEEec
Q 036105 4 DRRHVVLLPYPSQGHI-NPLLQFAKRLASKGVKATLATT 41 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~-~P~l~La~~L~~~G~~Vt~~~~ 41 (198)
+..+|+++.-++ += -=-+.+||.|+++|++|+++..
T Consensus 24 ~~~~v~il~G~G--nNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 24 KGPRVLILCGPG--NNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp TT-EEEEEE-SS--HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCeEEEEECCC--CChHHHHHHHHHHHHCCCeEEEEEE
Confidence 345666666543 11 2247789999999999999554
No 173
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=35.81 E-value=1e+02 Score=21.69 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=32.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
||++..-++.|=......|++.|+++|.+|-++.+..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888899999999999999999999999988765
No 174
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=35.15 E-value=20 Score=24.19 Aligned_cols=82 Identities=21% Similarity=0.169 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCC-Ccccccchhhhhc-CCCcEEEeCCCcc--------
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEG-GYAQAKNEDLFLN-FPVNCVVYDSFLP-------- 91 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~-~~~~~~~~~~~l~-~~~~~vi~D~~~~-------- 91 (198)
++.+|++|.+.|+ .++.|....+.++..+|....+-+....+ ..+....+.+.++ .++|.||.-..-.
T Consensus 2 ~~~~a~~l~~lG~--~i~AT~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~~~~~~dg 79 (95)
T PF02142_consen 2 IVPLAKRLAELGF--EIYATEGTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFSDQEHTDG 79 (95)
T ss_dssp HHHHHHHHHHTTS--EEEEEHHHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THHHHHTHHH
T ss_pred HHHHHHHHHHCCC--EEEEChHHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCcccccCCc
Confidence 5789999999995 56788777777766777755543211110 0000012444454 6788888755322
Q ss_pred -hHHHHHHHhCCCce
Q 036105 92 -WALDVAKEYGLYGA 105 (198)
Q Consensus 92 -~~~~vA~~~~iP~~ 105 (198)
.....|.+++||.+
T Consensus 80 ~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 80 YKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHHHTTSHEE
T ss_pred HHHHHHHHHcCCCCc
Confidence 12467778888865
No 175
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=35.12 E-value=79 Score=24.54 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=49.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc----ccCC----CCceEEeccCCCCCCCcccccchhhhhc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK----SMCG----PHVGVEPISDGFDEGGYAQAKNEDLFLN 78 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~----~~~~----~~i~~~~lp~~~~~~~~~~~~~~~~~l~ 78 (198)
-|+++-..+.|=..-...||.++..+|.+|.+++++..+. +++. .++.+......-. ....+.+.++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~-----~~~~~~~~l~ 77 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD-----PAEIAREALE 77 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC-----HHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh-----hHHHHHHHHH
Confidence 3677888899999999999999999999999999876542 2221 4566655431110 0111222222
Q ss_pred ----CCCcEEEeCCC
Q 036105 79 ----FPVNCVVYDSF 89 (198)
Q Consensus 79 ----~~~~~vi~D~~ 89 (198)
.+.|.|+.|.-
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 56789999974
No 176
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=34.92 E-value=68 Score=24.06 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=27.8
Q ss_pred ccchhhhhcCCCcEEEeCCCcch--HHHHHHHhCCCceeecc
Q 036105 70 AKNEDLFLNFPVNCVVYDSFLPW--ALDVAKEYGLYGAAFFT 109 (198)
Q Consensus 70 ~~~~~~~l~~~~~~vi~D~~~~~--~~~vA~~~~iP~~~f~~ 109 (198)
..+++.++..+||+||......- ..+.-++.|||++.+..
T Consensus 59 ~~n~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 59 SLNVELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCCHHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 45677888778999998654322 33445678999988853
No 177
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=34.18 E-value=35 Score=26.60 Aligned_cols=37 Identities=35% Similarity=0.377 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEecc
Q 036105 21 PLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPIS 59 (198)
Q Consensus 21 P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp 59 (198)
=+..||+.|.+.|+++ +.|....+.++..+|.+..+.
T Consensus 12 ~l~~lAk~L~~lGf~I--~AT~GTAk~L~e~GI~v~~V~ 48 (187)
T cd01421 12 GLVEFAKELVELGVEI--LSTGGTAKFLKEAGIPVTDVS 48 (187)
T ss_pred cHHHHHHHHHHCCCEE--EEccHHHHHHHHcCCeEEEhh
Confidence 3678999999999987 577777776666677766654
No 178
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=33.14 E-value=82 Score=26.97 Aligned_cols=19 Identities=21% Similarity=-0.185 Sum_probs=14.7
Q ss_pred HHHHHHHhCCCceeecccc
Q 036105 93 ALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 93 ~~~vA~~~~iP~~~f~~~~ 111 (198)
..-+|+++|+|.|+..+.+
T Consensus 251 lA~~Ak~~~vPfyV~ap~s 269 (339)
T PRK06036 251 HSVLAKEHEIPFYVAAPLS 269 (339)
T ss_pred HHHHHHHhCCCEEEEeecC
Confidence 4567889999999977643
No 179
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=32.98 E-value=52 Score=25.92 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=27.0
Q ss_pred CCcEEEeCCCcchHHHHHHHhCCCceeecccc
Q 036105 80 PVNCVVYDSFLPWALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 80 ~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~ 111 (198)
.+.+||+|----.+.+-|++.|||.+++..-.
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~ 60 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDRKE 60 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEecccc
Confidence 57899999877778999999999999886533
No 180
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=32.72 E-value=2e+02 Score=25.28 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEecc-CCCCCCCcccccchhhhhc-CCCcEEEeCCCcchHHHHH
Q 036105 20 NPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPIS-DGFDEGGYAQAKNEDLFLN-FPVNCVVYDSFLPWALDVA 97 (198)
Q Consensus 20 ~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp-~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~~~~~~~vA 97 (198)
.....|++.|...|.+|..+.+....+..+. ++ +.+..++ ..++++.++ .++|+||... +...+|
T Consensus 321 ~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~-------~~~~~~~~~D---~~~l~~~i~~~~~dliig~s---~~k~~A 387 (432)
T TIGR01285 321 DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK-------LPVETVVIGD---LEDLEDLACAAGADLLITNS---HGRALA 387 (432)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh-------CCcCcEEeCC---HHHHHHHHhhcCCCEEEECc---chHHHH
Confidence 4668889999999999988777654332211 11 0000001 123444454 5789999765 567899
Q ss_pred HHhCCCceee
Q 036105 98 KEYGLYGAAF 107 (198)
Q Consensus 98 ~~~~iP~~~f 107 (198)
+++|||.+-+
T Consensus 388 ~~l~ip~ir~ 397 (432)
T TIGR01285 388 QRLALPLVRA 397 (432)
T ss_pred HHcCCCEEEe
Confidence 9999998743
No 181
>PRK09620 hypothetical protein; Provisional
Probab=32.40 E-value=54 Score=26.25 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 036105 23 LQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~~ 42 (198)
.+||+.|..+|++|+++...
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 67899999999999999765
No 182
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=32.39 E-value=1.2e+02 Score=22.53 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=33.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
+++.-.|+.|=......|++.++++|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56777889999999999999999999999999987543
No 183
>PRK13604 luxD acyl transferase; Provisional
Probab=32.25 E-value=1.2e+02 Score=25.60 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=25.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLAT 40 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~ 40 (198)
..+++.....++-.-+..+|+.|+++|+.|.-+=
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 4555655555666669999999999999876654
No 184
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=31.94 E-value=91 Score=21.64 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEec
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGV-KATLATT 41 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~-~Vt~~~~ 41 (198)
.++.++.+......|.....++++.+.+++. ++.++..
T Consensus 49 ~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 49 EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 3567788887778888888888888887765 5655443
No 185
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=31.90 E-value=3.4e+02 Score=23.53 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCeEEEEeccccccc----cCC-CCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCCCcchHHHH
Q 036105 23 LQFAKRLASKGVKATLATTHYTAKS----MCG-PHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDSFLPWALDV 96 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~~~~~~~----~~~-~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~~~~~~~v 96 (198)
..+++.|.+.|.+|..+.+...... +.. .....+.+. +. ....+.+.++ .++|++|... +...+
T Consensus 300 ~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~-~~~e~~~~i~~~~pDl~ig~s---~~~~~ 369 (410)
T cd01968 300 WSLVSALQDLGMEVVATGTQKGTKEDYERIKELLGEGTVIVD------DA-NPRELKKLLKEKKADLLVAGG---KERYL 369 (410)
T ss_pred HHHHHHHHHCCCEEEEEecccCCHHHHHHHHHHhCCCcEEEe------CC-CHHHHHHHHhhcCCCEEEECC---cchhh
Confidence 5677888889999988876543321 100 000000010 00 0112333343 5789999884 45689
Q ss_pred HHHhCCCcee
Q 036105 97 AKEYGLYGAA 106 (198)
Q Consensus 97 A~~~~iP~~~ 106 (198)
|+++|||.+.
T Consensus 370 a~~~gip~~~ 379 (410)
T cd01968 370 ALKLGIPFCD 379 (410)
T ss_pred HHhcCCCEEE
Confidence 9999999873
No 186
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=31.79 E-value=43 Score=24.78 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCeEEEEecccccccc
Q 036105 21 PLLQFAKRLASKGVKATLATTHYTAKSM 48 (198)
Q Consensus 21 P~l~La~~L~~~G~~Vt~~~~~~~~~~~ 48 (198)
-.+-|+.+|..+|++|++..++.....+
T Consensus 15 ~alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 15 SALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp HHHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 4578999999999999999998665544
No 187
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.70 E-value=55 Score=23.62 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCceEE
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVE 56 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~ 56 (198)
.+..|++|+++|++|+..-.... ... .+++++
T Consensus 25 ~~~VA~~L~e~g~dv~atDI~~~--~a~-~g~~~v 56 (129)
T COG1255 25 FLDVAKRLAERGFDVLATDINEK--TAP-EGLRFV 56 (129)
T ss_pred HHHHHHHHHHcCCcEEEEecccc--cCc-ccceEE
Confidence 57899999999988876554322 211 456665
No 188
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=31.43 E-value=85 Score=28.20 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=33.1
Q ss_pred ceEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEeccccccccCCCCceEEec
Q 036105 6 RHVVLLPYPSQGHINPL------------LQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPI 58 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~------------l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~l 58 (198)
.+|++-.-|..--+.|. ..||+.+..+|++||+++.+.... .+.+++++.+
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~--~p~~v~~i~V 319 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA--DPQGVKVIHV 319 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC--CCCCceEEEe
Confidence 35666655555555554 468999999999999999764321 1244555544
No 189
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=31.42 E-value=48 Score=28.73 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=20.9
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
-||+.|++.| ++|...||++.++...
T Consensus 46 lGh~v~l~~l-~~lq~~G~~~~iligd 71 (377)
T TIGR00234 46 LGHLVPLLKL-RDFQQAGHEVIVLLGD 71 (377)
T ss_pred HHHHHHHHHH-HHHHHCCCcEEEEEec
Confidence 4999997776 6788899999888754
No 190
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=31.38 E-value=88 Score=25.92 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=41.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCce-EEecc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSMCG-PHVG-VEPIS 59 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~--G~~Vt~~~~~~~~~~~~~-~~i~-~~~lp 59 (198)
+|+++-.-+.|-+.=..-+.+.|.++ +.+||+++.+.+.+.++. |.|. ++.++
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~ 58 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHPAVDRVIPVA 58 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcCCCccEEEeec
Confidence 79999999999999888899999885 899999998877665543 5555 34443
No 191
>PRK13236 nitrogenase reductase; Reviewed
Probab=31.29 E-value=1.1e+02 Score=25.29 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=30.9
Q ss_pred CCCCCceEEEE-cCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 1 MNEDRRHVVLL-PYPSQGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 1 m~~~~~hvv~~-p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
|..+..+++.| -=.+.|=-+-..+||..|+++|.+|-++-..
T Consensus 1 ~~~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 1 MTDENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred CCCcCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 66666666555 2233466688999999999999999998543
No 192
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=31.06 E-value=1.4e+02 Score=20.74 Aligned_cols=31 Identities=19% Similarity=0.091 Sum_probs=23.2
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 036105 11 LPYPSQGHINPLLQFAKRLASKGVKATLATT 41 (198)
Q Consensus 11 ~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~ 41 (198)
+--...|.-.-+..+++.|+++|+.|..+..
T Consensus 4 ~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 4 LLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3333445677799999999999998877754
No 193
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.55 E-value=2.5e+02 Score=22.09 Aligned_cols=32 Identities=6% Similarity=-0.093 Sum_probs=19.3
Q ss_pred EEcCCCccChHHHH-HHHHHHHhCCCeEEEEec
Q 036105 10 LLPYPSQGHINPLL-QFAKRLASKGVKATLATT 41 (198)
Q Consensus 10 ~~p~p~~GH~~P~l-~La~~L~~~G~~Vt~~~~ 41 (198)
++|.....++..++ .+.+.+.++|+++++..+
T Consensus 5 ~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~ 37 (282)
T cd06318 5 SQYTLNSPFFAALTEAAKAHAKALGYELISTDA 37 (282)
T ss_pred EeccccCHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 44543333444444 566777778998877654
No 194
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=30.50 E-value=68 Score=24.72 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=29.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSM 48 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~ 48 (198)
+|++.-..+.|=+ -..++.++|.++|++|.++.|+...+.+
T Consensus 3 ~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 3 NILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred EEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 4555444444433 4789999999999999999998655444
No 195
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=30.18 E-value=1.4e+02 Score=20.80 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=34.1
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC-CCceEEeccCCC
Q 036105 10 LLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCG-PHVGVEPISDGF 62 (198)
Q Consensus 10 ~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-~~i~~~~lp~~~ 62 (198)
++-+.-.|--.-+++.++...++|..|..+|.......+.. .++....+|++.
T Consensus 47 ~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~l~~~~~~~~~~~~~~p~~~ 100 (119)
T cd05017 47 VIAVSYSGNTEETLSAVEQAKERGAKIVAITSGGKLLEMAREHGVPVIIIPKGL 100 (119)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHcCCcEEECCCCC
Confidence 34455667778888899999999998888885443222211 345556666543
No 196
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=30.17 E-value=1.8e+02 Score=25.79 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCeEEEEecccccc----ccCC---CCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCCCcchH
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAK----SMCG---PHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDSFLPWA 93 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~----~~~~---~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~~~~~ 93 (198)
.+.+++.|.+.|.+|..+.+..... .+.. .+..+ +.+ .+..++.+.++ .++|++|.. .+.
T Consensus 338 ~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v--~~~-------~d~~e~~~~i~~~~pDl~ig~---~~~ 405 (456)
T TIGR01283 338 SWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVM--LDD-------ANPRELLKLLLEYKADLLIAG---GKE 405 (456)
T ss_pred HHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEE--EeC-------CCHHHHHHHHhhcCCCEEEEc---cch
Confidence 3577888889999998876653322 1111 11111 100 01122344444 578999975 456
Q ss_pred HHHHHHhCCCceee
Q 036105 94 LDVAKEYGLYGAAF 107 (198)
Q Consensus 94 ~~vA~~~~iP~~~f 107 (198)
..+|+++|||.+.+
T Consensus 406 ~~~a~k~giP~i~~ 419 (456)
T TIGR01283 406 RYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHhcCCCEEEc
Confidence 78999999998865
No 197
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=30.11 E-value=37 Score=27.51 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCeEEEEecccccccc
Q 036105 24 QFAKRLASKGVKATLATTHYTAKSM 48 (198)
Q Consensus 24 ~La~~L~~~G~~Vt~~~~~~~~~~~ 48 (198)
-+|..|++.|++||++......+.+
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i 29 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEAL 29 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHH
Confidence 4688999999999999875333334
No 198
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=30.09 E-value=1.4e+02 Score=24.52 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=33.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT 44 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~ 44 (198)
-|+++..++.|=..-...||..|+.+|.+|.++..+..
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 46677888889999999999999999999999998753
No 199
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=29.88 E-value=1.5e+02 Score=29.37 Aligned_cols=83 Identities=20% Similarity=0.127 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCCC-------
Q 036105 18 HINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDSF------- 89 (198)
Q Consensus 18 H~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~------- 89 (198)
.-.=++.+|++|.+.|++ +++|....+.+...+|....+.. ..+ ..+++.+.++ ..+|+||.-..
T Consensus 948 dK~~l~~~a~~l~~~G~~--i~aT~gT~~~l~~~gi~~~~v~~-~~~----~~~~i~~~i~~~~idlvIn~~~~~~~~~~ 1020 (1066)
T PRK05294 948 DKEEVVELAKRLLELGFK--ILATSGTAKFLREAGIPVELVNK-VHE----GRPHIVDLIKNGEIDLVINTPTGRQAIRD 1020 (1066)
T ss_pred cHHHHHHHHHHHHHcCCE--EEEccHHHHHHHHCCCeeEEEee-ccC----cCccHHHHHHcCCeEEEEECCCCcccccc
Confidence 456688999999999976 56777777666656666554431 011 1234555555 67888888642
Q ss_pred cchHHHHHHHhCCCceee
Q 036105 90 LPWALDVAKEYGLYGAAF 107 (198)
Q Consensus 90 ~~~~~~vA~~~~iP~~~f 107 (198)
..+....|-++|||.++-
T Consensus 1021 g~~iRr~Av~~~ip~~T~ 1038 (1066)
T PRK05294 1021 GFSIRRAALEYKVPYITT 1038 (1066)
T ss_pred cHHHHHHHHHcCCCEEec
Confidence 234668899999999843
No 200
>PRK07206 hypothetical protein; Provisional
Probab=29.85 E-value=1.3e+02 Score=25.84 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=45.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCcccccchhhhhc-CCCcEEE
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVV 85 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi 85 (198)
+++++-.- ..-..+++.+.++|+++..++........-............++. .....+.++++ .++|.||
T Consensus 4 ~~liv~~~-----~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~l~~~~~~~~~d~vi 75 (416)
T PRK07206 4 KVVIVDPF-----SSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIIN---GDIDDLVEFLRKLGPEAII 75 (416)
T ss_pred eEEEEcCC-----chHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcC---CCHHHHHHHHHHcCCCEEE
Confidence 56666542 223568899999999988888654321100000000000000000 01122333333 5678888
Q ss_pred --eCCCcchHHHHHHHhCCC
Q 036105 86 --YDSFLPWALDVAKEYGLY 103 (198)
Q Consensus 86 --~D~~~~~~~~vA~~~~iP 103 (198)
+|.....+..+++++|+|
T Consensus 76 ~~~e~~~~~~a~l~~~l~l~ 95 (416)
T PRK07206 76 AGAESGVELADRLAEILTPQ 95 (416)
T ss_pred ECCCccHHHHHHHHHhcCCC
Confidence 444555667788888887
No 201
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=29.74 E-value=72 Score=24.75 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=29.4
Q ss_pred eEEEEcCCCccCh-HHHHHHHHHHHhCCCeEEEEe
Q 036105 7 HVVLLPYPSQGHI-NPLLQFAKRLASKGVKATLAT 40 (198)
Q Consensus 7 hvv~~p~p~~GH~-~P~l~La~~L~~~G~~Vt~~~ 40 (198)
=+++-|.|+.=|+ .|.-+++..|.+.|.++..+.
T Consensus 35 V~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lv 69 (194)
T TIGR03264 35 VVAVAMSPGRRHITKPVCEITYALREAGIQTSVLV 69 (194)
T ss_pred EEEEecCcccccCCCcHHHHHHHHHHcCCccceEE
Confidence 3678899999999 899999999999998866554
No 202
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=29.49 E-value=94 Score=25.18 Aligned_cols=30 Identities=10% Similarity=0.096 Sum_probs=25.0
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
.|--.-...|++.|+++|+.|++++.....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (366)
T cd03822 13 CGIATFTTDLVNALSARGPDVLVVSVAALY 42 (366)
T ss_pred CcHHHHHHHHHHHhhhcCCeEEEEEeeccc
Confidence 466678899999999999999999876443
No 203
>PRK06849 hypothetical protein; Provisional
Probab=29.48 E-value=1.4e+02 Score=25.52 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=27.1
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
|+.+ .+|++.- |-..--+++++.|.++|++|.++....
T Consensus 1 ~~~~-~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 1 MNTK-KTVLITG----ARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCC-CEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4543 5566552 233358999999999999999987754
No 204
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=29.22 E-value=1.2e+02 Score=21.77 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCCeEEEEecccccc---ccCCCCce----EEeccCCCCCCCcccccchhhhhc----CCCcEEEeCCCc
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAK---SMCGPHVG----VEPISDGFDEGGYAQAKNEDLFLN----FPVNCVVYDSFL 90 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~---~~~~~~i~----~~~lp~~~~~~~~~~~~~~~~~l~----~~~~~vi~D~~~ 90 (198)
+.++-+.|.++|+.+.++|...... .++..++. .+...+...... .....+...++ .+-+|+.+|-..
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~K-p~~~~~~~~~~~~~~~p~~~~~vgD~~ 160 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRK-PDPDAYRRALEKLGIPPEEILFVGDSP 160 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSST-TSHHHHHHHHHHHTSSGGGEEEEESSH
T ss_pred hhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhh-hHHHHHHHHHHHcCCCcceEEEEeCCH
Confidence 4567788888999999998764332 11112222 222211111100 00111222222 344576666555
Q ss_pred chHHHHHHHhCCCceee
Q 036105 91 PWALDVAKEYGLYGAAF 107 (198)
Q Consensus 91 ~~~~~vA~~~~iP~~~f 107 (198)
.-...|++.|++.+.+
T Consensus 161 -~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 161 -SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp -HHHHHHHHTTSEEEEE
T ss_pred -HHHHHHHHcCCeEEeC
Confidence 6778899999988753
No 205
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.03 E-value=2.3e+02 Score=24.22 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=57.5
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccc--cccCCCCceEEeccC-CCCC-C-Cc----ccccchhhhhc-CCCcEEE
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTHYTA--KSMCGPHVGVEPISD-GFDE-G-GY----AQAKNEDLFLN-FPVNCVV 85 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~--~~~~~~~i~~~~lp~-~~~~-~-~~----~~~~~~~~~l~-~~~~~vi 85 (198)
.-|+-=+-+|-+.|..+||+|-+.+-+... +.++.-++.+..+.. |--. . .+ +..-.+.++.. .++|..+
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i 89 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAI 89 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEe
Confidence 346666788999999999999887755322 122224555555531 1000 0 00 00001111222 5788888
Q ss_pred eCCCcchHHHHHHHhCCCceeecccc
Q 036105 86 YDSFLPWALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 86 ~D~~~~~~~~vA~~~~iP~~~f~~~~ 111 (198)
. .....+..+|--+|+|.+.|.-..
T Consensus 90 ~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 90 G-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred e-cCCcchhhHHhhcCCceEEecCCh
Confidence 8 667788999999999999997544
No 206
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=28.93 E-value=1.4e+02 Score=26.45 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=35.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 036105 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK 46 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~ 46 (198)
.-|+++-.++.|=..-...||+.|.++|++|.+++.+....
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 35788889999999999999999999999999999876543
No 207
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=28.82 E-value=1.2e+02 Score=24.27 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=38.3
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 036105 5 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSM 48 (198)
Q Consensus 5 ~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~ 48 (198)
..-+++.-.|+.|..+=.++++...+++|..|-++++......+
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence 34578889999999999999999999999999999998765543
No 208
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=28.45 E-value=2.1e+02 Score=20.90 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccC---CCCCCCcccccchhhhhc----CCCcEEEeCCCcch
Q 036105 20 NPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISD---GFDEGGYAQAKNEDLFLN----FPVNCVVYDSFLPW 92 (198)
Q Consensus 20 ~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~---~~~~~~~~~~~~~~~~l~----~~~~~vi~D~~~~~ 92 (198)
+|.-.|.++|..+|+. .+......+.+.+++..+.-++. ..|+. .+..--++++.+ .++.+..+|.=-
T Consensus 5 ~~~~~l~~rl~~~g~~--~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~-~D~avvleELa~e~~~~~v~~akVDiD~-- 79 (132)
T PRK11509 5 TPFDALWQRMLARGWT--PVSESRLDDWLTQAPDGVVLLSSDPKRTPEV-SDNPVMIGELLREFPDYTWQVAIADLEQ-- 79 (132)
T ss_pred CccHHHHHHHHHcCCC--ccccccHHHHHhCCCcEEEEeCCCCCcCCcc-ccHHHHHHHHHHHhcCCceEEEEEECCC--
Confidence 4566788999998764 33333233333345666666651 22331 111111222222 236677777643
Q ss_pred HHHHHHHhC---CCceeecc
Q 036105 93 ALDVAKEYG---LYGAAFFT 109 (198)
Q Consensus 93 ~~~vA~~~~---iP~~~f~~ 109 (198)
-.++|.++| ||...|+-
T Consensus 80 ~~~LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 80 SEAIGDRFGVFRFPATLVFT 99 (132)
T ss_pred CHHHHHHcCCccCCEEEEEE
Confidence 378999987 68777754
No 209
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.41 E-value=1.4e+02 Score=19.19 Aligned_cols=33 Identities=24% Similarity=0.538 Sum_probs=26.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLAT 40 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~ 40 (198)
+|++++. ..++..-.+.+++.|.+.|++|.+-.
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~ 35 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDL 35 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEEC
Confidence 5666665 56788889999999999999988744
No 210
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=28.34 E-value=72 Score=24.55 Aligned_cols=26 Identities=15% Similarity=0.432 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCeEEEEecccccccc
Q 036105 23 LQFAKRLASKGVKATLATTHYTAKSM 48 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~~~~~~~~ 48 (198)
.+|.++|.++|++|.++.|+.....+
T Consensus 16 ~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 16 IRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHHHHHHHCCCEEEEEECccHHHHH
Confidence 78999999999999999998655543
No 211
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=28.32 E-value=38 Score=21.89 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=13.4
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 036105 23 LQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~~ 42 (198)
-+|...|..+|+.||=.|..
T Consensus 23 ~eL~~~L~~~Gi~vTQaTiS 42 (70)
T PF01316_consen 23 EELVELLEEEGIEVTQATIS 42 (70)
T ss_dssp HHHHHHHHHTT-T--HHHHH
T ss_pred HHHHHHHHHcCCCcchhHHH
Confidence 47899999999998766543
No 212
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.18 E-value=1.2e+02 Score=26.93 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
++++|+++.-|+--= ---+..||+|++.|+.++++...
T Consensus 265 ~~P~V~Ilcgpgnng-gdg~v~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 265 QWPLVAILCGPGNNG-GDGLVCGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CCceEEEEeCCCCcc-chhHHHHHHHHHcCceeEEEeec
Confidence 457899998877511 11222899999999998887764
No 213
>PRK14098 glycogen synthase; Provisional
Probab=27.92 E-value=1.5e+02 Score=26.54 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=30.3
Q ss_pred CCCCCceEEEEc-----CCCc-cChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 1 MNEDRRHVVLLP-----YPSQ-GHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 1 m~~~~~hvv~~p-----~p~~-GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
|+.+.++|+++. +.=. |=-.=+-.|.+.|+++||+|.++.+.
T Consensus 1 ~~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 1 MSRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 444557777764 3223 33366778999999999999999984
No 214
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=27.63 E-value=8.5 Score=21.35 Aligned_cols=16 Identities=31% Similarity=0.783 Sum_probs=11.7
Q ss_pred EcCCCccChHHHHHHH
Q 036105 11 LPYPSQGHINPLLQFA 26 (198)
Q Consensus 11 ~p~p~~GH~~P~l~La 26 (198)
=+||+||-+||-+++-
T Consensus 16 PTFPGqGP~NPKir~P 31 (39)
T PF08026_consen 16 PTFPGQGPFNPKIRWP 31 (39)
T ss_pred CcCCCCCCCCcccccc
Confidence 4688899888866553
No 215
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=27.45 E-value=1e+02 Score=25.89 Aligned_cols=98 Identities=9% Similarity=0.014 Sum_probs=59.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCceEE-eccCCCCCCCcccccchhhhhc-CCC
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSMCG-PHVGVE-PISDGFDEGGYAQAKNEDLFLN-FPV 81 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~--G~~Vt~~~~~~~~~~~~~-~~i~~~-~lp~~~~~~~~~~~~~~~~~l~-~~~ 81 (198)
+|+++-..+.|-+.=..-+.+.|.++ +.+|++++.+.+.+.++. |.|+-+ .++..-..........+..-++ .++
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~~~~~~~~~~~~l~~~lr~~~y 81 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRRLGHSLREKRY 81 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccccchhhhHHHHHHHHHHHhcCC
Confidence 68999999999999999999999984 899999998877766654 666543 3331100000000011111222 578
Q ss_pred cEEEeCCCcc-hHHHHHHHhCCCce
Q 036105 82 NCVVYDSFLP-WALDVAKEYGLYGA 105 (198)
Q Consensus 82 ~~vi~D~~~~-~~~~vA~~~~iP~~ 105 (198)
|++| |+... .+..++.-.|+|.-
T Consensus 82 D~vi-dl~~~~~s~~l~~~~~~~~r 105 (348)
T PRK10916 82 DRAY-VLPNSFKSALVPFFAGIPHR 105 (348)
T ss_pred CEEE-ECCCcHHHHHHHHHcCCCeE
Confidence 8766 34333 34455666677643
No 216
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=27.44 E-value=1.6e+02 Score=23.07 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=54.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc------cccCC-CCceEEeccCCCCCCCcccccc-----
Q 036105 5 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA------KSMCG-PHVGVEPISDGFDEGGYAQAKN----- 72 (198)
Q Consensus 5 ~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~------~~~~~-~~i~~~~lp~~~~~~~~~~~~~----- 72 (198)
+-.|.++.-++.|=....+.+|-+.+.+|.+|.++---... ..++. +++++.....++.-..-+...+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~ 101 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAR 101 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHH
Confidence 45799999999999999999999999999999987642211 11222 5677777654321100000011
Q ss_pred --h---hhhhc-CCCcEEEeCCCc
Q 036105 73 --E---DLFLN-FPVNCVVYDSFL 90 (198)
Q Consensus 73 --~---~~~l~-~~~~~vi~D~~~ 90 (198)
+ .+.+. .++|.||.|-.+
T Consensus 102 ~~~~~a~~~l~~~~ydlvVLDEi~ 125 (191)
T PRK05986 102 EGWEEAKRMLADESYDLVVLDELT 125 (191)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhh
Confidence 1 11122 578999999754
No 217
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.31 E-value=1.1e+02 Score=22.30 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEec
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGV-KATLATT 41 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~-~Vt~~~~ 41 (198)
...+++.+.....+|.-=+-.++++|.++|. ++.++..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3578899999999999999999999999886 5555553
No 218
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=27.31 E-value=87 Score=24.24 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=29.9
Q ss_pred ccchhhhhcCCCcEEEeCCCc--chHHHHHHHhCCCceeecccc
Q 036105 70 AKNEDLFLNFPVNCVVYDSFL--PWALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 70 ~~~~~~~l~~~~~~vi~D~~~--~~~~~vA~~~~iP~~~f~~~~ 111 (198)
..+++.++..+||+||..... .....-..+.++|++.+....
T Consensus 50 ~~~~E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 50 SPNLEAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp SB-HHHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CccHHHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 445677777789999988776 445566677899999998865
No 219
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=27.26 E-value=2.6e+02 Score=24.78 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCC-CCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCC-C---cchHHH
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCG-PHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDS-F---LPWALD 95 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~-~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~-~---~~~~~~ 95 (198)
-..+++.+.+.|+++..+.+..+...... ..=..+.+|.+..+ .+.....+.++.+ .++|+|+.-. + ......
T Consensus 14 a~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~-~y~d~~~i~~~a~~~~~D~I~pg~g~lse~~~~a~ 92 (472)
T PRK07178 14 AVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLA-GYLNPRRLVNLAVETGCDALHPGYGFLSENAELAE 92 (472)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchh-hhcCHHHHHHHHHHHCCCEEEeCCCCcccCHHHHH
Confidence 45788888889999988887654322110 00123334321111 1111122333333 5788888643 1 123456
Q ss_pred HHHHhCCCcee
Q 036105 96 VAKEYGLYGAA 106 (198)
Q Consensus 96 vA~~~~iP~~~ 106 (198)
+++++|+|++.
T Consensus 93 ~~e~~Gi~~ig 103 (472)
T PRK07178 93 ICAERGIKFIG 103 (472)
T ss_pred HHHHcCCCccC
Confidence 77888888764
No 220
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=27.23 E-value=1.5e+02 Score=26.29 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=34.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
-|+++-.++.|=..-...||..|..+|.+|.+++++.+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 467888899999999999999999999999999997654
No 221
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=26.82 E-value=1.3e+02 Score=21.70 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=23.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 036105 5 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT 44 (198)
Q Consensus 5 ~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~ 44 (198)
+.+|.++-.---| ..|++.|.+.||.|+-+.....
T Consensus 10 ~l~I~iIGaGrVG-----~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 10 RLKIGIIGAGRVG-----TALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp --EEEEECTSCCC-----CHHHHHHHHTTSEEEEESSCHH
T ss_pred ccEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCCc
Confidence 4455555443333 3689999999999988876543
No 222
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.80 E-value=4.4e+02 Score=23.13 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=48.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc----c----CC----CCceEEeccCCCCCCCcccccch
Q 036105 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS----M----CG----PHVGVEPISDGFDEGGYAQAKNE 73 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~----~----~~----~~i~~~~lp~~~~~~~~~~~~~~ 73 (198)
.+++++.-+ .-.+.|++.|.+.|.+|..+.+....+. + .. .++.++.- . ...++
T Consensus 304 krv~i~g~~-----~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~-----~----d~~e~ 369 (435)
T cd01974 304 KKFALYGDP-----DFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPG-----K----DLWHL 369 (435)
T ss_pred CEEEEEcCh-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEEC-----C----CHHHH
Confidence 455555422 3377788888899999977766432221 1 00 01111100 0 11223
Q ss_pred hhhhc-CCCcEEEeCCCcchHHHHHHHhCCCceee
Q 036105 74 DLFLN-FPVNCVVYDSFLPWALDVAKEYGLYGAAF 107 (198)
Q Consensus 74 ~~~l~-~~~~~vi~D~~~~~~~~vA~~~~iP~~~f 107 (198)
.+.++ .++|++|... +...+|+++|||.+..
T Consensus 370 ~~~i~~~~pDliiG~s---~~~~~a~~~gip~v~~ 401 (435)
T cd01974 370 RSLLFTEPVDLLIGNT---YGKYIARDTDIPLVRF 401 (435)
T ss_pred HHHHhhcCCCEEEECc---cHHHHHHHhCCCEEEe
Confidence 34443 5789999765 4678999999998754
No 223
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=26.70 E-value=2e+02 Score=25.24 Aligned_cols=91 Identities=20% Similarity=0.169 Sum_probs=52.3
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEecc-CCCCCCCcccccchhhhhc-
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPIS-DGFDEGGYAQAKNEDLFLN- 78 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp-~~~~~~~~~~~~~~~~~l~- 78 (198)
|.. +++|+++-.-+.-|- |+++|.+.+.-..++..+.|.... . ..... ..+. ......+.++.+
T Consensus 1 ~~~-~~kvLviG~g~reha-----l~~~~~~~~~~~~~~~~pgn~g~~---~--~~~~~~~~~~---~~d~~~l~~~a~~ 66 (426)
T PRK13789 1 MQV-KLKVLLIGSGGRESA-----IAFALRKSNLLSELKVFPGNGGFP---D--DELLPADSFS---ILDKSSVQSFLKS 66 (426)
T ss_pred CCC-CcEEEEECCCHHHHH-----HHHHHHhCCCCCEEEEECCchHHh---c--cccccccCcC---cCCHHHHHHHHHH
Confidence 443 478999998888884 699999888655666666554211 0 00000 0011 111223344444
Q ss_pred CCCcEEEeCCCcch---HHHHHHHhCCCce
Q 036105 79 FPVNCVVYDSFLPW---ALDVAKEYGLYGA 105 (198)
Q Consensus 79 ~~~~~vi~D~~~~~---~~~vA~~~~iP~~ 105 (198)
.++|+||.+.=.+- ..++++++|+|++
T Consensus 67 ~~iD~Vv~g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 67 NPFDLIVVGPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred cCCCEEEECCchHHHHHHHHHHHHcCCCcC
Confidence 57899998754433 3466777899854
No 224
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=26.63 E-value=88 Score=23.66 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCcchHHHHHHHhCCCceeecccc
Q 036105 79 FPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 79 ~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~~~~ 111 (198)
..+++||-+.. +...|+++|+|.+.+.++-
T Consensus 124 ~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 124 EGVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp TT--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred cCCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 67999998863 6799999999998887744
No 225
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=26.55 E-value=1.6e+02 Score=20.46 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=28.9
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 036105 10 LLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK 46 (198)
Q Consensus 10 ~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~ 46 (198)
++-+...|.-.-+++.++.+.++|..|..+|.....+
T Consensus 51 vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 51 VIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 3444567888899999999999999988888765443
No 226
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=26.55 E-value=69 Score=27.72 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=25.6
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 036105 5 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATT 41 (198)
Q Consensus 5 ~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~ 41 (198)
+--|++|.....|+-+-...+|..||++|+-|.-+--
T Consensus 99 ~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieH 135 (379)
T PF03403_consen 99 KFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEH 135 (379)
T ss_dssp -EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE--
T ss_pred CCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEecc
Confidence 4568999999999999999999999999987666543
No 227
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=26.50 E-value=1.1e+02 Score=24.76 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=29.7
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEeccccccc
Q 036105 14 PSQGHINPLLQFAKRLASKGVKATLATTHYTAKS 47 (198)
Q Consensus 14 p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~ 47 (198)
.|-|=..-.+-||..|+++|-+|+++=++.|...
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 3568889999999999999999999999887653
No 228
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=26.25 E-value=1e+02 Score=22.29 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=35.5
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
.+..+-+.|..+.+.+.|.-++.++|.+.-.++.++|+..
T Consensus 45 g~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqp 84 (144)
T PF10657_consen 45 GKLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQP 84 (144)
T ss_pred CceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCC
Confidence 3567889999999999999999999999889999999863
No 229
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=26.05 E-value=78 Score=24.27 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=26.6
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 036105 14 PSQGHINPLLQFAKRLASKGVKATLATTHYTAKSM 48 (198)
Q Consensus 14 p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~ 48 (198)
.+.+...-..+|.+.|.++|++|.++.|+...+.+
T Consensus 8 tGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 8 TGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 34445556679999999999999999988655444
No 230
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=26.02 E-value=1.6e+02 Score=22.15 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=39.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc---cc---ccCC-CCceEEeccC
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT---AK---SMCG-PHVGVEPISD 60 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~---~~---~~~~-~~i~~~~lp~ 60 (198)
-|.++..++.|=....+.+|-+.+.+|.+|.++---.. .. .++. +++.+.....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~ 64 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGR 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCC
Confidence 46788999999999999999999999999999442211 11 1122 5777777653
No 231
>PRK14099 glycogen synthase; Provisional
Probab=25.96 E-value=1.7e+02 Score=26.11 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=28.9
Q ss_pred CCceEEEEc-----CCCccCh-HHHHHHHHHHHhCCCeEEEEecc
Q 036105 4 DRRHVVLLP-----YPSQGHI-NPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 4 ~~~hvv~~p-----~p~~GH~-~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
++++|+++. +.=.|=+ .=+-.|.+.|+++||+|.++.+.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 346777764 4333333 66778999999999999999984
No 232
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.88 E-value=39 Score=22.12 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEec
Q 036105 20 NPLLQFAKRLASKGVKATLATT 41 (198)
Q Consensus 20 ~P~l~La~~L~~~G~~Vt~~~~ 41 (198)
+=|+.|..++.++|..|+|..-
T Consensus 32 iR~M~L~~~wR~~G~~i~F~~L 53 (74)
T COG3433 32 IRMMALLERWRKRGADIDFAQL 53 (74)
T ss_pred HHHHHHHHHHHHcCCcccHHHH
Confidence 4588999999999999998654
No 233
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=25.78 E-value=62 Score=22.52 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCcccccchhhh-hc-CCCcEEEe--CCCc-----
Q 036105 20 NPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEGGYAQAKNEDLF-LN-FPVNCVVY--DSFL----- 90 (198)
Q Consensus 20 ~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~-l~-~~~~~vi~--D~~~----- 90 (198)
.=++.+|+.|.+.|+++ +.|+.....++..++....+-.. ++++ .+++.+. .+ .++|+||. |-..
T Consensus 12 ~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~Gi~~~~v~~~-~~~g---~~~i~~~i~~~g~idlVIn~~~~~~~~~~~ 85 (112)
T cd00532 12 AMLVDLAPKLSSDGFPL--FATGGTSRVLADAGIPVRAVSKR-HEDG---EPTVDAAIAEKGKFDVVINLRDPRRDRCTD 85 (112)
T ss_pred HHHHHHHHHHHHCCCEE--EECcHHHHHHHHcCCceEEEEec-CCCC---CcHHHHHHhCCCCEEEEEEcCCCCcccccC
Confidence 45789999999999876 56666666565566665544211 1101 1223332 33 46787776 3221
Q ss_pred ---chHHHHHHHhCCCceee
Q 036105 91 ---PWALDVAKEYGLYGAAF 107 (198)
Q Consensus 91 ---~~~~~vA~~~~iP~~~f 107 (198)
.-....|.+.|||.++-
T Consensus 86 ~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 86 EDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred CChHHHHHHHHHcCCCEEEC
Confidence 12346788899998753
No 234
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=25.72 E-value=84 Score=25.31 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhCCCeEEEEecccc
Q 036105 19 INPLLQFAKRLASKGVKATLATTHYT 44 (198)
Q Consensus 19 ~~P~l~La~~L~~~G~~Vt~~~~~~~ 44 (198)
+-+++++.+.|.++|+.|-++|....
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 45789999999999999999997643
No 235
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=25.58 E-value=82 Score=28.36 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCceEEecc
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPIS 59 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp 59 (198)
++++|+.|.++|+. +++|......++..+|.+..+.
T Consensus 15 ive~ak~L~~~gve--i~STGGTak~l~eaGi~V~~Vs 50 (515)
T COG0138 15 IVEFAKALVELGVE--ILSTGGTAKLLAEAGIPVTEVS 50 (515)
T ss_pred hHHHHHHHHhCCEE--EEecCCHHHHHHhCCCCCCchh
Confidence 57899999988754 6788777776655566655554
No 236
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=25.57 E-value=1.7e+02 Score=20.90 Aligned_cols=25 Identities=4% Similarity=-0.004 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEecccc
Q 036105 20 NPLLQFAKRLASKGVKATLATTHYT 44 (198)
Q Consensus 20 ~P~l~La~~L~~~G~~Vt~~~~~~~ 44 (198)
...+.|+++-.+|||+|.+++....
T Consensus 18 DTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 18 DTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred ChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 4567888899999999999987643
No 237
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=25.54 E-value=74 Score=30.23 Aligned_cols=33 Identities=21% Similarity=0.045 Sum_probs=27.5
Q ss_pred CCCcEEEeCCCcch--HHHHHHHhCCCceeecccc
Q 036105 79 FPVNCVVYDSFLPW--ALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 79 ~~~~~vi~D~~~~~--~~~vA~~~~iP~~~f~~~~ 111 (198)
.-+|+||+|..|.+ ..++|+++|.+.+.+.+-.
T Consensus 264 G~~D~~vvD~qCi~~~I~eiA~kyG~g~I~tt~r~ 298 (731)
T cd01916 264 GIADVVVVDEQCIRADILEEAQKLGIPVIATNDKI 298 (731)
T ss_pred CCCcEEEEecccCcccHHHHHHHhCCCEEEechhh
Confidence 45899999998754 6799999999999987643
No 238
>PLN02939 transferase, transferring glycosyl groups
Probab=25.47 E-value=1.7e+02 Score=28.79 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=30.7
Q ss_pred CCceEEEE-----cCCCccCh-HHHHHHHHHHHhCCCeEEEEeccc
Q 036105 4 DRRHVVLL-----PYPSQGHI-NPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 4 ~~~hvv~~-----p~p~~GH~-~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
+++||+++ |+.-.|-+ .=.-.|.++|+.+||.|.++++..
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 46788877 44445555 556689999999999999999854
No 239
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=25.44 E-value=2.2e+02 Score=25.28 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCC-CCCCCcccccchhhhhcCCCcEEEeCCCcchHHHHHH
Q 036105 20 NPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDG-FDEGGYAQAKNEDLFLNFPVNCVVYDSFLPWALDVAK 98 (198)
Q Consensus 20 ~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~-~~~~~~~~~~~~~~~l~~~~~~vi~D~~~~~~~~vA~ 98 (198)
.-...|++.|.+.|..|..+.+....+..+. ++.. +-. ....++++.++ ++|++|.+. +...+|+
T Consensus 321 ~~~~~la~~L~elG~~v~~~~~~~~~~~~~~-------~~~~~i~~---~D~~~le~~~~-~~dliig~s---~~~~~a~ 386 (455)
T PRK14476 321 DLLLALGSFLAEMGAEIVAAVTTTKSPALED-------LPAEEVLI---GDLEDLEELAE-GADLLITNS---HGRQAAE 386 (455)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCcHHHHh-------CCcCcEEe---CCHHHHHHhcc-CCCEEEECc---hhHHHHH
Confidence 4566788999999999888776543222211 1100 000 01223445554 789999876 5678999
Q ss_pred HhCCCcee
Q 036105 99 EYGLYGAA 106 (198)
Q Consensus 99 ~~~iP~~~ 106 (198)
++|||.+-
T Consensus 387 ~~gip~~~ 394 (455)
T PRK14476 387 RLGIPLLR 394 (455)
T ss_pred HcCCCEEE
Confidence 99999985
No 240
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.18 E-value=1.8e+02 Score=18.25 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=26.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASKGVKATLAT 40 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~ 40 (198)
+++....+.|=-.-...|++.|++.|.+|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 344455577778888999999999999988776
No 241
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=25.04 E-value=1.1e+02 Score=23.85 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=23.2
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 15 SQGHINPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 15 ~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
+.|=+--.+++.++|.+.|++|+++.|+...
T Consensus 10 s~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 10 SHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred HHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 3333333459999999999999999987653
No 242
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=24.76 E-value=1.5e+02 Score=21.16 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=23.9
Q ss_pred hhhhhc-CCCcEEEeCCCc--chHHHHHHHhCCCceeecccc
Q 036105 73 EDLFLN-FPVNCVVYDSFL--PWALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 73 ~~~~l~-~~~~~vi~D~~~--~~~~~vA~~~~iP~~~f~~~~ 111 (198)
++.++. ..|.+||++-+. .+..++|++.|+|.....-.+
T Consensus 74 l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~~t 115 (127)
T PF02603_consen 74 LEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTPLST 115 (127)
T ss_dssp HHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEESS-H
T ss_pred HHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCCcH
Confidence 334444 567788888765 377899999999988775543
No 243
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.57 E-value=3.8e+02 Score=21.63 Aligned_cols=37 Identities=19% Similarity=0.017 Sum_probs=28.7
Q ss_pred CCCcEEEeCCCcc--hHHHHHHHhCCCceeecccchHHH
Q 036105 79 FPVNCVVYDSFLP--WALDVAKEYGLYGAAFFTNSATVC 115 (198)
Q Consensus 79 ~~~~~vi~D~~~~--~~~~vA~~~~iP~~~f~~~~a~~~ 115 (198)
.++.||+++.... .+..+|++.|++.+.+-+.+....
T Consensus 216 ~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~ 254 (266)
T cd01018 216 KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWE 254 (266)
T ss_pred cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHH
Confidence 6889999998665 466899999999988876654333
No 244
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=24.55 E-value=91 Score=21.46 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLA 39 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~ 39 (198)
.++.++.+......+...+.++++.+.+++-++.++
T Consensus 50 ~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv 85 (121)
T PF02310_consen 50 ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV 85 (121)
T ss_dssp TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE
T ss_pred CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 356778888777888888888888877765444333
No 245
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=24.50 E-value=1.5e+02 Score=25.66 Aligned_cols=38 Identities=18% Similarity=0.435 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS 47 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~ 47 (198)
...|||++=+...- ++.|.|++||++||++-.....+.
T Consensus 178 ~~~~Vv~iD~GvK~------nIlr~L~~rg~~vtVVP~~t~~ee 215 (368)
T COG0505 178 PGKHVVVIDFGVKR------NILRELVKRGCRVTVVPADTSAEE 215 (368)
T ss_pred CCcEEEEEEcCccH------HHHHHHHHCCCeEEEEcCCCCHHH
Confidence 35688888887663 568999999999999876654444
No 246
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=24.46 E-value=1e+02 Score=26.33 Aligned_cols=31 Identities=16% Similarity=-0.067 Sum_probs=21.2
Q ss_pred CCCcEE-EeCC--CcchHHHHHHHh--CCCceeecc
Q 036105 79 FPVNCV-VYDS--FLPWALDVAKEY--GLYGAAFFT 109 (198)
Q Consensus 79 ~~~~~v-i~D~--~~~~~~~vA~~~--~iP~~~f~~ 109 (198)
.+|||+ +.|+ |......-+++. |||.++|.+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~ 110 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYIL 110 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC
Confidence 577764 5586 444566677777 799888854
No 247
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=24.45 E-value=1.1e+02 Score=24.56 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=39.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCce
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSMCG-PHVG 54 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~--G~~Vt~~~~~~~~~~~~~-~~i~ 54 (198)
+|+++-.-+.|-+.=+..+.+.|.++ +.+|++++.+.+...++. +.|+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id 51 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVD 51 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccC
Confidence 47888888999999999999999995 489999999877766554 5554
No 248
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=24.41 E-value=3.5e+02 Score=23.73 Aligned_cols=78 Identities=10% Similarity=0.146 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccccccccC--------CCCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEeCCCc
Q 036105 20 NPLLQFAKRLASKGVKATLATTHYTAKSMC--------GPHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVYDSFL 90 (198)
Q Consensus 20 ~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~--------~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~D~~~ 90 (198)
.-...|++.|.+.|.++..+.+....+..+ .......-+. . ....++++.++ .++|++|.+.
T Consensus 310 ~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~----~---~d~~e~~~~l~~~~~dliiG~s-- 380 (429)
T cd03466 310 DFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILD----G---ADFFDIESYAKELKIDVLIGNS-- 380 (429)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEe----C---CCHHHHHHHHHhcCCCEEEECc--
Confidence 445667777778898886666543222110 0000000000 0 01223445555 5789999886
Q ss_pred chHHHHHHHhCCCceee
Q 036105 91 PWALDVAKEYGLYGAAF 107 (198)
Q Consensus 91 ~~~~~vA~~~~iP~~~f 107 (198)
+...+|+++|||.+..
T Consensus 381 -~~~~~a~~~~ip~~~~ 396 (429)
T cd03466 381 -YGRRIAEKLGIPLIRI 396 (429)
T ss_pred -hhHHHHHHcCCCEEEe
Confidence 3578999999998744
No 249
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=24.35 E-value=1.2e+02 Score=19.62 Aligned_cols=31 Identities=23% Similarity=0.111 Sum_probs=22.4
Q ss_pred CCCcEEEeCCCcc--hHHHHHHHhCCCceeecc
Q 036105 79 FPVNCVVYDSFLP--WALDVAKEYGLYGAAFFT 109 (198)
Q Consensus 79 ~~~~~vi~D~~~~--~~~~vA~~~~iP~~~f~~ 109 (198)
.++..||.+.-.. -+.-+|+++|||.++=..
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 5677888887554 366899999999986543
No 250
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=24.31 E-value=1e+02 Score=23.70 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=26.6
Q ss_pred CCCccChHH-HHHHHHHHHh-CCCeEEEEecccccc
Q 036105 13 YPSQGHINP-LLQFAKRLAS-KGVKATLATTHYTAK 46 (198)
Q Consensus 13 ~p~~GH~~P-~l~La~~L~~-~G~~Vt~~~~~~~~~ 46 (198)
..+.||... ..++.+.|.+ +|++|.++.|+...+
T Consensus 6 itGsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 6 ITGSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred EEccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 345588866 8899999985 699999999986553
No 251
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=24.26 E-value=4.4e+02 Score=22.34 Aligned_cols=35 Identities=20% Similarity=0.090 Sum_probs=23.7
Q ss_pred CCcEEEeC-CCcchHHHHHHHhCCCceeecccchHH
Q 036105 80 PVNCVVYD-SFLPWALDVAKEYGLYGAAFFTNSATV 114 (198)
Q Consensus 80 ~~~~vi~D-~~~~~~~~vA~~~~iP~~~f~~~~a~~ 114 (198)
...++++. ....++..+.+++|+|++.+.+.+...
T Consensus 202 ~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G~~~ 237 (399)
T cd00316 202 KLNLVLCRESGLYLARYLEEKYGIPYILINPIGLEA 237 (399)
T ss_pred cEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcCHHH
Confidence 34556655 455677788888899988877666443
No 252
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=24.22 E-value=76 Score=25.75 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=24.9
Q ss_pred ceEEEEcCCCccCh-HHHHHHHHHHHhCCCeEEEEec
Q 036105 6 RHVVLLPYPSQGHI-NPLLQFAKRLASKGVKATLATT 41 (198)
Q Consensus 6 ~hvv~~p~p~~GH~-~P~l~La~~L~~~G~~Vt~~~~ 41 (198)
.+|+++.-++- = -=-+.+||.|+++|++|+++..
T Consensus 61 ~~V~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGN--NGGDGLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCC--CchhHHHHHHHHHHCCCeEEEEEc
Confidence 46777776553 1 1246789999999999999973
No 253
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=24.16 E-value=68 Score=27.31 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=26.5
Q ss_pred EcCCCc-cChHHHHHHHHHHHhCCCeEEEEeccc
Q 036105 11 LPYPSQ-GHINPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 11 ~p~p~~-GH~~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
+|+|.. |.-+=+.++++.|+++ |+||+++-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 566665 8899999999999776 8999998754
No 254
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=24.08 E-value=83 Score=22.66 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCeEEEEeccc
Q 036105 24 QFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 24 ~La~~L~~~G~~Vt~~~~~~ 43 (198)
-+|.+|++.|++|+++....
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 46889999999999999876
No 255
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.93 E-value=1.7e+02 Score=20.15 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=27.0
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 11 LPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 11 ~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
+-....|.-.-+++.++...++|..|..+|...+.
T Consensus 51 I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 51 IAISQSGETADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred EEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 33445677778999999999999998888876443
No 256
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=23.86 E-value=2.3e+02 Score=28.16 Aligned_cols=92 Identities=24% Similarity=0.155 Sum_probs=56.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCcccccchhhhhc-CCCcEEEe
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEGGYAQAKNEDLFLN-FPVNCVVY 86 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~-~~~~~vi~ 86 (198)
.+++... -.+=.-++.+|+.|.+.|++| +.|+...+.+...+|....+-. ..+ ..+++.+.++ .++|+||.
T Consensus 939 ~~~~~~~-~~~k~~~~~~~~~l~~~g~~~--~at~gta~~l~~~gi~~~~~~~-~~~----~~~~~~~~i~~~~i~lvin 1010 (1050)
T TIGR01369 939 SVLLSVR-DKDKEELLDLARKLAEKGYKL--YATEGTAKFLGEAGIKPELVLK-VSE----GRPNILDLIKNGEIELVIN 1010 (1050)
T ss_pred eEEEEec-cCchHHHHHHHHHHHHCCCEE--EEechHHHHHHHCCCceEEEee-cCC----CCccHHHHHHcCCeEEEEE
Confidence 3444432 234566889999999999875 4566555555445665544321 111 1234555555 67889988
Q ss_pred CCC--------cchHHHHHHHhCCCceee
Q 036105 87 DSF--------LPWALDVAKEYGLYGAAF 107 (198)
Q Consensus 87 D~~--------~~~~~~vA~~~~iP~~~f 107 (198)
... ..+....|-++|||.++-
T Consensus 1011 ~~~~~~~~~~~g~~iRr~Ai~~~ip~~t~ 1039 (1050)
T TIGR01369 1011 TTSKGAGTATDGYKIRREALDYGVPLITT 1039 (1050)
T ss_pred CCCCCcccccccHHHHHHHHHcCCCEEec
Confidence 654 234567899999999843
No 257
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=23.69 E-value=1.8e+02 Score=20.32 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=27.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 5 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 5 ~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
...++++.+... +...++-++.|.+.|.+++++...
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 345677766444 366789999999999999998864
No 258
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=23.68 E-value=99 Score=25.31 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=28.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
.+++++.. +. =+.|++.+++.|+++|.+|+++....+.
T Consensus 99 ~~~llIaG-Gi-GiaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 99 GTVVCVGG-GV-GIAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred CeEEEEeC-cC-cHHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 36666652 33 3899999999999999899988765444
No 259
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=23.65 E-value=1.6e+02 Score=21.94 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=44.0
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccc---cCC--CCceEEecc-CCCC
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKS---MCG--PHVGVEPIS-DGFD 63 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~--G~~Vt~~~~~~~~~~---~~~--~~i~~~~lp-~~~~ 63 (198)
...+|++|.....+|+.=.+.+.+.+... .+++.+..-.-.... ++. +++++..++ ...|
T Consensus 58 n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn~s~YP 125 (142)
T PF07801_consen 58 NSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFNFSKYP 125 (142)
T ss_pred cCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECCCccCc
Confidence 45689999999999999999999999986 477777765544433 322 667777775 3444
No 260
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.47 E-value=2e+02 Score=22.69 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=27.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
-|+++..|.+--=.-+..||+.|...|+.|-++.-.
T Consensus 110 iVaFvgSpi~esedeLirlak~lkknnVAidii~fG 145 (243)
T COG5148 110 IVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFG 145 (243)
T ss_pred EEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehh
Confidence 367788888877788888888888888777766643
No 261
>PLN02650 dihydroflavonol-4-reductase
Probab=23.39 E-value=1.4e+02 Score=24.93 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=26.1
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATT 41 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~ 41 (198)
|.+++.+|++.-. .|.+= .+|+++|+++|++|+.+.-
T Consensus 1 ~~~~~k~iLVTGa--tGfIG--s~l~~~L~~~G~~V~~~~r 37 (351)
T PLN02650 1 MGSQKETVCVTGA--SGFIG--SWLVMRLLERGYTVRATVR 37 (351)
T ss_pred CCCCCCEEEEeCC--cHHHH--HHHHHHHHHCCCEEEEEEc
Confidence 7788888766553 34332 4578999999999987653
No 262
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=23.28 E-value=3.6e+02 Score=20.87 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=45.1
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEecc
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPIS 59 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp 59 (198)
|-....+|.+---|+.|-..-.+.++..|..+|++|-=+.|+....-=..-+++++.+.
T Consensus 1 ~~~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 1 MIKMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CCCcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 44556789999999999999999999999999999887776654432112466677665
No 263
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=23.18 E-value=2e+02 Score=22.06 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=22.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 036105 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLAT 40 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~ 40 (198)
+-||++ .-..|--.-+..+|++|+++|+.|.+.-
T Consensus 15 ~~Vvv~-~d~~G~~~~~~~~ad~lA~~Gy~v~~pD 48 (218)
T PF01738_consen 15 PAVVVI-HDIFGLNPNIRDLADRLAEEGYVVLAPD 48 (218)
T ss_dssp EEEEEE--BTTBS-HHHHHHHHHHHHTT-EEEEE-
T ss_pred CEEEEE-cCCCCCchHHHHHHHHHHhcCCCEEecc
Confidence 334444 4577888888899999999997665543
No 264
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=23.09 E-value=1.8e+02 Score=20.00 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=27.3
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 036105 9 VLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT 44 (198)
Q Consensus 9 v~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~ 44 (198)
+++-+...|+--.++++++.+.++|..+..+|....
T Consensus 63 ~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 63 VVIAISFSGETKETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 344445667778899999999999999888887543
No 265
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=23.07 E-value=2.5e+02 Score=23.72 Aligned_cols=84 Identities=14% Similarity=0.138 Sum_probs=49.1
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccccc--------cCCCCceEEeccCCCCCCCcccccchhhhhc------CCC
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTHYTAKS--------MCGPHVGVEPISDGFDEGGYAQAKNEDLFLN------FPV 81 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~--------~~~~~i~~~~lp~~~~~~~~~~~~~~~~~l~------~~~ 81 (198)
+||-.-.+.+-+.-+.+|-+++++.+++.-.. ++..+|++..++|.. ...+++ -.-
T Consensus 126 h~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa----------~~~~~~~vd~VivGa 195 (301)
T COG1184 126 HSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSA----------VGAFMSRVDKVLVGA 195 (301)
T ss_pred ecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechH----------HHHHHHhCCEEEECc
Confidence 34556667777777778877788777643221 122567777776421 111111 234
Q ss_pred cEEEeCCCc------chHHHHHHHhCCCceeecc
Q 036105 82 NCVVYDSFL------PWALDVAKEYGLYGAAFFT 109 (198)
Q Consensus 82 ~~vi~D~~~------~~~~~vA~~~~iP~~~f~~ 109 (198)
|+|..|.+. .-....|+++|+|.++..-
T Consensus 196 d~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~ae 229 (301)
T COG1184 196 DAILANGALVNKIGTSPLALAARELRVPFYVVAE 229 (301)
T ss_pred cceecCCcEEeccchHHHHHHHHHhCCCEEEEee
Confidence 666667432 2234678999999987643
No 266
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=23.05 E-value=2.1e+02 Score=22.98 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=30.2
Q ss_pred CCCceEEEEcCC--CccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 3 EDRRHVVLLPYP--SQGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 3 ~~~~hvv~~p~p--~~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
.+..+++.+..+ +.|=-.=..+||..|++.|.+|-++-..
T Consensus 100 ~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 345677666654 4466677799999999999999988654
No 267
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=23.02 E-value=2.4e+02 Score=20.69 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccc-cCCCC----ceEEeccCCCCCCCcccccc---hhhhhc----CCC-cEEEeCC
Q 036105 22 LLQFAKRLASKGVKATLATTHYTAKS-MCGPH----VGVEPISDGFDEGGYAQAKN---EDLFLN----FPV-NCVVYDS 88 (198)
Q Consensus 22 ~l~La~~L~~~G~~Vt~~~~~~~~~~-~~~~~----i~~~~lp~~~~~~~~~~~~~---~~~~l~----~~~-~~vi~D~ 88 (198)
+.++-+.|.++|+.+.++|...+... ++..+ +..+...+.... ..++ +...++ .+- .++|-|.
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~~~~~l~~~~l~~~f~~~~~~~~~~~----~kp~p~~~~~~~~~~~~~~~~~v~vgD~ 167 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKNAPTVLEKLGLIDYFDAIVDPAEIKK----GKPDPEIFLAAAEGLGVSPSECIGIEDA 167 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCccHHHHHHhcCcHhhCcEEEehhhcCC----CCCChHHHHHHHHHcCCCHHHeEEEecC
Confidence 46677889999999999886433221 12222 222211111110 1111 122222 122 3556665
Q ss_pred CcchHHHHHHHhCCCceee
Q 036105 89 FLPWALDVAKEYGLYGAAF 107 (198)
Q Consensus 89 ~~~~~~~vA~~~~iP~~~f 107 (198)
.+-..-|++.|++.+..
T Consensus 168 --~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 168 --QAGIEAIKAAGMFAVGV 184 (185)
T ss_pred --HHHHHHHHHcCCEEEec
Confidence 46778899999987753
No 268
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=23.00 E-value=1.1e+02 Score=24.69 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=60.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCC--Cc-cc-ccchhhhhcC--C
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSMCGPHVGVEPISDGFDEG--GY-AQ-AKNEDLFLNF--P 80 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~~~~~~~i~~~~lp~~~~~~--~~-~~-~~~~~~~l~~--~ 80 (198)
=|++--+|+.|-..-.-+||+.|.+++++|..++.... +.++ -++.+|-. .. ++ .+.....+.. +
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~--------~~i~-~DEslpi~ke~yres~~ks~~rlldSalk 73 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL--------RGIL-WDESLPILKEVYRESFLKSVERLLDSALK 73 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh--------hhee-cccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 36677899999999999999999999998776664211 0111 00111110 00 00 0111112221 2
Q ss_pred CcEEEeCCCcch------HHHHHHHhCCCceeecccchHHHHHHHh
Q 036105 81 VNCVVYDSFLPW------ALDVAKEYGLYGAAFFTNSATVCNIFCR 120 (198)
Q Consensus 81 ~~~vi~D~~~~~------~~~vA~~~~iP~~~f~~~~a~~~~~~~~ 120 (198)
-.+||+|...+. ..-.|++++.++.+.......-.++...
T Consensus 74 n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN 119 (261)
T COG4088 74 NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN 119 (261)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh
Confidence 238999976653 2346778889988887766554444444
No 269
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=22.86 E-value=87 Score=24.91 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCeEEEEec
Q 036105 23 LQFAKRLASKGVKATLATT 41 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~ 41 (198)
..+|++|+++|++|+++..
T Consensus 29 ~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHCCCEEEEEcC
Confidence 4689999999999998753
No 270
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.86 E-value=1.8e+02 Score=21.78 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=28.6
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 036105 10 LLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK 46 (198)
Q Consensus 10 ~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~ 46 (198)
++-+...|.-.-++++++.+.++|..|..+|.....+
T Consensus 76 ~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 76 LIAISGSGETESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred EEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 3444456888889999999999999998888765443
No 271
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=22.86 E-value=2.8e+02 Score=21.24 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=52.7
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe---ccc---cccccCCCCceEEeccCCCCCCCcccc---cchh
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLAT---THY---TAKSMCGPHVGVEPISDGFDEGGYAQA---KNED 74 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~---~~~---~~~~~~~~~i~~~~lp~~~~~~~~~~~---~~~~ 74 (198)
++.-|.++.-++.|=..-.+.+|-+.+.+|.+|.++- ... ....++..++++.....++.-...+.. ....
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 3456888999999999999999999999999997653 221 111122235777766544321000000 0011
Q ss_pred -------hhhc-CCCcEEEeCCCc
Q 036105 75 -------LFLN-FPVNCVVYDSFL 90 (198)
Q Consensus 75 -------~~l~-~~~~~vi~D~~~ 90 (198)
+.+. .++|.||.|-..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~ 107 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELT 107 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhH
Confidence 1121 578999999754
No 272
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.79 E-value=1.2e+02 Score=22.98 Aligned_cols=48 Identities=8% Similarity=0.100 Sum_probs=28.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc-ccccCCCCceEEecc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT-AKSMCGPHVGVEPIS 59 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~-~~~~~~~~i~~~~lp 59 (198)
+++++. +-|.+.| |+.+|.++|.+|+.+..+.. ...+.+.-=+|+.+.
T Consensus 108 ~~vLvS--gD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~ 156 (160)
T TIGR00288 108 AVALVT--RDADFLP---VINKAKENGKETIVIGAEPGFSTALQNSADIAIILG 156 (160)
T ss_pred EEEEEe--ccHhHHH---HHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCC
Confidence 344444 5666665 57788889999999997642 223322111566554
No 273
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.39 E-value=1.4e+02 Score=23.56 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=28.2
Q ss_pred ccchhhhhcCCCcEEEeCCCcch--HH-HHHHHhCCCceeeccc
Q 036105 70 AKNEDLFLNFPVNCVVYDSFLPW--AL-DVAKEYGLYGAAFFTN 110 (198)
Q Consensus 70 ~~~~~~~l~~~~~~vi~D~~~~~--~~-~vA~~~~iP~~~f~~~ 110 (198)
..+++.++..+||+||....... .. .+-+..|+|++.+...
T Consensus 64 ~~n~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 64 TPNYEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCCHHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 45677777778999998754432 22 3444589999888754
No 274
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=22.30 E-value=1.7e+02 Score=19.49 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHh--CCCeEEEEecccccc
Q 036105 19 INPLLQFAKRLAS--KGVKATLATTHYTAK 46 (198)
Q Consensus 19 ~~P~l~La~~L~~--~G~~Vt~~~~~~~~~ 46 (198)
+.||+.+.+.+.+ .+.+|+++-...+.+
T Consensus 8 IaP~~s~l~~~~~~~~~~~v~l~~~~r~~~ 37 (109)
T PF00175_consen 8 IAPFLSMLRYLLERNDNRKVTLFYGARTPE 37 (109)
T ss_dssp GHHHHHHHHHHHHHTCTSEEEEEEEESSGG
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEcccc
Confidence 6899999999995 568899887655444
No 275
>PRK11519 tyrosine kinase; Provisional
Probab=22.29 E-value=1.8e+02 Score=27.47 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=32.9
Q ss_pred CCceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 036105 4 DRRHVVLLPY--PSQGHINPLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 4 ~~~hvv~~p~--p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
++.++++++. |+.|=-.-..+||..|+..|.+|-++-...
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4567777776 677888889999999999999999987653
No 276
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=22.14 E-value=2.7e+02 Score=23.66 Aligned_cols=40 Identities=10% Similarity=0.237 Sum_probs=33.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK 46 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~ 46 (198)
.|-+--.|+-|--.-.=.|.+.|..+||+|.++..+..+.
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 3556668889999999999999999999999998776554
No 277
>PRK07454 short chain dehydrogenase; Provisional
Probab=22.03 E-value=2.4e+02 Score=21.77 Aligned_cols=39 Identities=18% Similarity=0.088 Sum_probs=26.2
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
|...+.+.+++.- +.|.+ =..++++|+++|++|+++.-.
T Consensus 1 ~~~~~~k~vlItG-~sg~i--G~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 1 MSLNSMPRALITG-ASSGI--GKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCCCCCEEEEeC-CCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 5555566666654 23332 367899999999998887643
No 278
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=21.91 E-value=3.6e+02 Score=24.09 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=25.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEE
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASKGVKATL 38 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~ 38 (198)
|+.-|..+.|-..=.+.|.+.|++||++|-=
T Consensus 4 vIAg~~SG~GKTTvT~glm~aL~~rg~~Vqp 34 (451)
T COG1797 4 VIAGTSSGSGKTTVTLGLMRALRRRGLKVQP 34 (451)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhcCCcccc
Confidence 3445667788899999999999999988754
No 279
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=21.84 E-value=1.8e+02 Score=21.96 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=36.8
Q ss_pred HHHHHHHh---CCCeEEEEeccccccccCC---CCceEEec--cC---CCCCC-----CcccccchhhhhcCCCcEEEeC
Q 036105 24 QFAKRLAS---KGVKATLATTHYTAKSMCG---PHVGVEPI--SD---GFDEG-----GYAQAKNEDLFLNFPVNCVVYD 87 (198)
Q Consensus 24 ~La~~L~~---~G~~Vt~~~~~~~~~~~~~---~~i~~~~l--p~---~~~~~-----~~~~~~~~~~~l~~~~~~vi~D 87 (198)
.|++.+.+ .+.+|-+++++.....+.. ++++..-+ +. .++.. +......+.+.++...|+||+|
T Consensus 14 ~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 14 FLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred HHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhhhhhcCCCceEEEEC
Confidence 45566655 5678999999987765543 33333322 21 11211 1112223444445678999999
Q ss_pred C-Cc
Q 036105 88 S-FL 90 (198)
Q Consensus 88 ~-~~ 90 (198)
. |+
T Consensus 94 PPFl 97 (162)
T PF10237_consen 94 PPFL 97 (162)
T ss_pred CCCC
Confidence 7 44
No 280
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=21.84 E-value=1.1e+02 Score=26.01 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=26.8
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
|+.+...|+++-..-. =+.+|..|+++|++|+++--.
T Consensus 3 ~~~~~~dViIVGaG~~-----Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 3 MEKEHTDIAVIGGGPA-----GLAAAIALARAGASVALVAPE 39 (388)
T ss_pred CCCCCCCEEEECcCHH-----HHHHHHHHhcCCCeEEEEeCC
Confidence 6666667877755433 367788899999999998653
No 281
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=21.83 E-value=3.2e+02 Score=23.64 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHh--CCCeEE---EEeccccccc--cCCCCceEEeccCCCCCCCccc------ccchhh-hh--------
Q 036105 20 NPLLQFAKRLAS--KGVKAT---LATTHYTAKS--MCGPHVGVEPISDGFDEGGYAQ------AKNEDL-FL-------- 77 (198)
Q Consensus 20 ~P~l~La~~L~~--~G~~Vt---~~~~~~~~~~--~~~~~i~~~~lp~~~~~~~~~~------~~~~~~-~l-------- 77 (198)
.=-+.+|++|.+ +|++|. ++.+..-.++ ++..+ .+..+| .+|+.. ..++.. ++
T Consensus 11 ~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g-~~~~~~----sgg~~~~~~~~~~~~~~~gl~~~~~~~~~ 85 (396)
T TIGR03492 11 LIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIG-PTKELP----SGGFSYQSLRGLLRDLRAGLVGLTLGQWR 85 (396)
T ss_pred HHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeC-CCCCCC----CCCccCCCHHHHHHHHHhhHHHHHHHHHH
Confidence 445788999988 699999 9988654322 11122 344444 333311 111111 11
Q ss_pred --c-C--CCcEEEeCCCcchHHHHHHHhCCCceee
Q 036105 78 --N-F--PVNCVVYDSFLPWALDVAKEYGLYGAAF 107 (198)
Q Consensus 78 --~-~--~~~~vi~D~~~~~~~~vA~~~~iP~~~f 107 (198)
+ . ++|+||.=--+. +.-.|...|+|.+.+
T Consensus 86 ~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~ 119 (396)
T TIGR03492 86 ALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFV 119 (396)
T ss_pred HHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEE
Confidence 1 3 778777533222 556777789999984
No 282
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.42 E-value=1.8e+02 Score=18.21 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=26.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATT 41 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~ 41 (198)
.|++++.. ..+..-.+.+++.|.+.|..|-+...
T Consensus 3 ~v~i~~~~-~~~~~~a~~i~~~Lr~~g~~v~~~~~ 36 (91)
T cd00859 3 DVYVVPLG-EGALSEALELAEQLRDAGIKAEIDYG 36 (91)
T ss_pred cEEEEEcC-hHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 46666654 57788899999999999998876443
No 283
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=21.39 E-value=2.5e+02 Score=21.50 Aligned_cols=41 Identities=17% Similarity=0.358 Sum_probs=32.8
Q ss_pred CCCCCceE-EEEcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 036105 1 MNEDRRHV-VLLPYPSQGHINPLLQFAKRLASKGVKATLATT 41 (198)
Q Consensus 1 m~~~~~hv-v~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~ 41 (198)
||..++.| .++-+.+.|=..=+..|.++|..+|++|-.+--
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 77776654 566668889999999999999999998877654
No 284
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=21.36 E-value=1e+02 Score=25.43 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATT 41 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~ 41 (198)
.+..-++++-...|= =.++|+.|+++|+++.++.-
T Consensus 4 ~~~~~~lITGASsGI---G~~~A~~lA~~g~~liLvaR 38 (265)
T COG0300 4 MKGKTALITGASSGI---GAELAKQLARRGYNLILVAR 38 (265)
T ss_pred CCCcEEEEECCCchH---HHHHHHHHHHCCCEEEEEeC
Confidence 334455566555542 26789999999999998874
No 285
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=21.32 E-value=1.4e+02 Score=24.99 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=25.7
Q ss_pred CCCcEEEeCCCcch-----HHHHHHHhCCCceeecccc
Q 036105 79 FPVNCVVYDSFLPW-----ALDVAKEYGLYGAAFFTNS 111 (198)
Q Consensus 79 ~~~~~vi~D~~~~~-----~~~vA~~~~iP~~~f~~~~ 111 (198)
.++-+||.|.|..- ..+.|.+.+||+|.+.-..
T Consensus 147 ~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 147 QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 67789999998863 3466779999999987543
No 286
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=21.32 E-value=78 Score=23.41 Aligned_cols=20 Identities=30% Similarity=0.243 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCeEEEEeccc
Q 036105 24 QFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 24 ~La~~L~~~G~~Vt~~~~~~ 43 (198)
.+|..|+.+|++|++.+...
T Consensus 13 AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 13 ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999864
No 287
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=21.22 E-value=3.4e+02 Score=19.87 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=28.5
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 9 VLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 9 v~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
+++-+...|.-.-+++.++.+.++|..+..+|.....
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 4455556788888999999999999988888875443
No 288
>PRK10867 signal recognition particle protein; Provisional
Probab=21.20 E-value=2.3e+02 Score=25.13 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=34.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEecccccc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASK-GVKATLATTHYTAK 46 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~-G~~Vt~~~~~~~~~ 46 (198)
-|+++-.++.|=..-...||..|+.+ |.+|.+++.+....
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 46778888899999999999999998 99999999886554
No 289
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=21.19 E-value=1.2e+02 Score=25.14 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEecccc
Q 036105 18 HINPLLQFAKRLASKGVKATLATTHYT 44 (198)
Q Consensus 18 H~~P~l~La~~L~~~G~~Vt~~~~~~~ 44 (198)
.+-++++|.+.|.++|++|-++|...-
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e 172 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLK 172 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCch
Confidence 456899999999999999999997643
No 290
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=21.19 E-value=72 Score=25.47 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeccc
Q 036105 21 PLLQFAKRLASKGVKATLATTHY 43 (198)
Q Consensus 21 P~l~La~~L~~~G~~Vt~~~~~~ 43 (198)
++++|.+.+.++|+.|.|+|...
T Consensus 119 ~a~~l~~~~~~~G~~V~~iT~R~ 141 (229)
T PF03767_consen 119 GALELYNYARSRGVKVFFITGRP 141 (229)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCC
Confidence 38899999999999999999754
No 291
>PRK08265 short chain dehydrogenase; Provisional
Probab=21.10 E-value=2.4e+02 Score=22.32 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 036105 1 MNEDRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATT 41 (198)
Q Consensus 1 m~~~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~ 41 (198)
|.+-+.+.+++.-.+.| -=..+|++|+++|++|+++.-
T Consensus 1 m~~~~~k~vlItGas~g---IG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 1 MIGLAGKVAIVTGGATL---IGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CCCCCCCEEEEECCCCh---HHHHHHHHHHHCCCEEEEEeC
Confidence 54444456667665443 346789999999999888754
No 292
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=21.08 E-value=1.7e+02 Score=24.33 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=34.3
Q ss_pred hhhc-CCCcEEEeCCCcchH-------HHHHHHhCCCceeecccchHHHHHHHh
Q 036105 75 LFLN-FPVNCVVYDSFLPWA-------LDVAKEYGLYGAAFFTNSATVCNIFCR 120 (198)
Q Consensus 75 ~~l~-~~~~~vi~D~~~~~~-------~~vA~~~~iP~~~f~~~~a~~~~~~~~ 120 (198)
.+++ ..--++|+|..++.. ..-|++.||++..+-..+|...++..+
T Consensus 72 ~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~S 125 (275)
T COG0313 72 PLLKKGKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSAS 125 (275)
T ss_pred HHHhcCCeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHc
Confidence 4444 324489999887642 356788999999999999988888765
No 293
>PRK05920 aromatic acid decarboxylase; Validated
Probab=20.99 E-value=1.3e+02 Score=23.82 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=29.1
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 036105 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK 46 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~ 46 (198)
.+|++- ..+.....=..++.++|.+.|++|+++.|.....
T Consensus 4 krIllg-ITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~ 43 (204)
T PRK05920 4 KRIVLA-ITGASGAIYGVRLLECLLAADYEVHLVISKAAQK 43 (204)
T ss_pred CEEEEE-EeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHH
Confidence 344433 4445555677899999999999999999986544
No 294
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=20.92 E-value=1.1e+02 Score=22.78 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=23.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 5 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 5 ~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
..+|+++- -|.+ -.+.++.|.+.|++||++...
T Consensus 13 ~~~vlVvG---GG~v--a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIG---GGKI--AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEEC---CCHH--HHHHHHHHHhCCCEEEEEcCc
Confidence 34566653 3333 377899999999999999643
No 295
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=20.80 E-value=79 Score=22.20 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=23.0
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 036105 11 LPYPSQGHINPLLQFAKRLASKGVKATLATT 41 (198)
Q Consensus 11 ~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~ 41 (198)
.-+|++|+++=-.+|++++.+.|. +|+.+
T Consensus 77 ~i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 77 AIHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp EEESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred ccccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 347899999999999999998774 55554
No 296
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.75 E-value=2.1e+02 Score=21.29 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=27.8
Q ss_pred ccchhhhhcCCCcEEEeCCCcch-HHHHHHHhCCCceeeccc
Q 036105 70 AKNEDLFLNFPVNCVVYDSFLPW-ALDVAKEYGLYGAAFFTN 110 (198)
Q Consensus 70 ~~~~~~~l~~~~~~vi~D~~~~~-~~~vA~~~~iP~~~f~~~ 110 (198)
..+++.+++.+||+||......- ..+--++.|+|++.+...
T Consensus 50 ~~n~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~ 91 (195)
T cd01143 50 NPNVEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAA 91 (195)
T ss_pred CCCHHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCC
Confidence 45677777778899998653322 234456789999887654
No 297
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=20.59 E-value=2.5e+02 Score=21.78 Aligned_cols=35 Identities=29% Similarity=0.313 Sum_probs=32.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
+.+.-.|+.|.-.=.++++...+.+|.+|.|+.++
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 57778889999999999999999999999999998
No 298
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=20.58 E-value=2.2e+02 Score=21.06 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=28.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
+.++-+.+.|=..=+..|+++|..+|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45667778888888899999999999999988653
No 299
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=20.57 E-value=1.8e+02 Score=23.28 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=34.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeccccccc
Q 036105 8 VVLLPYPSQGHINPLLQFAKRLASK-GVKATLATTHYTAKS 47 (198)
Q Consensus 8 vv~~p~p~~GH~~P~l~La~~L~~~-G~~Vt~~~~~~~~~~ 47 (198)
+++-..|+.|--.=++++|..++.+ |..|-+++.+-....
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~ 62 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEE 62 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHH
Confidence 6777889999999999999999997 699999999865543
No 300
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=20.53 E-value=1.4e+02 Score=23.82 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=28.4
Q ss_pred EcCCCccCh-HHHHHHHHHHHhC--CCeEEEEecccccccc
Q 036105 11 LPYPSQGHI-NPLLQFAKRLASK--GVKATLATTHYTAKSM 48 (198)
Q Consensus 11 ~p~p~~GH~-~P~l~La~~L~~~--G~~Vt~~~~~~~~~~~ 48 (198)
+-..+.|+. .=..+|.++|.++ |++|.++.|+...+.+
T Consensus 4 ~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i 44 (234)
T TIGR02700 4 WGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV 44 (234)
T ss_pred EEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH
Confidence 344455566 4788999999998 9999999987654433
No 301
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=20.49 E-value=2.7e+02 Score=22.46 Aligned_cols=40 Identities=20% Similarity=0.147 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 036105 4 DRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT 44 (198)
Q Consensus 4 ~~~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~ 44 (198)
+++.||++.-.+.+.. -.-.+++.|.++|++|..+.-+..
T Consensus 17 ~~p~vvliHG~~~~~~-~w~~~~~~L~~~g~~vi~~dl~g~ 56 (273)
T PLN02211 17 QPPHFVLIHGISGGSW-CWYKIRCLMENSGYKVTCIDLKSA 56 (273)
T ss_pred CCCeEEEECCCCCCcC-cHHHHHHHHHhCCCEEEEecccCC
Confidence 3467888887665443 457778889889999888776543
No 302
>PRK14974 cell division protein FtsY; Provisional
Probab=20.49 E-value=2.7e+02 Score=23.78 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=34.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 036105 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT 44 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~ 44 (198)
.-|+++-.++.|=..-...||..|..+|++|.++++...
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 457888899999999999999999999999999887643
No 303
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=20.41 E-value=1e+02 Score=24.89 Aligned_cols=30 Identities=10% Similarity=-0.057 Sum_probs=24.0
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 036105 16 QGHINPLLQFAKRLASKGVKATLATTHYTA 45 (198)
Q Consensus 16 ~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~ 45 (198)
.|--.=+.+|++.|+++|+.|++++.....
T Consensus 15 gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~ 44 (365)
T cd03809 15 TGIGRYARELLRALLKLDPEEVLLLLPGAP 44 (365)
T ss_pred CcHHHHHHHHHHHHHhcCCceEEEEecCcc
Confidence 344456799999999999999999876543
No 304
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=20.22 E-value=1e+02 Score=25.32 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=20.2
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 17 GHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 17 GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
||+.| +...+.|...|+++.++...
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~d 40 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIGG 40 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEec
Confidence 99999 77777888889998886653
No 305
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=20.19 E-value=7.4e+02 Score=24.34 Aligned_cols=86 Identities=15% Similarity=0.033 Sum_probs=49.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc----ccCC---CCceEEeccCCCCCCCcccccchhhhhc
Q 036105 6 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK----SMCG---PHVGVEPISDGFDEGGYAQAKNEDLFLN 78 (198)
Q Consensus 6 ~hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~~~~~----~~~~---~~i~~~~lp~~~~~~~~~~~~~~~~~l~ 78 (198)
.+++++.-+. + ...+++.|.+.|.+|..+.+..... ++.. .+..+ +.+ .+...+.+.++
T Consensus 321 Krv~i~~g~~--~---~~~la~~l~elGmevv~~g~~~~~~~d~~~~~~~~~~~~~v--i~~-------~d~~el~~~i~ 386 (917)
T PRK14477 321 KRVVLFTGGV--K---TWSMVNALRELGVEVLAAGTQNSTLEDFARMKALMHKDAHI--IED-------TSTAGLLRVMR 386 (917)
T ss_pred CEEEEECCCc--h---HHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHhcCCCCEE--EEC-------CCHHHHHHHHH
Confidence 4677775442 2 4557888888999997766543321 1110 11111 110 01222344444
Q ss_pred -CCCcEEEeCCCcchHHHHHHHhCCCceeec
Q 036105 79 -FPVNCVVYDSFLPWALDVAKEYGLYGAAFF 108 (198)
Q Consensus 79 -~~~~~vi~D~~~~~~~~vA~~~~iP~~~f~ 108 (198)
.+||++|.... ...+|+++|||.+-..
T Consensus 387 ~~~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 387 EKMPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred hcCCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 58999998653 4568999999999543
No 306
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=20.11 E-value=2.4e+02 Score=24.07 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=22.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 036105 7 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 42 (198)
Q Consensus 7 hvv~~p~p~~GH~~P~l~La~~L~~~G~~Vt~~~~~ 42 (198)
+|.++-..+.| ..||+.|+++||.|++-.-.
T Consensus 3 kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 3 KIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred eEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 34444444444 46899999999999998754
No 307
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=20.08 E-value=1.1e+02 Score=24.20 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=15.6
Q ss_pred HHHHHHHhCCCeEEEEec
Q 036105 24 QFAKRLASKGVKATLATT 41 (198)
Q Consensus 24 ~La~~L~~~G~~Vt~~~~ 41 (198)
++.++...|||+||-+.-
T Consensus 15 ~i~~EA~~RGHeVTAivR 32 (211)
T COG2910 15 RILKEALKRGHEVTAIVR 32 (211)
T ss_pred HHHHHHHhCCCeeEEEEe
Confidence 578888999999999875
No 308
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=20.00 E-value=1e+02 Score=24.50 Aligned_cols=84 Identities=14% Similarity=0.002 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCeEEEEeccccc-cccCC--CCceEEeccCCCCCCCcccccchhhhhcCCCcEEEeCCCcc----hHHH
Q 036105 23 LQFAKRLASKGVKATLATTHYTA-KSMCG--PHVGVEPISDGFDEGGYAQAKNEDLFLNFPVNCVVYDSFLP----WALD 95 (198)
Q Consensus 23 l~La~~L~~~G~~Vt~~~~~~~~-~~~~~--~~i~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~vi~D~~~~----~~~~ 95 (198)
..+|+.|.+.||+|+.+-..... ....+ ...+.+.. ++..+ .-+++.=-...|.+|+..--. -+..
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~g-d~t~~------~~L~~agi~~aD~vva~t~~d~~N~i~~~ 85 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIG-DATDE------DVLEEAGIDDADAVVAATGNDEVNSVLAL 85 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEe-cCCCH------HHHHhcCCCcCCEEEEeeCCCHHHHHHHH
Confidence 57899999999999998765433 22112 22222222 11111 001110003456676665442 2445
Q ss_pred HHHH-hCCCceeecccchH
Q 036105 96 VAKE-YGLYGAAFFTNSAT 113 (198)
Q Consensus 96 vA~~-~~iP~~~f~~~~a~ 113 (198)
+|.+ +|+|.+.--..+..
T Consensus 86 la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 86 LALKEFGVPRVIARARNPE 104 (225)
T ss_pred HHHHhcCCCcEEEEecCHH
Confidence 6655 78888877665554
Done!